2022-04-19T09:08:14,929 Created temporary directory: /tmp/pip-ephem-wheel-cache-p3zcjs5x
2022-04-19T09:08:14,935 Created temporary directory: /tmp/pip-req-tracker-wmgipvrm
2022-04-19T09:08:14,936 Initialized build tracking at /tmp/pip-req-tracker-wmgipvrm
2022-04-19T09:08:14,936 Created build tracker: /tmp/pip-req-tracker-wmgipvrm
2022-04-19T09:08:14,936 Entered build tracker: /tmp/pip-req-tracker-wmgipvrm
2022-04-19T09:08:14,938 Created temporary directory: /tmp/pip-wheel-5nso63r6
2022-04-19T09:08:15,008 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-19T09:08:15,023 2 location(s) to search for versions of pmx-satumut:
2022-04-19T09:08:15,023 * https://pypi.org/simple/pmx-satumut/
2022-04-19T09:08:15,023 * https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T09:08:15,024 Fetching project page and analyzing links: https://pypi.org/simple/pmx-satumut/
2022-04-19T09:08:15,025 Getting page https://pypi.org/simple/pmx-satumut/
2022-04-19T09:08:15,028 Found index url https://pypi.org/simple
2022-04-19T09:08:15,139   Link requires a different Python (3.7.3 not in: '>=2.7, <3'): https://files.pythonhosted.org/packages/9d/f3/d060deac232c6274f255fa1a7bddacc4048cba2d7fb004613fc1dde1123a/pmx-satumut-2.0.2.tar.gz#sha256=cfb6e3669a47f1379616fa156f890c7a7edf1bf59f27e698bc28fa1232e17248 (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=2.7, <3)
2022-04-19T09:08:15,140   Found link https://files.pythonhosted.org/packages/ef/7a/46b2633db0c9cece852152edf13ce0941be555137bfe133c8c38ddeb6f3d/pmx-satumut-2.0.3.tar.gz#sha256=cffd1f6170bcb61b0e6a0acd1335118aa9a9434ba041f79c1b09847eabbf59f3 (from https://pypi.org/simple/pmx-satumut/), version: 2.0.3
2022-04-19T09:08:15,141   Found link https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz#sha256=71edad3f94734fd3f27d12e9f3f5ccf66e2508c865ed8d18d22c02549b8639c6 (from https://pypi.org/simple/pmx-satumut/) (requires-python:>=3.6), version: 2.0.4
2022-04-19T09:08:15,142 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T09:08:15,143 Getting page https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T09:08:15,145 Found index url https://www.piwheels.org/simple
2022-04-19T09:08:15,351   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp39-cp39-linux_armv7l.whl#sha256=c88c5fcb51d11c22f11e1b7655a6de1399c175ec56a707b2043b953e583b8195 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T09:08:15,351   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp39-cp39-linux_armv6l.whl#sha256=c88c5fcb51d11c22f11e1b7655a6de1399c175ec56a707b2043b953e583b8195 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T09:08:15,352   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp37-cp37m-linux_armv7l.whl#sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T09:08:15,352   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp37-cp37m-linux_armv6l.whl#sha256=8924f68e4e17468581042f6ed9ced75532b38316f5f49099911c43e5b3487f18 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T09:08:15,353   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv7l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T09:08:15,353   Skipping link: No binaries permitted for pmx-satumut: https://www.piwheels.org/simple/pmx-satumut/pmx_satumut-2.0.3-cp35-cp35m-linux_armv6l.whl#sha256=48f313e84e29ab2d93241ac2c77777e82287084ee7f4c03b98ba90412abaa8a0 (from https://www.piwheels.org/simple/pmx-satumut/)
2022-04-19T09:08:15,354 Skipping link: not a file: https://www.piwheels.org/simple/pmx-satumut/
2022-04-19T09:08:15,354 Skipping link: not a file: https://pypi.org/simple/pmx-satumut/
2022-04-19T09:08:15,388 Given no hashes to check 1 links for project 'pmx-satumut': discarding no candidates
2022-04-19T09:08:15,420 Collecting pmx-satumut==2.0.4
2022-04-19T09:08:15,424   Created temporary directory: /tmp/pip-unpack-0g2_nuzn
2022-04-19T09:08:16,420   Downloading pmx-satumut-2.0.4.tar.gz (5.3 MB)
2022-04-19T09:08:23,727   Added pmx-satumut==2.0.4 from https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz#sha256=71edad3f94734fd3f27d12e9f3f5ccf66e2508c865ed8d18d22c02549b8639c6 to build tracker '/tmp/pip-req-tracker-wmgipvrm'
2022-04-19T09:08:23,729   Running setup.py (path:/tmp/pip-wheel-5nso63r6/pmx-satumut_1e430bead3454dee88064ad51c8f56e3/setup.py) egg_info for package pmx-satumut
2022-04-19T09:08:23,730   Created temporary directory: /tmp/pip-pip-egg-info-qyxkl0jz
2022-04-19T09:08:23,731   Preparing metadata (setup.py): started
2022-04-19T09:08:23,733   Running command python setup.py egg_info
2022-04-19T09:08:25,902   running egg_info
2022-04-19T09:08:25,908   creating /tmp/pip-pip-egg-info-qyxkl0jz/pmx_satumut.egg-info
2022-04-19T09:08:25,925   writing manifest file '/tmp/pip-pip-egg-info-qyxkl0jz/pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T09:08:26,443   writing manifest file '/tmp/pip-pip-egg-info-qyxkl0jz/pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T09:08:26,446   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing 'v2.0.4' to '2.0.4'
2022-04-19T09:08:26,447     warnings.warn(tmpl.format(**locals()))
2022-04-19T09:08:26,589   Preparing metadata (setup.py): finished with status 'done'
2022-04-19T09:08:26,600   Source in /tmp/pip-wheel-5nso63r6/pmx-satumut_1e430bead3454dee88064ad51c8f56e3 has version 2.0.4, which satisfies requirement pmx-satumut==2.0.4 from https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz#sha256=71edad3f94734fd3f27d12e9f3f5ccf66e2508c865ed8d18d22c02549b8639c6
2022-04-19T09:08:26,602   Removed pmx-satumut==2.0.4 from https://files.pythonhosted.org/packages/72/c5/b3f3a7ea73cde31878d5a8b39755f723fceacfe3d671ad77b69b79d60b0f/pmx-satumut-2.0.4.tar.gz#sha256=71edad3f94734fd3f27d12e9f3f5ccf66e2508c865ed8d18d22c02549b8639c6 from build tracker '/tmp/pip-req-tracker-wmgipvrm'
2022-04-19T09:08:26,616 Created temporary directory: /tmp/pip-unpack-npop9o82
2022-04-19T09:08:26,617 Building wheels for collected packages: pmx-satumut
2022-04-19T09:08:26,627   Created temporary directory: /tmp/pip-wheel-bccnllpx
2022-04-19T09:08:26,628   Building wheel for pmx-satumut (setup.py): started
2022-04-19T09:08:26,630   Destination directory: /tmp/pip-wheel-bccnllpx
2022-04-19T09:08:26,630   Running command python setup.py bdist_wheel
2022-04-19T09:08:28,676   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing 'v2.0.4' to '2.0.4'
2022-04-19T09:08:28,677     warnings.warn(tmpl.format(**locals()))
2022-04-19T09:08:28,774   running bdist_wheel
2022-04-19T09:08:28,783   running build
2022-04-19T09:08:28,784   running build_py
2022-04-19T09:08:28,798   creating build
2022-04-19T09:08:28,798   creating build/lib.linux-armv7l-3.7
2022-04-19T09:08:28,799   creating build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,802   copying src/pmx/model.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,808   copying src/pmx/__init__.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,812   copying src/pmx/mutdb.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,816   copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,820   copying src/pmx/atom.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,824   copying src/pmx/xtc.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,828   copying src/pmx/geometry.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,832   copying src/pmx/gmx.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,837   copying src/pmx/estimators.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,843   copying src/pmx/chain.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,849   copying src/pmx/ffparser.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,854   copying src/pmx/rotamer.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,858   copying src/pmx/alchemy.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,865   copying src/pmx/builder.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,869   copying src/pmx/library.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,879   copying src/pmx/jobscript.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,882   copying src/pmx/atomselection.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,886   copying src/pmx/options.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,890   copying src/pmx/analysis.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,894   copying src/pmx/utils.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,898   copying src/pmx/molecule.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,903   copying src/pmx/parser.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,906   copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,915   copying src/pmx/ndx.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,919   copying src/pmx/forcefield.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,928   copying src/pmx/_version.py -> build/lib.linux-armv7l-3.7/pmx
2022-04-19T09:08:28,930   running egg_info
2022-04-19T09:08:29,488   writing manifest file 'src/pmx_satumut.egg-info/SOURCES.txt'
2022-04-19T09:08:29,568   creating build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T09:08:29,569   copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T09:08:29,586   copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T09:08:30,464   copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T09:08:30,469   copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T09:08:30,485   copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T09:08:30,497   copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T09:08:30,509   copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-3.7/pmx/data
2022-04-19T09:08:30,518   creating build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T09:08:30,520   copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T09:08:30,525   copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T09:08:30,530   copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T09:08:30,534   copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T09:08:30,540   copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T09:08:30,545   copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T09:08:30,549   copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff
2022-04-19T09:08:30,553   creating build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,554   copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,558   copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,563   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,568   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,572   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,577   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,580   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,584   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,593   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,597   copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,602   copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,606   copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,610   copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,614   copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,619   copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,627   copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,631   copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,635   copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,639   copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,643   copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,647   copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,811   copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,881   copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,885   copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,889   copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,893   copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,899   copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,903   copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,907   copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,910   copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,914   copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,918   copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,921   copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,925   copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:08:30,929   creating build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,930   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,936   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,939   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,943   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,948   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,952   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,956   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,965   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,969   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,974   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:30,980   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,047   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,053   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,058   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,062   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,067   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,074   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,079   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,086   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,090   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,094   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,098   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,102   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,106   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,228   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,278   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,300   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,312   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,317   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,323   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,327   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,331   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,335   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,341   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,345   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,349   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,353   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,357   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,361   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,365   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,369   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:08:31,373   creating build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,374   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,378   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,382   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,387   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,390   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,394   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,407   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,411   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,416   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,422   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,483   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,489   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,493   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,497   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,500   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,506   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,511   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,517   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,522   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,526   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,529   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,533   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,537   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,651   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,711   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,732   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,747   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,753   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,758   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,762   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,767   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,771   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,778   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,782   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,786   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,790   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,794   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,798   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,802   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,806   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:08:31,809   creating build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,811   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,816   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,820   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,826   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,830   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,834   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,846   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,850   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,855   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,859   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,863   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,867   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,873   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,879   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,884   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,888   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,892   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,896   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:31,900   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,068   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,139   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,144   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,149   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,153   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,159   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,164   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,168   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,173   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,177   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,182   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,186   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,191   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:08:32,195   creating build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,197   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,202   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,207   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,212   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,217   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,221   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,229   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,234   copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,240   copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,247   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,251   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,254   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,258   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,262   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,267   copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,276   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,284   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,291   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,303   copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,307   copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,311   copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,315   copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,318   copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,322   copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,329   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,333   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,475   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,538   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,542   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,546   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,550   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,554   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,558   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,564   copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,568   copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,572   copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,576   copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,580   copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,585   copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,589   copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,593   copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:08:32,597   creating build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,599   copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,606   copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,616   copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,680   copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,768   copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,773   copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,777   copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,781   copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,785   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,789   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,794   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,798   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,803   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,807   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,870   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,875   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:32,879   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,015   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,088   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,107   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,119   copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,123   copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,127   copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,130   copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,135   copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,138   copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-3.7/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:08:33,142   creating build/lib.linux-armv7l-3.7/pmx/extensions
2022-04-19T09:08:33,142   creating build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T09:08:33,144   copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T09:08:33,149   copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T09:08:33,154   copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T09:08:33,159   copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T09:08:33,163   copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T09:08:33,167   copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T09:08:33,171   copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-3.7/pmx/extensions/pmx
2022-04-19T09:08:33,176   creating build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,177   copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,182   copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,189   copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,194   copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,199   copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,203   copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,207   copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,211   copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-3.7/pmx/extensions/xdr
2022-04-19T09:08:33,215   creating build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,216   copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,220   copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,225   copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,230   copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,235   copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,239   copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,247   copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,251   copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,256   copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,260   copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,265   copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,270   copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,274   copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,278   copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-3.7/pmx/scripts
2022-04-19T09:08:33,289   UPDATING build/lib.linux-armv7l-3.7/pmx/_version.py
2022-04-19T09:08:33,292   set build/lib.linux-armv7l-3.7/pmx/_version.py to 'v2.0.4'
2022-04-19T09:08:33,292   running build_ext
2022-04-19T09:08:33,304   creating build/temp.linux-armv7l-3.7
2022-04-19T09:08:33,304   creating build/temp.linux-armv7l-3.7/src
2022-04-19T09:08:33,305   creating build/temp.linux-armv7l-3.7/src/pmx
2022-04-19T09:08:33,307   creating build/temp.linux-armv7l-3.7/src/pmx/extensions
2022-04-19T09:08:33,308   creating build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx
2022-04-19T09:08:33,309   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.7m -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx/Energy.o
2022-04-19T09:08:35,517   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.7m -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx/Geometry.o
2022-04-19T09:08:36,171   src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2022-04-19T09:08:36,172   src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2022-04-19T09:08:36,172      int nx, ny, nz;
2022-04-19T09:08:36,173                  ^~
2022-04-19T09:08:36,174   src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2022-04-19T09:08:36,174   src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2022-04-19T09:08:36,175      int nx, ny, nz;
2022-04-19T09:08:36,175                  ^~
2022-04-19T09:08:39,986   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.7m -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx/init.o
2022-04-19T09:08:40,789   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.7m -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx/wrap_Geometry.o
2022-04-19T09:08:43,922   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-3.7/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-3.7/pmx/_pmx.cpython-37m-arm-linux-gnueabihf.so
2022-04-19T09:08:50,410   creating build/temp.linux-armv7l-3.7/src/pmx/extensions/xdr
2022-04-19T09:08:50,412   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.7m -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-3.7/src/pmx/extensions/xdr/xdrfile.o
2022-04-19T09:08:50,507   src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T09:08:50,508     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T09:08:50,683   In file included from src/pmx/extensions/xdr/xdrfile.c:60:
2022-04-19T09:08:50,684   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T09:08:50,684     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T09:08:50,700   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2022-04-19T09:08:50,701   src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T09:08:50,701        while (size >= num && num_of_bits < 32)
2022-04-19T09:08:50,702                    ^~
2022-04-19T09:08:50,703   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2022-04-19T09:08:50,704   src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,704        while (bytes[num_of_bytes] >= num)
2022-04-19T09:08:50,704                                   ^~
2022-04-19T09:08:50,707   src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2022-04-19T09:08:50,708   src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T09:08:50,708        if (num_of_bits >= num_of_bytes * 8)
2022-04-19T09:08:50,709                        ^~
2022-04-19T09:08:50,710   src/pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T09:08:50,710      for (i = 0; i < num_of_bytes; i++)
2022-04-19T09:08:50,710                    ^
2022-04-19T09:08:50,711   src/pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T09:08:50,712      for (i = 0; i < num_of_bytes-1; i++)
2022-04-19T09:08:50,712                    ^
2022-04-19T09:08:50,714   src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2022-04-19T09:08:50,714   src/pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,715      if (lastbits < num_of_bits)
2022-04-19T09:08:50,715                   ^
2022-04-19T09:08:50,719   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2022-04-19T09:08:50,720   src/pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,720     if(size3>xfp->buf1size)
2022-04-19T09:08:50,721             ^
2022-04-19T09:08:50,724   src/pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,725     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T09:08:50,725                      ^
2022-04-19T09:08:50,725   src/pmx/extensions/xdr/xdrfile.c:866:37: warning: operand of ?: changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T09:08:50,726     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T09:08:50,726                                        ^~~
2022-04-19T09:08:50,730   src/pmx/extensions/xdr/xdrfile.c:792:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-04-19T09:08:50,730     int smallnum, smaller, larger, i, is_smaller, run;
2022-04-19T09:08:50,730                            ^~~~~~
2022-04-19T09:08:50,731   src/pmx/extensions/xdr/xdrfile.c:789:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-04-19T09:08:50,731     int smallidx, minidx, maxidx;
2022-04-19T09:08:50,732                   ^~~~~~
2022-04-19T09:08:50,732   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2022-04-19T09:08:50,732   src/pmx/extensions/xdr/xdrfile.c:1010:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,733     if(size3>xfp->buf1size)
2022-04-19T09:08:50,733             ^
2022-04-19T09:08:50,742   src/pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T09:08:50,742     while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2022-04-19T09:08:50,743                     ^
2022-04-19T09:08:50,743   src/pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,743     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T09:08:50,744                      ^
2022-04-19T09:08:50,744   src/pmx/extensions/xdr/xdrfile.c:1139:37: warning: operand of ?: changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T09:08:50,744     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T09:08:50,745                                        ^~~
2022-04-19T09:08:50,749   src/pmx/extensions/xdr/xdrfile.c:1271:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T09:08:50,749     if(tmp==(unsigned int)buf2[0])
2022-04-19T09:08:50,750           ^~
2022-04-19T09:08:50,750   src/pmx/extensions/xdr/xdrfile.c:999:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-04-19T09:08:50,751     int errval=1;
2022-04-19T09:08:50,751         ^~~~~~
2022-04-19T09:08:50,752   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2022-04-19T09:08:50,752   src/pmx/extensions/xdr/xdrfile.c:1311:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,753     if(size3>xfp->buf1size)
2022-04-19T09:08:50,753             ^
2022-04-19T09:08:50,756   src/pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,756     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T09:08:50,756                      ^
2022-04-19T09:08:50,757   src/pmx/extensions/xdr/xdrfile.c:1366:37: warning: operand of ?: changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T09:08:50,757     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T09:08:50,758                                        ^~~
2022-04-19T09:08:50,762   src/pmx/extensions/xdr/xdrfile.c:1288:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-04-19T09:08:50,763     int smallnum, smaller, larger, i, is_smaller, run;
2022-04-19T09:08:50,763                            ^~~~~~
2022-04-19T09:08:50,764   src/pmx/extensions/xdr/xdrfile.c:1285:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-04-19T09:08:50,764     int smallidx, minidx, maxidx;
2022-04-19T09:08:50,764                   ^~~~~~
2022-04-19T09:08:50,765   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2022-04-19T09:08:50,765   src/pmx/extensions/xdr/xdrfile.c:1502:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,765     if(size3>xfp->buf1size) {
2022-04-19T09:08:50,766             ^
2022-04-19T09:08:50,779   src/pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T09:08:50,779     while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2022-04-19T09:08:50,779                     ^
2022-04-19T09:08:50,780   src/pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-04-19T09:08:50,780     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T09:08:50,780                      ^
2022-04-19T09:08:50,781   src/pmx/extensions/xdr/xdrfile.c:1622:37: warning: operand of ?: changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2022-04-19T09:08:50,781     maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-04-19T09:08:50,782                                        ^~~
2022-04-19T09:08:50,787   src/pmx/extensions/xdr/xdrfile.c:1732:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-04-19T09:08:50,787     if(tmp==(unsigned int)buf2[0])
2022-04-19T09:08:50,787           ^~
2022-04-19T09:08:50,788   src/pmx/extensions/xdr/xdrfile.c:1492:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-04-19T09:08:50,788     int errval=1;
2022-04-19T09:08:50,788         ^~~~~~
2022-04-19T09:08:55,664   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.7m -c src/pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-3.7/src/pmx/extensions/xdr/xdrfile_trr.o
2022-04-19T09:08:55,758   src/pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T09:08:55,759     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T09:08:55,839   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:41:
2022-04-19T09:08:55,839   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T09:08:55,839     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T09:08:55,842   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:42:
2022-04-19T09:08:55,843   src/pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T09:08:55,843     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T09:08:55,845   src/pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2022-04-19T09:08:55,846   src/pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-19T09:08:55,846            if (slen != strlen(version)+1)
2022-04-19T09:08:55,846                     ^~
2022-04-19T09:08:55,847   src/pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-19T09:08:55,847            if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2022-04-19T09:08:55,848                                                 ^~
2022-04-19T09:08:57,110   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.7m -c src/pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-3.7/src/pmx/extensions/xdr/xdrfile_xtc.o
2022-04-19T09:08:57,270   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:31:
2022-04-19T09:08:57,271   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T09:08:57,271     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T09:08:57,273   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:32:
2022-04-19T09:08:57,274   src/pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2022-04-19T09:08:57,274     /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-

2022-04-19T09:08:57,276   src/pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2022-04-19T09:08:57,276   src/pmx/extensions/xdr/xdrfile_xtc.c:66:8: warning: unused variable ‘j’ [-Wunused-variable]
2022-04-19T09:08:57,277     int i,j,result;
2022-04-19T09:08:57,277           ^
2022-04-19T09:08:57,278   src/pmx/extensions/xdr/xdrfile_xtc.c:66:6: warning: unused variable ‘i’ [-Wunused-variable]
2022-04-19T09:08:57,278     int i,j,result;
2022-04-19T09:08:57,279         ^
2022-04-19T09:08:57,539   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-3.7/src/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-3.7/src/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-3.7/src/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib -lm -o build/lib.linux-armv7l-3.7/pmx/_xdrio.cpython-37m-arm-linux-gnueabihf.so
2022-04-19T09:09:03,204   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-04-19T09:09:03,204     setuptools.SetuptoolsDeprecationWarning,
2022-04-19T09:09:03,209   running install
2022-04-19T09:09:03,272   running install_lib
2022-04-19T09:09:03,279   creating build/bdist.linux-armv7l
2022-04-19T09:09:03,280   creating build/bdist.linux-armv7l/wheel
2022-04-19T09:09:03,284   creating build/bdist.linux-armv7l/wheel/pmx
2022-04-19T09:09:03,287   creating build/bdist.linux-armv7l/wheel/pmx/data
2022-04-19T09:09:04,165   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff
2022-04-19T09:09:04,169   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2022-04-19T09:09:04,508   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2022-04-19T09:09:05,064   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2022-04-19T09:09:05,508   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2022-04-19T09:09:05,850   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2022-04-19T09:09:06,173   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2022-04-19T09:09:06,659   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2022-04-19T09:09:06,840   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2022-04-19T09:09:06,842   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2022-04-19T09:09:06,877   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2022-04-19T09:09:06,908   running install_egg_info
2022-04-19T09:09:06,925   Copying src/pmx_satumut.egg-info to build/bdist.linux-armv7l/wheel/pmx_satumut-2.0.4-py3.7.egg-info
2022-04-19T09:09:06,955   running install_scripts
2022-04-19T09:09:19,845   Building wheel for pmx-satumut (setup.py): finished with status 'done'
2022-04-19T09:09:20,025   Created wheel for pmx-satumut: filename=pmx_satumut-2.0.4-cp37-cp37m-linux_armv7l.whl size=5825155 sha256=9ad74a1e462b31238fc03094df0f7d66831bfc0e11319138079c16bfa7ab8792
2022-04-19T09:09:20,027   Stored in directory: /tmp/pip-ephem-wheel-cache-p3zcjs5x/wheels/93/8a/14/fa7e95d9a32cc42bbe08038ec979410199be1ad3b6a88e64f7
2022-04-19T09:09:20,080 Successfully built pmx-satumut
2022-04-19T09:09:20,559 Removed build tracker: '/tmp/pip-req-tracker-wmgipvrm'