2022-04-13T11:44:46,905 Created temporary directory: /tmp/pip-ephem-wheel-cache-11qnv34c 2022-04-13T11:44:46,910 Created temporary directory: /tmp/pip-req-tracker-0r2a_z68 2022-04-13T11:44:46,911 Initialized build tracking at /tmp/pip-req-tracker-0r2a_z68 2022-04-13T11:44:46,911 Created build tracker: /tmp/pip-req-tracker-0r2a_z68 2022-04-13T11:44:46,912 Entered build tracker: /tmp/pip-req-tracker-0r2a_z68 2022-04-13T11:44:46,913 Created temporary directory: /tmp/pip-wheel-fktrdz61 2022-04-13T11:44:46,980 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-13T11:44:46,989 2 location(s) to search for versions of superpang: 2022-04-13T11:44:46,989 * https://pypi.org/simple/superpang/ 2022-04-13T11:44:46,989 * https://www.piwheels.org/simple/superpang/ 2022-04-13T11:44:46,990 Fetching project page and analyzing links: https://pypi.org/simple/superpang/ 2022-04-13T11:44:46,991 Getting page https://pypi.org/simple/superpang/ 2022-04-13T11:44:46,994 Found index url https://pypi.org/simple 2022-04-13T11:44:47,110 Found link https://files.pythonhosted.org/packages/9c/57/83a3974eb6f1728623e29d7fc3c5f3ccb0702c44d756e2b1f6f1b92798e1/SuperPang-0.7.0.post1.tar.gz#sha256=66dc5c719116910f583d0ff2232e7d726e1d7ec87ddc3eb0c2b96223d557fa76 (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.7.0.post1 2022-04-13T11:44:47,112 Found link https://files.pythonhosted.org/packages/e8/23/ca26f8c2506d465d8b8383c1b8b60d052a2f86b58de691502e328dc925b0/SuperPang-0.8.0.tar.gz#sha256=43008682242c2d1620b6bd917f4efc5b482dfd0a28bcfe9495dc1801b06c8ef4 (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.8.0 2022-04-13T11:44:47,113 Found link https://files.pythonhosted.org/packages/4a/4f/ece0df30b902a9e6ff8d63632251d4c67ecd909cd7bde08a142d56a24880/SuperPang-0.8.1.tar.gz#sha256=28c713b15a3bd3fb2dd7548a815acb91168dca2e765a5a213cc7c13ef85b5d3d (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.8.1 2022-04-13T11:44:47,114 Found link https://files.pythonhosted.org/packages/fc/fb/e92ac7479a7f8edb9864ece82b66104ad145015cc3abc02a4a37c60c4e32/SuperPang-0.9.0.tar.gz#sha256=d7919000bd511bfdcc435b08dcd23c9c4e1ed93cdfa96a5f1a60cc153e4678b5 (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.0 2022-04-13T11:44:47,116 Found link https://files.pythonhosted.org/packages/fa/30/f59e38f3c4cde22e00716f8478fbcbe73d4e0b7c4ac11bf7354f4682794f/SuperPang-0.9.1.tar.gz#sha256=789ce94a2eac77116068b5295b9c05fd12fd9487ead11793a3bd1df6a5fe2c24 (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.1 2022-04-13T11:44:47,117 Found link https://files.pythonhosted.org/packages/7d/52/14b5e6e30655f1a4aa2fc6f1d66126075c5b8e9a204344f34ddf7f15300a/SuperPang-0.9.3.post1.tar.gz#sha256=d0e2dbf039f50e7851dc76c00586d5625b401ec5622b5233c381488a0c157100 (from https://pypi.org/simple/superpang/) (requires-python:>=3.8), version: 0.9.3.post1 2022-04-13T11:44:47,118 Fetching project page and analyzing links: https://www.piwheels.org/simple/superpang/ 2022-04-13T11:44:47,118 Getting page https://www.piwheels.org/simple/superpang/ 2022-04-13T11:44:47,120 Found index url https://www.piwheels.org/simple 2022-04-13T11:44:47,320 Skipping link: No binaries permitted for superpang: https://www.piwheels.org/simple/superpang/SuperPang-0.7.0.post1-py3-none-any.whl#sha256=7b5427f75343e311a397b472cfed232b2549783866aa715ac6cee45857734501 (from https://www.piwheels.org/simple/superpang/) (requires-python:>=3.8) 2022-04-13T11:44:47,321 Skipping link: not a file: https://www.piwheels.org/simple/superpang/ 2022-04-13T11:44:47,321 Skipping link: not a file: https://pypi.org/simple/superpang/ 2022-04-13T11:44:47,367 Given no hashes to check 1 links for project 'superpang': discarding no candidates 2022-04-13T11:44:47,408 Collecting superpang==0.9.3.post1 2022-04-13T11:44:47,413 Created temporary directory: /tmp/pip-unpack-skabweq6 2022-04-13T11:44:48,453 Downloading SuperPang-0.9.3.post1.tar.gz (6.3 MB) 2022-04-13T11:44:52,010 Added superpang==0.9.3.post1 from https://files.pythonhosted.org/packages/7d/52/14b5e6e30655f1a4aa2fc6f1d66126075c5b8e9a204344f34ddf7f15300a/SuperPang-0.9.3.post1.tar.gz#sha256=d0e2dbf039f50e7851dc76c00586d5625b401ec5622b5233c381488a0c157100 to build tracker '/tmp/pip-req-tracker-0r2a_z68' 2022-04-13T11:44:52,012 Running setup.py (path:/tmp/pip-wheel-fktrdz61/superpang_c4729a026ab44676aeb819ccb249eefa/setup.py) egg_info for package superpang 2022-04-13T11:44:52,013 Created temporary directory: /tmp/pip-pip-egg-info-463r6n2q 2022-04-13T11:44:52,014 Preparing metadata (setup.py): started 2022-04-13T11:44:52,016 Running command python setup.py egg_info 2022-04-13T11:44:53,888 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing '0.9.3post1' to '0.9.3.post1' 2022-04-13T11:44:53,890 warnings.warn(tmpl.format(**locals())) 2022-04-13T11:44:53,926 running egg_info 2022-04-13T11:44:53,931 creating /tmp/pip-pip-egg-info-463r6n2q/SuperPang.egg-info 2022-04-13T11:44:53,945 writing manifest file '/tmp/pip-pip-egg-info-463r6n2q/SuperPang.egg-info/SOURCES.txt' 2022-04-13T11:44:54,394 writing manifest file '/tmp/pip-pip-egg-info-463r6n2q/SuperPang.egg-info/SOURCES.txt' 2022-04-13T11:44:54,530 Preparing metadata (setup.py): finished with status 'done' 2022-04-13T11:44:54,541 Source in /tmp/pip-wheel-fktrdz61/superpang_c4729a026ab44676aeb819ccb249eefa has version 0.9.3.post1, which satisfies requirement superpang==0.9.3.post1 from https://files.pythonhosted.org/packages/7d/52/14b5e6e30655f1a4aa2fc6f1d66126075c5b8e9a204344f34ddf7f15300a/SuperPang-0.9.3.post1.tar.gz#sha256=d0e2dbf039f50e7851dc76c00586d5625b401ec5622b5233c381488a0c157100 2022-04-13T11:44:54,543 Removed superpang==0.9.3.post1 from https://files.pythonhosted.org/packages/7d/52/14b5e6e30655f1a4aa2fc6f1d66126075c5b8e9a204344f34ddf7f15300a/SuperPang-0.9.3.post1.tar.gz#sha256=d0e2dbf039f50e7851dc76c00586d5625b401ec5622b5233c381488a0c157100 from build tracker '/tmp/pip-req-tracker-0r2a_z68' 2022-04-13T11:44:54,556 Created temporary directory: /tmp/pip-unpack-7zbcnumu 2022-04-13T11:44:54,557 Building wheels for collected packages: superpang 2022-04-13T11:44:54,566 Created temporary directory: /tmp/pip-wheel-r5xz7fe2 2022-04-13T11:44:54,567 Building wheel for superpang (setup.py): started 2022-04-13T11:44:54,569 Destination directory: /tmp/pip-wheel-r5xz7fe2 2022-04-13T11:44:54,569 Running command python setup.py bdist_wheel 2022-04-13T11:44:56,414 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing '0.9.3post1' to '0.9.3.post1' 2022-04-13T11:44:56,416 warnings.warn(tmpl.format(**locals())) 2022-04-13T11:44:56,511 running bdist_wheel 2022-04-13T11:44:56,894 running build 2022-04-13T11:44:56,895 running build_py 2022-04-13T11:44:56,902 creating build 2022-04-13T11:44:56,903 creating build/lib.linux-armv7l-3.9 2022-04-13T11:44:56,904 creating build/lib.linux-armv7l-3.9/SuperPang 2022-04-13T11:44:56,906 copying SuperPang/__init__.py -> build/lib.linux-armv7l-3.9/SuperPang 2022-04-13T11:44:56,911 creating build/lib.linux-armv7l-3.9/SuperPang/lib 2022-04-13T11:44:56,912 copying SuperPang/lib/utils.py -> build/lib.linux-armv7l-3.9/SuperPang/lib 2022-04-13T11:44:56,916 copying SuperPang/lib/__init__.py -> build/lib.linux-armv7l-3.9/SuperPang/lib 2022-04-13T11:44:56,918 copying SuperPang/lib/Assembler.py -> build/lib.linux-armv7l-3.9/SuperPang/lib 2022-04-13T11:44:56,924 running egg_info 2022-04-13T11:44:56,978 writing manifest file 'SuperPang.egg-info/SOURCES.txt' 2022-04-13T11:44:56,985 copying SuperPang/VERSION -> build/lib.linux-armv7l-3.9/SuperPang 2022-04-13T11:44:56,988 creating build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-04-13T11:44:56,990 copying SuperPang/scripts/SuperPang.py -> build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-04-13T11:44:56,995 copying SuperPang/scripts/condense-edges.py -> build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-04-13T11:44:57,000 copying SuperPang/scripts/homogenize.py -> build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-04-13T11:44:57,006 copying SuperPang/scripts/test-SuperPang.py -> build/lib.linux-armv7l-3.9/SuperPang/scripts 2022-04-13T11:44:57,009 creating build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,011 copying SuperPang/test_data/2636415981.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,134 copying SuperPang/test_data/2636416036.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,254 copying SuperPang/test_data/2636416061.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,342 copying SuperPang/test_data/2636416062.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,449 copying SuperPang/test_data/2639762512.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,566 copying SuperPang/test_data/2639762514.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,660 copying SuperPang/test_data/2639762515.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,784 copying SuperPang/test_data/2639762516.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:57,897 copying SuperPang/test_data/2844342787.fna -> build/lib.linux-armv7l-3.9/SuperPang/test_data 2022-04-13T11:44:58,014 copying SuperPang/lib/Compressor.c -> build/lib.linux-armv7l-3.9/SuperPang/lib 2022-04-13T11:44:58,066 running build_ext 2022-04-13T11:44:58,077 creating build/temp.linux-armv7l-3.9 2022-04-13T11:44:58,078 creating build/temp.linux-armv7l-3.9/SuperPang 2022-04-13T11:44:58,078 creating build/temp.linux-armv7l-3.9/SuperPang/lib 2022-04-13T11:44:58,080 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c SuperPang/lib/Compressor.c -o build/temp.linux-armv7l-3.9/SuperPang/lib/Compressor.o 2022-04-13T11:44:58,827 SuperPang/lib/Compressor.c:633:10: fatal error: numpy/arrayobject.h: No such file or directory 2022-04-13T11:44:58,828 633 | #include "numpy/arrayobject.h" 2022-04-13T11:44:58,828 | ^~~~~~~~~~~~~~~~~~~~~ 2022-04-13T11:44:58,829 compilation terminated. 2022-04-13T11:44:58,840 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-04-13T11:44:59,005 ERROR: [present-diagnostic] python setup.py bdist_wheel exited with 1 2022-04-13T11:44:59,044 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2022-04-13T11:44:59,044 exec(compile('"'"''"'"''"'"' 2022-04-13T11:44:59,044 # This is -- a caller that pip uses to run setup.py 2022-04-13T11:44:59,044 # 2022-04-13T11:44:59,044 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-04-13T11:44:59,044 # import from `distutils.core` to work with newer packaging standards. 2022-04-13T11:44:59,044 # - It provides a clear error message when setuptools is not installed. 2022-04-13T11:44:59,044 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-04-13T11:44:59,044 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-04-13T11:44:59,044 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-04-13T11:44:59,044 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-04-13T11:44:59,044 import os, sys, tokenize 2022-04-13T11:44:59,044 2022-04-13T11:44:59,044 try: 2022-04-13T11:44:59,044 import setuptools 2022-04-13T11:44:59,044 except ImportError as error: 2022-04-13T11:44:59,044 print( 2022-04-13T11:44:59,044 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-04-13T11:44:59,044 "the build environment.", 2022-04-13T11:44:59,044 file=sys.stderr, 2022-04-13T11:44:59,044 ) 2022-04-13T11:44:59,044 sys.exit(1) 2022-04-13T11:44:59,044 2022-04-13T11:44:59,044 __file__ = %r 2022-04-13T11:44:59,044 sys.argv[0] = __file__ 2022-04-13T11:44:59,044 2022-04-13T11:44:59,044 if os.path.exists(__file__): 2022-04-13T11:44:59,044 filename = __file__ 2022-04-13T11:44:59,044 with tokenize.open(__file__) as f: 2022-04-13T11:44:59,044 setup_py_code = f.read() 2022-04-13T11:44:59,044 else: 2022-04-13T11:44:59,044 filename = "" 2022-04-13T11:44:59,044 setup_py_code = "from setuptools import setup; setup()" 2022-04-13T11:44:59,044 2022-04-13T11:44:59,044 exec(compile(setup_py_code, filename, "exec")) 2022-04-13T11:44:59,044 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-fktrdz61/superpang_c4729a026ab44676aeb819ccb249eefa/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-r5xz7fe2[/] 2022-04-13T11:44:59,044 [bold magenta]cwd[/]: /tmp/pip-wheel-fktrdz61/superpang_c4729a026ab44676aeb819ccb249eefa/ 2022-04-13T11:44:59,045 Building wheel for superpang (setup.py): finished with status 'error' 2022-04-13T11:44:59,047 ERROR: Failed building wheel for superpang 2022-04-13T11:44:59,049 Running setup.py clean for superpang 2022-04-13T11:44:59,051 Running command python setup.py clean 2022-04-13T11:45:00,888 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing '0.9.3post1' to '0.9.3.post1' 2022-04-13T11:45:00,889 warnings.warn(tmpl.format(**locals())) 2022-04-13T11:45:00,915 running clean 2022-04-13T11:45:00,919 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2022-04-13T11:45:00,923 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2022-04-13T11:45:00,958 'build/bdist.linux-armv7l' does not exist -- can't clean it 2022-04-13T11:45:00,958 'build/scripts-3.9' does not exist -- can't clean it 2022-04-13T11:45:01,080 Failed to build superpang 2022-04-13T11:45:01,083 ERROR: Failed to build one or more wheels 2022-04-13T11:45:01,086 Exception information: 2022-04-13T11:45:01,086 Traceback (most recent call last): 2022-04-13T11:45:01,086 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper 2022-04-13T11:45:01,086 status = run_func(*args) 2022-04-13T11:45:01,086 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2022-04-13T11:45:01,086 return func(self, options, args) 2022-04-13T11:45:01,086 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 176, in run 2022-04-13T11:45:01,086 raise CommandError("Failed to build one or more wheels") 2022-04-13T11:45:01,086 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-04-13T11:45:01,092 Removed build tracker: '/tmp/pip-req-tracker-0r2a_z68'