2022-04-26T05:51:50,335 Created temporary directory: /tmp/pip-ephem-wheel-cache-yephhsxp
2022-04-26T05:51:50,340 Created temporary directory: /tmp/pip-req-tracker-arh6eviu
2022-04-26T05:51:50,341 Initialized build tracking at /tmp/pip-req-tracker-arh6eviu
2022-04-26T05:51:50,341 Created build tracker: /tmp/pip-req-tracker-arh6eviu
2022-04-26T05:51:50,342 Entered build tracker: /tmp/pip-req-tracker-arh6eviu
2022-04-26T05:51:50,343 Created temporary directory: /tmp/pip-wheel-gt6rhl0q
2022-04-26T05:51:50,410 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-04-26T05:51:50,418 2 location(s) to search for versions of pyslow5:
2022-04-26T05:51:50,418 * https://pypi.org/simple/pyslow5/
2022-04-26T05:51:50,418 * https://www.piwheels.org/simple/pyslow5/
2022-04-26T05:51:50,420 Fetching project page and analyzing links: https://pypi.org/simple/pyslow5/
2022-04-26T05:51:50,421 Getting page https://pypi.org/simple/pyslow5/
2022-04-26T05:51:50,424 Found index url https://pypi.org/simple
2022-04-26T05:51:50,538   Found link https://files.pythonhosted.org/packages/23/0d/38c8cfedd09e7f753347b6ecd717a101c7236daf2ecccb34d44cedc6f125/pyslow5-0.2.0a1.tar.gz#sha256=a72b744ec652ba25eee5060748f8df8a5dc49eee126f48b7682f8d11d6cb434b (from https://pypi.org/simple/pyslow5/), version: 0.2.0a1
2022-04-26T05:51:50,539   Found link https://files.pythonhosted.org/packages/41/8b/eed2c94d79c0af2a69cddfcbc774697dbac35e0a053f7bfd452a629aca4a/pyslow5-0.3.0a1.tar.gz#sha256=5b9a25b33d15d6fba531f82deec6244699baedc2dee29dcd848cecc1555e4e60 (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0a1
2022-04-26T05:51:50,541   Found link https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz#sha256=6f902d9ca38c290253a008a96ff023dcdfcd8d7348b7bde8a0d4ee85eed5ba2b (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0
2022-04-26T05:51:50,542   Found link https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz#sha256=078e6964af086dc8d2dcdd458a5b3db9cdc27c026c66d37af2e3fda01e9a566e (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.4.0
2022-04-26T05:51:50,543   Found link https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz#sha256=0cda66777d7f8800f11730b03f3bee89be38b05c01c9fd85f57e6d001f7f50e9 (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a1
2022-04-26T05:51:50,544 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyslow5/
2022-04-26T05:51:50,545 Getting page https://www.piwheels.org/simple/pyslow5/
2022-04-26T05:51:50,547 Found index url https://www.piwheels.org/simple
2022-04-26T05:51:50,786   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp37-cp37m-linux_armv7l.whl#sha256=f054a0e073baa90d831b700f5e5e42fd45011e3ae0a4684dcfba0b1f8e86aa20 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,786   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp37-cp37m-linux_armv6l.whl#sha256=f054a0e073baa90d831b700f5e5e42fd45011e3ae0a4684dcfba0b1f8e86aa20 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,787   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp35-cp35m-linux_armv7l.whl#sha256=251dfce53fc1b5e78ebdb8c06be03afb57eb1353e4ef19211830c7f04709ea2f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,787   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp35-cp35m-linux_armv6l.whl#sha256=251dfce53fc1b5e78ebdb8c06be03afb57eb1353e4ef19211830c7f04709ea2f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,788   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp39-cp39-linux_armv7l.whl#sha256=5bf10bb2b3000cd24a1786f11a7de66dbb4636590f5e29ec5aca21a84fa4d02a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,788   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp39-cp39-linux_armv6l.whl#sha256=5bf10bb2b3000cd24a1786f11a7de66dbb4636590f5e29ec5aca21a84fa4d02a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,789   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp37-cp37m-linux_armv7l.whl#sha256=9d380221488f9191de4d12d2478ff8ec8826840a26958778c7ccf312fba5beca (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,789   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp37-cp37m-linux_armv6l.whl#sha256=9d380221488f9191de4d12d2478ff8ec8826840a26958778c7ccf312fba5beca (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,790   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp35-cp35m-linux_armv7l.whl#sha256=a6ef398f53044a2e346bc30d9f507aaf79303d8153daac586149dc681fbf322c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,790   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp35-cp35m-linux_armv6l.whl#sha256=a6ef398f53044a2e346bc30d9f507aaf79303d8153daac586149dc681fbf322c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,791   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,791   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,792   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,792   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,793   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv7l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,793   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv6l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,794   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv7l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,794   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv6l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,796   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv7l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,797   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv6l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,798   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv7l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,798   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv6l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,799   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,799   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,800   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,800   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,801   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,801   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-04-26T05:51:50,802 Skipping link: not a file: https://www.piwheels.org/simple/pyslow5/
2022-04-26T05:51:50,802 Skipping link: not a file: https://pypi.org/simple/pyslow5/
2022-04-26T05:51:50,848 Given no hashes to check 1 links for project 'pyslow5': discarding no candidates
2022-04-26T05:51:50,890 Collecting pyslow5==0.5.0a1
2022-04-26T05:51:50,894   Created temporary directory: /tmp/pip-unpack-0z7pzs09
2022-04-26T05:51:50,986   Downloading pyslow5-0.5.0a1.tar.gz (356 kB)
2022-04-26T05:51:51,668   Added pyslow5==0.5.0a1 from https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz#sha256=0cda66777d7f8800f11730b03f3bee89be38b05c01c9fd85f57e6d001f7f50e9 to build tracker '/tmp/pip-req-tracker-arh6eviu'
2022-04-26T05:51:51,670   Running setup.py (path:/tmp/pip-wheel-gt6rhl0q/pyslow5_67c24a74e16240f4878bc564ef941076/setup.py) egg_info for package pyslow5
2022-04-26T05:51:51,671   Created temporary directory: /tmp/pip-pip-egg-info-moc6f53v
2022-04-26T05:51:51,672   Preparing metadata (setup.py): started
2022-04-26T05:51:51,673   Running command python setup.py egg_info
2022-04-26T05:51:54,714   running egg_info
2022-04-26T05:51:54,718   creating /tmp/pip-pip-egg-info-moc6f53v/pyslow5.egg-info
2022-04-26T05:51:54,733   writing manifest file '/tmp/pip-pip-egg-info-moc6f53v/pyslow5.egg-info/SOURCES.txt'
2022-04-26T05:51:54,784   writing manifest file '/tmp/pip-pip-egg-info-moc6f53v/pyslow5.egg-info/SOURCES.txt'
2022-04-26T05:51:54,972   Preparing metadata (setup.py): finished with status 'done'
2022-04-26T05:51:54,986   Source in /tmp/pip-wheel-gt6rhl0q/pyslow5_67c24a74e16240f4878bc564ef941076 has version 0.5.0a1, which satisfies requirement pyslow5==0.5.0a1 from https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz#sha256=0cda66777d7f8800f11730b03f3bee89be38b05c01c9fd85f57e6d001f7f50e9
2022-04-26T05:51:54,988   Removed pyslow5==0.5.0a1 from https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz#sha256=0cda66777d7f8800f11730b03f3bee89be38b05c01c9fd85f57e6d001f7f50e9 from build tracker '/tmp/pip-req-tracker-arh6eviu'
2022-04-26T05:51:55,003 Created temporary directory: /tmp/pip-unpack-62j51osl
2022-04-26T05:51:55,005 Building wheels for collected packages: pyslow5
2022-04-26T05:51:55,013   Created temporary directory: /tmp/pip-wheel-s9v8knc0
2022-04-26T05:51:55,014   Building wheel for pyslow5 (setup.py): started
2022-04-26T05:51:55,016   Destination directory: /tmp/pip-wheel-s9v8knc0
2022-04-26T05:51:55,016   Running command python setup.py bdist_wheel
2022-04-26T05:51:57,953   running bdist_wheel
2022-04-26T05:51:57,962   running build
2022-04-26T05:51:57,962   running build_ext
2022-04-26T05:52:07,772   creating build
2022-04-26T05:52:07,773   creating build/temp.linux-armv7l-3.9
2022-04-26T05:52:07,773   creating build/temp.linux-armv7l-3.9/python
2022-04-26T05:52:07,775   creating build/temp.linux-armv7l-3.9/src
2022-04-26T05:52:07,777   creating build/temp.linux-armv7l-3.9/thirdparty
2022-04-26T05:52:07,777   creating build/temp.linux-armv7l-3.9/thirdparty/streamvbyte
2022-04-26T05:52:07,778   creating build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src
2022-04-26T05:52:07,780   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/pyslow5.c -o build/temp.linux-armv7l-3.9/python/pyslow5.o -g -Wall -O2 -std=c99
2022-04-26T05:52:08,714   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-04-26T05:52:08,715                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-04-26T05:52:08,715                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-04-26T05:52:08,715                    from python/pyslow5.c:686:
2022-04-26T05:52:08,716   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-04-26T05:52:08,716      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-04-26T05:52:08,716         |  ^~~~~~~
2022-04-26T05:53:17,544   python/pyslow5.c: In function ‘__pyx_pw_7pyslow5_4Open_59write_record’:
2022-04-26T05:53:17,602   python/pyslow5.c:35883:38: warning: ‘__pyx_v_ret’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-04-26T05:53:17,603   35883 |       __pyx_t_8 = ((__pyx_v_ret < 0) != 0);
2022-04-26T05:53:17,603         |                   ~~~~~~~~~~~~~~~~~~~^~~~~
2022-04-26T05:53:17,657   python/pyslow5.c:33760:8: note: ‘__pyx_v_ret’ was declared here
2022-04-26T05:53:17,658   33760 |   long __pyx_v_ret;
2022-04-26T05:53:17,658         |        ^~~~~~~~~~~
2022-04-26T05:53:36,183   python/pyslow5.c: In function ‘__pyx_pw_7pyslow5_4Open_61write_record_batch’:
2022-04-26T05:53:36,239   python/pyslow5.c:39735:42: warning: ‘__pyx_v_ret’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-04-26T05:53:36,239   39735 |           __pyx_t_4 = ((__pyx_v_ret < 0) != 0);
2022-04-26T05:53:36,239         |                       ~~~~~~~~~~~~~~~~~~~^~~~~
2022-04-26T05:53:36,298   python/pyslow5.c:36426:8: note: ‘__pyx_v_ret’ was declared here
2022-04-26T05:53:36,298   36426 |   long __pyx_v_ret;
2022-04-26T05:53:36,298         |        ^~~~~~~~~~~
2022-04-26T05:54:39,201   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/slow5_write.c -o build/temp.linux-armv7l-3.9/python/slow5_write.o -g -Wall -O2 -std=c99
2022-04-26T05:54:40,324   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/slow5threads.c -o build/temp.linux-armv7l-3.9/python/slow5threads.o -g -Wall -O2 -std=c99
2022-04-26T05:54:41,742   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5.c -o build/temp.linux-armv7l-3.9/src/slow5.o -g -Wall -O2 -std=c99
2022-04-26T05:54:42,162   src/slow5.c: In function ‘slow5_init’:
2022-04-26T05:54:42,166   src/slow5.c:182:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2022-04-26T05:54:42,167     182 |     if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
2022-04-26T05:54:42,167         |                                                   ^~
2022-04-26T05:54:42,281   src/slow5.c: In function ‘slow5_get_mem’:
2022-04-26T05:54:42,285   src/slow5.c:2180:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-26T05:54:42,285    2180 |     if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) {
2022-04-26T05:54:42,285         |                                                 ^~
2022-04-26T05:54:42,290   In file included from include/slow5/slow5.h:55,
2022-04-26T05:54:42,290                    from src/slow5.c:40:
2022-04-26T05:54:42,291   include/slow5/slow5_error.h:79:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=]
2022-04-26T05:54:42,291      79 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m "
2022-04-26T05:54:42,291         |                            ^~~~~~~~~~~~~~~~~~~~~~~~
2022-04-26T05:54:42,292   include/slow5/slow5_error.h:116:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’
2022-04-26T05:54:42,292     116 |         fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \
2022-04-26T05:54:42,292         |                         ^~~~~~~~~~~~~~~~~~
2022-04-26T05:54:42,293   src/slow5.c:2181:9: note: in expansion of macro ‘SLOW5_ERROR’
2022-04-26T05:54:42,293    2181 |         SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.",
2022-04-26T05:54:42,293         |         ^~~~~~~~~~~
2022-04-26T05:54:42,332   src/slow5.c: In function ‘slow5_rec_aux_parse’:
2022-04-26T05:54:42,336   include/slow5/slow5_error.h:79:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2022-04-26T05:54:42,336      79 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m "
2022-04-26T05:54:42,336         |                            ^~~~~~~~~~~~~~~~~~~~~~~~
2022-04-26T05:54:42,337   include/slow5/slow5_error.h:116:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’
2022-04-26T05:54:42,337     116 |         fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \
2022-04-26T05:54:42,337         |                         ^~~~~~~~~~~~~~~~~~
2022-04-26T05:54:42,338   src/slow5.c:2771:17: note: in expansion of macro ‘SLOW5_ERROR’
2022-04-26T05:54:42,338    2771 |                 SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size);
2022-04-26T05:54:42,338         |                 ^~~~~~~~~~~
2022-04-26T05:55:03,560   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_idx.c -o build/temp.linux-armv7l-3.9/src/slow5_idx.o -g -Wall -O2 -std=c99
2022-04-26T05:55:05,775   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_misc.c -o build/temp.linux-armv7l-3.9/src/slow5_misc.o -g -Wall -O2 -std=c99
2022-04-26T05:55:06,875   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_press.c -o build/temp.linux-armv7l-3.9/src/slow5_press.o -g -Wall -O2 -std=c99
2022-04-26T05:55:07,277   src/slow5_press.c: In function ‘slow5_fwrite_compress’:
2022-04-26T05:55:07,280   src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-26T05:55:07,280     558 |                 if (bytes != size * nmemb || ferror(fp)) {
2022-04-26T05:55:07,281         |                           ^~
2022-04-26T05:55:07,281   src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-26T05:55:07,282     559 |                     if (bytes != size * nmemb) {
2022-04-26T05:55:07,282         |                               ^~
2022-04-26T05:55:07,288   src/slow5_press.c: In function ‘slow5_pread_depress_solo’:
2022-04-26T05:55:07,289   src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-04-26T05:55:07,290     686 |     if ((ret = pread(fd, raw, count, offset)) != count) {
2022-04-26T05:55:07,290         |                                               ^~
2022-04-26T05:55:09,540   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_decode.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_decode.o -g -Wall -O2 -std=c99
2022-04-26T05:55:09,736   In file included from thirdparty/streamvbyte/src/streamvbyte_decode.c:25:
2022-04-26T05:55:09,736   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h:22:16: warning: ‘shuffleTable’ defined but not used [-Wunused-variable]
2022-04-26T05:55:09,737      22 | static uint8_t shuffleTable[256][16] = {
2022-04-26T05:55:09,737         |                ^~~~~~~~~~~~
2022-04-26T05:55:09,738   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h:2:16: warning: ‘lengthTable’ defined but not used [-Wunused-variable]
2022-04-26T05:55:09,738       2 | static uint8_t lengthTable[256] ={
2022-04-26T05:55:09,738         |                ^~~~~~~~~~~
2022-04-26T05:55:09,920   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_encode.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_encode.o -g -Wall -O2 -std=c99
2022-04-26T05:55:10,111   In file included from thirdparty/streamvbyte/src/streamvbyte_encode.c:25:
2022-04-26T05:55:10,111   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_encode.h:93:16: warning: ‘encodingShuffleTable’ defined but not used [-Wunused-variable]
2022-04-26T05:55:10,112      93 | static uint8_t encodingShuffleTable[256][16] = {
2022-04-26T05:55:10,112         |                ^~~~~~~~~~~~~~~~~~~~
2022-04-26T05:55:10,304   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_zigzag.c -o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -g -Wall -O2 -std=c99
2022-04-26T05:55:10,659   creating build/lib.linux-armv7l-3.9
2022-04-26T05:55:10,661   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/python/pyslow5.o build/temp.linux-armv7l-3.9/python/slow5_write.o build/temp.linux-armv7l-3.9/python/slow5threads.o build/temp.linux-armv7l-3.9/src/slow5.o build/temp.linux-armv7l-3.9/src/slow5_idx.o build/temp.linux-armv7l-3.9/src/slow5_misc.o build/temp.linux-armv7l-3.9/src/slow5_press.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_decode.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_encode.o build/temp.linux-armv7l-3.9/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -L. -L/usr/lib -lm -lz -o build/lib.linux-armv7l-3.9/pyslow5.cpython-39-arm-linux-gnueabihf.so
2022-04-26T05:55:11,382   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-04-26T05:55:11,382     warnings.warn(
2022-04-26T05:55:11,391   running install
2022-04-26T05:55:11,454   running install_lib
2022-04-26T05:55:11,462   creating build/bdist.linux-armv7l
2022-04-26T05:55:11,462   creating build/bdist.linux-armv7l/wheel
2022-04-26T05:55:11,619   running install_egg_info
2022-04-26T05:55:11,669   running egg_info
2022-04-26T05:55:11,737   writing manifest file 'pyslow5.egg-info/SOURCES.txt'
2022-04-26T05:55:11,740   Copying pyslow5.egg-info to build/bdist.linux-armv7l/wheel/pyslow5-0.5.0a1-py3.9.egg-info
2022-04-26T05:55:11,761   running install_scripts
2022-04-26T05:55:14,386   Building wheel for pyslow5 (setup.py): finished with status 'done'
2022-04-26T05:55:14,434   Created wheel for pyslow5: filename=pyslow5-0.5.0a1-cp39-cp39-linux_armv7l.whl size=1334631 sha256=f60dd1a7610ded2f7dbb4dbd590d3f59fdde5eb7327b913d5feccc0adb0ffdde
2022-04-26T05:55:14,436   Stored in directory: /tmp/pip-ephem-wheel-cache-yephhsxp/wheels/62/68/cf/b2ed935c7b9671d63d121a6ebcd4a21d678f25014706797a12
2022-04-26T05:55:14,463 Successfully built pyslow5
2022-04-26T05:55:14,570 Removed build tracker: '/tmp/pip-req-tracker-arh6eviu'