2022-04-15T18:49:32,625 Created temporary directory: /tmp/pip-ephem-wheel-cache-b68t4ebp
2022-04-15T18:49:32,631 Created temporary directory: /tmp/pip-req-tracker-jf84dmc1
2022-04-15T18:49:32,632 Initialized build tracking at /tmp/pip-req-tracker-jf84dmc1
2022-04-15T18:49:32,632 Created build tracker: /tmp/pip-req-tracker-jf84dmc1
2022-04-15T18:49:32,633 Entered build tracker: /tmp/pip-req-tracker-jf84dmc1
2022-04-15T18:49:32,634 Created temporary directory: /tmp/pip-wheel-3cpo1bsx
2022-04-15T18:49:32,701 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-15T18:49:32,710 2 location(s) to search for versions of satmut-utils:
2022-04-15T18:49:32,710 * https://pypi.org/simple/satmut-utils/
2022-04-15T18:49:32,710 * https://www.piwheels.org/simple/satmut-utils/
2022-04-15T18:49:32,711 Fetching project page and analyzing links: https://pypi.org/simple/satmut-utils/
2022-04-15T18:49:32,712 Getting page https://pypi.org/simple/satmut-utils/
2022-04-15T18:49:32,715 Found index url https://pypi.org/simple
2022-04-15T18:49:32,839   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/9d/7d/aa6a904965242a0c56c1ecc510cf3f4840936f6087b6f0203a9a718743c1/satmut_utils-1.0.0-py3-none-any.whl#sha256=11339e0422b211f5b9eb700af38fbbd6aebc18b9b064ac80d2cf6747968bc5f6 (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-04-15T18:49:32,841   Found link https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz#sha256=9ce9ad080c94d8c79878c1fbac3e03462c616d93fc92af44cb0c920ff6223b6d (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.0
2022-04-15T18:49:32,842 Fetching project page and analyzing links: https://www.piwheels.org/simple/satmut-utils/
2022-04-15T18:49:32,842 Getting page https://www.piwheels.org/simple/satmut-utils/
2022-04-15T18:49:32,844 Found index url https://www.piwheels.org/simple
2022-04-15T18:49:33,045 Skipping link: not a file: https://www.piwheels.org/simple/satmut-utils/
2022-04-15T18:49:33,046 Skipping link: not a file: https://pypi.org/simple/satmut-utils/
2022-04-15T18:49:33,080 Given no hashes to check 1 links for project 'satmut-utils': discarding no candidates
2022-04-15T18:49:33,112 Collecting satmut-utils==1.0.0
2022-04-15T18:49:33,116   Created temporary directory: /tmp/pip-unpack-_zbhohoz
2022-04-15T18:49:36,961   Downloading satmut_utils-1.0.0.tar.gz (12.0 MB)
2022-04-15T18:49:41,124   Added satmut-utils==1.0.0 from https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz#sha256=9ce9ad080c94d8c79878c1fbac3e03462c616d93fc92af44cb0c920ff6223b6d to build tracker '/tmp/pip-req-tracker-jf84dmc1'
2022-04-15T18:49:41,133   Created temporary directory: /tmp/pip-build-env-jkpkg0g6
2022-04-15T18:49:41,147   Created temporary directory: /tmp/pip-standalone-pip-oz5usuvh
2022-04-15T18:49:43,538   Installing build dependencies: started
2022-04-15T18:49:43,540   Running command pip subprocess to install build dependencies
2022-04-15T18:49:53,635   Using pip 22.0.4 from /tmp/pip-standalone-pip-oz5usuvh/__env_pip__.zip/pip (python 3.7)
2022-04-15T18:49:55,118   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-15T18:49:58,917   Collecting setuptools>=59
2022-04-15T18:49:59,179     Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.1.0-py3-none-any.whl (1.1 MB)
2022-04-15T18:49:59,829   Collecting wheel
2022-04-15T18:49:59,865     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-04-15T18:50:09,356   Installing collected packages: wheel, setuptools
2022-04-15T18:50:09,619     Creating /tmp/pip-build-env-jkpkg0g6/overlay/bin
2022-04-15T18:50:09,624     changing mode of /tmp/pip-build-env-jkpkg0g6/overlay/bin/wheel to 755
2022-04-15T18:50:14,133   Successfully installed setuptools-62.1.0 wheel-0.37.1
2022-04-15T18:50:14,793   Installing build dependencies: finished with status 'done'
2022-04-15T18:50:14,820   Getting requirements to build wheel: started
2022-04-15T18:50:14,823   Running command Getting requirements to build wheel
2022-04-15T18:50:16,752   running egg_info
2022-04-15T18:50:16,813   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-04-15T18:50:16,825   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-04-15T18:50:16,955   Getting requirements to build wheel: finished with status 'done'
2022-04-15T18:50:16,975   Created temporary directory: /tmp/pip-modern-metadata-rfo53wef
2022-04-15T18:50:16,980   Preparing metadata (pyproject.toml): started
2022-04-15T18:50:16,983   Running command Preparing metadata (pyproject.toml)
2022-04-15T18:50:18,751   running dist_info
2022-04-15T18:50:18,779   creating /tmp/pip-modern-metadata-rfo53wef/satmut_utils.egg-info
2022-04-15T18:50:18,795   writing manifest file '/tmp/pip-modern-metadata-rfo53wef/satmut_utils.egg-info/SOURCES.txt'
2022-04-15T18:50:18,831   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-04-15T18:50:18,841   writing manifest file '/tmp/pip-modern-metadata-rfo53wef/satmut_utils.egg-info/SOURCES.txt'
2022-04-15T18:50:19,093   Preparing metadata (pyproject.toml): finished with status 'done'
2022-04-15T18:50:19,108   Source in /tmp/pip-wheel-3cpo1bsx/satmut-utils_5ab82fe60898429288f77af3b19152eb has version 1.0.0, which satisfies requirement satmut-utils==1.0.0 from https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz#sha256=9ce9ad080c94d8c79878c1fbac3e03462c616d93fc92af44cb0c920ff6223b6d
2022-04-15T18:50:19,110   Removed satmut-utils==1.0.0 from https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz#sha256=9ce9ad080c94d8c79878c1fbac3e03462c616d93fc92af44cb0c920ff6223b6d from build tracker '/tmp/pip-req-tracker-jf84dmc1'
2022-04-15T18:50:19,124 Created temporary directory: /tmp/pip-unpack-f51wqd_5
2022-04-15T18:50:19,125 Building wheels for collected packages: satmut-utils
2022-04-15T18:50:19,134   Created temporary directory: /tmp/pip-wheel-dg1kut62
2022-04-15T18:50:19,135   Destination directory: /tmp/pip-wheel-dg1kut62
2022-04-15T18:50:19,140   Building wheel for satmut-utils (pyproject.toml): started
2022-04-15T18:50:19,142   Running command Building wheel for satmut-utils (pyproject.toml)
2022-04-15T18:50:20,966   running bdist_wheel
2022-04-15T18:50:21,388   running build
2022-04-15T18:50:21,388   running build_py
2022-04-15T18:50:21,396   creating build
2022-04-15T18:50:21,397   creating build/lib
2022-04-15T18:50:21,398   creating build/lib/core_utils
2022-04-15T18:50:21,400   copying src/core_utils/__init__.py -> build/lib/core_utils
2022-04-15T18:50:21,403   copying src/core_utils/string_utils.py -> build/lib/core_utils
2022-04-15T18:50:21,406   copying src/core_utils/feature_file_utils.py -> build/lib/core_utils
2022-04-15T18:50:21,410   copying src/core_utils/vcf_utils.py -> build/lib/core_utils
2022-04-15T18:50:21,415   copying src/core_utils/file_utils.py -> build/lib/core_utils
2022-04-15T18:50:21,423   creating build/lib/scripts
2022-04-15T18:50:21,424   copying src/scripts/__init__.py -> build/lib/scripts
2022-04-15T18:50:21,427   copying src/scripts/run_fastq_preprocessor.py -> build/lib/scripts
2022-04-15T18:50:21,431   copying src/scripts/run_bowtie2_aligner.py -> build/lib/scripts
2022-04-15T18:50:21,436   creating build/lib/satmut_utils
2022-04-15T18:50:21,437   copying src/satmut_utils/definitions.py -> build/lib/satmut_utils
2022-04-15T18:50:21,441   copying src/satmut_utils/__init__.py -> build/lib/satmut_utils
2022-04-15T18:50:21,443   copying src/satmut_utils/satmut_utils.py -> build/lib/satmut_utils
2022-04-15T18:50:21,450   creating build/lib/analysis
2022-04-15T18:50:21,452   copying src/analysis/variant_caller.py -> build/lib/analysis
2022-04-15T18:50:21,459   copying src/analysis/references.py -> build/lib/analysis
2022-04-15T18:50:21,463   copying src/analysis/__init__.py -> build/lib/analysis
2022-04-15T18:50:21,465   copying src/analysis/read_preprocessor.py -> build/lib/analysis
2022-04-15T18:50:21,472   copying src/analysis/read_editor.py -> build/lib/analysis
2022-04-15T18:50:21,477   copying src/analysis/coordinate_mapper.py -> build/lib/analysis
2022-04-15T18:50:21,482   copying src/analysis/aligners.py -> build/lib/analysis
2022-04-15T18:50:21,486   copying src/analysis/seq_utils.py -> build/lib/analysis
2022-04-15T18:50:21,492   creating build/lib/tests
2022-04-15T18:50:21,493   copying src/tests/__init__.py -> build/lib/tests
2022-04-15T18:50:21,498   creating build/lib/tests/core_utils
2022-04-15T18:50:21,499   copying src/tests/core_utils/test_feature_file_utils.py -> build/lib/tests/core_utils
2022-04-15T18:50:21,504   copying src/tests/core_utils/__init__.py -> build/lib/tests/core_utils
2022-04-15T18:50:21,506   copying src/tests/core_utils/test_string_utils.py -> build/lib/tests/core_utils
2022-04-15T18:50:21,509   copying src/tests/core_utils/test_file_utils.py -> build/lib/tests/core_utils
2022-04-15T18:50:21,514   creating build/lib/tests/analysis
2022-04-15T18:50:21,516   copying src/tests/analysis/test_read_preprocessor.py -> build/lib/tests/analysis
2022-04-15T18:50:21,525   copying src/tests/analysis/test_seq_utils.py -> build/lib/tests/analysis
2022-04-15T18:50:21,528   copying src/tests/analysis/__init__.py -> build/lib/tests/analysis
2022-04-15T18:50:21,530   copying src/tests/analysis/test_coordinate_mapper.py -> build/lib/tests/analysis
2022-04-15T18:50:21,534   copying src/tests/analysis/test_variant_caller.py -> build/lib/tests/analysis
2022-04-15T18:50:21,540   copying src/tests/analysis/test_aligners.py -> build/lib/tests/analysis
2022-04-15T18:50:21,544   copying src/tests/analysis/test_read_editor.py -> build/lib/tests/analysis
2022-04-15T18:50:21,549   copying src/tests/analysis/test_references.py -> build/lib/tests/analysis
2022-04-15T18:50:21,554   creating build/lib/tests/test_data
2022-04-15T18:50:21,555   copying src/tests/test_data/__init__.py -> build/lib/tests/test_data
2022-04-15T18:50:21,558   running egg_info
2022-04-15T18:50:21,622   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-04-15T18:50:21,635   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-04-15T18:50:21,646   copying src/tests/test_data/CBS.fa -> build/lib/tests/test_data
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2022-04-15T18:50:21,884   copying src/tests/test_data/CBS_pEZY3.fa.4.bt2 -> build/lib/tests/test_data
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2022-04-15T18:50:22,175   copying src/tests/test_data/CBS_pEZY3_targets.bed -> build/lib/tests/test_data
2022-04-15T18:50:22,179   copying src/tests/test_data/CBS_sim.R1.fq.gz -> build/lib/tests/test_data
2022-04-15T18:50:22,183   copying src/tests/test_data/CBS_sim.R2.fq.gz -> build/lib/tests/test_data
2022-04-15T18:50:22,187   copying src/tests/test_data/CBS_sim.bam -> build/lib/tests/test_data
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2022-04-15T18:50:22,198   copying src/tests/test_data/CBS_sim_primers.bed -> build/lib/tests/test_data
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2022-04-15T18:50:22,780   copying src/tests/test_data/PKNOX1.fa -> build/lib/tests/test_data
2022-04-15T18:50:22,784   copying src/tests/test_data/appris_human_24_01_2019_selected.fa -> build/lib/tests/test_data
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2022-04-15T18:50:22,793   copying src/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/lib/tests/test_data
2022-04-15T18:50:22,797   copying src/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/lib/tests/test_data
2022-04-15T18:50:22,801   copying src/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/lib/tests/test_data
2022-04-15T18:50:22,805   copying src/tests/test_data/gencode.v29.annotation.gtf -> build/lib/tests/test_data
2022-04-15T18:50:22,812   copying src/tests/test_data/test_preprocess.bam -> build/lib/tests/test_data
2022-04-15T18:50:22,815   copying src/tests/test_data/test_preprocess.bam.bai -> build/lib/tests/test_data
2022-04-15T18:50:22,819   copying src/tests/test_data/test_preprocess.sam -> build/lib/tests/test_data
2022-04-15T18:50:22,824   copying src/tests/test_data/test_preprocess.sort.bam -> build/lib/tests/test_data
2022-04-15T18:50:22,829   copying src/tests/test_data/test_preprocess.sort.bam.bai -> build/lib/tests/test_data
2022-04-15T18:50:22,856   running install
2022-04-15T18:50:22,918   running install_lib
2022-04-15T18:50:22,926   creating build/bdist.linux-armv7l
2022-04-15T18:50:22,927   creating build/bdist.linux-armv7l/wheel
2022-04-15T18:50:22,929   creating build/bdist.linux-armv7l/wheel/core_utils
2022-04-15T18:50:22,952   creating build/bdist.linux-armv7l/wheel/scripts
2022-04-15T18:50:22,965   creating build/bdist.linux-armv7l/wheel/satmut_utils
2022-04-15T18:50:22,979   creating build/bdist.linux-armv7l/wheel/analysis
2022-04-15T18:50:23,020   creating build/bdist.linux-armv7l/wheel/tests
2022-04-15T18:50:23,022   creating build/bdist.linux-armv7l/wheel/tests/core_utils
2022-04-15T18:50:23,041   creating build/bdist.linux-armv7l/wheel/tests/analysis
2022-04-15T18:50:23,083   creating build/bdist.linux-armv7l/wheel/tests/test_data
2022-04-15T18:50:24,146   running install_egg_info
2022-04-15T18:50:24,162   Copying src/satmut_utils.egg-info to build/bdist.linux-armv7l/wheel/satmut_utils-1.0.0-py3.7.egg-info
2022-04-15T18:50:24,186   running install_scripts
2022-04-15T18:50:29,216   Building wheel for satmut-utils (pyproject.toml): finished with status 'done'
2022-04-15T18:50:29,883   Created wheel for satmut-utils: filename=satmut_utils-1.0.0-py3-none-any.whl size=11988008 sha256=851816d46080d9e7a7ac2f235ea191e2a32f936dbd625d4caff953f6b4c1495c
2022-04-15T18:50:29,885   Stored in directory: /tmp/pip-ephem-wheel-cache-b68t4ebp/wheels/f3/6e/b8/84382aef0974bd400f230dc8ac554986186158159a343ef964
2022-04-15T18:50:29,929 Successfully built satmut-utils
2022-04-15T18:50:30,859 Removed build tracker: '/tmp/pip-req-tracker-jf84dmc1'