2022-04-11T18:03:48,240 Created temporary directory: /tmp/pip-ephem-wheel-cache-u591orf2
2022-04-11T18:03:48,246 Created temporary directory: /tmp/pip-req-tracker-2w4ey4pt
2022-04-11T18:03:48,247 Initialized build tracking at /tmp/pip-req-tracker-2w4ey4pt
2022-04-11T18:03:48,247 Created build tracker: /tmp/pip-req-tracker-2w4ey4pt
2022-04-11T18:03:48,248 Entered build tracker: /tmp/pip-req-tracker-2w4ey4pt
2022-04-11T18:03:48,249 Created temporary directory: /tmp/pip-wheel-__wsb96v
2022-04-11T18:03:48,321 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-11T18:03:48,330 2 location(s) to search for versions of depht:
2022-04-11T18:03:48,330 * https://pypi.org/simple/depht/
2022-04-11T18:03:48,330 * https://www.piwheels.org/simple/depht/
2022-04-11T18:03:48,331 Fetching project page and analyzing links: https://pypi.org/simple/depht/
2022-04-11T18:03:48,332 Getting page https://pypi.org/simple/depht/
2022-04-11T18:03:48,335 Found index url https://pypi.org/simple
2022-04-11T18:03:48,450   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/19/72/fe63d35459233b43e179b3579a137c84b3586a1ec3f6674ce1340fadc2fc/depht-1.0.0-py3-none-any.whl#sha256=a375093b069cfcfc1a0d8cf6e37c3aecbc4b8cd717397b251190bf605d06a0a4 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,452   Found link https://files.pythonhosted.org/packages/91/61/e0c3c1e725b4a281c087467594e908e0a46e1a91ec288ac09b22c4a4ac17/depht-1.0.0.tar.gz#sha256=73eb7bd7d32d52ae5e0bdb62d8ce17cf59d68d633805075a876d6f3cf85da123 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.0
2022-04-11T18:03:48,453   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/3a/8d/e2d2dea7750112dc8b17f17828c6700755e580cfbfadbb6ca1f29cfba3b1/depht-1.0.1-py3-none-any.whl#sha256=93b59e25c7de78b41fa21c3af9a3348c5c69256786790c8b15937b9206cd8e6c (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,455   Found link https://files.pythonhosted.org/packages/39/4b/eda220e1c8d0f7fa2733a9ca9b4918e5ab3e61c8eae17fac32f8719f9e1d/depht-1.0.1.tar.gz#sha256=c623361560ccb615d9ec68467e99bac0e97dca43754d8e86a904ad940e6404a5 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.1
2022-04-11T18:03:48,455   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/32/5e/b4a44d00807cb6ace2704a7bcb063535c0d55fd66876c9f0dfb969311c1f/depht-1.0.2-py3-none-any.whl#sha256=9aab1c0ae369d511c3f89a6a4491a7455ce30950f9406a53be0ffa305e31e6cc (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,457   Found link https://files.pythonhosted.org/packages/d9/e7/1db918963510d931b43704f804783319af47f7c82f5d9a2e53f6936bd67a/depht-1.0.2.tar.gz#sha256=ff8af7ddde50765d86c95835482160c536639f78ea0d6750c5a7bd08e1894654 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.2
2022-04-11T18:03:48,457   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/8b/99/c44ff60e08d7f5708286fb26fc216d2f7ca4ff46fd19b9aa76bbc031a4ac/depht-1.1.1-py3-none-any.whl#sha256=a61b455fc299a29ecb09827e0433e93dcdbd1ca6ad616f0e4df8c456ba29841e (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,459   Found link https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz#sha256=e9636aee4923786ce7c0e086a7a619b32592ba06361a62ead0c00d472c16a948 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.1
2022-04-11T18:03:48,459   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/cc/b2/c5f4eb7fdc8eb091a14a01cba0e3a2a5756757cc34aa7b92289d00df78ad/depht-1.1.2-py3-none-any.whl#sha256=f0fc36a71aca7fb01e8fd0a4e814c7ac36ee4b4e6807a777af7ab14a3503e8c6 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,461   Found link https://files.pythonhosted.org/packages/8d/66/3be8e1fd8a0d732664b4afa5d2cdcaaacfd8074aa933df37ee16bad8cb71/depht-1.1.2.tar.gz#sha256=f8a58e76e363ade42b03b82ede2609eef02c6f4921850faf5f5ac724838a9aaf (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.2
2022-04-11T18:03:48,461   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/60/d5/af28d08aaa5b708043ae39ea37550e1c81812cbc01034feedd74bbcadbfb/depht-1.1.3-py3-none-any.whl#sha256=4f935a96bbee084e22f1d1378b31bf2b605b3dbbd6f8f9dc81dd7d5c628eb173 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,463   Found link https://files.pythonhosted.org/packages/95/40/14650fc8614e79ac3b7d4e2aa431580da9f9524135d130c9d86fe6a2e9ef/depht-1.1.3.tar.gz#sha256=7b691b15f2fbee5fc98cd1494ccdaa3481b7a3300fd7cdff201da59442b92982 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.3
2022-04-11T18:03:48,463 Fetching project page and analyzing links: https://www.piwheels.org/simple/depht/
2022-04-11T18:03:48,464 Getting page https://www.piwheels.org/simple/depht/
2022-04-11T18:03:48,466 Found index url https://www.piwheels.org/simple
2022-04-11T18:03:48,669   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.2-py3-none-any.whl#sha256=3483519a46f25e042f5cf9af6684ffabce759671294bc14174cfa951237458ec (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,670   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.1-py3-none-any.whl#sha256=7a317fc77958224a59cf68ead901529121d9d2b51e9857531a1804cf02652711 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,670   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.2-py3-none-any.whl#sha256=e40087e26a118911beeba973a589afb546a8905bce3927348015d3b5ecb30fc4 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,671   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.1-py3-none-any.whl#sha256=6ce913764fa0fbd66aca333bfaee4b8ba291318ddf7d12eb333ee775bb6399cb (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,671   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.0-py3-none-any.whl#sha256=295b3534c03d4d33691ed03b9aaa1769cce7c3dfd049472609861851d5147697 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-11T18:03:48,672 Skipping link: not a file: https://www.piwheels.org/simple/depht/
2022-04-11T18:03:48,673 Skipping link: not a file: https://pypi.org/simple/depht/
2022-04-11T18:03:48,708 Given no hashes to check 1 links for project 'depht': discarding no candidates
2022-04-11T18:03:48,739 Collecting depht==1.1.3
2022-04-11T18:03:48,743   Created temporary directory: /tmp/pip-unpack-dt8j81uj
2022-04-11T18:03:49,257   Downloading depht-1.1.3.tar.gz (100 kB)
2022-04-11T18:03:49,614   Added depht==1.1.3 from https://files.pythonhosted.org/packages/95/40/14650fc8614e79ac3b7d4e2aa431580da9f9524135d130c9d86fe6a2e9ef/depht-1.1.3.tar.gz#sha256=7b691b15f2fbee5fc98cd1494ccdaa3481b7a3300fd7cdff201da59442b92982 to build tracker '/tmp/pip-req-tracker-2w4ey4pt'
2022-04-11T18:03:49,622   Created temporary directory: /tmp/pip-build-env-0y9ne31s
2022-04-11T18:03:49,636   Created temporary directory: /tmp/pip-standalone-pip-7156b4e1
2022-04-11T18:03:51,843   Installing build dependencies: started
2022-04-11T18:03:51,845   Running command pip subprocess to install build dependencies
2022-04-11T18:04:01,969   Using pip 22.0.4 from /tmp/pip-standalone-pip-7156b4e1/__env_pip__.zip/pip (python 3.7)
2022-04-11T18:04:03,466   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-11T18:04:07,677   Collecting setuptools
2022-04-11T18:04:07,928     Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.1.0-py3-none-any.whl (1.1 MB)
2022-04-11T18:04:08,582   Collecting wheel
2022-04-11T18:04:08,616     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-04-11T18:04:17,986   Installing collected packages: wheel, setuptools
2022-04-11T18:04:18,250     Creating /tmp/pip-build-env-0y9ne31s/overlay/bin
2022-04-11T18:04:18,254     changing mode of /tmp/pip-build-env-0y9ne31s/overlay/bin/wheel to 755
2022-04-11T18:04:22,793   Successfully installed setuptools-62.1.0 wheel-0.37.1
2022-04-11T18:04:23,454   Installing build dependencies: finished with status 'done'
2022-04-11T18:04:23,480   Getting requirements to build wheel: started
2022-04-11T18:04:23,482   Running command Getting requirements to build wheel
2022-04-11T18:04:25,421   running egg_info
2022-04-11T18:04:25,487   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2022-04-11T18:04:25,617   Getting requirements to build wheel: finished with status 'done'
2022-04-11T18:04:25,637   Created temporary directory: /tmp/pip-modern-metadata-d2sf3a4_
2022-04-11T18:04:25,642   Preparing metadata (pyproject.toml): started
2022-04-11T18:04:25,644   Running command Preparing metadata (pyproject.toml)
2022-04-11T18:04:27,456   running dist_info
2022-04-11T18:04:27,484   creating /tmp/pip-modern-metadata-d2sf3a4_/depht.egg-info
2022-04-11T18:04:27,502   writing manifest file '/tmp/pip-modern-metadata-d2sf3a4_/depht.egg-info/SOURCES.txt'
2022-04-11T18:04:27,543   writing manifest file '/tmp/pip-modern-metadata-d2sf3a4_/depht.egg-info/SOURCES.txt'
2022-04-11T18:04:27,853   Preparing metadata (pyproject.toml): finished with status 'done'
2022-04-11T18:04:27,871   Source in /tmp/pip-wheel-__wsb96v/depht_b720178a1d3043998f545cad4367685c has version 1.1.3, which satisfies requirement depht==1.1.3 from https://files.pythonhosted.org/packages/95/40/14650fc8614e79ac3b7d4e2aa431580da9f9524135d130c9d86fe6a2e9ef/depht-1.1.3.tar.gz#sha256=7b691b15f2fbee5fc98cd1494ccdaa3481b7a3300fd7cdff201da59442b92982
2022-04-11T18:04:27,873   Removed depht==1.1.3 from https://files.pythonhosted.org/packages/95/40/14650fc8614e79ac3b7d4e2aa431580da9f9524135d130c9d86fe6a2e9ef/depht-1.1.3.tar.gz#sha256=7b691b15f2fbee5fc98cd1494ccdaa3481b7a3300fd7cdff201da59442b92982 from build tracker '/tmp/pip-req-tracker-2w4ey4pt'
2022-04-11T18:04:27,890 Created temporary directory: /tmp/pip-unpack-ppjfhkct
2022-04-11T18:04:27,891 Building wheels for collected packages: depht
2022-04-11T18:04:27,901   Created temporary directory: /tmp/pip-wheel-h615qz5l
2022-04-11T18:04:27,901   Destination directory: /tmp/pip-wheel-h615qz5l
2022-04-11T18:04:27,906   Building wheel for depht (pyproject.toml): started
2022-04-11T18:04:27,908   Running command Building wheel for depht (pyproject.toml)
2022-04-11T18:04:29,775   running bdist_wheel
2022-04-11T18:04:30,199   running build
2022-04-11T18:04:30,199   running build_py
2022-04-11T18:04:30,207   creating build
2022-04-11T18:04:30,207   creating build/lib
2022-04-11T18:04:30,209   creating build/lib/depht_train
2022-04-11T18:04:30,211   copying src/depht_train/__init__.py -> build/lib/depht_train
2022-04-11T18:04:30,215   copying src/depht_train/run.py -> build/lib/depht_train
2022-04-11T18:04:30,218   copying src/depht_train/__main__.py -> build/lib/depht_train
2022-04-11T18:04:30,221   copying src/depht_train/data.py -> build/lib/depht_train
2022-04-11T18:04:30,226   creating build/lib/depht
2022-04-11T18:04:30,227   copying src/depht/__init__.py -> build/lib/depht
2022-04-11T18:04:30,231   copying src/depht/__main__.py -> build/lib/depht
2022-04-11T18:04:30,236   copying src/depht/data.py -> build/lib/depht
2022-04-11T18:04:30,242   creating build/lib/depht_train/functions
2022-04-11T18:04:30,244   copying src/depht_train/functions/hhsuitedb.py -> build/lib/depht_train/functions
2022-04-11T18:04:30,249   copying src/depht_train/functions/__init__.py -> build/lib/depht_train/functions
2022-04-11T18:04:30,253   copying src/depht_train/functions/clustalo.py -> build/lib/depht_train/functions
2022-04-11T18:04:30,257   copying src/depht_train/functions/train_classifier.py -> build/lib/depht_train/functions
2022-04-11T18:04:30,261   copying src/depht_train/functions/entrez.py -> build/lib/depht_train/functions
2022-04-11T18:04:30,266   copying src/depht_train/functions/fileio.py -> build/lib/depht_train/functions
2022-04-11T18:04:30,270   copying src/depht_train/functions/blastdb.py -> build/lib/depht_train/functions
2022-04-11T18:04:30,275   copying src/depht_train/functions/config_handling.py -> build/lib/depht_train/functions
2022-04-11T18:04:30,280   creating build/lib/depht_train/classes
2022-04-11T18:04:30,282   copying src/depht_train/classes/__init__.py -> build/lib/depht_train/classes
2022-04-11T18:04:30,286   copying src/depht_train/classes/kfold.py -> build/lib/depht_train/classes
2022-04-11T18:04:30,289   copying src/depht_train/classes/database.py -> build/lib/depht_train/classes
2022-04-11T18:04:30,296   creating build/lib/depht_train/pipelines
2022-04-11T18:04:30,298   copying src/depht_train/pipelines/build_HMM_db.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,303   copying src/depht_train/pipelines/__init__.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,306   copying src/depht_train/pipelines/benchmark_output.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,311   copying src/depht_train/pipelines/phamerate.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,315   copying src/depht_train/pipelines/index_sequences.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,319   copying src/depht_train/pipelines/plot_gene_density.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,323   copying src/depht_train/pipelines/screen_conserved_phams.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,327   copying src/depht_train/pipelines/create_model.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,331   copying src/depht_train/pipelines/recut_fasta.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,335   copying src/depht_train/pipelines/build_reference_db.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,338   copying src/depht_train/pipelines/train_model.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,342   copying src/depht_train/pipelines/pull_sequences.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,345   copying src/depht_train/pipelines/curate_gene_clusters.py -> build/lib/depht_train/pipelines
2022-04-11T18:04:30,351   creating build/lib/depht/functions
2022-04-11T18:04:30,353   copying src/depht/functions/att.py -> build/lib/depht/functions
2022-04-11T18:04:30,358   copying src/depht/functions/blastn.py -> build/lib/depht/functions
2022-04-11T18:04:30,361   copying src/depht/functions/statistics.py -> build/lib/depht/functions
2022-04-11T18:04:30,365   copying src/depht/functions/__init__.py -> build/lib/depht/functions
2022-04-11T18:04:30,368   copying src/depht/functions/sniff_format.py -> build/lib/depht/functions
2022-04-11T18:04:30,370   copying src/depht/functions/mmseqs.py -> build/lib/depht/functions
2022-04-11T18:04:30,375   copying src/depht/functions/prophage_prediction.py -> build/lib/depht/functions
2022-04-11T18:04:30,379   copying src/depht/functions/find_homologs.py -> build/lib/depht/functions
2022-04-11T18:04:30,383   copying src/depht/functions/multiprocess.py -> build/lib/depht/functions
2022-04-11T18:04:30,386   copying src/depht/functions/annotation.py -> build/lib/depht/functions
2022-04-11T18:04:30,390   copying src/depht/functions/subprocess.py -> build/lib/depht/functions
2022-04-11T18:04:30,393   copying src/depht/functions/visualization.py -> build/lib/depht/functions
2022-04-11T18:04:30,397   copying src/depht/functions/sliding_window.py -> build/lib/depht/functions
2022-04-11T18:04:30,400   copying src/depht/functions/fasta.py -> build/lib/depht/functions
2022-04-11T18:04:30,405   creating build/lib/depht/classes
2022-04-11T18:04:30,406   copying src/depht/classes/prophage_classifier.py -> build/lib/depht/classes
2022-04-11T18:04:30,411   copying src/depht/classes/progress.py -> build/lib/depht/classes
2022-04-11T18:04:30,414   copying src/depht/classes/__init__.py -> build/lib/depht/classes
2022-04-11T18:04:30,416   copying src/depht/classes/prophage.py -> build/lib/depht/classes
2022-04-11T18:04:30,420   copying src/depht/classes/hhresult.py -> build/lib/depht/classes
2022-04-11T18:04:30,424   copying src/depht/classes/contig.py -> build/lib/depht/classes
2022-04-11T18:04:30,427   copying src/depht/classes/file_translator.py -> build/lib/depht/classes
2022-04-11T18:04:30,457   running install
2022-04-11T18:04:30,518   running install_lib
2022-04-11T18:04:30,526   creating build/bdist.linux-armv7l
2022-04-11T18:04:30,526   creating build/bdist.linux-armv7l/wheel
2022-04-11T18:04:30,530   creating build/bdist.linux-armv7l/wheel/depht_train
2022-04-11T18:04:30,537   creating build/bdist.linux-armv7l/wheel/depht_train/functions
2022-04-11T18:04:30,572   creating build/bdist.linux-armv7l/wheel/depht_train/classes
2022-04-11T18:04:30,585   creating build/bdist.linux-armv7l/wheel/depht_train/pipelines
2022-04-11T18:04:30,645   creating build/bdist.linux-armv7l/wheel/depht
2022-04-11T18:04:30,652   creating build/bdist.linux-armv7l/wheel/depht/functions
2022-04-11T18:04:30,705   creating build/bdist.linux-armv7l/wheel/depht/classes
2022-04-11T18:04:30,743   running install_egg_info
2022-04-11T18:04:30,781   running egg_info
2022-04-11T18:04:30,828   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2022-04-11T18:04:30,831   Copying src/depht.egg-info to build/bdist.linux-armv7l/wheel/depht-1.1.3-py3.7.egg-info
2022-04-11T18:04:30,856   running install_scripts
2022-04-11T18:04:31,473   Building wheel for depht (pyproject.toml): finished with status 'done'
2022-04-11T18:04:31,491   Created wheel for depht: filename=depht-1.1.3-py3-none-any.whl size=111318 sha256=83a6b6a0a5348682ddc18049a490aeef6eb8a9afb32f7bb4d9f283d3d603ad88
2022-04-11T18:04:31,493   Stored in directory: /tmp/pip-ephem-wheel-cache-u591orf2/wheels/78/ef/ca/525256fb9301474c369ab38d663de9d8ca34e2ed487c482f29
2022-04-11T18:04:31,526 Successfully built depht
2022-04-11T18:04:31,543 Removed build tracker: '/tmp/pip-req-tracker-2w4ey4pt'