2022-04-11T13:40:27,817 Created temporary directory: /tmp/pip-ephem-wheel-cache-p54ah_kb
2022-04-11T13:40:27,823 Created temporary directory: /tmp/pip-req-tracker-bldlpsa_
2022-04-11T13:40:27,824 Initialized build tracking at /tmp/pip-req-tracker-bldlpsa_
2022-04-11T13:40:27,825 Created build tracker: /tmp/pip-req-tracker-bldlpsa_
2022-04-11T13:40:27,825 Entered build tracker: /tmp/pip-req-tracker-bldlpsa_
2022-04-11T13:40:27,826 Created temporary directory: /tmp/pip-wheel-pabe9867
2022-04-11T13:40:27,896 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-11T13:40:27,900 2 location(s) to search for versions of pyfread:
2022-04-11T13:40:27,900 * https://pypi.org/simple/pyfread/
2022-04-11T13:40:27,900 * https://www.piwheels.org/simple/pyfread/
2022-04-11T13:40:27,901 Fetching project page and analyzing links: https://pypi.org/simple/pyfread/
2022-04-11T13:40:27,903 Getting page https://pypi.org/simple/pyfread/
2022-04-11T13:40:27,907 Found index url https://pypi.org/simple
2022-04-11T13:40:28,139   Skipping link: No binaries permitted for pyfread: https://files.pythonhosted.org/packages/00/72/123a1c64be9d8b8d7200ea8de083253c90531166d7ffc7dc1cf1fc7808e0/pyfread-1.0-py3-none-any.whl#sha256=ac804439467379c91fce1004f30812c869a61a0c07adc81702c4bda7aba0432b (from https://pypi.org/simple/pyfread/)
2022-04-11T13:40:28,140   Found link https://files.pythonhosted.org/packages/58/2d/df8caaf0fafb968208278be5151401f845b39d25152d8e0673dfa4916622/pyfread-1.0.tar.gz#sha256=82ff68454ac51f75bda03d87e92e4d6874f8c20e829d490389d2ed3215810e62 (from https://pypi.org/simple/pyfread/), version: 1.0
2022-04-11T13:40:28,140   Skipping link: No binaries permitted for pyfread: https://files.pythonhosted.org/packages/f2/a5/386600dab6a0fb3e3fcbfb78bb496b4f61a12e8dbbe59091570fffae67a1/pyfread-1.5-py3-none-any.whl#sha256=7ae3fde2b508da95b905665d2463ca0451c03810a2ff382f516f5f08566b41d2 (from https://pypi.org/simple/pyfread/)
2022-04-11T13:40:28,141   Found link https://files.pythonhosted.org/packages/37/a2/aaa2abf97210681f5f1e08f2f4861bd8627454c0daa92b11dd6fc4813078/pyfread-1.5.tar.gz#sha256=8260a54d85929a2e4d030cab407c02914253d5a2221b5ad895cf515149290ac9 (from https://pypi.org/simple/pyfread/), version: 1.5
2022-04-11T13:40:28,142 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyfread/
2022-04-11T13:40:28,142 Getting page https://www.piwheels.org/simple/pyfread/
2022-04-11T13:40:28,145 Found index url https://www.piwheels.org/simple
2022-04-11T13:40:28,394   Skipping link: No binaries permitted for pyfread: https://www.piwheels.org/simple/pyfread/pyfread-1.0-py3-none-any.whl#sha256=dc6b37d677d60145b1d48a91b6da1b41a941c353dd3576e1d34a72ca0579589f (from https://www.piwheels.org/simple/pyfread/)
2022-04-11T13:40:28,423 Given no hashes to check 1 links for project 'pyfread': discarding no candidates
2022-04-11T13:40:28,455 Collecting pyfread==1.5
2022-04-11T13:40:28,459   Created temporary directory: /tmp/pip-unpack-m16lh1y4
2022-04-11T13:40:30,522   Downloading pyfread-1.5.tar.gz (1.9 MB)
2022-04-11T13:40:32,724   Added pyfread==1.5 from https://files.pythonhosted.org/packages/37/a2/aaa2abf97210681f5f1e08f2f4861bd8627454c0daa92b11dd6fc4813078/pyfread-1.5.tar.gz#sha256=8260a54d85929a2e4d030cab407c02914253d5a2221b5ad895cf515149290ac9 to build tracker '/tmp/pip-req-tracker-bldlpsa_'
2022-04-11T13:40:32,727     Running setup.py (path:/tmp/pip-wheel-pabe9867/pyfread_0279e332b26340099314e1062c82631c/setup.py) egg_info for package pyfread
2022-04-11T13:40:32,729     Created temporary directory: /tmp/pip-pip-egg-info-r41uiw6j
2022-04-11T13:40:32,731     Running command python setup.py egg_info
2022-04-11T13:40:35,528     running egg_info
2022-04-11T13:40:35,534     creating /tmp/pip-pip-egg-info-r41uiw6j/pyfread.egg-info
2022-04-11T13:40:35,536     writing dependency_links to /tmp/pip-pip-egg-info-r41uiw6j/pyfread.egg-info/dependency_links.txt
2022-04-11T13:40:35,540     writing top-level names to /tmp/pip-pip-egg-info-r41uiw6j/pyfread.egg-info/top_level.txt
2022-04-11T13:40:35,544     writing /tmp/pip-pip-egg-info-r41uiw6j/pyfread.egg-info/PKG-INFO
2022-04-11T13:40:35,549     writing manifest file '/tmp/pip-pip-egg-info-r41uiw6j/pyfread.egg-info/SOURCES.txt'
2022-04-11T13:40:35,916     reading manifest file '/tmp/pip-pip-egg-info-r41uiw6j/pyfread.egg-info/SOURCES.txt'
2022-04-11T13:40:35,925     writing manifest file '/tmp/pip-pip-egg-info-r41uiw6j/pyfread.egg-info/SOURCES.txt'
2022-04-11T13:40:36,141   Source in /tmp/pip-wheel-pabe9867/pyfread_0279e332b26340099314e1062c82631c has version 1.5, which satisfies requirement pyfread==1.5 from https://files.pythonhosted.org/packages/37/a2/aaa2abf97210681f5f1e08f2f4861bd8627454c0daa92b11dd6fc4813078/pyfread-1.5.tar.gz#sha256=8260a54d85929a2e4d030cab407c02914253d5a2221b5ad895cf515149290ac9
2022-04-11T13:40:36,143   Removed pyfread==1.5 from https://files.pythonhosted.org/packages/37/a2/aaa2abf97210681f5f1e08f2f4861bd8627454c0daa92b11dd6fc4813078/pyfread-1.5.tar.gz#sha256=8260a54d85929a2e4d030cab407c02914253d5a2221b5ad895cf515149290ac9 from build tracker '/tmp/pip-req-tracker-bldlpsa_'
2022-04-11T13:40:36,150 Created temporary directory: /tmp/pip-unpack-e0mmksim
2022-04-11T13:40:36,151 Building wheels for collected packages: pyfread
2022-04-11T13:40:36,160   Created temporary directory: /tmp/pip-wheel-vmj__zrn
2022-04-11T13:40:36,161   Building wheel for pyfread (setup.py): started
2022-04-11T13:40:36,162   Destination directory: /tmp/pip-wheel-vmj__zrn
2022-04-11T13:40:36,162   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pabe9867/pyfread_0279e332b26340099314e1062c82631c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pabe9867/pyfread_0279e332b26340099314e1062c82631c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vmj__zrn
2022-04-11T13:40:38,851   running bdist_wheel
2022-04-11T13:40:38,866   running build
2022-04-11T13:40:38,867   running build_py
2022-04-11T13:40:39,194   creating build
2022-04-11T13:40:39,195   creating build/lib
2022-04-11T13:40:39,196   creating build/lib/pyfread
2022-04-11T13:40:39,199   copying pyfread/shell.py -> build/lib/pyfread
2022-04-11T13:40:39,204   copying pyfread/__init__.py -> build/lib/pyfread
2022-04-11T13:40:39,208   copying pyfread/common.py -> build/lib/pyfread
2022-04-11T13:40:39,217   creating build/lib/pyfread/loops
2022-04-11T13:40:39,219   copying pyfread/loops/ccd.py -> build/lib/pyfread/loops
2022-04-11T13:40:39,226   copying pyfread/loops/fread.py -> build/lib/pyfread/loops
2022-04-11T13:40:39,234   copying pyfread/loops/__init__.py -> build/lib/pyfread/loops
2022-04-11T13:40:39,237   copying pyfread/loops/esst.py -> build/lib/pyfread/loops
2022-04-11T13:40:39,243   copying pyfread/loops/freaddb.py -> build/lib/pyfread/loops
2022-04-11T13:40:39,248   copying pyfread/loops/multifread.py -> build/lib/pyfread/loops
2022-04-11T13:40:39,255   copying pyfread/loops/loopmodel.py -> build/lib/pyfread/loops
2022-04-11T13:40:39,266   creating build/lib/pyfread/util
2022-04-11T13:40:39,269   copying pyfread/util/protein.py -> build/lib/pyfread/util
2022-04-11T13:40:39,274   copying pyfread/util/geohash.py -> build/lib/pyfread/util
2022-04-11T13:40:39,279   copying pyfread/util/seq.py -> build/lib/pyfread/util
2022-04-11T13:40:39,283   copying pyfread/util/__init__.py -> build/lib/pyfread/util
2022-04-11T13:40:39,287   copying pyfread/util/gaps.py -> build/lib/pyfread/util
2022-04-11T13:40:39,292   copying pyfread/util/pdb.py -> build/lib/pyfread/util
2022-04-11T13:40:39,302   copying pyfread/util/pdb3d.py -> build/lib/pyfread/util
2022-04-11T13:40:39,310   copying pyfread/util/getpdb.py -> build/lib/pyfread/util
2022-04-11T13:40:39,315   copying pyfread/util/residue.py -> build/lib/pyfread/util
2022-04-11T13:40:39,322   copying pyfread/util/ali.py -> build/lib/pyfread/util
2022-04-11T13:40:39,332   creating build/lib/pyfread/cpp
2022-04-11T13:40:39,335   copying pyfread/cpp/atom2coord.py -> build/lib/pyfread/cpp
2022-04-11T13:40:39,340   copying pyfread/cpp/__init__.py -> build/lib/pyfread/cpp
2022-04-11T13:40:39,354   running build_scripts
2022-04-11T13:40:39,355   creating build/scripts-3.5
2022-04-11T13:40:39,358   copying pyfread/bin/esst.txt -> build/scripts-3.5
2022-04-11T13:40:39,365   copying and adjusting pyfread/bin/fread_db_add -> build/scripts-3.5
2022-04-11T13:40:39,369   copying and adjusting pyfread/bin/fread_db_optimise -> build/scripts-3.5
2022-04-11T13:40:39,373   copying and adjusting pyfread/bin/multifread -> build/scripts-3.5
2022-04-11T13:40:39,380   copying and adjusting pyfread/bin/multifread.orig -> build/scripts-3.5
2022-04-11T13:40:39,388   copying and adjusting pyfread/bin/pyfread -> build/scripts-3.5
2022-04-11T13:40:39,394   changing mode of build/scripts-3.5/fread_db_add from 644 to 755
2022-04-11T13:40:39,394   changing mode of build/scripts-3.5/fread_db_optimise from 644 to 755
2022-04-11T13:40:39,395   changing mode of build/scripts-3.5/multifread from 644 to 755
2022-04-11T13:40:39,396   changing mode of build/scripts-3.5/multifread.orig from 644 to 755
2022-04-11T13:40:39,397   changing mode of build/scripts-3.5/pyfread from 644 to 755
2022-04-11T13:40:39,404   installing to build/bdist.linux-armv7l/wheel
2022-04-11T13:40:39,404   running install
2022-04-11T13:40:39,406   running install_lib
2022-04-11T13:40:39,414   creating build/bdist.linux-armv7l
2022-04-11T13:40:39,415   creating build/bdist.linux-armv7l/wheel
2022-04-11T13:40:39,419   creating build/bdist.linux-armv7l/wheel/pyfread
2022-04-11T13:40:39,421   copying build/lib/pyfread/shell.py -> build/bdist.linux-armv7l/wheel/pyfread
2022-04-11T13:40:39,428   creating build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,429   copying build/lib/pyfread/util/protein.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,435   copying build/lib/pyfread/util/geohash.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,442   copying build/lib/pyfread/util/seq.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,447   copying build/lib/pyfread/util/__init__.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,453   copying build/lib/pyfread/util/gaps.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,459   copying build/lib/pyfread/util/pdb.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,469   copying build/lib/pyfread/util/pdb3d.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,478   copying build/lib/pyfread/util/getpdb.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,483   copying build/lib/pyfread/util/residue.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,490   copying build/lib/pyfread/util/ali.py -> build/bdist.linux-armv7l/wheel/pyfread/util
2022-04-11T13:40:39,500   creating build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:40:39,503   copying build/lib/pyfread/loops/ccd.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:40:39,510   copying build/lib/pyfread/loops/fread.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:40:39,518   copying build/lib/pyfread/loops/__init__.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:40:39,524   copying build/lib/pyfread/loops/esst.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:40:39,531   copying build/lib/pyfread/loops/freaddb.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:40:39,538   copying build/lib/pyfread/loops/multifread.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:40:39,546   copying build/lib/pyfread/loops/loopmodel.py -> build/bdist.linux-armv7l/wheel/pyfread/loops
2022-04-11T13:40:39,554   copying build/lib/pyfread/__init__.py -> build/bdist.linux-armv7l/wheel/pyfread
2022-04-11T13:40:39,559   copying build/lib/pyfread/common.py -> build/bdist.linux-armv7l/wheel/pyfread
2022-04-11T13:40:39,567   creating build/bdist.linux-armv7l/wheel/pyfread/cpp
2022-04-11T13:40:39,570   copying build/lib/pyfread/cpp/atom2coord.py -> build/bdist.linux-armv7l/wheel/pyfread/cpp
2022-04-11T13:40:39,576   copying build/lib/pyfread/cpp/__init__.py -> build/bdist.linux-armv7l/wheel/pyfread/cpp
2022-04-11T13:40:39,579   running install_egg_info
2022-04-11T13:40:39,630   running egg_info
2022-04-11T13:40:39,631   writing dependency_links to pyfread.egg-info/dependency_links.txt
2022-04-11T13:40:39,635   writing top-level names to pyfread.egg-info/top_level.txt
2022-04-11T13:40:39,637   writing pyfread.egg-info/PKG-INFO
2022-04-11T13:40:39,653   reading manifest file 'pyfread.egg-info/SOURCES.txt'
2022-04-11T13:40:39,683   writing manifest file 'pyfread.egg-info/SOURCES.txt'
2022-04-11T13:40:39,686   Copying pyfread.egg-info to build/bdist.linux-armv7l/wheel/pyfread-1.5-py3.5.egg-info
2022-04-11T13:40:39,705   running install_scripts
2022-04-11T13:40:39,839   creating build/bdist.linux-armv7l/wheel/pyfread-1.5.data
2022-04-11T13:40:39,840   creating build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts
2022-04-11T13:40:39,842   copying build/scripts-3.5/multifread -> build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts
2022-04-11T13:40:39,848   copying build/scripts-3.5/multifread.orig -> build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts
2022-04-11T13:40:39,853   copying build/scripts-3.5/fread_db_optimise -> build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts
2022-04-11T13:40:39,858   copying build/scripts-3.5/esst.txt -> build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts
2022-04-11T13:40:39,865   copying build/scripts-3.5/pyfread -> build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts
2022-04-11T13:40:39,873   copying build/scripts-3.5/fread_db_add -> build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts
2022-04-11T13:40:39,878   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts/multifread to 755
2022-04-11T13:40:39,879   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts/multifread.orig to 755
2022-04-11T13:40:39,881   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts/fread_db_optimise to 755
2022-04-11T13:40:39,882   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts/esst.txt to 755
2022-04-11T13:40:39,883   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts/pyfread to 755
2022-04-11T13:40:39,885   changing mode of build/bdist.linux-armv7l/wheel/pyfread-1.5.data/scripts/fread_db_add to 755
2022-04-11T13:40:39,921   creating build/bdist.linux-armv7l/wheel/pyfread-1.5.dist-info/WHEEL
2022-04-11T13:40:40,371   Building wheel for pyfread (setup.py): finished with status 'done'
2022-04-11T13:40:40,376   Created wheel for pyfread: filename=pyfread-1.5-py3-none-any.whl size=92703 sha256=ac87822946d215c18d9c78bf09a0044a0c7ad15e54094400aff9b6e5feafd9a8
2022-04-11T13:40:40,377   Stored in directory: /tmp/pip-ephem-wheel-cache-p54ah_kb/wheels/86/b4/66/9670433abd2e67a5f53e21bc639d84c3194bf3ed5cf0009a33
2022-04-11T13:40:40,397 Successfully built pyfread
2022-04-11T13:40:40,419 Removed build tracker: '/tmp/pip-req-tracker-bldlpsa_'