2022-04-11T13:33:23,202 Created temporary directory: /tmp/pip-ephem-wheel-cache-o7sdx_ww
2022-04-11T13:33:23,208 Created temporary directory: /tmp/pip-req-tracker-en4a1u_l
2022-04-11T13:33:23,209 Initialized build tracking at /tmp/pip-req-tracker-en4a1u_l
2022-04-11T13:33:23,210 Created build tracker: /tmp/pip-req-tracker-en4a1u_l
2022-04-11T13:33:23,210 Entered build tracker: /tmp/pip-req-tracker-en4a1u_l
2022-04-11T13:33:23,212 Created temporary directory: /tmp/pip-wheel-xqjgvfvf
2022-04-11T13:33:23,272 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-11T13:33:23,275 2 location(s) to search for versions of pyfread:
2022-04-11T13:33:23,275 * https://pypi.org/simple/pyfread/
2022-04-11T13:33:23,275 * https://www.piwheels.org/simple/pyfread/
2022-04-11T13:33:23,276 Fetching project page and analyzing links: https://pypi.org/simple/pyfread/
2022-04-11T13:33:23,278 Getting page https://pypi.org/simple/pyfread/
2022-04-11T13:33:23,282 Found index url https://pypi.org/simple
2022-04-11T13:33:23,601   Skipping link: No binaries permitted for pyfread: https://files.pythonhosted.org/packages/00/72/123a1c64be9d8b8d7200ea8de083253c90531166d7ffc7dc1cf1fc7808e0/pyfread-1.0-py3-none-any.whl#sha256=ac804439467379c91fce1004f30812c869a61a0c07adc81702c4bda7aba0432b (from https://pypi.org/simple/pyfread/)
2022-04-11T13:33:23,602   Found link https://files.pythonhosted.org/packages/58/2d/df8caaf0fafb968208278be5151401f845b39d25152d8e0673dfa4916622/pyfread-1.0.tar.gz#sha256=82ff68454ac51f75bda03d87e92e4d6874f8c20e829d490389d2ed3215810e62 (from https://pypi.org/simple/pyfread/), version: 1.0
2022-04-11T13:33:23,603   Skipping link: No binaries permitted for pyfread: https://files.pythonhosted.org/packages/f2/a5/386600dab6a0fb3e3fcbfb78bb496b4f61a12e8dbbe59091570fffae67a1/pyfread-1.5-py3-none-any.whl#sha256=7ae3fde2b508da95b905665d2463ca0451c03810a2ff382f516f5f08566b41d2 (from https://pypi.org/simple/pyfread/)
2022-04-11T13:33:23,604   Found link https://files.pythonhosted.org/packages/37/a2/aaa2abf97210681f5f1e08f2f4861bd8627454c0daa92b11dd6fc4813078/pyfread-1.5.tar.gz#sha256=8260a54d85929a2e4d030cab407c02914253d5a2221b5ad895cf515149290ac9 (from https://pypi.org/simple/pyfread/), version: 1.5
2022-04-11T13:33:23,604 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyfread/
2022-04-11T13:33:23,605 Getting page https://www.piwheels.org/simple/pyfread/
2022-04-11T13:33:23,608 Found index url https://www.piwheels.org/simple
2022-04-11T13:33:23,863 Given no hashes to check 1 links for project 'pyfread': discarding no candidates
2022-04-11T13:33:23,895 Collecting pyfread==1.0
2022-04-11T13:33:23,898   Created temporary directory: /tmp/pip-unpack-n2k0x2a3
2022-04-11T13:33:24,311   Downloading pyfread-1.0.tar.gz (1.9 MB)
2022-04-11T13:33:26,627   Added pyfread==1.0 from https://files.pythonhosted.org/packages/58/2d/df8caaf0fafb968208278be5151401f845b39d25152d8e0673dfa4916622/pyfread-1.0.tar.gz#sha256=82ff68454ac51f75bda03d87e92e4d6874f8c20e829d490389d2ed3215810e62 to build tracker '/tmp/pip-req-tracker-en4a1u_l'
2022-04-11T13:33:26,630     Running setup.py (path:/tmp/pip-wheel-xqjgvfvf/pyfread_c02ef15cfac6423482039a603d7e60d0/setup.py) egg_info for package pyfread
2022-04-11T13:33:26,632     Created temporary directory: /tmp/pip-pip-egg-info-o_b1r79_
2022-04-11T13:33:26,634     Running command python setup.py egg_info
2022-04-11T13:33:29,297     running egg_info
2022-04-11T13:33:29,302     creating /tmp/pip-pip-egg-info-o_b1r79_/pyfread.egg-info
2022-04-11T13:33:29,306     writing dependency_links to /tmp/pip-pip-egg-info-o_b1r79_/pyfread.egg-info/dependency_links.txt
2022-04-11T13:33:29,309     writing top-level names to /tmp/pip-pip-egg-info-o_b1r79_/pyfread.egg-info/top_level.txt
2022-04-11T13:33:29,311     writing /tmp/pip-pip-egg-info-o_b1r79_/pyfread.egg-info/PKG-INFO
2022-04-11T13:33:29,316     writing manifest file '/tmp/pip-pip-egg-info-o_b1r79_/pyfread.egg-info/SOURCES.txt'
2022-04-11T13:33:29,659     reading manifest file '/tmp/pip-pip-egg-info-o_b1r79_/pyfread.egg-info/SOURCES.txt'
2022-04-11T13:33:29,668     writing manifest file '/tmp/pip-pip-egg-info-o_b1r79_/pyfread.egg-info/SOURCES.txt'
2022-04-11T13:33:29,880   Source in /tmp/pip-wheel-xqjgvfvf/pyfread_c02ef15cfac6423482039a603d7e60d0 has version 1.0, which satisfies requirement pyfread==1.0 from https://files.pythonhosted.org/packages/58/2d/df8caaf0fafb968208278be5151401f845b39d25152d8e0673dfa4916622/pyfread-1.0.tar.gz#sha256=82ff68454ac51f75bda03d87e92e4d6874f8c20e829d490389d2ed3215810e62
2022-04-11T13:33:29,882   Removed pyfread==1.0 from https://files.pythonhosted.org/packages/58/2d/df8caaf0fafb968208278be5151401f845b39d25152d8e0673dfa4916622/pyfread-1.0.tar.gz#sha256=82ff68454ac51f75bda03d87e92e4d6874f8c20e829d490389d2ed3215810e62 from build tracker '/tmp/pip-req-tracker-en4a1u_l'
2022-04-11T13:33:29,890 Created temporary directory: /tmp/pip-unpack-3x62zgfh
2022-04-11T13:33:29,891 Building wheels for collected packages: pyfread
2022-04-11T13:33:29,899   Created temporary directory: /tmp/pip-wheel-hnf7tsuq
2022-04-11T13:33:29,900   Building wheel for pyfread (setup.py): started
2022-04-11T13:33:29,901   Destination directory: /tmp/pip-wheel-hnf7tsuq
2022-04-11T13:33:29,901   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xqjgvfvf/pyfread_c02ef15cfac6423482039a603d7e60d0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xqjgvfvf/pyfread_c02ef15cfac6423482039a603d7e60d0/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hnf7tsuq
2022-04-11T13:33:32,617   running bdist_wheel
2022-04-11T13:33:32,633   running build
2022-04-11T13:33:32,633   running build_py
2022-04-11T13:33:32,962   creating build
2022-04-11T13:33:32,963   creating build/lib
2022-04-11T13:33:32,964   creating build/lib/pyfread
2022-04-11T13:33:32,967   copying pyfread/shell.py -> build/lib/pyfread
2022-04-11T13:33:32,972   copying pyfread/__init__.py -> build/lib/pyfread
2022-04-11T13:33:32,975   copying pyfread/common.py -> build/lib/pyfread
2022-04-11T13:33:32,982   creating build/lib/pyfread/loops
2022-04-11T13:33:32,983   copying pyfread/loops/fread.py -> build/lib/pyfread/loops
2022-04-11T13:33:32,990   copying pyfread/loops/multifread.py -> build/lib/pyfread/loops
2022-04-11T13:33:32,996   copying pyfread/loops/esst.py -> build/lib/pyfread/loops
2022-04-11T13:33:33,002   copying pyfread/loops/ccd.py -> build/lib/pyfread/loops
2022-04-11T13:33:33,006   copying pyfread/loops/freaddb.py -> build/lib/pyfread/loops
2022-04-11T13:33:33,012   copying pyfread/loops/__init__.py -> build/lib/pyfread/loops
2022-04-11T13:33:33,017   copying pyfread/loops/loopmodel.py -> build/lib/pyfread/loops
2022-04-11T13:33:33,028   creating build/lib/pyfread/util
2022-04-11T13:33:33,031   copying pyfread/util/geohash.py -> build/lib/pyfread/util
2022-04-11T13:33:33,036   copying pyfread/util/protein.py -> build/lib/pyfread/util
2022-04-11T13:33:33,040   copying pyfread/util/residue.py -> build/lib/pyfread/util
2022-04-11T13:33:33,046   copying pyfread/util/pdb3d.py -> build/lib/pyfread/util
2022-04-11T13:33:33,052   copying pyfread/util/ali.py -> build/lib/pyfread/util
2022-04-11T13:33:33,059   copying pyfread/util/getpdb.py -> build/lib/pyfread/util
2022-04-11T13:33:33,062   copying pyfread/util/__init__.py -> build/lib/pyfread/util
2022-04-11T13:33:33,066   copying pyfread/util/gaps.py -> build/lib/pyfread/util
2022-04-11T13:33:33,071   copying pyfread/util/seq.py -> build/lib/pyfread/util
2022-04-11T13:33:33,074   copying pyfread/util/pdb.py -> build/lib/pyfread/util
2022-04-11T13:33:33,083   creating build/lib/pyfread/cpp
2022-04-11T13:33:33,085   copying pyfread/cpp/atom2coord.py -> build/lib/pyfread/cpp
2022-04-11T13:33:33,089   copying pyfread/cpp/__init__.py -> build/lib/pyfread/cpp
2022-04-11T13:33:33,098   running build_scripts
2022-04-11T13:33:33,099   creating build/scripts-3.5
2022-04-11T13:33:33,101   copying pyfread/bin/esst.txt -> build/scripts-3.5
2022-04-11T13:33:33,108   copying and adjusting pyfread/bin/fread_db_add -> build/scripts-3.5
2022-04-11T13:33:33,112   copying and adjusting pyfread/bin/fread_db_optimise -> build/scripts-3.5
2022-04-11T13:33:33,116   copying and adjusting pyfread/bin/multifread -> build/scripts-3.5
2022-04-11T13:33:33,121   copying and adjusting pyfread/bin/multifread.orig -> build/scripts-3.5
2022-04-11T13:33:33,126   copying and adjusting pyfread/bin/pyfread -> build/scripts-3.5
2022-04-11T13:33:33,130   changing mode of build/scripts-3.5/fread_db_add from 644 to 755
2022-04-11T13:33:33,131   changing mode of build/scripts-3.5/fread_db_optimise from 644 to 755
2022-04-11T13:33:33,132   changing mode of build/scripts-3.5/multifread from 644 to 755
2022-04-11T13:33:33,132   changing mode of build/scripts-3.5/multifread.orig from 644 to 755
2022-04-11T13:33:33,133   changing mode of build/scripts-3.5/pyfread from 644 to 755
2022-04-11T13:33:33,140   installing to build/bdist.linux-armv7l/wheel
2022-04-11T13:33:33,141   running install
2022-04-11T13:33:33,143   running install_lib
2022-04-11T13:33:33,150   creating build/bdist.linux-armv7l
2022-04-11T13:33:33,151   creating build/bdist.linux-armv7l/wheel
2022-04-11T13:33:33,154   creating build/bdist.linux-armv7l/wheel/pyfread
2022-04-11T13:33:33,158   creating build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:33:33,160   copying build/lib/pyfread/loops/fread.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:33:33,168   copying build/lib/pyfread/loops/multifread.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:33:33,174   copying build/lib/pyfread/loops/esst.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:33:33,180   copying build/lib/pyfread/loops/ccd.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:33:33,185   copying build/lib/pyfread/loops/freaddb.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:33:33,190   copying build/lib/pyfread/loops/__init__.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:33:33,194   copying build/lib/pyfread/loops/loopmodel.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:33:33,200   copying build/lib/pyfread/shell.py -> build/bdist.linux-armv7l/wheel/pyfread
2022-04-11T13:33:33,207   creating build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,209   copying build/lib/pyfread/util/geohash.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,214   copying build/lib/pyfread/util/protein.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,221   copying build/lib/pyfread/util/residue.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,228   copying build/lib/pyfread/util/pdb3d.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,236   copying build/lib/pyfread/util/ali.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,243   copying build/lib/pyfread/util/getpdb.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,247   copying build/lib/pyfread/util/__init__.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,251   copying build/lib/pyfread/util/gaps.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,256   copying build/lib/pyfread/util/seq.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,260   copying build/lib/pyfread/util/pdb.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:33:33,269   copying build/lib/pyfread/__init__.py -> build/bdist.linux-armv7l/wheel/pyfread
2022-04-11T13:33:33,274   creating build/bdist.linux-armv7l/wheel/pyfread/cpp
2022-04-11T13:33:33,276   copying build/lib/pyfread/cpp/atom2coord.py -> build/bdist.linux-armv7l/wheel/pyfread/cpp
2022-04-11T13:33:33,280   copying build/lib/pyfread/cpp/__init__.py -> build/bdist.linux-armv7l/wheel/pyfread/cpp
2022-04-11T13:33:33,283   copying build/lib/pyfread/common.py -> build/bdist.linux-armv7l/wheel/pyfread
2022-04-11T13:33:33,288   running install_egg_info
2022-04-11T13:33:33,331   running egg_info
2022-04-11T13:33:33,333   writing pyfread.egg-info/PKG-INFO
2022-04-11T13:33:33,337   writing dependency_links to pyfread.egg-info/dependency_links.txt
2022-04-11T13:33:33,341   writing top-level names to pyfread.egg-info/top_level.txt
2022-04-11T13:33:33,355   reading manifest file 'pyfread.egg-info/SOURCES.txt'
2022-04-11T13:33:33,385   writing manifest file 'pyfread.egg-info/SOURCES.txt'
2022-04-11T13:33:33,388   Copying pyfread.egg-info to build/bdist.linux-armv7l/wheel/pyfread-1.0-py3.5.egg-info
2022-04-11T13:33:33,407   running install_scripts
2022-04-11T13:33:33,541   creating build/bdist.linux-armv7l/wheel/pyfread-1.0.data
2022-04-11T13:33:33,542   creating build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts
2022-04-11T13:33:33,544   copying build/scripts-3.5/multifread -> build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts
2022-04-11T13:33:33,550   copying build/scripts-3.5/esst.txt -> build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts
2022-04-11T13:33:33,555   copying build/scripts-3.5/fread_db_add -> build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts
2022-04-11T13:33:33,560   copying build/scripts-3.5/fread_db_optimise -> build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts
2022-04-11T13:33:33,564   copying build/scripts-3.5/multifread.orig -> build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts
2022-04-11T13:33:33,570   copying build/scripts-3.5/pyfread -> build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts
2022-04-11T13:33:33,576   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts/multifread to 755
2022-04-11T13:33:33,577   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts/esst.txt to 755
2022-04-11T13:33:33,578   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts/fread_db_add to 755
2022-04-11T13:33:33,580   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts/fread_db_optimise to 755
2022-04-11T13:33:33,581   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts/multifread.orig to 755
2022-04-11T13:33:33,582   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.0.data/scripts/pyfread to 755
2022-04-11T13:33:33,618   creating build/bdist.linux-armv7l/wheel/pyfread-1.0.dist-info/WHEEL
2022-04-11T13:33:34,062   Building wheel for pyfread (setup.py): finished with status 'done'
2022-04-11T13:33:34,068   Created wheel for pyfread: filename=pyfread-1.0-py3-none-any.whl size=92697 sha256=dc6b37d677d60145b1d48a91b6da1b41a941c353dd3576e1d34a72ca0579589f
2022-04-11T13:33:34,069   Stored in directory: /tmp/pip-ephem-wheel-cache-o7sdx_ww/wheels/34/c6/80/581da7df98da8fbf566565f7739e136ad52a8cc27bcc17df6d
2022-04-11T13:33:34,087 Successfully built pyfread
2022-04-11T13:33:34,108 Removed build tracker: '/tmp/pip-req-tracker-en4a1u_l'