2022-04-05T15:57:37,246 Created temporary directory: /tmp/pip-ephem-wheel-cache-qu_c82ln 2022-04-05T15:57:37,252 Created temporary directory: /tmp/pip-req-tracker-_y4u1z9g 2022-04-05T15:57:37,253 Initialized build tracking at /tmp/pip-req-tracker-_y4u1z9g 2022-04-05T15:57:37,253 Created build tracker: /tmp/pip-req-tracker-_y4u1z9g 2022-04-05T15:57:37,253 Entered build tracker: /tmp/pip-req-tracker-_y4u1z9g 2022-04-05T15:57:37,255 Created temporary directory: /tmp/pip-wheel-dzn2htzo 2022-04-05T15:57:37,324 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-05T15:57:37,338 2 location(s) to search for versions of polyply: 2022-04-05T15:57:37,338 * https://pypi.org/simple/polyply/ 2022-04-05T15:57:37,338 * https://www.piwheels.org/simple/polyply/ 2022-04-05T15:57:37,339 Fetching project page and analyzing links: https://pypi.org/simple/polyply/ 2022-04-05T15:57:37,340 Getting page https://pypi.org/simple/polyply/ 2022-04-05T15:57:37,343 Found index url https://pypi.org/simple 2022-04-05T15:57:37,459 Found link https://files.pythonhosted.org/packages/27/d1/df68703f3e73c235e05823b59a5271657847bcccdd392075b1b1da4aa701/polyply-0.0.1.tar.gz#sha256=4aebefec4a57040bf1ce245c622c917ae7510e0b37a8fa9b2381d11c3ddbc2ad (from https://pypi.org/simple/polyply/), version: 0.0.1 2022-04-05T15:57:37,460 Found link https://files.pythonhosted.org/packages/3f/35/d6ad36f78a4d71aac92d47e2831c4b3b339c6801c6dac6c3334a73a164c2/polyply-1.0.0.tar.gz#sha256=feb5c19d58ea34cc9816515e82680bfe4fa4d3e4808de5ef4629ebf47e005654 (from https://pypi.org/simple/polyply/), version: 1.0.0 2022-04-05T15:57:37,461 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/61/c4/9393a7f82554a6c494f4c09776d48e4b83650cb2065930bcf63f0a04b3f2/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://pypi.org/simple/polyply/) 2022-04-05T15:57:37,461 Found link https://files.pythonhosted.org/packages/07/50/e2bedb4e92e97d38a55c48bb46ccdb71c31980679e7c62a756daf8ac0556/polyply-1.1.0.tar.gz#sha256=49ca6b1d872ce691f1dfb4f02de4cb656db9eec9b736b7099f4d9e37bbee7297 (from https://pypi.org/simple/polyply/), version: 1.1.0 2022-04-05T15:57:37,462 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/b6/73/dae457005e36caeed515e0ddd6575f97b7b7ef0fa10ea58080b214f28bcb/polyply-1.2.0-py2.py3-none-any.whl#sha256=7c842ede1d5a88a8c1aa25ae2a30c6a67c7b4a15bfb965e104f7c7cf8ccdce31 (from https://pypi.org/simple/polyply/) 2022-04-05T15:57:37,463 Found link https://files.pythonhosted.org/packages/18/8e/2f4345b5870703a292c4a6935f371b133bf4296fb0c27277fc2b0e82b84a/polyply-1.2.0.tar.gz#sha256=d067e533b27f2379b36a238539a3b774de9cf6876c5de2706794c1749f42baff (from https://pypi.org/simple/polyply/), version: 1.2.0 2022-04-05T15:57:37,463 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/30/09/9a2dd9e4a932367c34dab96daa3358f525caf79281b782cc999c5d23e739/polyply-1.2.1-py2.py3-none-any.whl#sha256=e900810bd542c4db6034af2fcb70a1ea1aa172274d6d6e89ed4f26c8496eca8f (from https://pypi.org/simple/polyply/) 2022-04-05T15:57:37,464 Found link https://files.pythonhosted.org/packages/44/2e/5a1f0589f61f2adf682da196f365578969be49e70bb5c462b804378574b8/polyply-1.2.1.tar.gz#sha256=039ed6a6f92e2f5695976b43699c0e8506bda1541ddd1fedc94d49a250331369 (from https://pypi.org/simple/polyply/), version: 1.2.1 2022-04-05T15:57:37,464 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/8b/5a/54052dbde396df09dd9d81aeb3c5e1b3873d7a81e387f4c45cc3e9a9aaf7/polyply-1.3.0-py2.py3-none-any.whl#sha256=f72e0c5ca2cad71a3d2f83477d53e36e839f2f794fbb8513bfd16ce1c14227bb (from https://pypi.org/simple/polyply/) 2022-04-05T15:57:37,465 Found link https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz#sha256=f7019281f082c2a247a5a9313dfca03525923c0c06ec03da4b798638cf2af846 (from https://pypi.org/simple/polyply/), version: 1.3.0 2022-04-05T15:57:37,466 Fetching project page and analyzing links: https://www.piwheels.org/simple/polyply/ 2022-04-05T15:57:37,467 Getting page https://www.piwheels.org/simple/polyply/ 2022-04-05T15:57:37,469 Found index url https://www.piwheels.org/simple 2022-04-05T15:57:52,551 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/polyply/ 2022-04-05T15:58:08,121 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/polyply/ 2022-04-05T15:58:13,235 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.1-py2.py3-none-any.whl#sha256=477478cf7f4d673782ed4e85fc97d32eaf0f5c1d5aa5af96d33ef496c1325007 (from https://www.piwheels.org/simple/polyply/) 2022-04-05T15:58:13,236 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.0-py2.py3-none-any.whl#sha256=672ceb8c03418bf79a0c31ab912adb5e0767df776a7d5d867a516ea0652e6362 (from https://www.piwheels.org/simple/polyply/) 2022-04-05T15:58:13,237 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://www.piwheels.org/simple/polyply/) 2022-04-05T15:58:13,237 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.0.0-py2.py3-none-any.whl#sha256=e44f0272c9e93e8e46bed997db28dd0205d709cebd40090747e2758358abdb8c (from https://www.piwheels.org/simple/polyply/) 2022-04-05T15:58:13,238 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-0.0.1-py2.py3-none-any.whl#sha256=165e22dfd4680f03fe8b6a49a8d3f38918049d263c57c0e82b5fddb4bc8b294b (from https://www.piwheels.org/simple/polyply/) 2022-04-05T15:58:13,238 Skipping link: not a file: https://www.piwheels.org/simple/polyply/ 2022-04-05T15:58:13,239 Skipping link: not a file: https://pypi.org/simple/polyply/ 2022-04-05T15:58:13,283 Given no hashes to check 1 links for project 'polyply': discarding no candidates 2022-04-05T15:58:13,314 Collecting polyply==1.3.0 2022-04-05T15:58:13,320 Created temporary directory: /tmp/pip-unpack-lwkq3kh1 2022-04-05T15:58:13,410 Downloading polyply-1.3.0.tar.gz (516 kB) 2022-04-05T15:58:14,758 Added polyply==1.3.0 from https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz#sha256=f7019281f082c2a247a5a9313dfca03525923c0c06ec03da4b798638cf2af846 to build tracker '/tmp/pip-req-tracker-_y4u1z9g' 2022-04-05T15:58:14,768 Created temporary directory: /tmp/pip-build-env-nlne2dak 2022-04-05T15:58:14,782 Created temporary directory: /tmp/pip-standalone-pip-ski1d57z 2022-04-05T15:58:17,073 Installing build dependencies: started 2022-04-05T15:58:17,075 Running command pip subprocess to install build dependencies 2022-04-05T15:58:27,206 Using pip 22.0.4 from /tmp/pip-standalone-pip-ski1d57z/__env_pip__.zip/pip (python 3.7) 2022-04-05T15:58:28,583 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-05T15:58:29,428 Collecting wheel 2022-04-05T15:58:29,463 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-04-05T15:58:33,280 Collecting setuptools>=30.3.0 2022-04-05T15:58:33,539 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.0.0-py3-none-any.whl (1.1 MB) 2022-04-05T15:58:34,196 Collecting pbr 2022-04-05T15:58:34,269 Using cached https://www.piwheels.org/simple/pbr/pbr-5.8.1-py2.py3-none-any.whl (108 kB) 2022-04-05T15:58:39,064 Installing collected packages: wheel, setuptools, pbr 2022-04-05T15:58:39,327 Creating /tmp/pip-build-env-nlne2dak/overlay/bin 2022-04-05T15:58:39,331 changing mode of /tmp/pip-build-env-nlne2dak/overlay/bin/wheel to 755 2022-04-05T15:58:44,323 changing mode of /tmp/pip-build-env-nlne2dak/overlay/bin/pbr to 755 2022-04-05T15:58:44,357 Successfully installed pbr-5.8.1 setuptools-62.0.0 wheel-0.37.1 2022-04-05T15:58:45,011 Installing build dependencies: finished with status 'done' 2022-04-05T15:58:45,053 Getting requirements to build wheel: started 2022-04-05T15:58:45,055 Running command Getting requirements to build wheel 2022-04-05T15:58:46,652 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-04-05T15:58:46,654 % (opt, underscore_opt) 2022-04-05T15:58:46,654 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-04-05T15:58:46,655 % (opt, underscore_opt) 2022-04-05T15:58:46,655 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-04-05T15:58:46,655 % (opt, underscore_opt) 2022-04-05T15:58:46,656 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-04-05T15:58:46,656 % (opt, underscore_opt) 2022-04-05T15:58:46,770 Getting requirements to build wheel: finished with status 'done' 2022-04-05T15:58:46,800 Created temporary directory: /tmp/pip-modern-metadata-wse42tpp 2022-04-05T15:58:46,806 Preparing metadata (pyproject.toml): started 2022-04-05T15:58:46,808 Running command Preparing metadata (pyproject.toml) 2022-04-05T15:58:49,029 running dist_info 2022-04-05T15:58:49,038 creating /tmp/pip-modern-metadata-wse42tpp/polyply.egg-info 2022-04-05T15:58:49,103 writing manifest file '/tmp/pip-modern-metadata-wse42tpp/polyply.egg-info/SOURCES.txt' 2022-04-05T15:58:49,293 /usr/local/lib/python3.7/dist-packages/setuptools/command/easy_install.py:159: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-04-05T15:58:49,294 EasyInstallDeprecationWarning, 2022-04-05T15:58:49,294 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-04-05T15:58:49,294 setuptools.SetuptoolsDeprecationWarning, 2022-04-05T15:58:49,295 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-04-05T15:58:49,295 % (opt, underscore_opt) 2022-04-05T15:58:49,295 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-04-05T15:58:49,296 % (opt, underscore_opt) 2022-04-05T15:58:49,296 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-04-05T15:58:49,296 % (opt, underscore_opt) 2022-04-05T15:58:49,297 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-04-05T15:58:49,297 % (opt, underscore_opt) 2022-04-05T15:58:49,297 warning: no previously-included files found matching '.gitignore' 2022-04-05T15:58:49,298 warning: no previously-included files found matching '.gitreview' 2022-04-05T15:58:49,298 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2022-04-05T15:58:49,432 writing manifest file '/tmp/pip-modern-metadata-wse42tpp/polyply.egg-info/SOURCES.txt' 2022-04-05T15:58:49,522 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-04-05T15:58:49,751 Preparing metadata (pyproject.toml): finished with status 'done' 2022-04-05T15:58:49,766 Source in /tmp/pip-wheel-dzn2htzo/polyply_5341ec15dafe4ae3835bceacfe7cd711 has version 1.3.0, which satisfies requirement polyply==1.3.0 from https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz#sha256=f7019281f082c2a247a5a9313dfca03525923c0c06ec03da4b798638cf2af846 2022-04-05T15:58:49,768 Removed polyply==1.3.0 from https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz#sha256=f7019281f082c2a247a5a9313dfca03525923c0c06ec03da4b798638cf2af846 from build tracker '/tmp/pip-req-tracker-_y4u1z9g' 2022-04-05T15:58:49,779 Created temporary directory: /tmp/pip-unpack-hdmyjilt 2022-04-05T15:58:49,780 Building wheels for collected packages: polyply 2022-04-05T15:58:49,789 Created temporary directory: /tmp/pip-wheel-kslrp9pd 2022-04-05T15:58:49,790 Destination directory: /tmp/pip-wheel-kslrp9pd 2022-04-05T15:58:49,794 Building wheel for polyply (pyproject.toml): started 2022-04-05T15:58:49,796 Running command Building wheel for polyply (pyproject.toml) 2022-04-05T15:58:51,915 running bdist_wheel 2022-04-05T15:58:51,919 /usr/local/lib/python3.7/dist-packages/setuptools/command/easy_install.py:159: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-04-05T15:58:51,919 EasyInstallDeprecationWarning, 2022-04-05T15:58:51,920 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-04-05T15:58:51,920 % (opt, underscore_opt) 2022-04-05T15:58:51,920 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-04-05T15:58:51,921 % (opt, underscore_opt) 2022-04-05T15:58:51,921 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-04-05T15:58:51,921 % (opt, underscore_opt) 2022-04-05T15:58:51,922 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:726: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-04-05T15:58:51,922 % (opt, underscore_opt) 2022-04-05T15:58:51,922 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-04-05T15:58:52,369 running build 2022-04-05T15:58:52,369 running build_py 2022-04-05T15:58:52,376 creating build 2022-04-05T15:58:52,377 creating build/lib 2022-04-05T15:58:52,378 creating build/lib/polyply 2022-04-05T15:58:52,379 creating build/lib/polyply/data 2022-04-05T15:58:52,381 copying polyply/data/__init__.py -> build/lib/polyply/data 2022-04-05T15:58:52,390 creating build/lib/polyply/src 2022-04-05T15:58:52,391 copying polyply/src/persistence.py -> build/lib/polyply/src 2022-04-05T15:58:52,395 copying polyply/src/build_system.py -> build/lib/polyply/src 2022-04-05T15:58:52,398 copying polyply/src/nonbond_engine.py -> build/lib/polyply/src 2022-04-05T15:58:52,402 copying polyply/src/processor.py -> build/lib/polyply/src 2022-04-05T15:58:52,405 copying polyply/src/__init__.py -> build/lib/polyply/src 2022-04-05T15:58:52,408 copying polyply/src/load_library.py -> build/lib/polyply/src 2022-04-05T15:58:52,411 copying polyply/src/graph_utils.py -> build/lib/polyply/src 2022-04-05T15:58:52,415 copying polyply/src/minimizer.py -> build/lib/polyply/src 2022-04-05T15:58:52,418 copying polyply/src/simple_seq_parsers.py -> build/lib/polyply/src 2022-04-05T15:58:52,423 copying polyply/src/gen_seq.py -> build/lib/polyply/src 2022-04-05T15:58:52,427 copying polyply/src/apply_modifications.py -> build/lib/polyply/src 2022-04-05T15:58:52,430 copying polyply/src/map_to_molecule.py -> build/lib/polyply/src 2022-04-05T15:58:52,433 copying polyply/src/polyply_parser.py -> build/lib/polyply/src 2022-04-05T15:58:52,437 copying polyply/src/virtual_site_builder.py -> build/lib/polyply/src 2022-04-05T15:58:52,440 copying polyply/src/ff_parser_sub.py -> build/lib/polyply/src 2022-04-05T15:58:52,443 copying polyply/src/gen_coords.py -> build/lib/polyply/src 2022-04-05T15:58:52,447 copying polyply/src/top_parser.py -> build/lib/polyply/src 2022-04-05T15:58:52,451 copying polyply/src/linalg_functions.py -> build/lib/polyply/src 2022-04-05T15:58:52,455 copying polyply/src/gen_itp.py -> build/lib/polyply/src 2022-04-05T15:58:52,459 copying polyply/src/build_file_parser.py -> build/lib/polyply/src 2022-04-05T15:58:52,463 copying polyply/src/logging.py -> build/lib/polyply/src 2022-04-05T15:58:52,466 copying polyply/src/backmap.py -> build/lib/polyply/src 2022-04-05T15:58:52,471 copying polyply/src/meta_molecule.py -> build/lib/polyply/src 2022-04-05T15:58:52,476 copying polyply/src/generate_templates.py -> build/lib/polyply/src 2022-04-05T15:58:52,480 copying polyply/src/check_residue_equivalence.py -> build/lib/polyply/src 2022-04-05T15:58:52,484 copying polyply/src/restraints.py -> build/lib/polyply/src 2022-04-05T15:58:52,488 copying polyply/src/random_walk.py -> build/lib/polyply/src 2022-04-05T15:58:52,493 copying polyply/src/apply_links.py -> build/lib/polyply/src 2022-04-05T15:58:52,497 copying polyply/src/topology.py -> build/lib/polyply/src 2022-04-05T15:58:52,502 copying polyply/src/annotate_ligands.py -> build/lib/polyply/src 2022-04-05T15:58:52,507 copying polyply/__init__.py -> build/lib/polyply 2022-04-05T15:58:52,515 creating build/lib/polyply/tests 2022-04-05T15:58:52,518 copying polyply/tests/test_backmap.py -> build/lib/polyply/tests 2022-04-05T15:58:52,522 copying polyply/tests/__init__.py -> build/lib/polyply/tests 2022-04-05T15:58:52,525 copying polyply/tests/test_load_library.py -> build/lib/polyply/tests 2022-04-05T15:58:52,529 copying polyply/tests/test_gen_coords.py -> build/lib/polyply/tests 2022-04-05T15:58:52,532 copying polyply/tests/test_persistence.py -> build/lib/polyply/tests 2022-04-05T15:58:52,537 copying polyply/tests/test_meta_molecule.py -> build/lib/polyply/tests 2022-04-05T15:58:52,541 copying polyply/tests/test_build_file_parser.py -> build/lib/polyply/tests 2022-04-05T15:58:52,546 copying polyply/tests/test_residue_check.py -> build/lib/polyply/tests 2022-04-05T15:58:52,550 copying polyply/tests/test_optimize_geometry.py -> build/lib/polyply/tests 2022-04-05T15:58:52,554 copying polyply/tests/test_simple_seq_parsers.py -> build/lib/polyply/tests 2022-04-05T15:58:52,557 copying polyply/tests/test_logging.py -> build/lib/polyply/tests 2022-04-05T15:58:52,560 copying polyply/tests/test_generate_templates.py -> build/lib/polyply/tests 2022-04-05T15:58:52,564 copying polyply/tests/test_gen_seq.py -> build/lib/polyply/tests 2022-04-05T15:58:52,568 copying polyply/tests/test_lib_files.py -> build/lib/polyply/tests 2022-04-05T15:58:52,572 copying polyply/tests/test_build_system.py -> build/lib/polyply/tests 2022-04-05T15:58:52,575 copying polyply/tests/example_fixtures.py -> build/lib/polyply/tests 2022-04-05T15:58:52,579 copying polyply/tests/test_nb_engine.py -> build/lib/polyply/tests 2022-04-05T15:58:52,583 copying polyply/tests/test_apply_links.py -> build/lib/polyply/tests 2022-04-05T15:58:52,587 copying polyply/tests/test_ff_parser.py -> build/lib/polyply/tests 2022-04-05T15:58:52,590 copying polyply/tests/test_polyply_input.py -> build/lib/polyply/tests 2022-04-05T15:58:52,594 copying polyply/tests/test_map_to_molecule.py -> build/lib/polyply/tests 2022-04-05T15:58:52,598 copying polyply/tests/test_top_parser.py -> build/lib/polyply/tests 2022-04-05T15:58:52,602 copying polyply/tests/test_graph_utils.py -> build/lib/polyply/tests 2022-04-05T15:58:52,605 copying polyply/tests/test_random_walk.py -> build/lib/polyply/tests 2022-04-05T15:58:52,609 copying polyply/tests/test_gen_params.py -> build/lib/polyply/tests 2022-04-05T15:58:52,613 copying polyply/tests/test_vs_builder.py -> build/lib/polyply/tests 2022-04-05T15:58:52,617 copying polyply/tests/test_topology.py -> build/lib/polyply/tests 2022-04-05T15:58:52,622 copying polyply/tests/test_linalg.py -> build/lib/polyply/tests 2022-04-05T15:58:52,625 copying polyply/tests/test_restraints.py -> build/lib/polyply/tests 2022-04-05T15:58:52,629 copying polyply/tests/test_itp_files.py -> build/lib/polyply/tests 2022-04-05T15:58:52,633 copying polyply/tests/test_annotate_lingads.py -> build/lib/polyply/tests 2022-04-05T15:58:52,637 running egg_info 2022-04-05T15:58:52,905 creating build/lib/polyply/data/2016H66 2022-04-05T15:58:52,907 copying polyply/data/2016H66/chiral_links.ff -> build/lib/polyply/data/2016H66 2022-04-05T15:58:52,911 copying polyply/data/2016H66/citation.bib -> build/lib/polyply/data/2016H66 2022-04-05T15:58:52,914 copying polyply/data/2016H66/polyether_blocks.ff -> build/lib/polyply/data/2016H66 2022-04-05T15:58:52,918 copying polyply/data/2016H66/polyether_links.ff -> build/lib/polyply/data/2016H66 2022-04-05T15:58:52,923 copying polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2022-04-05T15:58:52,927 copying polyply/data/2016H66/polyvinyl_blocks.ff -> build/lib/polyply/data/2016H66 2022-04-05T15:58:52,932 copying polyply/data/2016H66/polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2022-04-05T15:58:52,937 copying polyply/data/2016H66/terminal_blocks.ff -> build/lib/polyply/data/2016H66 2022-04-05T15:58:52,940 creating build/lib/polyply/data/gromos53A6 2022-04-05T15:58:52,942 copying polyply/data/gromos53A6/Hter.ff -> build/lib/polyply/data/gromos53A6 2022-04-05T15:58:52,946 copying polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/lib/polyply/data/gromos53A6 2022-04-05T15:58:52,950 copying polyply/data/gromos53A6/citations.bib -> build/lib/polyply/data/gromos53A6 2022-04-05T15:58:52,954 copying polyply/data/gromos53A6/links.ff -> build/lib/polyply/data/gromos53A6 2022-04-05T15:58:52,958 creating build/lib/polyply/data/martini2 2022-04-05T15:58:52,960 copying polyply/data/martini2/DNA_M2.ff -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,965 copying polyply/data/martini2/P3HT.martini.2.itp -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,969 copying polyply/data/martini2/PDADMA.martini.2.itp -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,973 copying polyply/data/martini2/PE.martini.2.itp -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,976 copying polyply/data/martini2/PEO.martini.2.itp -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,981 copying polyply/data/martini2/PP.martini.2.itp -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,985 copying polyply/data/martini2/PS.martini.2.itp -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,989 copying polyply/data/martini2/PSS.martini.2.itp -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,992 copying polyply/data/martini2/citations.bib -> build/lib/polyply/data/martini2 2022-04-05T15:58:52,996 copying polyply/data/martini2/links.ff -> build/lib/polyply/data/martini2 2022-04-05T15:58:53,000 creating build/lib/polyply/data/martini3 2022-04-05T15:58:53,001 copying polyply/data/martini3/P3HT.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,006 copying polyply/data/martini3/PE.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,010 copying polyply/data/martini3/PEL_link.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,014 copying polyply/data/martini3/PEO.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,018 copying polyply/data/martini3/PMA.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,022 copying polyply/data/martini3/PMMA.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,025 copying polyply/data/martini3/PS.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,029 copying polyply/data/martini3/PSS.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,033 copying polyply/data/martini3/PS_PEO_link.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,037 copying polyply/data/martini3/PVA.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,041 copying polyply/data/martini3/aminoacids.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,045 copying polyply/data/martini3/citations.bib -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,049 copying polyply/data/martini3/dextran.martini3.ff -> build/lib/polyply/data/martini3 2022-04-05T15:58:53,053 creating build/lib/polyply/data/martini3_beta 2022-04-05T15:58:53,054 copying polyply/data/martini3_beta/PEO.martini.3.itp -> build/lib/polyply/data/martini3_beta 2022-04-05T15:58:53,058 copying polyply/data/martini3_beta/citations.bib -> build/lib/polyply/data/martini3_beta 2022-04-05T15:58:53,062 creating build/lib/polyply/data/oplsaaLigParGen 2022-04-05T15:58:53,063 copying polyply/data/oplsaaLigParGen/OHter.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-04-05T15:58:53,067 copying polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-04-05T15:58:53,071 copying polyply/data/oplsaaLigParGen/citations.bib -> build/lib/polyply/data/oplsaaLigParGen 2022-04-05T15:58:53,075 copying polyply/data/oplsaaLigParGen/links.ff -> build/lib/polyply/data/oplsaaLigParGen 2022-04-05T15:58:53,079 creating build/lib/polyply/data/parmbsc1 2022-04-05T15:58:53,080 copying polyply/data/parmbsc1/citations.bib -> build/lib/polyply/data/parmbsc1 2022-04-05T15:58:53,084 copying polyply/data/parmbsc1/dna_final.ff -> build/lib/polyply/data/parmbsc1 2022-04-05T15:58:53,128 creating build/lib/polyply/tests/test_data 2022-04-05T15:58:53,129 creating build/lib/polyply/tests/test_data/itp 2022-04-05T15:58:53,131 copying polyply/tests/test_data/itp/PEO.itp -> build/lib/polyply/tests/test_data/itp 2022-04-05T15:58:53,134 creating build/lib/polyply/tests/test_data/ff 2022-04-05T15:58:53,136 copying polyply/tests/test_data/ff/aminoacids.ff -> build/lib/polyply/tests/test_data/ff 2022-04-05T15:58:53,141 creating build/lib/polyply/tests/test_data/gen_seq 2022-04-05T15:58:53,142 creating build/lib/polyply/tests/test_data/gen_seq/ref 2022-04-05T15:58:53,144 copying polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-04-05T15:58:53,148 copying polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-04-05T15:58:53,154 copying polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2022-04-05T15:58:53,158 creating build/lib/polyply/tests/test_data/gen_seq/input 2022-04-05T15:58:53,160 copying polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/lib/polyply/tests/test_data/gen_seq/input 2022-04-05T15:58:53,166 creating build/lib/polyply/tests/test_data/gen_seq/output 2022-04-05T15:58:53,168 copying polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-04-05T15:58:53,172 copying polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-04-05T15:58:53,181 copying polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-04-05T15:58:53,190 copying polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-04-05T15:58:53,194 copying polyply/tests/test_data/gen_seq/output/PPI.json -> build/lib/polyply/tests/test_data/gen_seq/output 2022-04-05T15:58:53,198 creating build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,199 copying polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,203 copying polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,207 copying polyply/tests/test_data/polyply/PE.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,211 copying polyply/tests/test_data/polyply/PP.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,214 copying polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,218 copying polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,222 copying polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,226 copying polyply/tests/test_data/polyply/PS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,229 copying polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2022-04-05T15:58:53,233 creating build/lib/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:53,235 copying polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:53,239 copying polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:53,242 copying polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:53,246 copying polyply/tests/test_data/simple_seq_files/test.txt -> build/lib/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:53,249 copying polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:53,253 copying polyply/tests/test_data/simple_seq_files/test.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:53,256 copying polyply/tests/test_data/simple_seq_files/test.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:53,260 creating build/lib/polyply/tests/test_data/json 2022-04-05T15:58:53,262 copying polyply/tests/test_data/json/double_branch.json -> build/lib/polyply/tests/test_data/json 2022-04-05T15:58:53,267 copying polyply/tests/test_data/json/single_branch.json -> build/lib/polyply/tests/test_data/json 2022-04-05T15:58:53,270 copying polyply/tests/test_data/json/hyperbranched.json -> build/lib/polyply/tests/test_data/json 2022-04-05T15:58:53,274 copying polyply/tests/test_data/json/linear.json -> build/lib/polyply/tests/test_data/json 2022-04-05T15:58:53,278 copying polyply/tests/test_data/json/fail.json -> build/lib/polyply/tests/test_data/json 2022-04-05T15:58:53,281 copying polyply/tests/test_data/json/linear_rev.json -> build/lib/polyply/tests/test_data/json 2022-04-05T15:58:53,285 creating build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,286 copying polyply/tests/test_data/topology_test/test.itp -> build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,290 copying polyply/tests/test_data/topology_test/W.itp -> build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,294 copying polyply/tests/test_data/topology_test/test.pdb -> build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,303 copying polyply/tests/test_data/topology_test/system.top -> build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,307 copying polyply/tests/test_data/topology_test/test.gro -> build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,312 copying polyply/tests/test_data/topology_test/pdb.top -> build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,316 copying polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,340 copying polyply/tests/test_data/topology_test/molecule_0.itp -> build/lib/polyply/tests/test_data/topology_test 2022-04-05T15:58:53,351 creating build/lib/polyply/tests/test_data/gen_params 2022-04-05T15:58:53,352 creating build/lib/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:53,354 copying polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:53,358 copying polyply/tests/test_data/gen_params/ref/end.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:53,362 copying polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:53,367 copying polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:53,370 copying polyply/tests/test_data/gen_params/ref/G3.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:53,374 copying polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:53,378 copying polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:53,382 creating build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,383 copying polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,387 copying polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,391 copying polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,394 copying polyply/tests/test_data/gen_params/input/PPI.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,398 copying polyply/tests/test_data/gen_params/input/PS.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,402 copying polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,405 copying polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,409 copying polyply/tests/test_data/gen_params/input/test.ff -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,412 copying polyply/tests/test_data/gen_params/input/PPI.json -> build/lib/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:53,416 creating build/lib/polyply/tests/test_data/gen_params/output 2022-04-05T15:58:53,418 copying polyply/tests/test_data/gen_params/output/test_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-04-05T15:58:53,421 copying polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-04-05T15:58:53,425 copying polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-04-05T15:58:53,429 copying polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-04-05T15:58:53,433 copying polyply/tests/test_data/gen_params/output/PS_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-04-05T15:58:53,437 copying polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/lib/polyply/tests/test_data/gen_params/output 2022-04-05T15:58:53,441 creating build/lib/polyply/tests/test_data/struc_build 2022-04-05T15:58:53,442 copying polyply/tests/test_data/struc_build/PEO.itp -> build/lib/polyply/tests/test_data/struc_build 2022-04-05T15:58:53,446 copying polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/lib/polyply/tests/test_data/struc_build 2022-04-05T15:58:53,453 copying polyply/tests/test_data/struc_build/system.top -> build/lib/polyply/tests/test_data/struc_build 2022-04-05T15:58:53,456 creating build/lib/polyply/tests/test_data/library_tests 2022-04-05T15:58:53,457 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1 2022-04-05T15:58:53,458 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-04-05T15:58:53,460 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-04-05T15:58:53,464 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-04-05T15:58:53,473 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-04-05T15:58:53,475 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-04-05T15:58:53,479 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-04-05T15:58:53,494 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6 2022-04-05T15:58:53,494 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2022-04-05T15:58:53,495 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-04-05T15:58:53,497 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-04-05T15:58:53,501 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-04-05T15:58:53,507 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen 2022-04-05T15:58:53,508 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2022-04-05T15:58:53,509 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-04-05T15:58:53,510 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-04-05T15:58:53,516 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-04-05T15:58:53,520 creating build/lib/polyply/tests/test_data/library_tests/martini2 2022-04-05T15:58:53,520 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-04-05T15:58:53,540 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-04-05T15:58:53,543 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-04-05T15:58:53,545 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-04-05T15:58:53,549 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-04-05T15:58:53,553 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2022-04-05T15:58:53,554 copying polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2022-04-05T15:58:53,558 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-04-05T15:58:53,560 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-04-05T15:58:53,563 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-04-05T15:58:53,569 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS 2022-04-05T15:58:53,570 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-04-05T15:58:53,572 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-04-05T15:58:53,575 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-04-05T15:58:53,579 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO 2022-04-05T15:58:53,580 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-04-05T15:58:53,582 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-04-05T15:58:53,586 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-04-05T15:58:53,590 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-04-05T15:58:53,591 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-04-05T15:58:53,597 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-04-05T15:58:53,611 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-04-05T15:58:53,613 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-04-05T15:58:53,617 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-04-05T15:58:53,638 creating build/lib/polyply/tests/test_data/library_tests/2016H66 2022-04-05T15:58:53,639 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2022-04-05T15:58:53,640 copying polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2022-04-05T15:58:53,644 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-04-05T15:58:53,646 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-04-05T15:58:53,649 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-04-05T15:58:53,653 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2022-04-05T15:58:53,654 copying polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2022-04-05T15:58:53,659 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-04-05T15:58:53,660 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-04-05T15:58:53,665 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-04-05T15:58:53,668 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4 2022-04-05T15:58:53,669 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-04-05T15:58:53,671 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-04-05T15:58:53,888 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-04-05T15:58:53,894 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2022-04-05T15:58:53,896 copying polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2022-04-05T15:58:53,901 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-04-05T15:58:53,903 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-04-05T15:58:53,908 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-04-05T15:58:53,914 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2022-04-05T15:58:53,915 copying polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2022-04-05T15:58:53,919 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-04-05T15:58:53,921 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-04-05T15:58:53,925 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-04-05T15:58:53,929 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2022-04-05T15:58:53,930 copying polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2022-04-05T15:58:53,935 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-04-05T15:58:53,937 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-04-05T15:58:53,942 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-04-05T15:58:54,463 creating build/lib/polyply/tests/test_data/library_tests/martini3 2022-04-05T15:58:54,464 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE 2022-04-05T15:58:54,466 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-04-05T15:58:54,469 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-04-05T15:58:54,473 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-04-05T15:58:54,477 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX 2022-04-05T15:58:54,478 copying polyply/tests/test_data/library_tests/martini3/DEX/input.json -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX 2022-04-05T15:58:54,484 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-04-05T15:58:54,485 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-04-05T15:58:54,490 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-04-05T15:58:54,495 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT 2022-04-05T15:58:54,496 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-04-05T15:58:54,498 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-04-05T15:58:54,502 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-04-05T15:58:54,506 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS 2022-04-05T15:58:54,507 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-04-05T15:58:54,508 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-04-05T15:58:54,513 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-04-05T15:58:54,517 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-04-05T15:58:54,518 copying polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-04-05T15:58:54,524 copying polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2022-04-05T15:58:54,529 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-04-05T15:58:54,531 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-04-05T15:58:54,537 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-04-05T15:58:54,541 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO 2022-04-05T15:58:54,541 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-04-05T15:58:54,543 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-04-05T15:58:54,548 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-04-05T15:58:54,551 copying polyply/tests/.coverage -> build/lib/polyply/tests 2022-04-05T15:58:55,047 running build_scripts 2022-04-05T15:58:55,048 creating build/scripts-3.7 2022-04-05T15:58:55,055 running install 2022-04-05T15:58:55,196 running install_lib 2022-04-05T15:58:55,206 creating build/bdist.linux-armv7l 2022-04-05T15:58:55,207 creating build/bdist.linux-armv7l/wheel 2022-04-05T15:58:55,210 creating build/bdist.linux-armv7l/wheel/polyply 2022-04-05T15:58:55,214 creating build/bdist.linux-armv7l/wheel/polyply/src 2022-04-05T15:58:55,328 creating build/bdist.linux-armv7l/wheel/polyply/tests 2022-04-05T15:58:55,430 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data 2022-04-05T15:58:55,432 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2022-04-05T15:58:55,439 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2022-04-05T15:58:55,447 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq 2022-04-05T15:58:55,449 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2022-04-05T15:58:55,464 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2022-04-05T15:58:55,472 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2022-04-05T15:58:55,502 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2022-04-05T15:58:55,532 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2022-04-05T15:58:55,555 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2022-04-05T15:58:55,576 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2022-04-05T15:58:55,635 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params 2022-04-05T15:58:55,637 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2022-04-05T15:58:55,663 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2022-04-05T15:58:55,693 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output 2022-04-05T15:58:55,715 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2022-04-05T15:58:55,731 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests 2022-04-05T15:58:55,734 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1 2022-04-05T15:58:55,736 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2022-04-05T15:58:55,739 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2022-04-05T15:58:55,772 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6 2022-04-05T15:58:55,775 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2022-04-05T15:58:55,777 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2022-04-05T15:58:55,788 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen 2022-04-05T15:58:55,791 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2022-04-05T15:58:55,794 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2022-04-05T15:58:55,805 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2 2022-04-05T15:58:55,807 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2022-04-05T15:58:55,810 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2022-04-05T15:58:55,822 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2022-04-05T15:58:55,824 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2022-04-05T15:58:55,842 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS 2022-04-05T15:58:55,844 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2022-04-05T15:58:55,850 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO 2022-04-05T15:58:55,852 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2022-04-05T15:58:55,862 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2022-04-05T15:58:55,864 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2022-04-05T15:58:55,909 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66 2022-04-05T15:58:55,911 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2022-04-05T15:58:55,914 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2022-04-05T15:58:55,926 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2022-04-05T15:58:55,932 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2022-04-05T15:58:55,941 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4 2022-04-05T15:58:55,943 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2022-04-05T15:58:55,953 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2022-04-05T15:58:55,956 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2022-04-05T15:58:55,969 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2022-04-05T15:58:55,971 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2022-04-05T15:58:55,983 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2022-04-05T15:58:55,985 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2022-04-05T15:58:55,997 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3 2022-04-05T15:58:56,000 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE 2022-04-05T15:58:56,002 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2022-04-05T15:58:56,011 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX 2022-04-05T15:58:56,014 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2022-04-05T15:58:56,028 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT 2022-04-05T15:58:56,031 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2022-04-05T15:58:56,039 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS 2022-04-05T15:58:56,042 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2022-04-05T15:58:56,051 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2022-04-05T15:58:56,053 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2022-04-05T15:58:56,073 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO 2022-04-05T15:58:56,076 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2022-04-05T15:58:56,105 creating build/bdist.linux-armv7l/wheel/polyply/data 2022-04-05T15:58:56,107 creating build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2022-04-05T15:58:56,123 creating build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2022-04-05T15:58:56,138 creating build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2022-04-05T15:58:56,154 creating build/bdist.linux-armv7l/wheel/polyply/data/martini2 2022-04-05T15:58:56,187 creating build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2022-04-05T15:58:56,216 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2022-04-05T15:58:56,224 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3 2022-04-05T15:58:56,268 running install_egg_info 2022-04-05T15:58:56,273 Copying polyply.egg-info to build/bdist.linux-armv7l/wheel/polyply-1.3.0-py3.7.egg-info 2022-04-05T15:58:56,300 running install_scripts 2022-04-05T15:58:56,302 creating build/bdist.linux-armv7l/wheel/polyply-1.3.0.data 2022-04-05T15:58:56,303 creating build/bdist.linux-armv7l/wheel/polyply-1.3.0.data/scripts 2022-04-05T15:58:58,043 Building wheel for polyply (pyproject.toml): finished with status 'done' 2022-04-05T15:58:58,088 Created wheel for polyply: filename=polyply-1.3.0-py2.py3-none-any.whl size=609973 sha256=6ba24bf0e5816a4bbca620557f3da0c72223845d343dc2aef98b62c4d82dd3bb 2022-04-05T15:58:58,091 Stored in directory: /tmp/pip-ephem-wheel-cache-qu_c82ln/wheels/78/92/06/1d91ced6a5b16121dd7cfd11951afdca5f636ff5c9bc6ef401 2022-04-05T15:58:58,133 Successfully built polyply 2022-04-05T15:58:58,185 Removed build tracker: '/tmp/pip-req-tracker-_y4u1z9g'