2022-04-10T03:21:16,312 Created temporary directory: /tmp/pip-ephem-wheel-cache-40hw5lva 2022-04-10T03:21:16,318 Created temporary directory: /tmp/pip-req-tracker-c2h1io9h 2022-04-10T03:21:16,318 Initialized build tracking at /tmp/pip-req-tracker-c2h1io9h 2022-04-10T03:21:16,319 Created build tracker: /tmp/pip-req-tracker-c2h1io9h 2022-04-10T03:21:16,319 Entered build tracker: /tmp/pip-req-tracker-c2h1io9h 2022-04-10T03:21:16,320 Created temporary directory: /tmp/pip-wheel-nbg3fo7d 2022-04-10T03:21:16,390 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-10T03:21:16,399 2 location(s) to search for versions of bioc: 2022-04-10T03:21:16,399 * https://pypi.org/simple/bioc/ 2022-04-10T03:21:16,399 * https://www.piwheels.org/simple/bioc/ 2022-04-10T03:21:16,400 Fetching project page and analyzing links: https://pypi.org/simple/bioc/ 2022-04-10T03:21:16,401 Getting page https://pypi.org/simple/bioc/ 2022-04-10T03:21:16,405 Found index url 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https://files.pythonhosted.org/packages/b9/a2/34f61ead774ae0a656a40c782f7c593abf97352f4d555ec5a434b3fff20e/bioc-2.0.post1.tar.gz#sha256=ec021b6e9fd644f6789677a2eedd6328a17bd277d6feb896228733491e609077 (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 2.0.post1 2022-04-10T03:21:16,581 Skipping link: No binaries permitted for bioc: https://files.pythonhosted.org/packages/5e/5c/0c8def5223f020a1b165dad141e375693c98537a44b7742aac308d8c40cc/bioc-2.0.post2-py3-none-any.whl#sha256=71b6c49c8230132a15caa226a5f6a336222040ab77e558caf273f284150a03c7 (from https://pypi.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,583 Found link https://files.pythonhosted.org/packages/53/0c/0ba04a625dd39a3bda5815ca5b567f026230adda228b0a051681405f4870/bioc-2.0.post2.tar.gz#sha256=556a8d60fa6b5c39de2d81b0967d65f7ea9a3b2b30f3fe3a0491693d985482f1 (from https://pypi.org/simple/bioc/) (requires-python:>=3.6), version: 2.0.post2 2022-04-10T03:21:16,583 Skipping link: No binaries 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https://www.piwheels.org/simple/bioc/bioc-2.0.post2-py3-none-any.whl#sha256=a255c73dc944c7be4c94c43e1cb984fc1130952fc2561dd12967b3a5bfbd59cb (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,823 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-2.0.post1-py3-none-any.whl#sha256=dfd52d7497121a726ff5f31812d5ee871c8dbf80a8a1b538550273662af9b6d7 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,824 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-2.0.dev5-py3-none-any.whl#sha256=97dababe9ee6027d6f1ebdc6ba77284ddfb01f0b1ecb27b3628889ce750511f3 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,824 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-2.0.dev3-py3-none-any.whl#sha256=83314a7d78fedec025db060e1390adcc1478a828ec207befebe528416f51baa2 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,825 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-2.0.dev2-py3-none-any.whl#sha256=c51e9250dd5ec8a6ed4307fdb224f99aa9aaf448f47c5b0f998397c6b191207c (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,825 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-2.0.dev1-py3-none-any.whl#sha256=d4c75b50553c905023987b28df39c243cfb3d69bf9bb452a1da5aec20d037e5e (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,826 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.7-py3-none-any.whl#sha256=6f4e3af1ae4e0e2ffea6cbddc49a6f246b270d0450748d753712d9b8ab990417 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,827 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.6-py3-none-any.whl#sha256=05df2f2e27defb37455d567ba12f2956851cf4ed932020c08a806daf645bd276 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,827 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.5-py3-none-any.whl#sha256=959c094459d2e1d21433588a35a63e2786219a0c0ac461348227c071b496bba8 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,828 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.4-py3-none-any.whl#sha256=def6887f0c94d43b6f165b7b6ce505cbc7ce4875d9711a55e9d45270ee7c7155 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,828 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.3-py3-none-any.whl#sha256=66723d600d846e05a4bea60770ee211bbd8919f46eb975235474f0f2bf351fc3 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,829 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.2-py3-none-any.whl#sha256=a3f7600318fd347e0b1bd82e9c6031a86120f3cd3511ba72ca75c109c0656c24 (from https://www.piwheels.org/simple/bioc/) (requires-python:>=3.6) 2022-04-10T03:21:16,829 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3.1-py3-none-any.whl#sha256=000cb7c70c9816ff52e9b51cc4fccbf95359ee03d9134e3f7ec69ab14cddabf2 (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,830 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.3-py3-none-any.whl#sha256=876a0f57024c3ed9388f698d550e40364d9d86e0a440dbf21ff3ee728ae010fe (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,830 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.2.4-py3-none-any.whl#sha256=524b211e147bbe01267ca14c87df49237ff2b0160026634ba01b64f29c37186d (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,831 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.2.3-py3-none-any.whl#sha256=ec34d13e4ff24e7dfa8a7792ba6aeb39ecc4a952eaa1ba595aeeff7637709253 (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,831 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.1.dev3-py2.py3-none-any.whl#sha256=074919b0d7217736c21be7caca4dbbb3a275c40c9e793daa9106c74370e8a5a9 (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,832 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.1.dev2-py2.py3-none-any.whl#sha256=be862be4bc05209775e41c48ec4f96a6eb09f62606a9396156572574498d354f (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,832 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.1.dev1-py2.py3-none-any.whl#sha256=33e24ee3a59f38357cb019b6edf576afb4c7af09c4b2202424c359f4c0e06241 (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,833 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev30-py2.py3-none-any.whl#sha256=9654e7f5ea243e69999d4fa83c5bc87c8fa4dd7556320fdc911d6b4207e5216b (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,833 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev28-py2.py3-none-any.whl#sha256=e4980eb2a0cad4077da638efa0d76668b591eeb31e0d3dcdcfabda8be93540bf (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,834 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev27-py2.py3-none-any.whl#sha256=200deba814e68e3991967d15f6134e0cc1863671bf3c11606c422bea63addf06 (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,834 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev25-py3-none-any.whl#sha256=213c07bcad58aee36030963380f1db8a4a9e0d0c4de87a05ab0cecf5f034de84 (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,835 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev24-py3-none-any.whl#sha256=3754b64d6ac7b78ff18e6c9afed776861c34bfee3d5c1c8985fdffa99c9db743 (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,835 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev23-py3-none-any.whl#sha256=bd144317a86599b866d9a947683a6fe215ca32883f8a1b219683c0115be6a30d (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,836 Skipping link: No binaries permitted for bioc: https://www.piwheels.org/simple/bioc/bioc-1.0.dev22-py3-none-any.whl#sha256=05187959b16aa034e378039f93dc1d09b2679f2bdff6085e6566fb1c3c3abd90 (from https://www.piwheels.org/simple/bioc/) 2022-04-10T03:21:16,837 Skipping link: not a file: https://www.piwheels.org/simple/bioc/ 2022-04-10T03:21:16,837 Skipping link: not a file: https://pypi.org/simple/bioc/ 2022-04-10T03:21:16,878 Given no hashes to check 1 links for project 'bioc': discarding no candidates 2022-04-10T03:21:16,909 Collecting bioc==2.0.post3 2022-04-10T03:21:16,913 Created temporary directory: /tmp/pip-unpack-4_pwb6i8 2022-04-10T03:21:17,140 Downloading bioc-2.0.post3.tar.gz (26 kB) 2022-04-10T03:21:17,312 Added bioc==2.0.post3 from https://files.pythonhosted.org/packages/51/db/8d3308030b95155753b0c379c98f7c09eba1e092dc6c572ed55775f0e0ec/bioc-2.0.post3.tar.gz#sha256=7e1c70d5520cc7adc425bfcc8b32a0b0ee798f7e4eb71a2173e8fc8e17adb687 to build tracker '/tmp/pip-req-tracker-c2h1io9h' 2022-04-10T03:21:17,326 Created temporary directory: /tmp/pip-build-env-6jnhkpu2 2022-04-10T03:21:17,340 Created temporary directory: /tmp/pip-standalone-pip-1fqsvhrh 2022-04-10T03:21:19,547 Installing build dependencies: started 2022-04-10T03:21:19,549 Running command pip subprocess to install build dependencies 2022-04-10T03:21:29,573 Using pip 22.0.4 from /tmp/pip-standalone-pip-1fqsvhrh/__env_pip__.zip/pip (python 3.7) 2022-04-10T03:21:30,912 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-10T03:21:34,830 Collecting setuptools>=42 2022-04-10T03:21:35,092 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.0.0-py3-none-any.whl (1.1 MB) 2022-04-10T03:21:35,743 Collecting wheel 2022-04-10T03:21:35,780 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-04-10T03:21:40,037 Installing collected packages: wheel, setuptools 2022-04-10T03:21:40,304 Creating /tmp/pip-build-env-6jnhkpu2/overlay/bin 2022-04-10T03:21:40,309 changing mode of /tmp/pip-build-env-6jnhkpu2/overlay/bin/wheel to 755 2022-04-10T03:21:44,768 Successfully installed setuptools-62.0.0 wheel-0.37.1 2022-04-10T03:21:45,387 Installing build dependencies: finished with status 'done' 2022-04-10T03:21:45,413 Getting requirements to build wheel: started 2022-04-10T03:21:45,415 Running command Getting requirements to build wheel 2022-04-10T03:21:47,338 running egg_info 2022-04-10T03:21:47,395 writing manifest file 'src/bioc.egg-info/SOURCES.txt' 2022-04-10T03:21:47,523 Getting requirements to build wheel: finished with status 'done' 2022-04-10T03:21:47,543 Created temporary directory: /tmp/pip-modern-metadata-psnzzg9t 2022-04-10T03:21:47,549 Preparing metadata (pyproject.toml): started 2022-04-10T03:21:47,551 Running command Preparing metadata (pyproject.toml) 2022-04-10T03:21:49,345 running dist_info 2022-04-10T03:21:49,375 creating /tmp/pip-modern-metadata-psnzzg9t/bioc.egg-info 2022-04-10T03:21:49,391 writing manifest file '/tmp/pip-modern-metadata-psnzzg9t/bioc.egg-info/SOURCES.txt' 2022-04-10T03:21:49,424 writing manifest file '/tmp/pip-modern-metadata-psnzzg9t/bioc.egg-info/SOURCES.txt' 2022-04-10T03:21:49,711 Preparing metadata (pyproject.toml): finished with status 'done' 2022-04-10T03:21:49,726 Source in /tmp/pip-wheel-nbg3fo7d/bioc_4b6328823f0d48fb8326d1382f704a4b has version 2.0.post3, which satisfies requirement bioc==2.0.post3 from https://files.pythonhosted.org/packages/51/db/8d3308030b95155753b0c379c98f7c09eba1e092dc6c572ed55775f0e0ec/bioc-2.0.post3.tar.gz#sha256=7e1c70d5520cc7adc425bfcc8b32a0b0ee798f7e4eb71a2173e8fc8e17adb687 2022-04-10T03:21:49,728 Removed bioc==2.0.post3 from https://files.pythonhosted.org/packages/51/db/8d3308030b95155753b0c379c98f7c09eba1e092dc6c572ed55775f0e0ec/bioc-2.0.post3.tar.gz#sha256=7e1c70d5520cc7adc425bfcc8b32a0b0ee798f7e4eb71a2173e8fc8e17adb687 from build tracker '/tmp/pip-req-tracker-c2h1io9h' 2022-04-10T03:21:49,742 Created temporary directory: /tmp/pip-unpack-8v2ijmm1 2022-04-10T03:21:49,743 Building wheels for collected packages: bioc 2022-04-10T03:21:49,752 Created temporary directory: /tmp/pip-wheel-9bkdgl6s 2022-04-10T03:21:49,753 Destination directory: /tmp/pip-wheel-9bkdgl6s 2022-04-10T03:21:49,758 Building wheel for bioc (pyproject.toml): started 2022-04-10T03:21:49,760 Running command Building wheel for bioc (pyproject.toml) 2022-04-10T03:21:51,579 running bdist_wheel 2022-04-10T03:21:51,999 running build 2022-04-10T03:21:52,000 running build_py 2022-04-10T03:21:52,008 creating build 2022-04-10T03:21:52,008 creating build/lib 2022-04-10T03:21:52,009 creating build/lib/bioc 2022-04-10T03:21:52,011 copying src/bioc/__init__.py -> build/lib/bioc 2022-04-10T03:21:52,015 copying src/bioc/validator.py -> build/lib/bioc 2022-04-10T03:21:52,018 copying src/bioc/utils.py -> build/lib/bioc 2022-04-10T03:21:52,022 copying src/bioc/constants.py -> build/lib/bioc 2022-04-10T03:21:52,025 copying src/bioc/biocio.py -> build/lib/bioc 2022-04-10T03:21:52,028 copying src/bioc/biocitertools.py -> build/lib/bioc 2022-04-10T03:21:52,031 copying src/bioc/bioc.py -> build/lib/bioc 2022-04-10T03:21:52,038 creating build/lib/bioc/biocjson 2022-04-10T03:21:52,039 copying src/bioc/biocjson/__init__.py -> build/lib/bioc/biocjson 2022-04-10T03:21:52,043 copying src/bioc/biocjson/encoder.py -> build/lib/bioc/biocjson 2022-04-10T03:21:52,046 copying src/bioc/biocjson/decoder.py -> build/lib/bioc/biocjson 2022-04-10T03:21:52,052 creating build/lib/bioc/brat 2022-04-10T03:21:52,053 copying src/bioc/brat/__init__.py -> build/lib/bioc/brat 2022-04-10T03:21:52,057 copying src/bioc/brat/validator.py -> build/lib/bioc/brat 2022-04-10T03:21:52,060 copying src/bioc/brat/brat.py -> build/lib/bioc/brat 2022-04-10T03:21:52,064 copying src/bioc/brat/encoder.py -> build/lib/bioc/brat 2022-04-10T03:21:52,067 copying src/bioc/brat/decoder.py -> build/lib/bioc/brat 2022-04-10T03:21:52,073 creating build/lib/bioc/biocxml 2022-04-10T03:21:52,074 copying src/bioc/biocxml/decoder2.py -> build/lib/bioc/biocxml 2022-04-10T03:21:52,078 copying src/bioc/biocxml/__init__.py -> build/lib/bioc/biocxml 2022-04-10T03:21:52,081 copying src/bioc/biocxml/encoder2.py -> build/lib/bioc/biocxml 2022-04-10T03:21:52,085 copying src/bioc/biocxml/encoder.py -> build/lib/bioc/biocxml 2022-04-10T03:21:52,089 copying src/bioc/biocxml/decoder.py -> build/lib/bioc/biocxml 2022-04-10T03:21:52,094 creating build/lib/bioc/pubtator 2022-04-10T03:21:52,096 copying src/bioc/pubtator/pubtator.py -> build/lib/bioc/pubtator 2022-04-10T03:21:52,099 copying src/bioc/pubtator/__init__.py -> build/lib/bioc/pubtator 2022-04-10T03:21:52,102 copying src/bioc/pubtator/validator.py -> build/lib/bioc/pubtator 2022-04-10T03:21:52,105 copying src/bioc/pubtator/encoder.py -> build/lib/bioc/pubtator 2022-04-10T03:21:52,108 copying src/bioc/pubtator/decoder.py -> build/lib/bioc/pubtator 2022-04-10T03:21:52,112 creating build/lib/bioc/tools 2022-04-10T03:21:52,113 copying src/bioc/tools/split.py -> build/lib/bioc/tools 2022-04-10T03:21:52,116 copying src/bioc/tools/__init__.py -> build/lib/bioc/tools 2022-04-10T03:21:52,119 copying src/bioc/tools/brat2bioc.py -> build/lib/bioc/tools 2022-04-10T03:21:52,122 copying src/bioc/tools/pubtator2bioc.py -> build/lib/bioc/tools 2022-04-10T03:21:52,146 running install 2022-04-10T03:21:52,209 running install_lib 2022-04-10T03:21:52,216 creating build/bdist.linux-armv7l 2022-04-10T03:21:52,217 creating build/bdist.linux-armv7l/wheel 2022-04-10T03:21:52,220 creating build/bdist.linux-armv7l/wheel/bioc 2022-04-10T03:21:52,223 creating build/bdist.linux-armv7l/wheel/bioc/biocjson 2022-04-10T03:21:52,240 creating build/bdist.linux-armv7l/wheel/bioc/brat 2022-04-10T03:21:52,271 creating build/bdist.linux-armv7l/wheel/bioc/biocxml 2022-04-10T03:21:52,292 creating build/bdist.linux-armv7l/wheel/bioc/pubtator 2022-04-10T03:21:52,313 creating build/bdist.linux-armv7l/wheel/bioc/tools 2022-04-10T03:21:52,334 running install_egg_info 2022-04-10T03:21:52,372 running egg_info 2022-04-10T03:21:52,410 writing manifest file 'src/bioc.egg-info/SOURCES.txt' 2022-04-10T03:21:52,413 Copying src/bioc.egg-info to build/bdist.linux-armv7l/wheel/bioc-2.0.post3-py3.7.egg-info 2022-04-10T03:21:52,435 running install_scripts 2022-04-10T03:21:52,907 Building wheel for bioc (pyproject.toml): finished with status 'done' 2022-04-10T03:21:52,921 Created wheel for bioc: filename=bioc-2.0.post3-py3-none-any.whl size=37198 sha256=118f7b8842f32ff1d657dc58d6ee4e62fa4cebb20a9a79fbba34d4b0d3fe1489 2022-04-10T03:21:52,923 Stored in directory: /tmp/pip-ephem-wheel-cache-40hw5lva/wheels/75/3e/23/edb9dde4707d9bfb7c368225ecfd573eddbcf5b0e2597b052d 2022-04-10T03:21:52,948 Successfully built bioc 2022-04-10T03:21:52,957 Removed build tracker: '/tmp/pip-req-tracker-c2h1io9h'