2022-04-14T03:05:48,490 Created temporary directory: /tmp/pip-ephem-wheel-cache-hf4wtpvn 2022-04-14T03:05:48,496 Created temporary directory: /tmp/pip-req-tracker-47u9x3c9 2022-04-14T03:05:48,497 Initialized build tracking at /tmp/pip-req-tracker-47u9x3c9 2022-04-14T03:05:48,497 Created build tracker: /tmp/pip-req-tracker-47u9x3c9 2022-04-14T03:05:48,497 Entered build tracker: /tmp/pip-req-tracker-47u9x3c9 2022-04-14T03:05:48,499 Created temporary directory: /tmp/pip-wheel-1lfjymhn 2022-04-14T03:05:48,567 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-14T03:05:48,575 2 location(s) to search for versions of cdot: 2022-04-14T03:05:48,575 * https://pypi.org/simple/cdot/ 2022-04-14T03:05:48,575 * https://www.piwheels.org/simple/cdot/ 2022-04-14T03:05:48,576 Fetching project page and analyzing links: https://pypi.org/simple/cdot/ 2022-04-14T03:05:48,577 Getting page https://pypi.org/simple/cdot/ 2022-04-14T03:05:48,581 Found index url https://pypi.org/simple 2022-04-14T03:05:48,699 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/3d/22/214ad62937068f36bf8cafa3bba79d1c7eb161a3dcc7580e4338b63fc544/cdot-0.1.1-py3-none-any.whl#sha256=42432acf179300c78b9e959ce4dc222656e09b73efe41559903774061352c786 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,701 Found link https://files.pythonhosted.org/packages/13/d4/dc0da1d4851fc43dedc758568a35a82e1ce4965786b5037939d62a4ef1de/cdot-0.1.1.tar.gz#sha256=84f858c4c95d7dc979df810e75ed8c794be418fb5fddbac937dc0cc2cfa0d5eb (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.1.1 2022-04-14T03:05:48,702 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/d6/cb/4a25bf6c788c392e69f7a0b8ebfb5740f520ea8cf1f5af9e0d9e26d12385/cdot-0.2.1-py3-none-any.whl#sha256=d2aab58418a194f2be5bceeafa9ac262bd38fd103e4716ad9987cad2f2fca63f (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,703 Found link https://files.pythonhosted.org/packages/ef/80/850c81ff00fe8a3235d3a37de20af192ba871998392cdb3ce64d96abcad5/cdot-0.2.1.tar.gz#sha256=5b0b5f642923c5e54fe7fe59b7d5f78dfd538bc4e0a07fc67df9ef0b06b88b53 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.2.1 2022-04-14T03:05:48,704 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/6e/34/de1475aad1654bc2d9f96ef673784966ae8e6520839e43d917f3bb3a43e1/cdot-0.2.2-py3-none-any.whl#sha256=5aab43860903c145edf79d5ae101add32f1747d19bb5757c93bb593b4f0ce487 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,705 Found link https://files.pythonhosted.org/packages/0a/4a/c7e2522e7ae27004f112a22a0899b12f400ea4fbdfecbbe05fe3e85d0d7b/cdot-0.2.2.tar.gz#sha256=25a389385d180928e2bd08dea78ed888a3223a9c20924af37af6a9443db1cb7e (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.2.2 2022-04-14T03:05:48,705 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/b2/40/5fe532389b78305995e048eadf74cd150c9f5dd70f0d951c50704aea6978/cdot-0.2.3-py3-none-any.whl#sha256=8c9548442898ea3d80264705866b6902faa29fea95a28b2c70c0f1aa7d545f7b (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,707 Found link https://files.pythonhosted.org/packages/98/22/aa31a84a878497dce31ea6c055d59affd32764dc981b8bb46800ca897a5b/cdot-0.2.3.tar.gz#sha256=92d246d5b61df5c3c25c32ed5ef47058d0648f52d1398921b3d667060c7d5cc5 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.2.3 2022-04-14T03:05:48,707 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/ff/07/0fb447f1d69692e87d6479eae39f3566e7118dd09849de9c67c349bf65c9/cdot-0.2.4-py3-none-any.whl#sha256=2a03c45c54136f22f2ee632744fa49e09605188f44f9c805d43d1e8d2fbbb692 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,708 Skipping link: No binaries permitted for cdot: https://files.pythonhosted.org/packages/36/bc/70617640ed9bd6bdbfded7a709e79eda0fe1508a7458b09b1538e538e87d/cdot-0.2.5-py3-none-any.whl#sha256=00546f408e457befc10e500a1e74bbf5f42dba469e51d6c11d055be919bed36d (from https://pypi.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,709 Found link https://files.pythonhosted.org/packages/f6/8d/3023810489dd836e5d0df2d98de6fb1ef19e5fac55d19399f8414eb4564b/cdot-0.2.5.tar.gz#sha256=aa0d72e5cc376d16c716074c6a15d9f9575f7efa25bfdfca814a8e9d773e74d7 (from https://pypi.org/simple/cdot/) (requires-python:>=3.8), version: 0.2.5 2022-04-14T03:05:48,710 Fetching project page and analyzing links: https://www.piwheels.org/simple/cdot/ 2022-04-14T03:05:48,710 Getting page https://www.piwheels.org/simple/cdot/ 2022-04-14T03:05:48,712 Found index url https://www.piwheels.org/simple 2022-04-14T03:05:48,934 Skipping link: No binaries permitted for cdot: https://www.piwheels.org/simple/cdot/cdot-0.2.3-py3-none-any.whl#sha256=a1d14da59850b5df181f40a7d2ffd41f81ebf07ac8395edb83d7aa4648a579ef (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,935 Skipping link: No binaries permitted for cdot: https://www.piwheels.org/simple/cdot/cdot-0.2.2-py3-none-any.whl#sha256=4f5f50ad4c6f9319a98026732ded7e99b336a4c1da5a7e70684f10cc852ef036 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,936 Skipping link: No binaries permitted for cdot: https://www.piwheels.org/simple/cdot/cdot-0.2.1-py3-none-any.whl#sha256=59571b8928689dc694a90ccd4d44d827dfe00eb09010328766cac3986f55b315 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,936 Skipping link: No binaries permitted for cdot: https://www.piwheels.org/simple/cdot/cdot-0.1.1-py3-none-any.whl#sha256=5d90d2b2abd202ce3a63e85c9dd7bb20658f273945be1c0af354e50a1971dc17 (from https://www.piwheels.org/simple/cdot/) (requires-python:>=3.8) 2022-04-14T03:05:48,937 Skipping link: not a file: https://www.piwheels.org/simple/cdot/ 2022-04-14T03:05:48,937 Skipping link: not a file: https://pypi.org/simple/cdot/ 2022-04-14T03:05:48,983 Given no hashes to check 1 links for project 'cdot': discarding no candidates 2022-04-14T03:05:49,025 Collecting cdot==0.2.5 2022-04-14T03:05:49,029 Created temporary directory: /tmp/pip-unpack-zkb9zc_q 2022-04-14T03:05:49,264 Downloading cdot-0.2.5.tar.gz (17 kB) 2022-04-14T03:05:49,386 Added cdot==0.2.5 from https://files.pythonhosted.org/packages/f6/8d/3023810489dd836e5d0df2d98de6fb1ef19e5fac55d19399f8414eb4564b/cdot-0.2.5.tar.gz#sha256=aa0d72e5cc376d16c716074c6a15d9f9575f7efa25bfdfca814a8e9d773e74d7 to build tracker '/tmp/pip-req-tracker-47u9x3c9' 2022-04-14T03:05:49,396 Created temporary directory: /tmp/pip-build-env-3jzbfaxx 2022-04-14T03:05:49,417 Created temporary directory: /tmp/pip-standalone-pip-64liqaij 2022-04-14T03:05:51,732 Installing build dependencies: started 2022-04-14T03:05:51,734 Running command pip subprocess to install build dependencies 2022-04-14T03:06:03,457 Using pip 22.0.4 from /tmp/pip-standalone-pip-64liqaij/__env_pip__.zip/pip (python 3.9) 2022-04-14T03:06:04,945 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-14T03:06:08,807 Collecting setuptools>=42 2022-04-14T03:06:09,068 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.1.0-py3-none-any.whl (1.1 MB) 2022-04-14T03:06:09,727 Collecting wheel 2022-04-14T03:06:09,759 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-04-14T03:06:13,756 Installing collected packages: wheel, setuptools 2022-04-14T03:06:14,046 Creating /tmp/pip-build-env-3jzbfaxx/overlay/bin 2022-04-14T03:06:14,050 changing mode of /tmp/pip-build-env-3jzbfaxx/overlay/bin/wheel to 755 2022-04-14T03:06:18,849 Successfully installed setuptools-62.1.0 wheel-0.37.1 2022-04-14T03:06:19,514 Installing build dependencies: finished with status 'done' 2022-04-14T03:06:19,540 Getting requirements to build wheel: started 2022-04-14T03:06:19,542 Running command Getting requirements to build wheel 2022-04-14T03:06:21,311 running egg_info 2022-04-14T03:06:21,360 writing manifest file 'cdot.egg-info/SOURCES.txt' 2022-04-14T03:06:21,479 Getting requirements to build wheel: finished with status 'done' 2022-04-14T03:06:21,499 Created temporary directory: /tmp/pip-modern-metadata-w6hslpvg 2022-04-14T03:06:21,505 Preparing metadata (pyproject.toml): started 2022-04-14T03:06:21,507 Running command Preparing metadata (pyproject.toml) 2022-04-14T03:06:23,146 running dist_info 2022-04-14T03:06:23,174 creating /tmp/pip-modern-metadata-w6hslpvg/cdot.egg-info 2022-04-14T03:06:23,187 writing manifest file '/tmp/pip-modern-metadata-w6hslpvg/cdot.egg-info/SOURCES.txt' 2022-04-14T03:06:23,215 writing manifest file '/tmp/pip-modern-metadata-w6hslpvg/cdot.egg-info/SOURCES.txt' 2022-04-14T03:06:23,472 Preparing metadata (pyproject.toml): finished with status 'done' 2022-04-14T03:06:23,486 Source in /tmp/pip-wheel-1lfjymhn/cdot_78feed43d59b493e93657d28765644f7 has version 0.2.5, which satisfies requirement cdot==0.2.5 from https://files.pythonhosted.org/packages/f6/8d/3023810489dd836e5d0df2d98de6fb1ef19e5fac55d19399f8414eb4564b/cdot-0.2.5.tar.gz#sha256=aa0d72e5cc376d16c716074c6a15d9f9575f7efa25bfdfca814a8e9d773e74d7 2022-04-14T03:06:23,488 Removed cdot==0.2.5 from https://files.pythonhosted.org/packages/f6/8d/3023810489dd836e5d0df2d98de6fb1ef19e5fac55d19399f8414eb4564b/cdot-0.2.5.tar.gz#sha256=aa0d72e5cc376d16c716074c6a15d9f9575f7efa25bfdfca814a8e9d773e74d7 from build tracker '/tmp/pip-req-tracker-47u9x3c9' 2022-04-14T03:06:23,501 Created temporary directory: /tmp/pip-unpack-b081yl33 2022-04-14T03:06:23,502 Building wheels for collected packages: cdot 2022-04-14T03:06:23,512 Created temporary directory: /tmp/pip-wheel-xtosbs0i 2022-04-14T03:06:23,512 Destination directory: /tmp/pip-wheel-xtosbs0i 2022-04-14T03:06:23,517 Building wheel for cdot (pyproject.toml): started 2022-04-14T03:06:23,519 Running command Building wheel for cdot (pyproject.toml) 2022-04-14T03:06:25,240 running bdist_wheel 2022-04-14T03:06:25,688 running build 2022-04-14T03:06:25,689 running build_py 2022-04-14T03:06:25,696 creating build 2022-04-14T03:06:25,697 creating build/lib 2022-04-14T03:06:25,698 creating build/lib/tests 2022-04-14T03:06:25,700 copying tests/test_json_data_provider.py -> build/lib/tests 2022-04-14T03:06:25,703 copying tests/genome.py -> build/lib/tests 2022-04-14T03:06:25,706 copying tests/__init__.py -> build/lib/tests 2022-04-14T03:06:25,709 copying tests/test_pyhgvs.py -> build/lib/tests 2022-04-14T03:06:25,712 copying tests/benchmark_hgvs.py -> build/lib/tests 2022-04-14T03:06:25,716 creating build/lib/cdot 2022-04-14T03:06:25,717 copying cdot/__init__.py -> build/lib/cdot 2022-04-14T03:06:25,722 creating build/lib/cdot/pyhgvs 2022-04-14T03:06:25,723 copying cdot/pyhgvs/pyhgvs_transcript.py -> build/lib/cdot/pyhgvs 2022-04-14T03:06:25,727 copying cdot/pyhgvs/__init__.py -> build/lib/cdot/pyhgvs 2022-04-14T03:06:25,730 creating build/lib/cdot/gff 2022-04-14T03:06:25,731 copying cdot/gff/gff_parser.py -> build/lib/cdot/gff 2022-04-14T03:06:25,736 copying cdot/gff/__init__.py -> build/lib/cdot/gff 2022-04-14T03:06:25,739 creating build/lib/cdot/hgvs 2022-04-14T03:06:25,740 copying cdot/hgvs/__init__.py -> build/lib/cdot/hgvs 2022-04-14T03:06:25,744 creating build/lib/cdot/hgvs/dataproviders 2022-04-14T03:06:25,745 copying cdot/hgvs/dataproviders/json_data_provider.py -> build/lib/cdot/hgvs/dataproviders 2022-04-14T03:06:25,749 copying cdot/hgvs/dataproviders/__init__.py -> build/lib/cdot/hgvs/dataproviders 2022-04-14T03:06:25,770 running install 2022-04-14T03:06:25,835 running install_lib 2022-04-14T03:06:25,842 creating build/bdist.linux-armv7l 2022-04-14T03:06:25,842 creating build/bdist.linux-armv7l/wheel 2022-04-14T03:06:25,845 creating build/bdist.linux-armv7l/wheel/tests 2022-04-14T03:06:25,864 creating build/bdist.linux-armv7l/wheel/cdot 2022-04-14T03:06:25,867 creating build/bdist.linux-armv7l/wheel/cdot/pyhgvs 2022-04-14T03:06:25,876 creating build/bdist.linux-armv7l/wheel/cdot/gff 2022-04-14T03:06:25,886 creating build/bdist.linux-armv7l/wheel/cdot/hgvs 2022-04-14T03:06:25,888 creating build/bdist.linux-armv7l/wheel/cdot/hgvs/dataproviders 2022-04-14T03:06:25,902 running install_egg_info 2022-04-14T03:06:25,938 running egg_info 2022-04-14T03:06:25,968 writing manifest file 'cdot.egg-info/SOURCES.txt' 2022-04-14T03:06:25,970 Copying cdot.egg-info to build/bdist.linux-armv7l/wheel/cdot-0.2.5-py3.9.egg-info 2022-04-14T03:06:25,989 running install_scripts 2022-04-14T03:06:26,389 Building wheel for cdot (pyproject.toml): finished with status 'done' 2022-04-14T03:06:26,402 Created wheel for cdot: filename=cdot-0.2.5-py3-none-any.whl size=18858 sha256=95b3f46e2bf11e295861813fcc0137b3fe58a92791c2e4631af124532d5323e2 2022-04-14T03:06:26,404 Stored in directory: /tmp/pip-ephem-wheel-cache-hf4wtpvn/wheels/53/67/f4/2180a07e55a9c947814f0d35dbe689e88404947d253d7fe9ce 2022-04-14T03:06:26,425 Successfully built cdot 2022-04-14T03:06:26,433 Removed build tracker: '/tmp/pip-req-tracker-47u9x3c9'