2022-04-29T16:00:36,753 Created temporary directory: /tmp/pip-ephem-wheel-cache-325l40fr 2022-04-29T16:00:36,759 Created temporary directory: /tmp/pip-req-tracker-dzmtk66b 2022-04-29T16:00:36,760 Initialized build tracking at /tmp/pip-req-tracker-dzmtk66b 2022-04-29T16:00:36,760 Created build tracker: /tmp/pip-req-tracker-dzmtk66b 2022-04-29T16:00:36,760 Entered build tracker: /tmp/pip-req-tracker-dzmtk66b 2022-04-29T16:00:36,762 Created temporary directory: /tmp/pip-wheel-phfgncnh 2022-04-29T16:00:36,828 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-29T16:00:36,836 2 location(s) to search for versions of scib: 2022-04-29T16:00:36,836 * https://pypi.org/simple/scib/ 2022-04-29T16:00:36,836 * https://www.piwheels.org/simple/scib/ 2022-04-29T16:00:36,837 Fetching project page and analyzing links: https://pypi.org/simple/scib/ 2022-04-29T16:00:36,839 Getting page https://pypi.org/simple/scib/ 2022-04-29T16:00:36,842 Found index url https://pypi.org/simple 2022-04-29T16:00:36,951 Skipping link: No binaries permitted for scib: https://files.pythonhosted.org/packages/10/9c/da43e1b07575cc7e885a0704e7e580d1603765fc633d8f5d8a9f5928c945/scib-1.0.0-1-py3-none-any.whl#sha256=c34bea741f4183e34a7e8811043a50bac76ead44569ac33f65d46ed42b06c77c (from https://pypi.org/simple/scib/) (requires-python:>=3.7) 2022-04-29T16:00:36,953 Found link https://files.pythonhosted.org/packages/22/b8/e350757bc55516a7fbd7fde61d9f8b707ddf0f5cd2ed12f63387817eedce/scib-1.0.0.tar.gz#sha256=d8fa3596433fcfd7ef5cc57022f77ee7eed0dafb37eaa87800cd190b12604a4d (from https://pypi.org/simple/scib/) (requires-python:>=3.7), version: 1.0.0 2022-04-29T16:00:36,954 Skipping link: No binaries permitted for scib: https://files.pythonhosted.org/packages/7e/86/bfe1acff3a117e3ce4217302505770d8afdb22728519495f7d4f3205d509/scib-1.0.1-1-py3-none-any.whl#sha256=e1240a017257dfcda3d3626f5fba7dcde4d3d34436ef59aa6c35cfe0966f7eb1 (from https://pypi.org/simple/scib/) (requires-python:>=3.7) 2022-04-29T16:00:36,955 Found link https://files.pythonhosted.org/packages/41/50/f76907e82dd7b68544ca43197f5a4fb98fee9f1990ab325a64cd8ab5d53b/scib-1.0.1.tar.gz#sha256=6905c34606cc13737604de7af328ba42047bb8f7e5689f2f68cc55ba958a6919 (from https://pypi.org/simple/scib/) (requires-python:>=3.7), version: 1.0.1 2022-04-29T16:00:36,956 Skipping link: No binaries permitted for scib: https://files.pythonhosted.org/packages/a6/d5/57dbee153548598cf31f7cc4c95b0b71bbe98dcaffa2f1972e9c908474db/scib-1.0.2-1-py3-none-any.whl#sha256=d7d0fa9052d1463a0af008bfc006e4fccdb5c79e6e7d044549079ddbe68510ac (from https://pypi.org/simple/scib/) (requires-python:>=3.7) 2022-04-29T16:00:36,957 Found link https://files.pythonhosted.org/packages/54/bb/1b5799a0b7096e10cc70cef74e20dab4371f649702319b8c815feb11cc20/scib-1.0.2.tar.gz#sha256=d6696f8933936d8b540dd603d8da8cbe295b15bbc948520978078d479e76e453 (from https://pypi.org/simple/scib/) (requires-python:>=3.7), version: 1.0.2 2022-04-29T16:00:36,958 Fetching project page and analyzing links: https://www.piwheels.org/simple/scib/ 2022-04-29T16:00:36,958 Getting page https://www.piwheels.org/simple/scib/ 2022-04-29T16:00:36,960 Found index url https://www.piwheels.org/simple 2022-04-29T16:00:37,170 Skipping link: No binaries permitted for scib: https://www.piwheels.org/simple/scib/scib-1.0.1-1-py3-none-any.whl#sha256=83926e36ba76c4e67d24321b4be2b9913d33b8b3dcf166ff1c4f33965d4decea (from https://www.piwheels.org/simple/scib/) (requires-python:>=3.7) 2022-04-29T16:00:37,170 Skipping link: No binaries permitted for scib: https://www.piwheels.org/simple/scib/scib-1.0.0-1-py3-none-any.whl#sha256=3ca7168126396ecbe27544974e001404d860907b5538d13be6d9c8da41f3ec3e (from https://www.piwheels.org/simple/scib/) (requires-python:>=3.7) 2022-04-29T16:00:37,171 Skipping link: not a file: https://www.piwheels.org/simple/scib/ 2022-04-29T16:00:37,171 Skipping link: not a file: https://pypi.org/simple/scib/ 2022-04-29T16:00:37,206 Given no hashes to check 1 links for project 'scib': discarding no candidates 2022-04-29T16:00:37,237 Collecting scib==1.0.2 2022-04-29T16:00:37,241 Created temporary directory: /tmp/pip-unpack-5q8svq2o 2022-04-29T16:00:37,515 Downloading scib-1.0.2.tar.gz (68 kB) 2022-04-29T16:00:37,768 Added scib==1.0.2 from https://files.pythonhosted.org/packages/54/bb/1b5799a0b7096e10cc70cef74e20dab4371f649702319b8c815feb11cc20/scib-1.0.2.tar.gz#sha256=d6696f8933936d8b540dd603d8da8cbe295b15bbc948520978078d479e76e453 to build tracker '/tmp/pip-req-tracker-dzmtk66b' 2022-04-29T16:00:37,776 Created temporary directory: /tmp/pip-build-env-s7modq38 2022-04-29T16:00:37,790 Created temporary directory: /tmp/pip-standalone-pip-y404169e 2022-04-29T16:00:39,945 Installing build dependencies: started 2022-04-29T16:00:39,947 Running command pip subprocess to install build dependencies 2022-04-29T16:00:50,104 Using pip 22.0.4 from /tmp/pip-standalone-pip-y404169e/__env_pip__.zip/pip (python 3.7) 2022-04-29T16:00:51,594 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-04-29T16:00:55,810 Collecting setuptools 2022-04-29T16:00:56,072 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.1.0-py3-none-any.whl (1.1 MB) 2022-04-29T16:00:56,723 Collecting wheel 2022-04-29T16:00:56,757 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-04-29T16:01:06,262 Installing collected packages: wheel, setuptools 2022-04-29T16:01:06,530 Creating /tmp/pip-build-env-s7modq38/overlay/bin 2022-04-29T16:01:06,535 changing mode of /tmp/pip-build-env-s7modq38/overlay/bin/wheel to 755 2022-04-29T16:01:11,200 Successfully installed setuptools-62.1.0 wheel-0.37.1 2022-04-29T16:01:11,864 Installing build dependencies: finished with status 'done' 2022-04-29T16:01:11,891 Getting requirements to build wheel: started 2022-04-29T16:01:11,893 Running command Getting requirements to build wheel 2022-04-29T16:01:13,253 Compile knn_graph C++ code for LISI metric... 2022-04-29T16:01:23,085 running egg_info 2022-04-29T16:01:23,146 writing manifest file 'scib.egg-info/SOURCES.txt' 2022-04-29T16:01:23,279 Getting requirements to build wheel: finished with status 'done' 2022-04-29T16:01:23,299 Created temporary directory: /tmp/pip-modern-metadata-9cjp8hnb 2022-04-29T16:01:23,304 Preparing metadata (pyproject.toml): started 2022-04-29T16:01:23,307 Running command Preparing metadata (pyproject.toml) 2022-04-29T16:01:24,655 Compile knn_graph C++ code for LISI metric... 2022-04-29T16:01:34,222 running dist_info 2022-04-29T16:01:34,255 creating /tmp/pip-modern-metadata-9cjp8hnb/scib.egg-info 2022-04-29T16:01:34,273 writing manifest file '/tmp/pip-modern-metadata-9cjp8hnb/scib.egg-info/SOURCES.txt' 2022-04-29T16:01:34,321 writing manifest file '/tmp/pip-modern-metadata-9cjp8hnb/scib.egg-info/SOURCES.txt' 2022-04-29T16:01:34,857 Preparing metadata (pyproject.toml): finished with status 'done' 2022-04-29T16:01:34,956 Source in /tmp/pip-wheel-phfgncnh/scib_fb65c72c5b244314b0b054933bf02e46 has version 1.0.2, which satisfies requirement scib==1.0.2 from https://files.pythonhosted.org/packages/54/bb/1b5799a0b7096e10cc70cef74e20dab4371f649702319b8c815feb11cc20/scib-1.0.2.tar.gz#sha256=d6696f8933936d8b540dd603d8da8cbe295b15bbc948520978078d479e76e453 2022-04-29T16:01:35,013 Removed scib==1.0.2 from https://files.pythonhosted.org/packages/54/bb/1b5799a0b7096e10cc70cef74e20dab4371f649702319b8c815feb11cc20/scib-1.0.2.tar.gz#sha256=d6696f8933936d8b540dd603d8da8cbe295b15bbc948520978078d479e76e453 from build tracker '/tmp/pip-req-tracker-dzmtk66b' 2022-04-29T16:01:35,028 Created temporary directory: /tmp/pip-unpack-msemllor 2022-04-29T16:01:35,029 Building wheels for collected packages: scib 2022-04-29T16:01:35,038 Created temporary directory: /tmp/pip-wheel-cjzxrgci 2022-04-29T16:01:35,039 Destination directory: /tmp/pip-wheel-cjzxrgci 2022-04-29T16:01:35,123 Building wheel for scib (pyproject.toml): started 2022-04-29T16:01:35,125 Running command Building wheel for scib (pyproject.toml) 2022-04-29T16:01:36,493 Compile knn_graph C++ code for LISI metric... 2022-04-29T16:01:46,189 running bdist_wheel 2022-04-29T16:01:46,642 running build 2022-04-29T16:01:46,643 running build_py 2022-04-29T16:01:46,652 creating build 2022-04-29T16:01:46,654 creating build/lib 2022-04-29T16:01:46,656 creating build/lib/scib 2022-04-29T16:01:46,658 copying scib/preprocessing.py -> build/lib/scib 2022-04-29T16:01:46,665 copying scib/__init__.py -> build/lib/scib 2022-04-29T16:01:46,668 copying scib/exceptions.py -> build/lib/scib 2022-04-29T16:01:46,672 copying scib/integration.py -> build/lib/scib 2022-04-29T16:01:46,676 copying scib/_package_tools.py -> build/lib/scib 2022-04-29T16:01:46,680 copying scib/trajectory_inference.py -> build/lib/scib 2022-04-29T16:01:46,683 copying scib/utils.py -> build/lib/scib 2022-04-29T16:01:46,689 creating build/lib/scib/metrics 2022-04-29T16:01:46,690 copying scib/metrics/trajectory.py -> build/lib/scib/metrics 2022-04-29T16:01:46,694 copying scib/metrics/__init__.py -> build/lib/scib/metrics 2022-04-29T16:01:46,698 copying scib/metrics/nmi.py -> build/lib/scib/metrics 2022-04-29T16:01:46,702 copying scib/metrics/cell_cycle.py -> build/lib/scib/metrics 2022-04-29T16:01:46,706 copying scib/metrics/clustering.py -> build/lib/scib/metrics 2022-04-29T16:01:46,709 copying scib/metrics/lisi.py -> build/lib/scib/metrics 2022-04-29T16:01:46,714 copying scib/metrics/ari.py -> build/lib/scib/metrics 2022-04-29T16:01:46,717 copying scib/metrics/kbet.py -> build/lib/scib/metrics 2022-04-29T16:01:46,722 copying scib/metrics/silhouette.py -> build/lib/scib/metrics 2022-04-29T16:01:46,725 copying scib/metrics/utils.py -> build/lib/scib/metrics 2022-04-29T16:01:46,729 copying scib/metrics/pcr.py -> build/lib/scib/metrics 2022-04-29T16:01:46,733 copying scib/metrics/isolated_labels.py -> build/lib/scib/metrics 2022-04-29T16:01:46,737 copying scib/metrics/graph_connectivity.py -> build/lib/scib/metrics 2022-04-29T16:01:46,741 copying scib/metrics/highly_variable_genes.py -> build/lib/scib/metrics 2022-04-29T16:01:46,744 copying scib/metrics/metrics.py -> build/lib/scib/metrics 2022-04-29T16:01:46,755 creating build/lib/scib/resources 2022-04-29T16:01:46,756 copying scib/resources/s_genes_tirosh.txt -> build/lib/scib/resources 2022-04-29T16:01:46,760 copying scib/resources/g2m_genes_tirosh_hm.txt -> build/lib/scib/resources 2022-04-29T16:01:46,764 copying scib/resources/g2m_genes_tirosh.txt -> build/lib/scib/resources 2022-04-29T16:01:46,768 copying scib/resources/s_genes_tirosh_hm.txt -> build/lib/scib/resources 2022-04-29T16:01:46,771 creating build/lib/scib/knn_graph 2022-04-29T16:01:46,773 copying scib/knn_graph/makefile -> build/lib/scib/knn_graph 2022-04-29T16:01:46,776 copying scib/knn_graph/knn_graph.cpp -> build/lib/scib/knn_graph 2022-04-29T16:01:46,781 copying scib/knn_graph/README.md -> build/lib/scib/knn_graph 2022-04-29T16:01:46,785 copying scib/knn_graph/knn_graph.o -> build/lib/scib/knn_graph 2022-04-29T16:01:46,807 running install 2022-04-29T16:01:46,870 running install_lib 2022-04-29T16:01:46,877 creating build/bdist.linux-armv7l 2022-04-29T16:01:46,877 creating build/bdist.linux-armv7l/wheel 2022-04-29T16:01:46,881 creating build/bdist.linux-armv7l/wheel/scib 2022-04-29T16:01:46,892 creating build/bdist.linux-armv7l/wheel/scib/metrics 2022-04-29T16:01:46,952 creating build/bdist.linux-armv7l/wheel/scib/knn_graph 2022-04-29T16:01:46,980 creating build/bdist.linux-armv7l/wheel/scib/resources 2022-04-29T16:01:47,000 running install_egg_info 2022-04-29T16:01:47,038 running egg_info 2022-04-29T16:01:47,076 writing manifest file 'scib.egg-info/SOURCES.txt' 2022-04-29T16:01:47,079 Copying scib.egg-info to build/bdist.linux-armv7l/wheel/scib-1.0.2-py3.7.egg-info 2022-04-29T16:01:47,102 running install_scripts 2022-04-29T16:01:47,711 Building wheel for scib (pyproject.toml): finished with status 'done' 2022-04-29T16:01:47,726 Created wheel for scib: filename=scib-1.0.2-1-py3-none-any.whl size=70619 sha256=698589ff9d5cede77ac9a0fce95f7322af521401a86f13f49849cae8e422ec57 2022-04-29T16:01:47,729 Stored in directory: /tmp/pip-ephem-wheel-cache-325l40fr/wheels/f3/bd/81/be7c1207d5bf00e717352ae29b5ebf2e365c8d30d6716f93c9 2022-04-29T16:01:47,755 Successfully built scib 2022-04-29T16:01:47,767 Removed build tracker: '/tmp/pip-req-tracker-dzmtk66b'