2022-04-19T08:54:19,299 Created temporary directory: /tmp/pip-ephem-wheel-cache-x7531i0z
2022-04-19T08:54:19,305 Created temporary directory: /tmp/pip-req-tracker-epzh36n1
2022-04-19T08:54:19,305 Initialized build tracking at /tmp/pip-req-tracker-epzh36n1
2022-04-19T08:54:19,306 Created build tracker: /tmp/pip-req-tracker-epzh36n1
2022-04-19T08:54:19,306 Entered build tracker: /tmp/pip-req-tracker-epzh36n1
2022-04-19T08:54:19,307 Created temporary directory: /tmp/pip-wheel-8zd5j8ax
2022-04-19T08:54:19,381 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-19T08:54:19,390 2 location(s) to search for versions of pmx-satumut:
2022-04-19T08:54:19,390 * https://pypi.org/simple/pmx-satumut/
2022-04-19T08:54:19,390 * https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T08:54:19,391 Fetching project page and analyzing links: https://pypi.org/simple/pmx-satumut/
2022-04-19T08:54:19,392 Getting page https://pypi.org/simple/pmx-satumut/
2022-04-19T08:54:19,395 Found index url https://pypi.org/simple
2022-04-19T08:54:19,597   Link requires a different Python (3.9.2 not in: '>=2.7, <3'): https://files.pythonhosted.org/packages/9d/f3/d060deac232c6274f255fa1a7bddacc4048cba2d7fb004613fc1dde1123a/pmx-satumut-2.0.2.tar.gz#sha256=cfb6e3669a47f1379616fa156f890c7a7edf1bf59f27e698bc28fa1232e17248 (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=2.7, <3)
2022-04-19T08:54:19,598   Found link https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3 (from https://pypi.org/simple/pmx-satumut/), version: 2.0.3
2022-04-19T08:54:19,599   Found link https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz#sha256=71edad3f94734fd3f27d12e9f3f5ccf66e2508c865ed8d18d22c02549b8639c6 (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=3.6), version: 2.0.4
2022-04-19T08:54:19,600 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T08:54:19,601 Getting page https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T08:54:19,603 Found index url https://www.piwheels.org/simple
2022-04-19T08:54:19,839   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T08:54:19,839   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T08:54:19,840   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T08:54:19,841   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T08:54:19,841 Skipping link: not a file: https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T08:54:19,842 Skipping link: not a file: https://pypi.org/simple/pmx-satumut/
2022-04-19T08:54:19,886 Given no hashes to check 1 links for project 'pmx-satumut': discarding no candidates
2022-04-19T08:54:19,928 Collecting pmx-satumut==2.0.3
2022-04-19T08:54:19,932   Created temporary directory: /tmp/pip-unpack-nc7ym8yv
2022-04-19T08:54:20,021   Downloading pmx-satumut-2.0.3.tar.gz (6.0 MB)
2022-04-19T08:54:28,083   Added pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3 to build tracker '/tmp/pip-req-tracker-epzh36n1'
2022-04-19T08:54:28,085   Running setup.py (path:/tmp/pip-wheel-8zd5j8ax/pmx-satumut_ffcd5bedd4b24fe18b2276a4962583cc/setup.py) egg_info for package pmx-satumut
2022-04-19T08:54:28,087   Created temporary directory: /tmp/pip-pip-egg-info-ko44gldz
2022-04-19T08:54:28,087   Preparing metadata (setup.py): started
2022-04-19T08:54:28,089   Running command python setup.py egg_info
2022-04-19T08:54:30,058   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing 'v2.0.3' to '2.0.3'
2022-04-19T08:54:30,059     warnings.warn(tmpl.format(**locals()))
2022-04-19T08:54:30,113   running egg_info
2022-04-19T08:54:30,118   creating /tmp/pip-pip-egg-info-ko44gldz/pmx_satumut.egg-info
2022-04-19T08:54:30,136   writing manifest file '/tmp/pip-pip-egg-info-ko44gldz/pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T08:54:30,657   writing manifest file '/tmp/pip-pip-egg-info-ko44gldz/pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T08:54:30,794   Preparing metadata (setup.py): finished with status 'done'
2022-04-19T08:54:30,804   Source in /tmp/pip-wheel-8zd5j8ax/pmx-satumut_ffcd5bedd4b24fe18b2276a4962583cc has version 2.0.3, which satisfies requirement pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3
2022-04-19T08:54:30,806   Removed pmx-satumut==2.0.3 from https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3 from build tracker '/tmp/pip-req-tracker-epzh36n1'
2022-04-19T08:54:30,814 Created temporary directory: /tmp/pip-unpack-9r6nj_hz
2022-04-19T08:54:30,815 Building wheels for collected packages: pmx-satumut
2022-04-19T08:54:30,824   Created temporary directory: /tmp/pip-wheel-n3yo82lo
2022-04-19T08:54:30,825   Building wheel for pmx-satumut (setup.py): started
2022-04-19T08:54:30,827   Destination directory: /tmp/pip-wheel-n3yo82lo
2022-04-19T08:54:30,827   Running command python setup.py bdist_wheel
2022-04-19T08:54:32,704   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing 'v2.0.3' to '2.0.3'
2022-04-19T08:54:32,705     warnings.warn(tmpl.format(**locals()))
2022-04-19T08:54:32,822   running bdist_wheel
2022-04-19T08:54:33,217   running build
2022-04-19T08:54:33,217   running build_py
2022-04-19T08:54:33,231   creating build
2022-04-19T08:54:33,232   creating build/lib.linux-armv7l-3.9
2022-04-19T08:54:33,233   creating build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,235   copying pmx/model.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,241   copying pmx/library.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,250   copying pmx/atomselection.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,254   copying pmx/ndx.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,258   copying pmx/atom.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,262   copying pmx/xdrfile.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,266   copying pmx/ffparser.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,271   copying pmx/chain.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,276   copying pmx/molecule.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,281   copying pmx/futil.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,285   copying pmx/geometry.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,288   copying pmx/parser.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,292   copying pmx/__init__.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,295   copying pmx/options.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,299   copying pmx/rotamer.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,303   copying pmx/builder.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,307   copying pmx/odict.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,313   copying pmx/forcefield2.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,320   copying pmx/forcefield.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,327   copying pmx/mutdb.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,331   copying pmx/_version.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,334   copying pmx/tCNC.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,339   copying pmx/histogram.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,342   copying pmx/cpp.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,347   copying pmx/estimators.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,352   copying pmx/xtc.py -> build/lib.linux-armv7l-3.9/pmx
2022-04-19T08:54:33,354   running egg_info
2022-04-19T08:54:33,513   writing manifest file 'pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T08:54:33,606   creating build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:33,607   copying pmx/data/bbdep.pkl -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,464   copying pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,467   copying pmx/data/bp.pkl -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,480   copying pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,491   copying pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,502   copying pmx/data/ffamber99sb.rtp -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,516   copying pmx/data/ffamber99sbbon.itp -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,523   copying pmx/data/ffamber99sbnb.itp -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,527   copying pmx/data/rna.pkl -> build/lib.linux-armv7l-3.9/pmx/data
2022-04-19T08:54:34,535   creating build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,537   copying pmx/data/mutff/ffamber99sb-c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,540   copying pmx/data/mutff/ffamber99sb-n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,544   copying pmx/data/mutff/ffamber99sb.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,548   copying pmx/data/mutff/ffamber99sb.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,553   copying pmx/data/mutff/ffamber99sb.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,557   copying pmx/data/mutff/ffamber99sb.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,743   copying pmx/data/mutff/ffamber99sb.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,820   copying pmx/data/mutff/ffamber99sbbon.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,826   copying pmx/data/mutff/ffamber99sbnb.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,830   copying pmx/data/mutff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,834   copying pmx/data/mutff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,838   copying pmx/data/mutff/tip3p.gro -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,848   copying pmx/data/mutff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff
2022-04-19T08:54:34,851   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45
2022-04-19T08:54:34,852   copying pmx/data/mutff45/atommass.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45
2022-04-19T08:54:34,856   copying pmx/data/mutff45/elements.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45
2022-04-19T08:54:34,860   copying pmx/data/mutff45/residuetypes.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45
2022-04-19T08:54:34,865   copying pmx/data/mutff45/spc216.gro -> build/lib.linux-armv7l-3.9/pmx/data/mutff45
2022-04-19T08:54:34,870   copying pmx/data/mutff45/specbond.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45
2022-04-19T08:54:34,874   copying pmx/data/mutff45/vdwradii.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45
2022-04-19T08:54:34,878   copying pmx/data/mutff45/xlateat.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45
2022-04-19T08:54:34,882   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,884   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,889   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,893   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,898   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,902   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,907   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,917   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,922   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,927   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,990   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,994   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:34,998   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,002   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,008   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,014   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,018   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,022   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,025   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,029   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,033   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,176   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,237   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,242   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,247   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,250   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,256   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,260   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,263   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,267   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,271   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,275   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,278   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,282   copying pmx/data/mutff45/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:35,286   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,287   copying pmx/data/mutff45/amber99sbmut.ff/Makefile.am -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,291   copying pmx/data/mutff45/amber99sbmut.ff/Makefile.in -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,296   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,299   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,303   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,308   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,312   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,316   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,324   copying pmx/data/mutff45/amber99sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,328   copying pmx/data/mutff45/amber99sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,333   copying pmx/data/mutff45/amber99sbmut.ff/dna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,336   copying pmx/data/mutff45/amber99sbmut.ff/dna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,340   copying pmx/data/mutff45/amber99sbmut.ff/dna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,344   copying pmx/data/mutff45/amber99sbmut.ff/dna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,350   copying pmx/data/mutff45/amber99sbmut.ff/dummies.atp.save -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,353   copying pmx/data/mutff45/amber99sbmut.ff/dummies_nonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,357   copying pmx/data/mutff45/amber99sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,363   copying pmx/data/mutff45/amber99sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,368   copying pmx/data/mutff45/amber99sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,371   copying pmx/data/mutff45/amber99sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,375   copying pmx/data/mutff45/amber99sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,379   copying pmx/data/mutff45/amber99sbmut.ff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,383   copying pmx/data/mutff45/amber99sbmut.ff/list.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,387   copying pmx/data/mutff45/amber99sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,513   copying pmx/data/mutff45/amber99sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,562   copying pmx/data/mutff45/amber99sbmut.ff/rna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,566   copying pmx/data/mutff45/amber99sbmut.ff/rna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,570   copying pmx/data/mutff45/amber99sbmut.ff/rna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,574   copying pmx/data/mutff45/amber99sbmut.ff/rna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,580   copying pmx/data/mutff45/amber99sbmut.ff/spc.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,583   copying pmx/data/mutff45/amber99sbmut.ff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,587   copying pmx/data/mutff45/amber99sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,591   copying pmx/data/mutff45/amber99sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,595   copying pmx/data/mutff45/amber99sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,598   copying pmx/data/mutff45/amber99sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,602   copying pmx/data/mutff45/amber99sbmut.ff/urea.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,606   copying pmx/data/mutff45/amber99sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:35,609   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,611   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,615   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,619   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,623   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,627   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,630   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,637   copying pmx/data/mutff45/charmm22starmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,641   copying pmx/data/mutff45/charmm22starmut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,646   copying pmx/data/mutff45/charmm22starmut.ff/cmap.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,652   copying pmx/data/mutff45/charmm22starmut.ff/dna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,656   copying pmx/data/mutff45/charmm22starmut.ff/dna.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,660   copying pmx/data/mutff45/charmm22starmut.ff/dna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,664   copying pmx/data/mutff45/charmm22starmut.ff/dna.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,667   copying pmx/data/mutff45/charmm22starmut.ff/dna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,672   copying pmx/data/mutff45/charmm22starmut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,681   copying pmx/data/mutff45/charmm22starmut.ff/ffnabonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,688   copying pmx/data/mutff45/charmm22starmut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,695   copying pmx/data/mutff45/charmm22starmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,706   copying pmx/data/mutff45/charmm22starmut.ff/forcefield.doc -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,710   copying pmx/data/mutff45/charmm22starmut.ff/forcefield.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,714   copying pmx/data/mutff45/charmm22starmut.ff/gb.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,718   copying pmx/data/mutff45/charmm22starmut.ff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,722   copying pmx/data/mutff45/charmm22starmut.ff/lipids.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,725   copying pmx/data/mutff45/charmm22starmut.ff/lipids.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,732   copying pmx/data/mutff45/charmm22starmut.ff/mutres.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,737   copying pmx/data/mutff45/charmm22starmut.ff/mutres.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,844   copying pmx/data/mutff45/charmm22starmut.ff/mutres.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,899   copying pmx/data/mutff45/charmm22starmut.ff/rna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,903   copying pmx/data/mutff45/charmm22starmut.ff/rna.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,906   copying pmx/data/mutff45/charmm22starmut.ff/rna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,910   copying pmx/data/mutff45/charmm22starmut.ff/rna.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,914   copying pmx/data/mutff45/charmm22starmut.ff/rna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,918   copying pmx/data/mutff45/charmm22starmut.ff/rna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,922   copying pmx/data/mutff45/charmm22starmut.ff/spc.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,926   copying pmx/data/mutff45/charmm22starmut.ff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,930   copying pmx/data/mutff45/charmm22starmut.ff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,933   copying pmx/data/mutff45/charmm22starmut.ff/tip4p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,937   copying pmx/data/mutff45/charmm22starmut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,941   copying pmx/data/mutff45/charmm22starmut.ff/tip5p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,945   copying pmx/data/mutff45/charmm22starmut.ff/tips3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,949   copying pmx/data/mutff45/charmm22starmut.ff/watermodels.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:35,952   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,954   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,958   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,961   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,966   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,969   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,973   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,978   copying pmx/data/mutff45/charmm36mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,983   copying pmx/data/mutff45/charmm36mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,987   copying pmx/data/mutff45/charmm36mut.ff/cmap.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:35,993   copying pmx/data/mutff45/charmm36mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,002   copying pmx/data/mutff45/charmm36mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,008   copying pmx/data/mutff45/charmm36mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,014   copying pmx/data/mutff45/charmm36mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,021   copying pmx/data/mutff45/charmm36mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,025   copying pmx/data/mutff45/charmm36mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,031   copying pmx/data/mutff45/charmm36mut.ff/gb.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,035   copying pmx/data/mutff45/charmm36mut.ff/gromacs_c27_ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,039   copying pmx/data/mutff45/charmm36mut.ff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,042   copying pmx/data/mutff45/charmm36mut.ff/mutres.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,046   copying pmx/data/mutff45/charmm36mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,175   copying pmx/data/mutff45/charmm36mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,231   copying pmx/data/mutff45/charmm36mut.ff/spc.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,235   copying pmx/data/mutff45/charmm36mut.ff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,239   copying pmx/data/mutff45/charmm36mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,242   copying pmx/data/mutff45/charmm36mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,246   copying pmx/data/mutff45/charmm36mut.ff/tips3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,250   copying pmx/data/mutff45/charmm36mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,254   copying pmx/data/mutff45/charmm36mut.ff/watermodels.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:36,257   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,259   copying pmx/data/mutff45/oplsaamut.ff/1propanol.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,263   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,266   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,270   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,274   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,278   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,284   copying pmx/data/mutff45/oplsaamut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,288   copying pmx/data/mutff45/oplsaamut.ff/atomname2type.n2t -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,292   copying pmx/data/mutff45/oplsaamut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,299   copying pmx/data/mutff45/oplsaamut.ff/backup_atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,305   copying pmx/data/mutff45/oplsaamut.ff/dummies.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,313   copying pmx/data/mutff45/oplsaamut.ff/ethanol.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,317   copying pmx/data/mutff45/oplsaamut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,333   copying pmx/data/mutff45/oplsaamut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,342   copying pmx/data/mutff45/oplsaamut.ff/forcefield.doc -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,347   copying pmx/data/mutff45/oplsaamut.ff/forcefield.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,351   copying pmx/data/mutff45/oplsaamut.ff/gbsa.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,356   copying pmx/data/mutff45/oplsaamut.ff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,361   copying pmx/data/mutff45/oplsaamut.ff/methanol.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,365   copying pmx/data/mutff45/oplsaamut.ff/mutres.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,474   copying pmx/data/mutff45/oplsaamut.ff/mutres.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,542   copying pmx/data/mutff45/oplsaamut.ff/spc.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,547   copying pmx/data/mutff45/oplsaamut.ff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,551   copying pmx/data/mutff45/oplsaamut.ff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,555   copying pmx/data/mutff45/oplsaamut.ff/tip4p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,559   copying pmx/data/mutff45/oplsaamut.ff/tip5p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,564   copying pmx/data/mutff45/oplsaamut.ff/watermodels.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:36,568   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45dna
2022-04-19T08:54:36,570   copying pmx/data/mutff45dna/atommass.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna
2022-04-19T08:54:36,575   copying pmx/data/mutff45dna/elements.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna
2022-04-19T08:54:36,579   copying pmx/data/mutff45dna/residuetypes.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna
2022-04-19T08:54:36,585   copying pmx/data/mutff45dna/spc216.gro -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna
2022-04-19T08:54:36,592   copying pmx/data/mutff45dna/specbond.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna
2022-04-19T08:54:36,597   copying pmx/data/mutff45dna/vdwradii.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna
2022-04-19T08:54:36,602   copying pmx/data/mutff45dna/xlateat.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna
2022-04-19T08:54:36,606   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,609   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,615   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,620   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,625   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,630   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,635   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,640   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,651   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,656   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,661   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,668   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,731   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,738   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,741   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,746   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,750   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,756   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,761   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,768   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,772   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,776   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,780   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,784   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,788   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,889   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,935   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,957   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,970   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,976   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,982   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,986   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,991   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:36,995   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,000   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,005   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,008   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,013   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,017   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,021   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,025   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,029   copying pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:37,032   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,034   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,038   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,042   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,048   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,052   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,056   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,066   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,071   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,076   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,083   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/backup_mutres -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,147   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,153   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,157   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,162   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,166   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,172   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffberger.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,178   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,184   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,189   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,194   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,198   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,202   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,206   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,455   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,517   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,537   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,548   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,552   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,558   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,561   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,566   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,569   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,575   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,579   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,583   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,587   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,591   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,595   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,598   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,602   copying pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:37,606   creating build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,608   copying pmx/data/mutff45dna/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,614   copying pmx/data/mutff45dna/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,622   copying pmx/data/mutff45dna/charmm36m-mut.ff/dna.rtp_backup -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,629   copying pmx/data/mutff45dna/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,697   copying pmx/data/mutff45dna/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,782   copying pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,786   copying pmx/data/mutff45dna/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,790   copying pmx/data/mutff45dna/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,794   copying pmx/data/mutff45dna/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,798   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,802   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,806   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,811   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,815   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,819   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,880   copying pmx/data/mutff45dna/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,886   copying pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,906   copying pmx/data/mutff45dna/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,915   copying pmx/data/mutff45dna/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,919   copying pmx/data/mutff45dna/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,923   copying pmx/data/mutff45dna/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,927   copying pmx/data/mutff45dna/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,931   copying pmx/data/mutff45dna/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,935   copying pmx/data/mutff45dna/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.9/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:54:37,939   creating build/lib.linux-armv7l-3.9/pmx/extensions
2022-04-19T08:54:37,939   creating build/lib.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:37,941   copying pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:37,947   copying pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:37,952   copying pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:37,958   copying pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:37,962   copying pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:37,966   copying pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:37,971   copying pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:37,976   creating build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:37,977   copying pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:37,982   copying pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:37,990   copying pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:37,996   copying pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:38,002   copying pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:38,008   copying pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:38,012   copying pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:38,017   copying pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:38,021   creating build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,023   copying pmx/scripts/__init__.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,028   copying pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,036   copying pmx/scripts/cli.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,041   copying pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,049   copying pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,057   copying pmx/scripts/make_amber.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,062   copying pmx/scripts/md_setup.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,067   copying pmx/scripts/mutate.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,072   copying pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,077   copying pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-3.9/pmx/scripts
2022-04-19T08:54:38,080   creating build/lib.linux-armv7l-3.9/pmx/scripts/ligands
2022-04-19T08:54:38,082   copying pmx/scripts/ligands/atoms_to_morph.py -> build/lib.linux-armv7l-3.9/pmx/scripts/ligands
2022-04-19T08:54:38,090   copying pmx/scripts/ligands/atoms_to_morph_rdkit2018.py -> build/lib.linux-armv7l-3.9/pmx/scripts/ligands
2022-04-19T08:54:38,098   copying pmx/scripts/ligands/build_mst_graph.py -> build/lib.linux-armv7l-3.9/pmx/scripts/ligands
2022-04-19T08:54:38,104   copying pmx/scripts/ligands/make_hybrid.py -> build/lib.linux-armv7l-3.9/pmx/scripts/ligands
2022-04-19T08:54:38,111   copying pmx/scripts/ligands/one_ff_file.py -> build/lib.linux-armv7l-3.9/pmx/scripts/ligands
2022-04-19T08:54:38,122   UPDATING build/lib.linux-armv7l-3.9/pmx/_version.py
2022-04-19T08:54:38,124   set build/lib.linux-armv7l-3.9/pmx/_version.py to 'v2.0.3'
2022-04-19T08:54:38,125   running build_ext
2022-04-19T08:54:38,136   creating build/temp.linux-armv7l-3.9
2022-04-19T08:54:38,137   creating build/temp.linux-armv7l-3.9/pmx
2022-04-19T08:54:38,138   creating build/temp.linux-armv7l-3.9/pmx/extensions
2022-04-19T08:54:38,139   creating build/temp.linux-armv7l-3.9/pmx/extensions/pmx
2022-04-19T08:54:38,141   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.9 -c pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-3.9/pmx/extensions/pmx/Energy.o
2022-04-19T08:54:38,954   pmx/extensions/pmx/Energy.c: In function ‘wrap_calc_improper_energy’:
2022-04-19T08:54:38,954   pmx/extensions/pmx/Energy.c:287:10: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration]
2022-04-19T08:54:38,955     287 |   mult = PyInt_AsLong( PySequence_GetItem(dihedO, 7) );
2022-04-19T08:54:38,955         |          ^~~~~~~~~~~~
2022-04-19T08:54:38,956         |          PyLong_AsLong
2022-04-19T08:54:40,408   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.9 -c pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-3.9/pmx/extensions/pmx/Geometry.o
2022-04-19T08:54:41,168   pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2022-04-19T08:54:41,169   pmx/extensions/pmx/Geometry.c:520:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:54:41,169     520 |   int nx, ny, nz;
2022-04-19T08:54:41,169         |               ^~
2022-04-19T08:54:41,171   pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2022-04-19T08:54:41,172   pmx/extensions/pmx/Geometry.c:579:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:54:41,172     579 |   int nx, ny, nz;
2022-04-19T08:54:41,172         |               ^~
2022-04-19T08:54:45,100   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.9 -c pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-3.9/pmx/extensions/pmx/init.o
2022-04-19T08:54:45,807   pmx/extensions/pmx/init.c: In function ‘init_pmx’:
2022-04-19T08:54:45,807   pmx/extensions/pmx/init.c:66:10: warning: implicit declaration of function ‘Py_InitModule3’ [-Wimplicit-function-declaration]
2022-04-19T08:54:45,808      66 |   (void) Py_InitModule3("_pmx",pmx_methods,NULL);
2022-04-19T08:54:45,809         |          ^~~~~~~~~~~~~~
2022-04-19T08:54:45,907   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/pmx -I/usr/include/python3.9 -c pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-3.9/pmx/extensions/pmx/wrap_Geometry.o
2022-04-19T08:54:46,669   pmx/extensions/pmx/wrap_Geometry.c: In function ‘wrap_box_to_cryst1’:
2022-04-19T08:54:46,669   pmx/extensions/pmx/wrap_Geometry.c:288:10: warning: implicit declaration of function ‘PyString_FromString’; did you mean ‘PyLong_FromString’? [-Wimplicit-function-declaration]
2022-04-19T08:54:46,670     288 |   return PyString_FromString( line );
2022-04-19T08:54:46,670         |          ^~~~~~~~~~~~~~~~~~~
2022-04-19T08:54:46,670         |          PyLong_FromString
2022-04-19T08:54:46,671   pmx/extensions/pmx/wrap_Geometry.c:288:10: warning: returning ‘int’ from a function with return type ‘PyObject *’ {aka ‘struct _object *’} makes pointer from integer without a cast [-Wint-conversion]
2022-04-19T08:54:46,671     288 |   return PyString_FromString( line );
2022-04-19T08:54:46,671         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-04-19T08:54:46,689   pmx/extensions/pmx/wrap_Geometry.c: In function ‘get_bond_contribution’:
2022-04-19T08:54:46,690   pmx/extensions/pmx/wrap_Geometry.c:300:16: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration]
2022-04-19T08:54:46,690     300 |   char *elem = PyString_AsString( PyObject_GetAttrString(atom, "symbol") );
2022-04-19T08:54:46,691         |                ^~~~~~~~~~~~~~~~~
2022-04-19T08:54:46,691   pmx/extensions/pmx/wrap_Geometry.c:300:16: warning: initialization of ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2022-04-19T08:54:46,703   pmx/extensions/pmx/wrap_Geometry.c: In function ‘atom_ids_from_py_atomlist’:
2022-04-19T08:54:46,704   pmx/extensions/pmx/wrap_Geometry.c:320:20: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration]
2022-04-19T08:54:46,704     320 |     int atom_id =  PyInt_AsLong (PyObject_GetAttrString(atom,"id") ) - 1;
2022-04-19T08:54:46,705         |                    ^~~~~~~~~~~~
2022-04-19T08:54:46,705         |                    PyLong_AsLong
2022-04-19T08:54:49,116   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-3.9/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-3.9/pmx/extensions/pmx/init.o build/temp.linux-armv7l-3.9/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-3.9/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so
2022-04-19T08:54:49,396   creating build/temp.linux-armv7l-3.9/pmx/extensions/xdr
2022-04-19T08:54:49,397   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.9 -c pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-3.9/pmx/extensions/xdr/xdrfile.o
2022-04-19T08:54:49,497   pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:54:49,497       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-04-19T08:54:49,498         |
2022-04-19T08:54:49,673   In file included from pmx/extensions/xdr/xdrfile.c:60:
2022-04-19T08:54:49,673   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:54:49,674       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-04-19T08:54:49,674         |
2022-04-19T08:54:49,690   pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2022-04-19T08:54:49,691   pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:54:49,691     499 |     while (size >= num && num_of_bits < 32)
2022-04-19T08:54:49,691         |                 ^~
2022-04-19T08:54:49,692   pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2022-04-19T08:54:49,692   pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,693     545 |     while (bytes[num_of_bytes] >= num)
2022-04-19T08:54:49,693         |                                ^~
2022-04-19T08:54:49,695   pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2022-04-19T08:54:49,695   pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:54:49,696     654 |     if (num_of_bits >= num_of_bytes * 8)
2022-04-19T08:54:49,696         |                     ^~
2022-04-19T08:54:49,697   pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:54:49,697     656 |   for (i = 0; i < num_of_bytes; i++)
2022-04-19T08:54:49,697         |                 ^
2022-04-19T08:54:49,698   pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:54:49,698     664 |   for (i = 0; i < num_of_bytes-1; i++)
2022-04-19T08:54:49,698         |                 ^
2022-04-19T08:54:49,699   pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2022-04-19T08:54:49,699   pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,699     704 |   if (lastbits < num_of_bits)
2022-04-19T08:54:49,700         |                ^
2022-04-19T08:54:49,703   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2022-04-19T08:54:49,704   pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,705     814 |  if(size3>xfp->buf1size)
2022-04-19T08:54:49,705         |          ^
2022-04-19T08:54:49,708   pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,708     866 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:54:49,709         |                   ^
2022-04-19T08:54:49,709   pmx/extensions/xdr/xdrfile.c:866:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T08:54:49,710     866 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:54:49,710         |                                     ^~~
2022-04-19T08:54:49,715   pmx/extensions/xdr/xdrfile.c:792:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:54:49,716     792 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-04-19T08:54:49,716         |                         ^~~~~~
2022-04-19T08:54:49,716   pmx/extensions/xdr/xdrfile.c:789:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:54:49,717     789 |  int smallidx, minidx, maxidx;
2022-04-19T08:54:49,717         |                ^~~~~~
2022-04-19T08:54:49,718   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2022-04-19T08:54:49,719   pmx/extensions/xdr/xdrfile.c:1010:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,719    1010 |  if(size3>xfp->buf1size)
2022-04-19T08:54:49,720         |          ^
2022-04-19T08:54:49,731   pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:54:49,731    1133 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2022-04-19T08:54:49,732         |                  ^
2022-04-19T08:54:49,732   pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,733    1139 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:54:49,733         |                   ^
2022-04-19T08:54:49,734   pmx/extensions/xdr/xdrfile.c:1139:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T08:54:49,734    1139 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:54:49,735         |                                     ^~~
2022-04-19T08:54:49,742   pmx/extensions/xdr/xdrfile.c:1271:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:54:49,742    1271 |  if(tmp==(unsigned int)buf2[0])
2022-04-19T08:54:49,742         |        ^~
2022-04-19T08:54:49,743   pmx/extensions/xdr/xdrfile.c:999:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:54:49,743     999 |  int errval=1;
2022-04-19T08:54:49,744         |      ^~~~~~
2022-04-19T08:54:49,746   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2022-04-19T08:54:49,747   pmx/extensions/xdr/xdrfile.c:1311:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,748    1311 |  if(size3>xfp->buf1size)
2022-04-19T08:54:49,748         |          ^
2022-04-19T08:54:49,752   pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,752    1366 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:54:49,753         |                   ^
2022-04-19T08:54:49,754   pmx/extensions/xdr/xdrfile.c:1366:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T08:54:49,754    1366 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:54:49,755         |                                     ^~~
2022-04-19T08:54:49,761   pmx/extensions/xdr/xdrfile.c:1288:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:54:49,762    1288 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-04-19T08:54:49,762         |                         ^~~~~~
2022-04-19T08:54:49,763   pmx/extensions/xdr/xdrfile.c:1285:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:54:49,764    1285 |  int smallidx, minidx, maxidx;
2022-04-19T08:54:49,764         |                ^~~~~~
2022-04-19T08:54:49,765   pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2022-04-19T08:54:49,767   pmx/extensions/xdr/xdrfile.c:1502:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,767    1502 |  if(size3>xfp->buf1size) {
2022-04-19T08:54:49,768         |          ^
2022-04-19T08:54:49,783   pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:54:49,783    1617 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2022-04-19T08:54:49,784         |                  ^
2022-04-19T08:54:49,785   pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T08:54:49,785    1622 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:54:49,786         |                   ^
2022-04-19T08:54:49,787   pmx/extensions/xdr/xdrfile.c:1622:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T08:54:49,788    1622 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T08:54:49,788         |                                     ^~~
2022-04-19T08:54:49,796   pmx/extensions/xdr/xdrfile.c:1732:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T08:54:49,797    1732 |  if(tmp==(unsigned int)buf2[0])
2022-04-19T08:54:49,797         |        ^~
2022-04-19T08:54:49,798   pmx/extensions/xdr/xdrfile.c:1492:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-04-19T08:54:49,799    1492 |  int errval=1;
2022-04-19T08:54:49,799         |      ^~~~~~
2022-04-19T08:54:54,778   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.9 -c pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-3.9/pmx/extensions/xdr/xdrfile_trr.o
2022-04-19T08:54:54,879   pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:54:54,879       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-04-19T08:54:54,879         |
2022-04-19T08:54:54,966   In file included from pmx/extensions/xdr/xdrfile_trr.c:41:
2022-04-19T08:54:54,966   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:54:54,967       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-04-19T08:54:54,967         |
2022-04-19T08:54:54,969   In file included from pmx/extensions/xdr/xdrfile_trr.c:42:
2022-04-19T08:54:54,969   pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:54:54,969       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-04-19T08:54:54,970         |
2022-04-19T08:54:54,972   pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2022-04-19T08:54:54,972   pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-19T08:54:54,972     108 |         if (slen != strlen(version)+1)
2022-04-19T08:54:54,973         |                  ^~
2022-04-19T08:54:54,973   pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-19T08:54:54,973     118 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2022-04-19T08:54:54,974         |                                              ^~
2022-04-19T08:54:56,299   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipmx/extensions/xdr -I/usr/include/python3.9 -c pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-3.9/pmx/extensions/xdr/xdrfile_xtc.o
2022-04-19T08:54:56,469   In file included from pmx/extensions/xdr/xdrfile_xtc.c:31:
2022-04-19T08:54:56,469   pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:54:56,470       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-04-19T08:54:56,470         |
2022-04-19T08:54:56,472   In file included from pmx/extensions/xdr/xdrfile_xtc.c:32:
2022-04-19T08:54:56,472   pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T08:54:56,473       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2022-04-19T08:54:56,473         |
2022-04-19T08:54:56,582   pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2022-04-19T08:54:56,583   pmx/extensions/xdr/xdrfile_xtc.c:66:8: warning: unused variable ‘j’ [-Wunused-variable]
2022-04-19T08:54:56,583      66 |  int i,j,result;
2022-04-19T08:54:56,584         |        ^
2022-04-19T08:54:56,584   pmx/extensions/xdr/xdrfile_xtc.c:66:6: warning: unused variable ‘i’ [-Wunused-variable]
2022-04-19T08:54:56,585      66 |  int i,j,result;
2022-04-19T08:54:56,585         |      ^
2022-04-19T08:54:56,867   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-3.9/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-3.9/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib -lm -o build/lib.linux-armv7l-3.9/pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so
2022-04-19T08:54:57,127   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-04-19T08:54:57,127     warnings.warn(
2022-04-19T08:54:57,132   running install
2022-04-19T08:54:57,195   running install_lib
2022-04-19T08:54:57,202   creating build/bdist.linux-armv7l
2022-04-19T08:54:57,203   creating build/bdist.linux-armv7l/wheel
2022-04-19T08:54:57,207   creating build/bdist.linux-armv7l/wheel/pmx
2022-04-19T08:54:57,210   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2022-04-19T08:54:57,261   creating build/bdist.linux-armv7l/wheel/pmx/scripts/ligands
2022-04-19T08:54:57,318   creating build/bdist.linux-armv7l/wheel/pmx/data
2022-04-19T08:54:57,338   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45
2022-04-19T08:54:57,341   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sbmut.ff
2022-04-19T08:54:57,674   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm36mut.ff
2022-04-19T08:54:57,963   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/charmm22starmut.ff
2022-04-19T08:54:58,301   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/amber99sb-star-ildn-mut.ff
2022-04-19T08:54:58,690   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45/oplsaamut.ff
2022-04-19T08:54:59,018   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff
2022-04-19T08:54:59,368   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna
2022-04-19T08:54:59,382   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T08:54:59,844   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/amber99sb-star-ildn-mut.ff
2022-04-19T08:55:00,288   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff45dna/charmm36m-mut.ff
2022-04-19T08:55:01,379   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2022-04-19T08:55:01,381   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2022-04-19T08:55:01,417   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2022-04-19T08:55:01,547   running install_egg_info
2022-04-19T08:55:01,564   Copying pmx_satumut.egg-info to build/bdist.linux-armv7l/wheel/pmx_satumut-2.0.3-py3.9.egg-info
2022-04-19T08:55:01,594   running install_scripts
2022-04-19T08:55:16,604   Building wheel for pmx-satumut (setup.py): finished with status 'done'
2022-04-19T08:55:16,808   Created wheel for pmx-satumut: filename=pmx_satumut-2.0.3-cp39-cp39-linux_armv7l.whl size=6606664 sha256=c88c5fcb51d11c22f11e1b7655a6de1399c175ec56a707b2043b953e583b8195
2022-04-19T08:55:16,810   Stored in directory: /tmp/pip-ephem-wheel-cache-x7531i0z/wheels/d8/ce/1d/3740736bc3fe02e1cb4bae79ee13dd5104b72e08386a76675e
2022-04-19T08:55:16,869 Successfully built pmx-satumut
2022-04-19T08:55:17,259 Removed build tracker: '/tmp/pip-req-tracker-epzh36n1'