2022-04-19T08:42:40,943 Created temporary directory: /tmp/pip-ephem-wheel-cache-mhepk85w
2022-04-19T08:42:40,948 Created temporary directory: /tmp/pip-req-tracker-cgzcfdb5
2022-04-19T08:42:40,949 Initialized build tracking at /tmp/pip-req-tracker-cgzcfdb5
2022-04-19T08:42:40,949 Created build tracker: /tmp/pip-req-tracker-cgzcfdb5
2022-04-19T08:42:40,950 Entered build tracker: /tmp/pip-req-tracker-cgzcfdb5
2022-04-19T08:42:40,951 Created temporary directory: /tmp/pip-wheel-f6r5nxyb
2022-04-19T08:42:41,018 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-19T08:42:41,033 2 location(s) to search for versions of pmx-satumut:
2022-04-19T08:42:41,033 * https://pypi.org/simple/pmx-satumut/
2022-04-19T08:42:41,033 * https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T08:42:41,034 Fetching project page and analyzing links: https://pypi.org/simple/pmx-satumut/
2022-04-19T08:42:41,035 Getting page https://pypi.org/simple/pmx-satumut/
2022-04-19T08:42:41,038 Found index url https://pypi.org/simple
2022-04-19T08:42:41,158   Link requires a different Python (3.7.3 not in: '>=2.7, <3'): https://files.pythonhosted.org/packages/9d/f3/d060deac232c6274f255fa1a7bddacc4048cba2d7fb004613fc1dde1123a/pmx-satumut-2.0.2.tar.gz#sha256=cfb6e3669a47f1379616fa156f890c7a7edf1bf59f27e698bc28fa1232e17248 (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=2.7, <3)
2022-04-19T08:42:41,159   Found link https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3 (from https://pypi.org/simple/pmx-satumut/), version: 2.0.3
2022-04-19T08:42:41,160 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T08:42:41,161 Getting page https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T08:42:41,163 Found index url https://www.piwheels.org/simple
2022-04-19T08:42:41,374   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T08:42:41,374   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T08:42:41,375 Skipping link: not a file: https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T08:42:41,375 Skipping link: not a file: https://pypi.org/simple/pmx-satumut/
2022-04-19T08:42:41,408 Given no hashes to check 1 links for project 'pmx-satumut': discarding no candidates
2022-04-19T08:42:41,439 Collecting pmx-satumut==2.0.3
2022-04-19T08:42:41,444   Created temporary directory: /tmp/pip-unpack-sbx22l8_
2022-04-19T08:42:41,539   Downloading pmx-satumut-2.0.3.tar.gz (6.0 MB)
2022-04-19T08:42:50,189   Added pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3 to build tracker '/tmp/pip-req-tracker-cgzcfdb5'
2022-04-19T08:42:50,191   Running setup.py (path:/tmp/pip-wheel-f6r5nxyb/pmx-satumut_ba83813807c14ff4ac71b0e3e807c44c/setup.py) egg_info for package pmx-satumut
2022-04-19T08:42:50,192   Created temporary directory: /tmp/pip-pip-egg-info-xivl176c
2022-04-19T08:42:50,193   Preparing metadata (setup.py): started
2022-04-19T08:42:50,195   Running command python setup.py egg_info
2022-04-19T08:42:52,392   running egg_info
2022-04-19T08:42:52,396   creating /tmp/pip-pip-egg-info-xivl176c/pmx_satumut.egg-info
2022-04-19T08:42:52,413   writing manifest file '/tmp/pip-pip-egg-info-xivl176c/pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T08:42:52,943   writing manifest file '/tmp/pip-pip-egg-info-xivl176c/pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T08:42:52,946   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing 'v2.0.3' to '2.0.3'
2022-04-19T08:42:52,947     warnings.warn(tmpl.format(**locals()))
2022-04-19T08:42:53,088   Preparing metadata (setup.py): finished with status 'done'
2022-04-19T08:42:53,098   Source in /tmp/pip-wheel-f6r5nxyb/pmx-satumut_ba83813807c14ff4ac71b0e3e807c44c has version 2.0.3, which satisfies requirement pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3
2022-04-19T08:42:53,100   Removed pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3 from build tracker '/tmp/pip-req-tracker-cgzcfdb5'
2022-04-19T08:42:53,109 Created temporary directory: /tmp/pip-unpack-bky06v3l
2022-04-19T08:42:53,110 Building wheels for collected packages: pmx-satumut
2022-04-19T08:42:53,119   Created temporary directory: /tmp/pip-wheel-4zuqcy8p
2022-04-19T08:42:53,120   Building wheel for pmx-satumut (setup.py): started
2022-04-19T08:42:53,122   Destination directory: /tmp/pip-wheel-4zuqcy8p
2022-04-19T08:42:53,122   Running command python setup.py bdist_wheel
2022-04-19T08:42:55,151   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing 'v2.0.3' to '2.0.3'
2022-04-19T08:42:55,152     warnings.warn(tmpl.format(**locals()))
2022-04-19T08:42:55,249   running bdist_wheel
2022-04-19T08:42:55,258   running build
2022-04-19T08:42:55,259   running build_py
2022-04-19T08:42:55,272   creating build
2022-04-19T08:42:55,273   creating build/lib.linux-armv7l-3.7
2022-04-19T08:42:55,274   creating build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,276   copying pmx/odict.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,283   copying pmx/histogram.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,287   copying pmx/model.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,292   copying pmx/__init__.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,295   copying pmx/mutdb.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,299   copying pmx/xdrfile.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,303   copying pmx/atom.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,307   copying pmx/xtc.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,310   copying pmx/geometry.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,314   copying pmx/futil.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,318   copying pmx/estimators.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,324   copying pmx/forcefield2.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,330   copying pmx/cpp.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,335   copying pmx/chain.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,339   copying pmx/ffparser.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,344   copying pmx/rotamer.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,348   copying pmx/builder.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,352   copying pmx/library.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,361   copying pmx/atomselection.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,365   copying pmx/options.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,369   copying pmx/molecule.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,374   copying pmx/parser.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,377   copying pmx/ndx.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,381   copying pmx/forcefield.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,389   copying pmx/tCNC.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,392   copying pmx/_version.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T08:42:55,394   running egg_info
2022-04-19T08:42:55,978   writing manifest file 'pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T08:42:56,073   creating build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,074   copying pmx/data/bbdep.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,923   copying pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,927   copying pmx/data/bp.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,941   copying pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,955   copying pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,966   copying pmx/data/ffamber99sb.rtp -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,981   copying pmx/data/ffamber99sbbon.itp -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,987   copying pmx/data/ffamber99sbnb.itp -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:56,992   copying pmx/data/rna.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T08:42:57,000   creating build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,001   copying pmx/data/mutff/ffamber99sb-c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,006   copying pmx/data/mutff/ffamber99sb-n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,009   copying pmx/data/mutff/ffamber99sb.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,014   copying pmx/data/mutff/ffamber99sb.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,019   copying pmx/data/mutff/ffamber99sb.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,023   copying pmx/data/mutff/ffamber99sb.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,218   copying pmx/data/mutff/ffamber99sb.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,289   copying pmx/data/mutff/ffamber99sbbon.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,295   copying pmx/data/mutff/ffamber99sbnb.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,300   copying pmx/data/mutff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,304   copying pmx/data/mutff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,308   copying pmx/data/mutff/tip3p.gro -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,317   copying pmx/data/mutff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T08:42:57,321   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45
2022-04-19T08:42:57,322   copying pmx/data/mutff45/atommass.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45
2022-04-19T08:42:57,327   copying pmx/data/mutff45/elements.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45
2022-04-19T08:42:57,330   copying pmx/data/mutff45/residuetypes.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45
2022-04-19T08:42:57,335   copying pmx/data/mutff45/spc216.gro -> build/lib.linux-armv7l-3.7/pmx/data/mutff45
2022-04-19T08:42:57,341   copying pmx/data/mutff45/specbond.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45
2022-04-19T08:42:57,345   copying pmx/data/mutff45/vdwradii.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45
2022-04-19T08:42:57,349   copying pmx/data/mutff45/xlateat.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45
2022-04-19T08:42:57,352   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,354   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,358   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,362   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,367   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,371   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,374   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,384   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,389   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,393   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,458   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,462   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,466   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,470   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,477   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,485   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,490   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,494   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,498   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,502   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,506   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,653   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,721   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,725   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,730   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,734   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,740   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,744   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,748   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,752   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,756   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,759   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,763   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,767   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:57,771   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,773   copying pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,777   copying pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,782   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,786   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,790   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,795   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,799   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,802   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,811   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,815   copying pmx/data/mutff45/amber99sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,820   copying pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,824   copying pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,828   copying pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,832   copying pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,838   copying pmx/data/mutff45/amber99sbmut.ff/dummies.atp.save -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,842   copying pmx/data/mutff45/amber99sbmut.ff/dummies_nonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,846   copying pmx/data/mutff45/amber99sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,852   copying pmx/data/mutff45/amber99sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,856   copying pmx/data/mutff45/amber99sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,860   copying pmx/data/mutff45/amber99sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,864   copying pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,868   copying pmx/data/mutff45/amber99sbmut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,872   copying pmx/data/mutff45/amber99sbmut.ff/list.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:57,877   copying pmx/data/mutff45/amber99sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,024   copying pmx/data/mutff45/amber99sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,079   copying pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,082   copying pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,087   copying pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,090   copying pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,096   copying pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,100   copying pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,104   copying pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,108   copying pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,112   copying pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,115   copying pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,119   copying pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,123   copying pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:42:58,126   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,128   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,132   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,135   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,140   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,144   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,147   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,156   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,160   copying pmx/data/mutff45/charmm22starmut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,165   copying pmx/data/mutff45/charmm22starmut.ff/cmap.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,170   copying pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,174   copying pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,178   copying pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,182   copying pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,186   copying pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,190   copying pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,199   copying pmx/data/mutff45/charmm22starmut.ff/ffnabonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,207   copying pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,213   copying pmx/data/mutff45/charmm22starmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,225   copying pmx/data/mutff45/charmm22starmut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,228   copying pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,232   copying pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,236   copying pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,240   copying pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,243   copying pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,250   copying pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,254   copying pmx/data/mutff45/charmm22starmut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,384   copying pmx/data/mutff45/charmm22starmut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,452   copying pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,456   copying pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,460   copying pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,464   copying pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,468   copying pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,472   copying pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,477   copying pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,481   copying pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,485   copying pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,488   copying pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,492   copying pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,496   copying pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,500   copying pmx/data/mutff45/charmm22starmut.ff/tips3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,504   copying pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:42:58,508   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,509   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,514   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,518   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,522   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,526   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,529   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,535   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,540   copying pmx/data/mutff45/charmm36mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,544   copying pmx/data/mutff45/charmm36mut.ff/cmap.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,550   copying pmx/data/mutff45/charmm36mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,559   copying pmx/data/mutff45/charmm36mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,566   copying pmx/data/mutff45/charmm36mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,572   copying pmx/data/mutff45/charmm36mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,578   copying pmx/data/mutff45/charmm36mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,582   copying pmx/data/mutff45/charmm36mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,586   copying pmx/data/mutff45/charmm36mut.ff/gb.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,590   copying pmx/data/mutff45/charmm36mut.ff/gromacs_c27_ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,593   copying pmx/data/mutff45/charmm36mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,597   copying pmx/data/mutff45/charmm36mut.ff/mutres.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,601   copying pmx/data/mutff45/charmm36mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,734   copying pmx/data/mutff45/charmm36mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,795   copying pmx/data/mutff45/charmm36mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,799   copying pmx/data/mutff45/charmm36mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,803   copying pmx/data/mutff45/charmm36mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,806   copying pmx/data/mutff45/charmm36mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,810   copying pmx/data/mutff45/charmm36mut.ff/tips3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,814   copying pmx/data/mutff45/charmm36mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,818   copying pmx/data/mutff45/charmm36mut.ff/watermodels.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:42:58,821   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,823   copying pmx/data/mutff45/oplsaamut.ff/1propanol.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,827   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,831   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,835   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,838   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,842   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,848   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,852   copying pmx/data/mutff45/oplsaamut.ff/atomname2type.n2t -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,856   copying pmx/data/mutff45/oplsaamut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,862   copying pmx/data/mutff45/oplsaamut.ff/backup_atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,868   copying pmx/data/mutff45/oplsaamut.ff/dummies.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,875   copying pmx/data/mutff45/oplsaamut.ff/ethanol.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,879   copying pmx/data/mutff45/oplsaamut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,894   copying pmx/data/mutff45/oplsaamut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,902   copying pmx/data/mutff45/oplsaamut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,905   copying pmx/data/mutff45/oplsaamut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,909   copying pmx/data/mutff45/oplsaamut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,914   copying pmx/data/mutff45/oplsaamut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,918   copying pmx/data/mutff45/oplsaamut.ff/methanol.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:58,921   copying pmx/data/mutff45/oplsaamut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:59,068   copying pmx/data/mutff45/oplsaamut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:59,137   copying pmx/data/mutff45/oplsaamut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:59,142   copying pmx/data/mutff45/oplsaamut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:59,146   copying pmx/data/mutff45/oplsaamut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:59,151   copying pmx/data/mutff45/oplsaamut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:59,155   copying pmx/data/mutff45/oplsaamut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:59,160   copying pmx/data/mutff45/oplsaamut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:42:59,165   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45dna
2022-04-19T08:42:59,167   copying pmx/data/mutff45dna/atommass.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna
2022-04-19T08:42:59,172   copying pmx/data/mutff45dna/elements.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna
2022-04-19T08:42:59,176   copying pmx/data/mutff45dna/residuetypes.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna
2022-04-19T08:42:59,181   copying pmx/data/mutff45dna/spc216.gro -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna
2022-04-19T08:42:59,188   copying pmx/data/mutff45dna/specbond.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna
2022-04-19T08:42:59,192   copying pmx/data/mutff45dna/vdwradii.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna
2022-04-19T08:42:59,197   copying pmx/data/mutff45dna/xlateat.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna
2022-04-19T08:42:59,201   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,204   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,210   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,216   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,221   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,228   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,233   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,237   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,248   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,253   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,259   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,267   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,343   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,350   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,355   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,360   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,365   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,372   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,378   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,386   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,393   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,398   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,403   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,407   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,412   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,625   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,687   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,709   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,721   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,727   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,732   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,736   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,740   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,745   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,751   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,755   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,759   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,763   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,767   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,771   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,775   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,780   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:42:59,783   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,785   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,789   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,794   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,799   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,803   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,807   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,817   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,822   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,827   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,833   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,895   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,902   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,906   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,910   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,914   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,920   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,926   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,932   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,937   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,941   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,945   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,950   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:42:59,954   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,085   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,153   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,174   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,187   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,192   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,197   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,201   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,206   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,210   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,216   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,220   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,225   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,229   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,233   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,237   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,241   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,246   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:00,249   creating build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,251   copying pmx/data/mutff45dna/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,258   copying pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,267   copying pmx/data/mutff45dna/charmm36m-mut.ff/dna.rtp_backup -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,273   copying pmx/data/mutff45dna/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,335   copying pmx/data/mutff45dna/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,421   copying pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,426   copying pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,430   copying pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,434   copying pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,438   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,442   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,446   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,451   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,455   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,459   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,512   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,517   copying pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,536   copying pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,548   copying pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,552   copying pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,556   copying pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,559   copying pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,563   copying pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,567   copying pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:00,571   creating build/lib.linux-armv7l-3.7/pmx/extensions
2022-04-19T08:43:00,572   creating build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,573   copying pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,579   copying pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,584   copying pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,590   copying pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,594   copying pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,598   copying pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,602   copying pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,607   creating build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,609   copying pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,614   copying pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,621   copying pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,627   copying pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,632   copying pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,637   copying pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,641   copying pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,645   copying pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:00,649   creating build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,650   copying pmx/scripts/__init__.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,654   copying pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,661   copying pmx/scripts/cli.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,665   copying pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,672   copying pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,679   copying pmx/scripts/make_amber.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,683   copying pmx/scripts/md_setup.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,688   copying pmx/scripts/mutate.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,693   copying pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,698   copying pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T08:43:00,702   creating build/lib.linux-armv7l-3.7/pmx/scripts/ligands
2022-04-19T08:43:00,703   copying pmx/scripts/ligands/atoms_to_morph.py -> build/lib.linux-armv7l-3.7/pmx/scripts/ligands
2022-04-19T08:43:00,711   copying pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/lib.linux-armv7l-3.7/pmx/scripts/ligands
2022-04-19T08:43:00,720   copying pmx/scripts/ligands/build_mst_graph.py -> build/lib.linux-armv7l-3.7/pmx/scripts/ligands
2022-04-19T08:43:00,725   copying pmx/scripts/ligands/make_hybrid.py -> build/lib.linux-armv7l-3.7/pmx/scripts/ligands
2022-04-19T08:43:00,732   copying pmx/scripts/ligands/one_ff_file.py -> build/lib.linux-armv7l-3.7/pmx/scripts/ligands
2022-04-19T08:43:00,743   UPDATING build/lib.linux-armv7l-3.7/pmx/_version.py
2022-04-19T08:43:00,745   set build/lib.linux-armv7l-3.7/pmx/_version.py to 'v2.0.3'
2022-04-19T08:43:00,746   running build_ext
2022-04-19T08:43:00,757   creating build/temp.linux-armv7l-3.7
2022-04-19T08:43:00,757   creating build/temp.linux-armv7l-3.7/pmx
2022-04-19T08:43:00,758   creating build/temp.linux-armv7l-3.7/pmx/extensions
2022-04-19T08:43:00,760   creating build/temp.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T08:43:00,762   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.7m -c pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-3.7/pmx/extensions/pmx/Energy.o
2022-04-19T08:43:01,507   pmx/extensions/pmx/Energy.c: In function ‘wrap_calc_improper_energy’:
2022-04-19T08:43:01,508   pmx/extensions/pmx/Energy.c:287:10: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration]
2022-04-19T08:43:01,508      mult = PyInt_AsLong( PySequence_GetItem(dihedO, 7) );
2022-04-19T08:43:01,509             ^~~~~~~~~~~~
2022-04-19T08:43:01,509             PyLong_AsLong
2022-04-19T08:43:03,035   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.7m -c pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-3.7/pmx/extensions/pmx/Geometry.o
2022-04-19T08:43:03,684   pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2022-04-19T08:43:03,685   pmx/extensions/pmx/Geometry.c:520:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:43:03,685      int nx, ny, nz;
2022-04-19T08:43:03,686                  ^~
2022-04-19T08:43:03,687   pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2022-04-19T08:43:03,687   pmx/extensions/pmx/Geometry.c:579:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:43:03,688      int nx, ny, nz;
2022-04-19T08:43:03,688                  ^~
2022-04-19T08:43:07,503   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.7m -c pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-3.7/pmx/extensions/pmx/init.o
2022-04-19T08:43:08,104   pmx/extensions/pmx/init.c: In function ‘init_pmx’:
2022-04-19T08:43:08,105   pmx/extensions/pmx/init.c:66:10: warning: implicit declaration of function ‘Py_InitModule3’; did you mean ‘Py_Initialize’? [-Wimplicit-function-declaration]
2022-04-19T08:43:08,106      (void) Py_InitModule3("_pmx",pmx_methods,NULL);
2022-04-19T08:43:08,106             ^~~~~~~~~~~~~~
2022-04-19T08:43:08,106             Py_Initialize
2022-04-19T08:43:08,308   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.7m -c pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-3.7/pmx/extensions/pmx/wrap_Geometry.o
2022-04-19T08:43:08,962   pmx/extensions/pmx/wrap_Geometry.c: In function ‘wrap_box_to_cryst1’:
2022-04-19T08:43:08,963   pmx/extensions/pmx/wrap_Geometry.c:288:10: warning: implicit declaration of function ‘PyString_FromString’; did you mean ‘PyLong_FromString’? [-Wimplicit-function-declaration]
2022-04-19T08:43:08,963      return PyString_FromString( line );
2022-04-19T08:43:08,964             ^~~~~~~~~~~~~~~~~~~
2022-04-19T08:43:08,964             PyLong_FromString
2022-04-19T08:43:08,964   pmx/extensions/pmx/wrap_Geometry.c:288:10: warning: returning ‘int’ from a function with return type ‘PyObject *’ {aka ‘struct _object *’} makes pointer from integer without a cast [-Wint-conversion]
2022-04-19T08:43:08,965      return PyString_FromString( line );
2022-04-19T08:43:08,965             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-04-19T08:43:08,977   pmx/extensions/pmx/wrap_Geometry.c: In function ‘get_bond_contribution’:
2022-04-19T08:43:08,977   pmx/extensions/pmx/wrap_Geometry.c:300:16: warning: implicit declaration of function ‘PyString_AsString’; did you mean ‘PyBytes_AsString’? [-Wimplicit-function-declaration]
2022-04-19T08:43:08,978      char *elem = PyString_AsString( PyObject_GetAttrString(atom, "symbol") );
2022-04-19T08:43:08,978                   ^~~~~~~~~~~~~~~~~
2022-04-19T08:43:08,978                   PyBytes_AsString
2022-04-19T08:43:08,979   pmx/extensions/pmx/wrap_Geometry.c:300:16: warning: initialization of ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2022-04-19T08:43:08,987   pmx/extensions/pmx/wrap_Geometry.c: In function ‘atom_ids_from_py_atomlist’:
2022-04-19T08:43:08,988   pmx/extensions/pmx/wrap_Geometry.c:320:20: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration]
2022-04-19T08:43:08,988        int atom_id =  PyInt_AsLong (PyObject_GetAttrString(atom,"id") ) - 1;
2022-04-19T08:43:08,989                       ^~~~~~~~~~~~
2022-04-19T08:43:08,989                       PyLong_AsLong
2022-04-19T08:43:11,484   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-3.7/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-3.7/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-3.7/pmx/extensions/pmx/init.o build/temp.linux-armv7l-3.7/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-3.7/pmx/_pmx.cpython-37m-arm-linux-gnueabihf.so
2022-04-19T08:43:17,931   creating build/temp.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T08:43:17,932   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.7m -c pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-3.7/pmx/extensions/xdr/xdrfile.o
2022-04-19T08:43:18,029   pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:43:18,029     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T08:43:18,204   In file included from pmx/extensions/xdr/xdrfile.c:60:
2022-04-19T08:43:18,205   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:43:18,205     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T08:43:18,219   pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2022-04-19T08:43:18,220   pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:43:18,220        while (size >= num && num_of_bits < 32)
2022-04-19T08:43:18,221                    ^~
2022-04-19T08:43:18,221   pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2022-04-19T08:43:18,221   pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,222        while (bytes[num_of_bytes] >= num)
2022-04-19T08:43:18,222                                   ^~
2022-04-19T08:43:18,223   pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2022-04-19T08:43:18,223   pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:43:18,224        if (num_of_bits >= num_of_bytes * 8)
2022-04-19T08:43:18,224                        ^~
2022-04-19T08:43:18,224   pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:43:18,225      for (i = 0; i < num_of_bytes; i++)
2022-04-19T08:43:18,225                    ^
2022-04-19T08:43:18,225   pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:43:18,226      for (i = 0; i < num_of_bytes-1; i++)
2022-04-19T08:43:18,226                    ^
2022-04-19T08:43:18,226   pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2022-04-19T08:43:18,227   pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,227      if (lastbits < num_of_bits)
2022-04-19T08:43:18,227                   ^
2022-04-19T08:43:18,229   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2022-04-19T08:43:18,229   pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,230     if(size3>xfp->buf1size)
2022-04-19T08:43:18,230             ^
2022-04-19T08:43:18,233   pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,233     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:43:18,233                      ^
2022-04-19T08:43:18,234   pmx/extensions/xdr/xdrfile.c:866:37: warning: operand of ?: changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T08:43:18,234     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:43:18,234                                        ^~~
2022-04-19T08:43:18,238   pmx/extensions/xdr/xdrfile.c:792:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:43:18,238     int smallnum, smaller, larger, i, is_smaller, run;
2022-04-19T08:43:18,239                            ^~~~~~
2022-04-19T08:43:18,239   pmx/extensions/xdr/xdrfile.c:789:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:43:18,240     int smallidx, minidx, maxidx;
2022-04-19T08:43:18,240                   ^~~~~~
2022-04-19T08:43:18,240   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2022-04-19T08:43:18,241   pmx/extensions/xdr/xdrfile.c:1010:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,241     if(size3>xfp->buf1size)
2022-04-19T08:43:18,242             ^
2022-04-19T08:43:18,250   pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:43:18,250     while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2022-04-19T08:43:18,251                     ^
2022-04-19T08:43:18,251   pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,252     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:43:18,252                      ^
2022-04-19T08:43:18,252   pmx/extensions/xdr/xdrfile.c:1139:37: warning: operand of ?: changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T08:43:18,253     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:43:18,253                                        ^~~
2022-04-19T08:43:18,257   pmx/extensions/xdr/xdrfile.c:1271:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:43:18,257     if(tmp==(unsigned int)buf2[0])
2022-04-19T08:43:18,258           ^~
2022-04-19T08:43:18,258   pmx/extensions/xdr/xdrfile.c:999:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:43:18,259     int errval=1;
2022-04-19T08:43:18,259         ^~~~~~
2022-04-19T08:43:18,260   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2022-04-19T08:43:18,260   pmx/extensions/xdr/xdrfile.c:1311:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,261     if(size3>xfp->buf1size)
2022-04-19T08:43:18,261             ^
2022-04-19T08:43:18,264   pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,264     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:43:18,264                      ^
2022-04-19T08:43:18,265   pmx/extensions/xdr/xdrfile.c:1366:37: warning: operand of ?: changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T08:43:18,265     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:43:18,265                                        ^~~
2022-04-19T08:43:18,270   pmx/extensions/xdr/xdrfile.c:1288:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:43:18,271     int smallnum, smaller, larger, i, is_smaller, run;
2022-04-19T08:43:18,271                            ^~~~~~
2022-04-19T08:43:18,272   pmx/extensions/xdr/xdrfile.c:1285:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:43:18,272     int smallidx, minidx, maxidx;
2022-04-19T08:43:18,272                   ^~~~~~
2022-04-19T08:43:18,273   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2022-04-19T08:43:18,273   pmx/extensions/xdr/xdrfile.c:1502:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,273     if(size3>xfp->buf1size) {
2022-04-19T08:43:18,274             ^
2022-04-19T08:43:18,287   pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:43:18,287     while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2022-04-19T08:43:18,287                     ^
2022-04-19T08:43:18,288   pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:43:18,288     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:43:18,288                      ^
2022-04-19T08:43:18,289   pmx/extensions/xdr/xdrfile.c:1622:37: warning: operand of ?: changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T08:43:18,289     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:43:18,289                                        ^~~
2022-04-19T08:43:18,295   pmx/extensions/xdr/xdrfile.c:1732:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:43:18,295     if(tmp==(unsigned int)buf2[0])
2022-04-19T08:43:18,295           ^~
2022-04-19T08:43:18,296   pmx/extensions/xdr/xdrfile.c:1492:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:43:18,296     int errval=1;
2022-04-19T08:43:18,296         ^~~~~~
2022-04-19T08:43:23,132   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.7m -c pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-3.7/pmx/extensions/xdr/xdrfile_trr.o
2022-04-19T08:43:23,229   pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:43:23,229     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T08:43:23,311   In file included from pmx/extensions/xdr/xdrfile_trr.c:41:
2022-04-19T08:43:23,312   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:43:23,312     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T08:43:23,314   In file included from pmx/extensions/xdr/xdrfile_trr.c:42:
2022-04-19T08:43:23,315   pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:43:23,315     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T08:43:23,317   pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2022-04-19T08:43:23,318   pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-19T08:43:23,318            if (slen != strlen(version)+1)
2022-04-19T08:43:23,318                     ^~
2022-04-19T08:43:23,319   pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-19T08:43:23,319            if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2022-04-19T08:43:23,319                                                 ^~
2022-04-19T08:43:24,588   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.7m -c pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-3.7/pmx/extensions/xdr/xdrfile_xtc.o
2022-04-19T08:43:24,750   In file included from pmx/extensions/xdr/xdrfile_xtc.c:31:
2022-04-19T08:43:24,750   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:43:24,751     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T08:43:24,753   In file included from pmx/extensions/xdr/xdrfile_xtc.c:32:
2022-04-19T08:43:24,753   pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:43:24,754     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T08:43:24,755   pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2022-04-19T08:43:24,756   pmx/extensions/xdr/xdrfile_xtc.c:66:8: warning: unused variable ‘j’ [-Wunused-variable]
2022-04-19T08:43:24,756     int i,j,result;
2022-04-19T08:43:24,757           ^
2022-04-19T08:43:24,757   pmx/extensions/xdr/xdrfile_xtc.c:66:6: warning: unused variable ‘i’ [-Wunused-variable]
2022-04-19T08:43:24,758     int i,j,result;
2022-04-19T08:43:24,758         ^
2022-04-19T08:43:25,017   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-3.7/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-3.7/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-3.7/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib -lm -o build/lib.linux-armv7l-3.7/pmx/_xdrio.cpython-37m-arm-linux-gnueabihf.so
2022-04-19T08:43:30,673   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-04-19T08:43:30,674     setuptools.SetuptoolsDeprecationWarning,
2022-04-19T08:43:30,679   running install
2022-04-19T08:43:30,740   running install_lib
2022-04-19T08:43:30,749   creating build/bdist.linux-armv7l
2022-04-19T08:43:30,749   creating build/bdist.linux-armv7l/wheel
2022-04-19T08:43:30,754   creating build/bdist.linux-armv7l/wheel/pmx
2022-04-19T08:43:30,757   creating build/bdist.linux-armv7l/wheel/pmx/data
2022-04-19T08:43:31,628   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2022-04-19T08:43:31,639   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:43:31,946   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:43:32,405   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:32,868   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff
2022-04-19T08:43:33,257   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2022-04-19T08:43:33,260   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:43:33,562   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:43:33,888   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:43:34,183   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:43:34,582   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:43:34,994   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2022-04-19T08:43:35,028   creating build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2022-04-19T08:43:35,167   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2022-04-19T08:43:35,169   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2022-04-19T08:43:35,206   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2022-04-19T08:43:35,238   running install_egg_info
2022-04-19T08:43:35,254   Copying pmx_satumut.egg-info to build/bdist.linux-armv7l/wheel/pmx_satumut-2.0.3-py3.7.egg-info
2022-04-19T08:43:35,283   running install_scripts
2022-04-19T08:43:50,045   Building wheel for pmx-satumut (setup.py): finished with status 'done'
2022-04-19T08:43:50,245   Created wheel for pmx-satumut: filename=pmx_satumut-2.0.3-cp37-cp37m-linux_armv7l.whl size=6539361 sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18
2022-04-19T08:43:50,247   Stored in directory: /tmp/pip-ephem-wheel-cache-mhepk85w/wheels/b8/7d/4d/9a9173197bd60857c2d4d83da0620d58bc3a2981734e4a4ce6
2022-04-19T08:43:50,307 Successfully built pmx-satumut
2022-04-19T08:43:50,691 Removed build tracker: '/tmp/pip-req-tracker-cgzcfdb5'