2022-04-12T13:22:48,091 Created temporary directory: /tmp/pip-ephem-wheel-cache-zmkrb1py 2022-04-12T13:22:48,097 Created temporary directory: /tmp/pip-req-tracker-0_5nxaw2 2022-04-12T13:22:48,098 Initialized build tracking at /tmp/pip-req-tracker-0_5nxaw2 2022-04-12T13:22:48,098 Created build tracker: /tmp/pip-req-tracker-0_5nxaw2 2022-04-12T13:22:48,099 Entered build tracker: /tmp/pip-req-tracker-0_5nxaw2 2022-04-12T13:22:48,100 Created temporary directory: /tmp/pip-wheel-qaefrzdn 2022-04-12T13:22:48,174 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-12T13:22:48,182 2 location(s) to search for versions of seqlike: 2022-04-12T13:22:48,182 * https://pypi.org/simple/seqlike/ 2022-04-12T13:22:48,182 * https://www.piwheels.org/simple/seqlike/ 2022-04-12T13:22:48,184 Fetching project page and analyzing links: https://pypi.org/simple/seqlike/ 2022-04-12T13:22:48,185 Getting page https://pypi.org/simple/seqlike/ 2022-04-12T13:22:48,188 Found index url https://pypi.org/simple 2022-04-12T13:22:48,305 Skipping link: No binaries permitted for seqlike: https://files.pythonhosted.org/packages/a5/c1/120c503e27ffc6eec5bee1148612a50cd4b087d5bff71ea4b2879baa9d03/seqlike-1.1.3-py3-none-any.whl#sha256=8b1cf505ede0c39ca797b09badeb0a8f6ca97b0bf4796cffc4daef9c4ac0b3af (from https://pypi.org/simple/seqlike/) 2022-04-12T13:22:48,306 Found link https://files.pythonhosted.org/packages/89/a5/0d55e59e6b25bc75de5cd711da68fd9a34ffb238c4c486677e2135ba34f4/seqlike-1.1.3.tar.gz#sha256=b3d54533b553ed1b865e9aae67d111f0ac657b588c23cfbec16d5f1ef08b0121 (from https://pypi.org/simple/seqlike/), version: 1.1.3 2022-04-12T13:22:48,307 Skipping link: No binaries permitted for seqlike: https://files.pythonhosted.org/packages/cf/c0/3dea44aa32cd9706b328cacfda3a58cd1aa038ff04b99513341215b76188/seqlike-1.1.4-py3-none-any.whl#sha256=0c8480d13ff41c90c81e5a49871c36d06e8705429cb98e6c3137728bb64f8c99 (from https://pypi.org/simple/seqlike/) 2022-04-12T13:22:48,307 Found link https://files.pythonhosted.org/packages/23/8d/4c3f020b65db348243a9cfc30e5366dd9c8ed8f7fce181e9fe2cc1bdd195/seqlike-1.1.4.tar.gz#sha256=c58631ed565a2df1a2db453507d4aca20c55c74aa7231371d4dcb110cbfbd382 (from https://pypi.org/simple/seqlike/), version: 1.1.4 2022-04-12T13:22:48,308 Skipping link: No binaries permitted for seqlike: https://files.pythonhosted.org/packages/9b/1f/b58479d84b9adf26c28b94fa352fd6e65205fea1e35e4ee9afb5cf0b30d7/seqlike-1.1.5-py3-none-any.whl#sha256=7df23e1a6cf02c2c785dbf15a3255bf4b9319f945bce58ea5d5606b78e77b11f (from https://pypi.org/simple/seqlike/) 2022-04-12T13:22:48,309 Found link https://files.pythonhosted.org/packages/6b/f9/21b860219e57bae7f24531c2eea8475e172f4efbbfb42c89101823f1749f/seqlike-1.1.5.tar.gz#sha256=a968008fe01560729fd0b11bd6ee3cd71e2ea99c13d4caaf2bfdbfb669b52e75 (from https://pypi.org/simple/seqlike/), version: 1.1.5 2022-04-12T13:22:48,309 Skipping link: No binaries permitted for seqlike: https://files.pythonhosted.org/packages/8d/81/0e39f0e19814459fe22243ff6e4d5fa4d810106d2a9e261588623c333afa/seqlike-1.1.6-py3-none-any.whl#sha256=58d3bb03a2f533ced84ea7abcc7a957143b59738b6f46d7f6ed602fecece1920 (from https://pypi.org/simple/seqlike/) 2022-04-12T13:22:48,310 Found link https://files.pythonhosted.org/packages/1a/ba/005ca76953422c73113b8cb7aaeace63479429ce1e5353ead19663cc7dd6/seqlike-1.1.6.tar.gz#sha256=9bf9f9af1b6ffef2d322b285424f4b89c6622aef1ccd9b88def4dac45d8107b8 (from https://pypi.org/simple/seqlike/), version: 1.1.6 2022-04-12T13:22:48,310 Skipping link: No binaries permitted for seqlike: https://files.pythonhosted.org/packages/a4/a2/4487cdb0650a9146cb966657e8ad23945f01f0c53000766e893f816ca476/seqlike-1.1.7-py3-none-any.whl#sha256=54b95d1ffc9bc7a2c2ae9c155d9588caae115c01828319a131ccf7ff4f904ee6 (from https://pypi.org/simple/seqlike/) 2022-04-12T13:22:48,311 Found link https://files.pythonhosted.org/packages/37/80/a43b6891e4c3181e61b9e5ea6078d52f1f7f9c45c34a02d11998f9dba762/seqlike-1.1.7.tar.gz#sha256=7865cf6823a572145034f8f069bf4d68e39bfe0ab3313979f3b76e8b0b7a32cb (from https://pypi.org/simple/seqlike/), version: 1.1.7 2022-04-12T13:22:48,312 Skipping link: No binaries permitted for seqlike: https://files.pythonhosted.org/packages/b6/70/65b5941a42f587e45c31fe85814a2ab9d8485b555e99ea07e1ec3fa5a48d/seqlike-1.1.8-py3-none-any.whl#sha256=b3043e3d3c8a5fd2da526e1eb3efd7b29bf58d787eb5e1c29a62ae3b0e120a78 (from https://pypi.org/simple/seqlike/) 2022-04-12T13:22:48,312 Found link https://files.pythonhosted.org/packages/f8/43/edac70226ee6d22b4b65e3ff02cf324aa84256df05b2b365f0586b3806ed/seqlike-1.1.8.tar.gz#sha256=8ffef4c547d8803b6ebf69fd0669773c1e08b1e010015a1196619addcbca25dc (from https://pypi.org/simple/seqlike/), version: 1.1.8 2022-04-12T13:22:48,313 Skipping link: No binaries permitted for seqlike: https://files.pythonhosted.org/packages/f3/67/03103c9fd18e59229498d69d3de3c2a50074deca20fb45d9b652824da33e/seqlike-1.1.9-py3-none-any.whl#sha256=c449781023b46560a12140855c293c9b7dc487b34360913dd114d164780312c6 (from https://pypi.org/simple/seqlike/) 2022-04-12T13:22:48,314 Found link https://files.pythonhosted.org/packages/f9/31/a29d0e889cdaafe76063738aa771d27409770e329a7d6ec53473aa1ffa26/seqlike-1.1.9.tar.gz#sha256=f385a3b6bc447c771bc51bc26275fa20ba1c2c62c49cda2a87a9f8ef183f726f (from https://pypi.org/simple/seqlike/), version: 1.1.9 2022-04-12T13:22:48,315 Fetching project page and analyzing links: https://www.piwheels.org/simple/seqlike/ 2022-04-12T13:22:48,315 Getting page https://www.piwheels.org/simple/seqlike/ 2022-04-12T13:22:48,317 Found index url https://www.piwheels.org/simple 2022-04-12T13:22:48,539 Skipping link: No binaries permitted for seqlike: https://www.piwheels.org/simple/seqlike/seqlike-1.1.8-py3-none-any.whl#sha256=d997e55be4bbeb5f1c3ff8683ea5e952bca0af02824a7f19410836e56965ee5e (from https://www.piwheels.org/simple/seqlike/) 2022-04-12T13:22:48,540 Skipping link: No binaries permitted for seqlike: https://www.piwheels.org/simple/seqlike/seqlike-1.1.7-py3-none-any.whl#sha256=8a6e5cf85b18606e2e272fa5feb22258daea065773969d19b60b525c571d44df (from https://www.piwheels.org/simple/seqlike/) 2022-04-12T13:22:48,540 Skipping link: No binaries permitted for seqlike: https://www.piwheels.org/simple/seqlike/seqlike-1.1.6-py3-none-any.whl#sha256=23a83b7da617f72b1f36bee560b1a2a5bb6ea97ecf7b0fb861046d1057729776 (from https://www.piwheels.org/simple/seqlike/) 2022-04-12T13:22:48,541 Skipping link: No binaries permitted for seqlike: https://www.piwheels.org/simple/seqlike/seqlike-1.1.5-py3-none-any.whl#sha256=62891a7276fd36e4fbbca1ecad13214cbd713aaed04474b4ffbdd8795babf7eb (from https://www.piwheels.org/simple/seqlike/) 2022-04-12T13:22:48,541 Skipping link: No binaries permitted for seqlike: https://www.piwheels.org/simple/seqlike/seqlike-1.1.4-py3-none-any.whl#sha256=25c2eccfac2eb7dc0e894f567e53972908020072696161783ef1bb2637c39805 (from https://www.piwheels.org/simple/seqlike/) 2022-04-12T13:22:48,542 Skipping link: No binaries permitted for seqlike: https://www.piwheels.org/simple/seqlike/seqlike-1.1.3-py3-none-any.whl#sha256=48892b2a5e159477c4be823cb36f08d9119f0e6bc622c78db8574c8e1d071843 (from https://www.piwheels.org/simple/seqlike/) 2022-04-12T13:22:48,542 Skipping link: not a file: https://www.piwheels.org/simple/seqlike/ 2022-04-12T13:22:48,543 Skipping link: not a file: https://pypi.org/simple/seqlike/ 2022-04-12T13:22:48,579 Given no hashes to check 1 links for project 'seqlike': discarding no candidates 2022-04-12T13:22:48,610 Collecting seqlike==1.1.9 2022-04-12T13:22:48,614 Created temporary directory: /tmp/pip-unpack-h20cmwhi 2022-04-12T13:22:48,704 Downloading seqlike-1.1.9.tar.gz (366 kB) 2022-04-12T13:22:49,112 Added seqlike==1.1.9 from https://files.pythonhosted.org/packages/f9/31/a29d0e889cdaafe76063738aa771d27409770e329a7d6ec53473aa1ffa26/seqlike-1.1.9.tar.gz#sha256=f385a3b6bc447c771bc51bc26275fa20ba1c2c62c49cda2a87a9f8ef183f726f to build tracker '/tmp/pip-req-tracker-0_5nxaw2' 2022-04-12T13:22:49,124 Created temporary directory: /tmp/pip-build-env-yaegtotr 2022-04-12T13:22:49,139 Created temporary directory: /tmp/pip-standalone-pip-lfjapcwt 2022-04-12T13:22:51,362 Installing build dependencies: started 2022-04-12T13:22:51,365 Running command pip subprocess to install build dependencies 2022-04-12T13:23:01,601 Using pip 22.0.4 from /tmp/pip-standalone-pip-lfjapcwt/__env_pip__.zip/pip (python 3.7) 2022-04-12T13:23:03,107 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-12T13:23:07,125 Collecting setuptools>=40.6.0 2022-04-12T13:23:07,389 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.1.0-py3-none-any.whl (1.1 MB) 2022-04-12T13:23:08,051 Collecting wheel 2022-04-12T13:23:08,083 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-04-12T13:23:08,852 Collecting requests 2022-04-12T13:23:08,888 Using cached https://www.piwheels.org/simple/requests/requests-2.27.1-py2.py3-none-any.whl (63 kB) 2022-04-12T13:23:09,291 Collecting idna<4,>=2.5 2022-04-12T13:23:09,333 Using cached https://www.piwheels.org/simple/idna/idna-3.3-py3-none-any.whl (64 kB) 2022-04-12T13:23:09,733 Collecting charset-normalizer~=2.0.0 2022-04-12T13:23:09,769 Using cached https://www.piwheels.org/simple/charset-normalizer/charset_normalizer-2.0.12-py3-none-any.whl (44 kB) 2022-04-12T13:23:10,435 Collecting urllib3<1.27,>=1.21.1 2022-04-12T13:23:10,488 Using cached https://www.piwheels.org/simple/urllib3/urllib3-1.26.9-py2.py3-none-any.whl (155 kB) 2022-04-12T13:23:10,913 Collecting certifi>=2017.4.17 2022-04-12T13:23:10,965 Using cached https://www.piwheels.org/simple/certifi/certifi-2021.10.8-py2.py3-none-any.whl (151 kB) 2022-04-12T13:23:20,935 Installing collected packages: certifi, wheel, urllib3, setuptools, idna, charset-normalizer, requests 2022-04-12T13:23:21,297 Creating /tmp/pip-build-env-yaegtotr/overlay/bin 2022-04-12T13:23:21,302 changing mode of /tmp/pip-build-env-yaegtotr/overlay/bin/wheel to 755 2022-04-12T13:23:27,433 changing mode of /tmp/pip-build-env-yaegtotr/overlay/bin/normalizer to 755 2022-04-12T13:23:27,805 Successfully installed certifi-2021.10.8 charset-normalizer-2.0.12 idna-3.3 requests-2.27.1 setuptools-62.1.0 urllib3-1.26.9 wheel-0.37.1 2022-04-12T13:23:28,517 Installing build dependencies: finished with status 'done' 2022-04-12T13:23:28,543 Getting requirements to build wheel: started 2022-04-12T13:23:28,546 Running command Getting requirements to build wheel 2022-04-12T13:23:30,872 running egg_info 2022-04-12T13:23:30,924 writing manifest file 'seqlike.egg-info/SOURCES.txt' 2022-04-12T13:23:31,089 Getting requirements to build wheel: finished with status 'done' 2022-04-12T13:23:31,115 Created temporary directory: /tmp/pip-modern-metadata-stj9kvz2 2022-04-12T13:23:31,121 Preparing metadata (pyproject.toml): started 2022-04-12T13:23:31,123 Running command Preparing metadata (pyproject.toml) 2022-04-12T13:23:33,326 running dist_info 2022-04-12T13:23:33,353 creating /tmp/pip-modern-metadata-stj9kvz2/seqlike.egg-info 2022-04-12T13:23:33,367 writing manifest file '/tmp/pip-modern-metadata-stj9kvz2/seqlike.egg-info/SOURCES.txt' 2022-04-12T13:23:33,399 writing manifest file '/tmp/pip-modern-metadata-stj9kvz2/seqlike.egg-info/SOURCES.txt' 2022-04-12T13:23:33,706 Preparing metadata (pyproject.toml): finished with status 'done' 2022-04-12T13:23:33,721 Source in /tmp/pip-wheel-qaefrzdn/seqlike_d54f0fb981494e7dbf97a5592f35d37b has version 1.1.9, which satisfies requirement seqlike==1.1.9 from https://files.pythonhosted.org/packages/f9/31/a29d0e889cdaafe76063738aa771d27409770e329a7d6ec53473aa1ffa26/seqlike-1.1.9.tar.gz#sha256=f385a3b6bc447c771bc51bc26275fa20ba1c2c62c49cda2a87a9f8ef183f726f 2022-04-12T13:23:33,723 Removed seqlike==1.1.9 from https://files.pythonhosted.org/packages/f9/31/a29d0e889cdaafe76063738aa771d27409770e329a7d6ec53473aa1ffa26/seqlike-1.1.9.tar.gz#sha256=f385a3b6bc447c771bc51bc26275fa20ba1c2c62c49cda2a87a9f8ef183f726f from build tracker '/tmp/pip-req-tracker-0_5nxaw2' 2022-04-12T13:23:33,734 Created temporary directory: /tmp/pip-unpack-c44xzz6w 2022-04-12T13:23:33,735 Building wheels for collected packages: seqlike 2022-04-12T13:23:33,744 Created temporary directory: /tmp/pip-wheel-d_zer5wp 2022-04-12T13:23:33,745 Destination directory: /tmp/pip-wheel-d_zer5wp 2022-04-12T13:23:33,750 Building wheel for seqlike (pyproject.toml): started 2022-04-12T13:23:33,752 Running command Building wheel for seqlike (pyproject.toml) 2022-04-12T13:23:36,054 running bdist_wheel 2022-04-12T13:23:36,562 running build 2022-04-12T13:23:36,562 running build_py 2022-04-12T13:23:36,570 creating build 2022-04-12T13:23:36,571 creating build/lib 2022-04-12T13:23:36,572 creating build/lib/seqlike 2022-04-12T13:23:36,574 copying seqlike/__init__.py -> build/lib/seqlike 2022-04-12T13:23:36,578 copying seqlike/draw_utils.py -> build/lib/seqlike 2022-04-12T13:23:36,583 copying seqlike/alphabets.py -> build/lib/seqlike 2022-04-12T13:23:36,587 copying seqlike/alignment_commands.py -> build/lib/seqlike 2022-04-12T13:23:36,592 copying seqlike/encoders.py -> build/lib/seqlike 2022-04-12T13:23:36,596 copying seqlike/SeqLikeAccessor.py -> build/lib/seqlike 2022-04-12T13:23:36,602 copying seqlike/codon_tables.py -> build/lib/seqlike 2022-04-12T13:23:36,606 copying seqlike/SeqLike.py -> build/lib/seqlike 2022-04-12T13:23:36,613 copying seqlike/version.py -> build/lib/seqlike 2022-04-12T13:23:36,616 copying seqlike/AlignCommandline.py -> build/lib/seqlike 2022-04-12T13:23:36,623 copying seqlike/alignment_utils.py -> build/lib/seqlike 2022-04-12T13:23:36,628 creating build/lib/tests 2022-04-12T13:23:36,630 copying tests/test_aaSeqLike_ntSeqLike.py -> build/lib/tests 2022-04-12T13:23:36,634 copying tests/__init__.py -> build/lib/tests 2022-04-12T13:23:36,638 copying tests/test_assets.py -> build/lib/tests 2022-04-12T13:23:36,642 copying tests/test_SeqLikeAccessor.py -> build/lib/tests 2022-04-12T13:23:36,647 copying tests/test_SeqLike_alignment.py -> build/lib/tests 2022-04-12T13:23:36,652 copying tests/test_SeqLike_conversion_to_numerical.py -> build/lib/tests 2022-04-12T13:23:36,656 copying tests/test_SeqLike.py -> build/lib/tests 2022-04-12T13:23:36,660 copying tests/test_SeqLike_magic_methods.py -> build/lib/tests 2022-04-12T13:23:36,664 copying tests/test_identify_alphabet.py -> build/lib/tests 2022-04-12T13:23:36,667 copying tests/test_draw_utils.py -> build/lib/tests 2022-04-12T13:23:36,670 copying tests/test_SeqLike_to_other_seq_formats.py -> build/lib/tests 2022-04-12T13:23:36,674 copying tests/test_encoders.py -> build/lib/tests 2022-04-12T13:23:36,679 creating build/lib/seqlike/utils 2022-04-12T13:23:36,680 copying seqlike/utils/constructor.py -> build/lib/seqlike/utils 2022-04-12T13:23:36,683 copying seqlike/utils/__init__.py -> build/lib/seqlike/utils 2022-04-12T13:23:36,687 copying seqlike/utils/validation.py -> build/lib/seqlike/utils 2022-04-12T13:23:36,690 copying seqlike/utils/sequences.py -> build/lib/seqlike/utils 2022-04-12T13:23:36,696 copying seqlike/FreeMono.ttf -> build/lib/seqlike 2022-04-12T13:23:36,748 running install 2022-04-12T13:23:36,813 running install_lib 2022-04-12T13:23:36,820 creating build/bdist.linux-armv7l 2022-04-12T13:23:36,821 creating build/bdist.linux-armv7l/wheel 2022-04-12T13:23:36,824 creating build/bdist.linux-armv7l/wheel/seqlike 2022-04-12T13:23:36,873 creating build/bdist.linux-armv7l/wheel/seqlike/utils 2022-04-12T13:23:36,920 creating build/bdist.linux-armv7l/wheel/tests 2022-04-12T13:23:36,963 running install_egg_info 2022-04-12T13:23:37,006 running egg_info 2022-04-12T13:23:37,043 writing manifest file 'seqlike.egg-info/SOURCES.txt' 2022-04-12T13:23:37,046 Copying seqlike.egg-info to build/bdist.linux-armv7l/wheel/seqlike-1.1.9-py3.7.egg-info 2022-04-12T13:23:37,065 running install_scripts 2022-04-12T13:23:37,175 /usr/bin/apt-get 2022-04-12T13:23:37,583 Reading package lists... 2022-04-12T13:23:37,591 E: Could not open lock file /var/lib/apt/lists/lock - open (13: Permission denied) 2022-04-12T13:23:37,592 E: Unable to lock directory /var/lib/apt/lists/ 2022-04-12T13:23:37,593 W: Problem unlinking the file /var/cache/apt/pkgcache.bin - RemoveCaches (13: Permission denied) 2022-04-12T13:23:37,593 W: Problem unlinking the file /var/cache/apt/srcpkgcache.bin - RemoveCaches (13: Permission denied) 2022-04-12T13:23:38,115 setup.py:82: UserWarning: Installation by dpkg and brew failed. Please manually install MAFFT to enjoy SeqLike's Series Accessor's method-chained alignment capabilities. 2022-04-12T13:23:38,116 MAFFT installation instructions can be found on https://mafft.cbrc.jp/alignment/software/. 2022-04-12T13:23:38,116 "Installation by dpkg and brew failed. " 2022-04-12T13:23:38,116 Debian-based installation failed. Trying with brew instead... 2022-04-12T13:23:38,336 Building wheel for seqlike (pyproject.toml): finished with status 'done' 2022-04-12T13:23:38,369 Created wheel for seqlike: filename=seqlike-1.1.9-py3-none-any.whl size=367999 sha256=8c35b51c9c7a15a495465ae04471e15aea362c15857e0fc89074c222f82611e4 2022-04-12T13:23:38,371 Stored in directory: /tmp/pip-ephem-wheel-cache-zmkrb1py/wheels/13/e3/24/8af45c267687482de8a20254e1f79cefaf72978cb1f72e73a3 2022-04-12T13:23:38,397 Successfully built seqlike 2022-04-12T13:23:38,433 Removed build tracker: '/tmp/pip-req-tracker-0_5nxaw2'