2022-04-19T22:00:06,871 Created temporary directory: /tmp/pip-ephem-wheel-cache-azj0umhc
2022-04-19T22:00:06,877 Created temporary directory: /tmp/pip-req-tracker-79m2qnq0
2022-04-19T22:00:06,878 Initialized build tracking at /tmp/pip-req-tracker-79m2qnq0
2022-04-19T22:00:06,878 Created build tracker: /tmp/pip-req-tracker-79m2qnq0
2022-04-19T22:00:06,879 Entered build tracker: /tmp/pip-req-tracker-79m2qnq0
2022-04-19T22:00:06,880 Created temporary directory: /tmp/pip-wheel-9caz82rp
2022-04-19T22:00:06,942 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-19T22:00:06,950 2 location(s) to search for versions of depht:
2022-04-19T22:00:06,950 * https://pypi.org/simple/depht/
2022-04-19T22:00:06,950 * https://www.piwheels.org/simple/depht/
2022-04-19T22:00:06,952 Fetching project page and analyzing links: https://pypi.org/simple/depht/
2022-04-19T22:00:06,953 Getting page https://pypi.org/simple/depht/
2022-04-19T22:00:06,956 Found index url https://pypi.org/simple
2022-04-19T22:00:07,070   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/19/72/fe63d35459233b43e179b3579a137c84b3586a1ec3f6674ce1340fadc2fc/depht-1.0.0-py3-none-any.whl#sha256=a375093b069cfcfc1a0d8cf6e37c3aecbc4b8cd717397b251190bf605d06a0a4 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,072   Found link https://files.pythonhosted.org/packages/91/61/e0c3c1e725b4a281c087467594e908e0a46e1a91ec288ac09b22c4a4ac17/depht-1.0.0.tar.gz#sha256=73eb7bd7d32d52ae5e0bdb62d8ce17cf59d68d633805075a876d6f3cf85da123 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.0
2022-04-19T22:00:07,073   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/3a/8d/e2d2dea7750112dc8b17f17828c6700755e580cfbfadbb6ca1f29cfba3b1/depht-1.0.1-py3-none-any.whl#sha256=93b59e25c7de78b41fa21c3af9a3348c5c69256786790c8b15937b9206cd8e6c (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,075   Found link https://files.pythonhosted.org/packages/39/4b/eda220e1c8d0f7fa2733a9ca9b4918e5ab3e61c8eae17fac32f8719f9e1d/depht-1.0.1.tar.gz#sha256=c623361560ccb615d9ec68467e99bac0e97dca43754d8e86a904ad940e6404a5 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.1
2022-04-19T22:00:07,075   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/32/5e/b4a44d00807cb6ace2704a7bcb063535c0d55fd66876c9f0dfb969311c1f/depht-1.0.2-py3-none-any.whl#sha256=9aab1c0ae369d511c3f89a6a4491a7455ce30950f9406a53be0ffa305e31e6cc (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,077   Found link https://files.pythonhosted.org/packages/d9/e7/1db918963510d931b43704f804783319af47f7c82f5d9a2e53f6936bd67a/depht-1.0.2.tar.gz#sha256=ff8af7ddde50765d86c95835482160c536639f78ea0d6750c5a7bd08e1894654 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.0.2
2022-04-19T22:00:07,077   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/8b/99/c44ff60e08d7f5708286fb26fc216d2f7ca4ff46fd19b9aa76bbc031a4ac/depht-1.1.1-py3-none-any.whl#sha256=a61b455fc299a29ecb09827e0433e93dcdbd1ca6ad616f0e4df8c456ba29841e (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,079   Found link https://files.pythonhosted.org/packages/cc/16/89e0098b689b09ff80d73950844760981a915f23f3cdb60e33b27ac96ad2/depht-1.1.1.tar.gz#sha256=e9636aee4923786ce7c0e086a7a619b32592ba06361a62ead0c00d472c16a948 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.1
2022-04-19T22:00:07,079   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/cc/b2/c5f4eb7fdc8eb091a14a01cba0e3a2a5756757cc34aa7b92289d00df78ad/depht-1.1.2-py3-none-any.whl#sha256=f0fc36a71aca7fb01e8fd0a4e814c7ac36ee4b4e6807a777af7ab14a3503e8c6 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,081   Found link https://files.pythonhosted.org/packages/8d/66/3be8e1fd8a0d732664b4afa5d2cdcaaacfd8074aa933df37ee16bad8cb71/depht-1.1.2.tar.gz#sha256=f8a58e76e363ade42b03b82ede2609eef02c6f4921850faf5f5ac724838a9aaf (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.2
2022-04-19T22:00:07,082   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/60/d5/af28d08aaa5b708043ae39ea37550e1c81812cbc01034feedd74bbcadbfb/depht-1.1.3-py3-none-any.whl#sha256=4f935a96bbee084e22f1d1378b31bf2b605b3dbbd6f8f9dc81dd7d5c628eb173 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,083   Found link https://files.pythonhosted.org/packages/95/40/14650fc8614e79ac3b7d4e2aa431580da9f9524135d130c9d86fe6a2e9ef/depht-1.1.3.tar.gz#sha256=7b691b15f2fbee5fc98cd1494ccdaa3481b7a3300fd7cdff201da59442b92982 (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.3
2022-04-19T22:00:07,084   Skipping link: No binaries permitted for depht: https://files.pythonhosted.org/packages/5b/19/3421ba8ca682a4d1525bde02859ff605d6c91b3a8f75cb0215255a8d997f/depht-1.1.4-py3-none-any.whl#sha256=c5c184c5baaa53d93084afec142d2253fb750e8f42709b500898f59ca4e60780 (from https://pypi.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,085   Found link https://files.pythonhosted.org/packages/ee/c8/fd81df946cb2c056b2a1486e830a93b0aed594b0eb5b8799dc8a24b0dac2/depht-1.1.4.tar.gz#sha256=c7ccdd3bf666145d41d1802acd8f7d893a5a06104fe99e0d23e156f26aec363c (from https://pypi.org/simple/depht/) (requires-python:>=3.6), version: 1.1.4
2022-04-19T22:00:07,086 Fetching project page and analyzing links: https://www.piwheels.org/simple/depht/
2022-04-19T22:00:07,087 Getting page https://www.piwheels.org/simple/depht/
2022-04-19T22:00:07,089 Found index url https://www.piwheels.org/simple
2022-04-19T22:00:07,293   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.3-py3-none-any.whl#sha256=83a6b6a0a5348682ddc18049a490aeef6eb8a9afb32f7bb4d9f283d3d603ad88 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,294   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.2-py3-none-any.whl#sha256=3483519a46f25e042f5cf9af6684ffabce759671294bc14174cfa951237458ec (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,294   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.1.1-py3-none-any.whl#sha256=7a317fc77958224a59cf68ead901529121d9d2b51e9857531a1804cf02652711 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,295   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.2-py3-none-any.whl#sha256=e40087e26a118911beeba973a589afb546a8905bce3927348015d3b5ecb30fc4 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,295   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.1-py3-none-any.whl#sha256=6ce913764fa0fbd66aca333bfaee4b8ba291318ddf7d12eb333ee775bb6399cb (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,296   Skipping link: No binaries permitted for depht: https://www.piwheels.org/simple/depht/depht-1.0.0-py3-none-any.whl#sha256=295b3534c03d4d33691ed03b9aaa1769cce7c3dfd049472609861851d5147697 (from https://www.piwheels.org/simple/depht/) (requires-python:>=3.6)
2022-04-19T22:00:07,296 Skipping link: not a file: https://www.piwheels.org/simple/depht/
2022-04-19T22:00:07,297 Skipping link: not a file: https://pypi.org/simple/depht/
2022-04-19T22:00:07,332 Given no hashes to check 1 links for project 'depht': discarding no candidates
2022-04-19T22:00:07,364 Collecting depht==1.1.4
2022-04-19T22:00:07,368   Created temporary directory: /tmp/pip-unpack-gqbueip7
2022-04-19T22:00:07,668   Downloading depht-1.1.4.tar.gz (100 kB)
2022-04-19T22:00:08,532   Added depht==1.1.4 from https://files.pythonhosted.org/packages/ee/c8/fd81df946cb2c056b2a1486e830a93b0aed594b0eb5b8799dc8a24b0dac2/depht-1.1.4.tar.gz#sha256=c7ccdd3bf666145d41d1802acd8f7d893a5a06104fe99e0d23e156f26aec363c to build tracker '/tmp/pip-req-tracker-79m2qnq0'
2022-04-19T22:00:08,541   Created temporary directory: /tmp/pip-build-env-mmdg3cmj
2022-04-19T22:00:08,555   Created temporary directory: /tmp/pip-standalone-pip-puq82n49
2022-04-19T22:00:11,091   Installing build dependencies: started
2022-04-19T22:00:11,093   Running command pip subprocess to install build dependencies
2022-04-19T22:00:21,108   Using pip 22.0.4 from /tmp/pip-standalone-pip-puq82n49/__env_pip__.zip/pip (python 3.7)
2022-04-19T22:00:22,511   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-19T22:00:26,702   Collecting setuptools
2022-04-19T22:00:26,965     Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.1.0-py3-none-any.whl (1.1 MB)
2022-04-19T22:00:27,618   Collecting wheel
2022-04-19T22:00:27,652     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-04-19T22:00:32,523   Installing collected packages: wheel, setuptools
2022-04-19T22:00:32,804     Creating /tmp/pip-build-env-mmdg3cmj/overlay/bin
2022-04-19T22:00:32,809     changing mode of /tmp/pip-build-env-mmdg3cmj/overlay/bin/wheel to 755
2022-04-19T22:00:37,135   Successfully installed setuptools-62.1.0 wheel-0.37.1
2022-04-19T22:00:37,768   Installing build dependencies: finished with status 'done'
2022-04-19T22:00:37,794   Getting requirements to build wheel: started
2022-04-19T22:00:37,796   Running command Getting requirements to build wheel
2022-04-19T22:00:39,747   running egg_info
2022-04-19T22:00:39,814   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2022-04-19T22:00:39,945   Getting requirements to build wheel: finished with status 'done'
2022-04-19T22:00:39,969   Created temporary directory: /tmp/pip-modern-metadata-4igi37qh
2022-04-19T22:00:39,975   Preparing metadata (pyproject.toml): started
2022-04-19T22:00:39,978   Running command Preparing metadata (pyproject.toml)
2022-04-19T22:00:41,769   running dist_info
2022-04-19T22:00:41,800   creating /tmp/pip-modern-metadata-4igi37qh/depht.egg-info
2022-04-19T22:00:41,816   writing manifest file '/tmp/pip-modern-metadata-4igi37qh/depht.egg-info/SOURCES.txt'
2022-04-19T22:00:41,856   writing manifest file '/tmp/pip-modern-metadata-4igi37qh/depht.egg-info/SOURCES.txt'
2022-04-19T22:00:42,163   Preparing metadata (pyproject.toml): finished with status 'done'
2022-04-19T22:00:42,180   Source in /tmp/pip-wheel-9caz82rp/depht_9d345e4c2b3a4c8888d0ac55d0b26fe5 has version 1.1.4, which satisfies requirement depht==1.1.4 from https://files.pythonhosted.org/packages/ee/c8/fd81df946cb2c056b2a1486e830a93b0aed594b0eb5b8799dc8a24b0dac2/depht-1.1.4.tar.gz#sha256=c7ccdd3bf666145d41d1802acd8f7d893a5a06104fe99e0d23e156f26aec363c
2022-04-19T22:00:42,183   Removed depht==1.1.4 from https://files.pythonhosted.org/packages/ee/c8/fd81df946cb2c056b2a1486e830a93b0aed594b0eb5b8799dc8a24b0dac2/depht-1.1.4.tar.gz#sha256=c7ccdd3bf666145d41d1802acd8f7d893a5a06104fe99e0d23e156f26aec363c from build tracker '/tmp/pip-req-tracker-79m2qnq0'
2022-04-19T22:00:42,199 Created temporary directory: /tmp/pip-unpack-zx_upgid
2022-04-19T22:00:42,200 Building wheels for collected packages: depht
2022-04-19T22:00:42,210   Created temporary directory: /tmp/pip-wheel-udldtf84
2022-04-19T22:00:42,211   Destination directory: /tmp/pip-wheel-udldtf84
2022-04-19T22:00:42,215   Building wheel for depht (pyproject.toml): started
2022-04-19T22:00:42,218   Running command Building wheel for depht (pyproject.toml)
2022-04-19T22:00:44,062   running bdist_wheel
2022-04-19T22:00:44,480   running build
2022-04-19T22:00:44,481   running build_py
2022-04-19T22:00:44,488   creating build
2022-04-19T22:00:44,489   creating build/lib
2022-04-19T22:00:44,490   creating build/lib/depht_train
2022-04-19T22:00:44,492   copying src/depht_train/__main__.py -> build/lib/depht_train
2022-04-19T22:00:44,496   copying src/depht_train/run.py -> build/lib/depht_train
2022-04-19T22:00:44,499   copying src/depht_train/data.py -> build/lib/depht_train
2022-04-19T22:00:44,502   copying src/depht_train/__init__.py -> build/lib/depht_train
2022-04-19T22:00:44,507   creating build/lib/depht
2022-04-19T22:00:44,508   copying src/depht/__main__.py -> build/lib/depht
2022-04-19T22:00:44,513   copying src/depht/data.py -> build/lib/depht
2022-04-19T22:00:44,516   copying src/depht/__init__.py -> build/lib/depht
2022-04-19T22:00:44,520   creating build/lib/depht_train/classes
2022-04-19T22:00:44,521   copying src/depht_train/classes/database.py -> build/lib/depht_train/classes
2022-04-19T22:00:44,525   copying src/depht_train/classes/__init__.py -> build/lib/depht_train/classes
2022-04-19T22:00:44,528   copying src/depht_train/classes/kfold.py -> build/lib/depht_train/classes
2022-04-19T22:00:44,533   creating build/lib/depht_train/pipelines
2022-04-19T22:00:44,534   copying src/depht_train/pipelines/build_HMM_db.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,537   copying src/depht_train/pipelines/benchmark_output.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,542   copying src/depht_train/pipelines/build_reference_db.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,545   copying src/depht_train/pipelines/pull_sequences.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,548   copying src/depht_train/pipelines/phamerate.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,551   copying src/depht_train/pipelines/create_model.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,555   copying src/depht_train/pipelines/recut_fasta.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,558   copying src/depht_train/pipelines/curate_gene_clusters.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,562   copying src/depht_train/pipelines/plot_gene_density.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,565   copying src/depht_train/pipelines/__init__.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,568   copying src/depht_train/pipelines/index_sequences.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,572   copying src/depht_train/pipelines/screen_conserved_phams.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,575   copying src/depht_train/pipelines/train_model.py -> build/lib/depht_train/pipelines
2022-04-19T22:00:44,581   creating build/lib/depht_train/functions
2022-04-19T22:00:44,582   copying src/depht_train/functions/entrez.py -> build/lib/depht_train/functions
2022-04-19T22:00:44,586   copying src/depht_train/functions/clustalo.py -> build/lib/depht_train/functions
2022-04-19T22:00:44,589   copying src/depht_train/functions/fileio.py -> build/lib/depht_train/functions
2022-04-19T22:00:44,592   copying src/depht_train/functions/blastdb.py -> build/lib/depht_train/functions
2022-04-19T22:00:44,595   copying src/depht_train/functions/hhsuitedb.py -> build/lib/depht_train/functions
2022-04-19T22:00:44,599   copying src/depht_train/functions/__init__.py -> build/lib/depht_train/functions
2022-04-19T22:00:44,601   copying src/depht_train/functions/train_classifier.py -> build/lib/depht_train/functions
2022-04-19T22:00:44,604   copying src/depht_train/functions/config_handling.py -> build/lib/depht_train/functions
2022-04-19T22:00:44,609   creating build/lib/depht/classes
2022-04-19T22:00:44,610   copying src/depht/classes/prophage_classifier.py -> build/lib/depht/classes
2022-04-19T22:00:44,614   copying src/depht/classes/hhresult.py -> build/lib/depht/classes
2022-04-19T22:00:44,618   copying src/depht/classes/prophage.py -> build/lib/depht/classes
2022-04-19T22:00:44,622   copying src/depht/classes/contig.py -> build/lib/depht/classes
2022-04-19T22:00:44,625   copying src/depht/classes/file_translator.py -> build/lib/depht/classes
2022-04-19T22:00:44,629   copying src/depht/classes/__init__.py -> build/lib/depht/classes
2022-04-19T22:00:44,631   copying src/depht/classes/progress.py -> build/lib/depht/classes
2022-04-19T22:00:44,637   creating build/lib/depht/functions
2022-04-19T22:00:44,638   copying src/depht/functions/find_homologs.py -> build/lib/depht/functions
2022-04-19T22:00:44,642   copying src/depht/functions/prophage_prediction.py -> build/lib/depht/functions
2022-04-19T22:00:44,646   copying src/depht/functions/annotation.py -> build/lib/depht/functions
2022-04-19T22:00:44,649   copying src/depht/functions/sniff_format.py -> build/lib/depht/functions
2022-04-19T22:00:44,652   copying src/depht/functions/blastn.py -> build/lib/depht/functions
2022-04-19T22:00:44,655   copying src/depht/functions/att.py -> build/lib/depht/functions
2022-04-19T22:00:44,660   copying src/depht/functions/multiprocess.py -> build/lib/depht/functions
2022-04-19T22:00:44,663   copying src/depht/functions/subprocess.py -> build/lib/depht/functions
2022-04-19T22:00:44,667   copying src/depht/functions/mmseqs.py -> build/lib/depht/functions
2022-04-19T22:00:44,671   copying src/depht/functions/statistics.py -> build/lib/depht/functions
2022-04-19T22:00:44,674   copying src/depht/functions/sliding_window.py -> build/lib/depht/functions
2022-04-19T22:00:44,677   copying src/depht/functions/__init__.py -> build/lib/depht/functions
2022-04-19T22:00:44,680   copying src/depht/functions/visualization.py -> build/lib/depht/functions
2022-04-19T22:00:44,683   copying src/depht/functions/fasta.py -> build/lib/depht/functions
2022-04-19T22:00:44,710   running install
2022-04-19T22:00:44,773   running install_lib
2022-04-19T22:00:44,779   creating build/bdist.linux-armv7l
2022-04-19T22:00:44,780   creating build/bdist.linux-armv7l/wheel
2022-04-19T22:00:44,783   creating build/bdist.linux-armv7l/wheel/depht_train
2022-04-19T22:00:44,789   creating build/bdist.linux-armv7l/wheel/depht_train/classes
2022-04-19T22:00:44,808   creating build/bdist.linux-armv7l/wheel/depht_train/pipelines
2022-04-19T22:00:44,861   creating build/bdist.linux-armv7l/wheel/depht_train/functions
2022-04-19T22:00:44,890   creating build/bdist.linux-armv7l/wheel/depht
2022-04-19T22:00:44,897   creating build/bdist.linux-armv7l/wheel/depht/classes
2022-04-19T22:00:44,930   creating build/bdist.linux-armv7l/wheel/depht/functions
2022-04-19T22:00:44,980   running install_egg_info
2022-04-19T22:00:45,018   running egg_info
2022-04-19T22:00:45,065   writing manifest file 'src/depht.egg-info/SOURCES.txt'
2022-04-19T22:00:45,067   Copying src/depht.egg-info to build/bdist.linux-armv7l/wheel/depht-1.1.4-py3.7.egg-info
2022-04-19T22:00:45,091   running install_scripts
2022-04-19T22:00:45,708   Building wheel for depht (pyproject.toml): finished with status 'done'
2022-04-19T22:00:45,726   Created wheel for depht: filename=depht-1.1.4-py3-none-any.whl size=111318 sha256=1f96e29acfa9f4391253289afb40f72a20f110515574983fb9779f0b8a691c2b
2022-04-19T22:00:45,728   Stored in directory: /tmp/pip-ephem-wheel-cache-azj0umhc/wheels/07/7c/21/217070a301df5b2b138b45466366158589fa15146dab91c92b
2022-04-19T22:00:45,762 Successfully built depht
2022-04-19T22:00:45,778 Removed build tracker: '/tmp/pip-req-tracker-79m2qnq0'