2022-05-04T06:57:08,293 Created temporary directory: /tmp/pip-ephem-wheel-cache-tys5fj9y 2022-05-04T06:57:08,299 Created temporary directory: /tmp/pip-req-tracker-r4kxzdgm 2022-05-04T06:57:08,300 Initialized build tracking at /tmp/pip-req-tracker-r4kxzdgm 2022-05-04T06:57:08,300 Created build tracker: /tmp/pip-req-tracker-r4kxzdgm 2022-05-04T06:57:08,301 Entered build tracker: /tmp/pip-req-tracker-r4kxzdgm 2022-05-04T06:57:08,302 Created temporary directory: /tmp/pip-wheel-wucv52dh 2022-05-04T06:57:08,367 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-04T06:57:08,371 2 location(s) to search for versions of somaticseq: 2022-05-04T06:57:08,371 * https://pypi.org/simple/somaticseq/ 2022-05-04T06:57:08,371 * https://www.piwheels.org/simple/somaticseq/ 2022-05-04T06:57:08,372 Fetching project page and analyzing links: https://pypi.org/simple/somaticseq/ 2022-05-04T06:57:08,374 Getting page https://pypi.org/simple/somaticseq/ 2022-05-04T06:57:08,378 Found index url https://pypi.org/simple 2022-05-04T06:57:08,699 Found link https://files.pythonhosted.org/packages/66/a1/52de812952b5ebc3df0b945d88d8c72a15fde3a6d44c7761042a4704cdc3/somaticseq-3.7.3.tar.gz#sha256=a11058dda3ab25638cd136c09da85f2f29af7698b944d0644b9480d86cf002a0 (from https://pypi.org/simple/somaticseq/), version: 3.7.3 2022-05-04T06:57:08,700 Fetching project page and analyzing links: https://www.piwheels.org/simple/somaticseq/ 2022-05-04T06:57:08,700 Getting page https://www.piwheels.org/simple/somaticseq/ 2022-05-04T06:57:08,703 Found index url https://www.piwheels.org/simple 2022-05-04T06:57:08,943 Given no hashes to check 1 links for project 'somaticseq': discarding no candidates 2022-05-04T06:57:08,974 Collecting somaticseq==3.7.3 2022-05-04T06:57:08,978 Created temporary directory: /tmp/pip-unpack-_vsce4ff 2022-05-04T06:57:09,212 Downloading somaticseq-3.7.3.tar.gz (123 kB) 2022-05-04T06:57:09,926 Added somaticseq==3.7.3 from https://files.pythonhosted.org/packages/66/a1/52de812952b5ebc3df0b945d88d8c72a15fde3a6d44c7761042a4704cdc3/somaticseq-3.7.3.tar.gz#sha256=a11058dda3ab25638cd136c09da85f2f29af7698b944d0644b9480d86cf002a0 to build tracker '/tmp/pip-req-tracker-r4kxzdgm' 2022-05-04T06:57:09,928 Running setup.py (path:/tmp/pip-wheel-wucv52dh/somaticseq_46fbe97991c34b918ef7713f56b206f0/setup.py) egg_info for package somaticseq 2022-05-04T06:57:09,930 Created temporary directory: /tmp/pip-pip-egg-info-fx3mllle 2022-05-04T06:57:09,930 Running command python setup.py egg_info 2022-05-04T06:57:12,400 3.7.3 2022-05-04T06:57:12,441 running egg_info 2022-05-04T06:57:12,447 creating /tmp/pip-pip-egg-info-fx3mllle/somaticseq.egg-info 2022-05-04T06:57:12,449 writing /tmp/pip-pip-egg-info-fx3mllle/somaticseq.egg-info/PKG-INFO 2022-05-04T06:57:12,455 writing top-level names to /tmp/pip-pip-egg-info-fx3mllle/somaticseq.egg-info/top_level.txt 2022-05-04T06:57:12,458 writing requirements to /tmp/pip-pip-egg-info-fx3mllle/somaticseq.egg-info/requires.txt 2022-05-04T06:57:12,460 writing dependency_links to /tmp/pip-pip-egg-info-fx3mllle/somaticseq.egg-info/dependency_links.txt 2022-05-04T06:57:12,463 writing manifest file '/tmp/pip-pip-egg-info-fx3mllle/somaticseq.egg-info/SOURCES.txt' 2022-05-04T06:57:12,895 reading manifest file '/tmp/pip-pip-egg-info-fx3mllle/somaticseq.egg-info/SOURCES.txt' 2022-05-04T06:57:12,919 writing manifest file '/tmp/pip-pip-egg-info-fx3mllle/somaticseq.egg-info/SOURCES.txt' 2022-05-04T06:57:13,062 Source in /tmp/pip-wheel-wucv52dh/somaticseq_46fbe97991c34b918ef7713f56b206f0 has version 3.7.3, which satisfies requirement somaticseq==3.7.3 from https://files.pythonhosted.org/packages/66/a1/52de812952b5ebc3df0b945d88d8c72a15fde3a6d44c7761042a4704cdc3/somaticseq-3.7.3.tar.gz#sha256=a11058dda3ab25638cd136c09da85f2f29af7698b944d0644b9480d86cf002a0 2022-05-04T06:57:13,063 Removed somaticseq==3.7.3 from https://files.pythonhosted.org/packages/66/a1/52de812952b5ebc3df0b945d88d8c72a15fde3a6d44c7761042a4704cdc3/somaticseq-3.7.3.tar.gz#sha256=a11058dda3ab25638cd136c09da85f2f29af7698b944d0644b9480d86cf002a0 from build tracker '/tmp/pip-req-tracker-r4kxzdgm' 2022-05-04T06:57:13,071 Created temporary directory: /tmp/pip-unpack-xcowftja 2022-05-04T06:57:13,072 Building wheels for collected packages: somaticseq 2022-05-04T06:57:13,081 Created temporary directory: /tmp/pip-wheel-f8rrp5f7 2022-05-04T06:57:13,082 Building wheel for somaticseq (setup.py): started 2022-05-04T06:57:13,083 Destination directory: /tmp/pip-wheel-f8rrp5f7 2022-05-04T06:57:13,084 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-wucv52dh/somaticseq_46fbe97991c34b918ef7713f56b206f0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-wucv52dh/somaticseq_46fbe97991c34b918ef7713f56b206f0/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-f8rrp5f7 2022-05-04T06:57:15,087 3.7.3 2022-05-04T06:57:15,619 running bdist_wheel 2022-05-04T06:57:15,636 running build 2022-05-04T06:57:15,637 running build_py 2022-05-04T06:57:15,979 creating build 2022-05-04T06:57:15,980 creating build/lib 2022-05-04T06:57:15,982 creating build/lib/somaticseq 2022-05-04T06:57:15,984 copying somaticseq/somaticseq_parallel.py -> build/lib/somaticseq 2022-05-04T06:57:15,991 copying somaticseq/combine_callers.py -> build/lib/somaticseq 2022-05-04T06:57:15,997 copying somaticseq/SSeq_tsv2vcf.py -> build/lib/somaticseq 2022-05-04T06:57:16,004 copying somaticseq/tsv2vcf.py -> build/lib/somaticseq 2022-05-04T06:57:16,010 copying somaticseq/_version.py -> build/lib/somaticseq 2022-05-04T06:57:16,014 copying somaticseq/__init__.py -> build/lib/somaticseq 2022-05-04T06:57:16,018 copying somaticseq/somatic_xgboost.py -> build/lib/somaticseq 2022-05-04T06:57:16,023 copying somaticseq/single_sample_vcf2tsv.py -> build/lib/somaticseq 2022-05-04T06:57:16,030 copying somaticseq/sequencing_features.py -> build/lib/somaticseq 2022-05-04T06:57:16,037 copying somaticseq/ntchange_type.py -> build/lib/somaticseq 2022-05-04T06:57:16,043 copying somaticseq/run_somaticseq.py -> build/lib/somaticseq 2022-05-04T06:57:16,052 copying somaticseq/somatic_vcf2tsv.py -> build/lib/somaticseq 2022-05-04T06:57:16,062 copying somaticseq/annotate_caller.py -> build/lib/somaticseq 2022-05-04T06:57:16,070 creating build/lib/r_scripts 2022-05-04T06:57:16,073 copying r_scripts/__init__.py -> build/lib/r_scripts 2022-05-04T06:57:16,082 creating build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,085 copying somaticseq/vcfModifier/splitVcf.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,092 copying somaticseq/vcfModifier/copy_TextFile.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,097 copying somaticseq/vcfModifier/modify_VarScan2.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,102 copying somaticseq/vcfModifier/leftAlign.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,106 copying somaticseq/vcfModifier/vcfIntersector.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,110 copying somaticseq/vcfModifier/__init__.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,114 copying somaticseq/vcfModifier/modify_MuTect.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,119 copying somaticseq/vcfModifier/modify_JointSNVMix2.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,125 copying somaticseq/vcfModifier/modify_Strelka.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,131 copying somaticseq/vcfModifier/modify_VarDict.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,138 copying somaticseq/vcfModifier/complex2indel.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,143 copying somaticseq/vcfModifier/getUniqueVcfPositions.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,149 copying somaticseq/vcfModifier/modify_SomaticSniper.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,155 copying somaticseq/vcfModifier/modify_MuTect2.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,160 copying somaticseq/vcfModifier/modify_ssStrelka.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,164 copying somaticseq/vcfModifier/modify_ssMuTect2.py -> build/lib/somaticseq/vcfModifier 2022-05-04T06:57:16,171 creating build/lib/somaticseq/genomicFileHandler 2022-05-04T06:57:16,173 copying somaticseq/genomicFileHandler/read_info_extractor.py -> build/lib/somaticseq/genomicFileHandler 2022-05-04T06:57:16,180 copying somaticseq/genomicFileHandler/genomic_file_handlers.py -> build/lib/somaticseq/genomicFileHandler 2022-05-04T06:57:16,188 copying somaticseq/genomicFileHandler/concat.py -> build/lib/somaticseq/genomicFileHandler 2022-05-04T06:57:16,194 copying somaticseq/genomicFileHandler/__init__.py -> build/lib/somaticseq/genomicFileHandler 2022-05-04T06:57:16,198 copying somaticseq/genomicFileHandler/pileup_reader.py -> build/lib/somaticseq/genomicFileHandler 2022-05-04T06:57:16,206 creating build/lib/somaticseq/utilities 2022-05-04T06:57:16,208 copying somaticseq/utilities/split_mergedBed.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,213 copying somaticseq/utilities/multi-nucleotide_phaser.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,219 copying somaticseq/utilities/bamQC.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,226 copying somaticseq/utilities/bedFileHandler.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,231 copying somaticseq/utilities/linguistic_sequence_complexity.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,237 copying somaticseq/utilities/__init__.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,241 copying somaticseq/utilities/split_Bed_into_equal_regions.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,246 copying somaticseq/utilities/filter_SomaticSeq_VCF.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,251 copying somaticseq/utilities/paired_end_bam2fastq.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,255 copying somaticseq/utilities/attach_pileupVAF.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,262 copying somaticseq/utilities/plot_TPvsFP.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,269 copying somaticseq/utilities/BAM_filter.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,275 copying somaticseq/utilities/tally_variants_from_multiple_vcfs.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,281 copying somaticseq/utilities/lociCounters.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,286 copying somaticseq/utilities/reformat_VCF2SEQC2.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,291 copying somaticseq/utilities/lociCounterWithLabels.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,296 copying somaticseq/utilities/trimSoftClippedReads.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,301 copying somaticseq/utilities/combo_callers_evaluator.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,307 copying somaticseq/utilities/tally_MyVCF_vs_Truth.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,314 copying somaticseq/utilities/remove_callers_from_somaticseq_tsv.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,320 copying somaticseq/utilities/variant_annotation.py -> build/lib/somaticseq/utilities 2022-05-04T06:57:16,326 creating build/lib/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,328 copying somaticseq/utilities/dockered_pipelines/run_workflows.py -> build/lib/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,333 copying somaticseq/utilities/dockered_pipelines/__init__.py -> build/lib/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,336 copying somaticseq/utilities/dockered_pipelines/tumor_normal_run.py -> build/lib/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,345 copying somaticseq/utilities/dockered_pipelines/makeSomaticScripts.py -> build/lib/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,354 copying somaticseq/utilities/dockered_pipelines/tumor_only_run.py -> build/lib/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,362 copying somaticseq/utilities/dockered_pipelines/container_option.py -> build/lib/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,366 copying somaticseq/utilities/dockered_pipelines/makeAlignmentScripts.py -> build/lib/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,373 creating build/lib/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,375 copying somaticseq/utilities/dockered_pipelines/alignments/markdup.py -> build/lib/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,382 copying somaticseq/utilities/dockered_pipelines/alignments/mergeBams.py -> build/lib/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,389 copying somaticseq/utilities/dockered_pipelines/alignments/__init__.py -> build/lib/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,393 copying somaticseq/utilities/dockered_pipelines/alignments/trim.py -> build/lib/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,401 copying somaticseq/utilities/dockered_pipelines/alignments/spreadFastq.py -> build/lib/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,406 copying somaticseq/utilities/dockered_pipelines/alignments/align.py -> build/lib/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,411 copying somaticseq/utilities/dockered_pipelines/alignments/mergeFastqs.py -> build/lib/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,417 creating build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,419 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/MuTect2.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,426 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/VarScan2.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,434 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/SomaticSniper.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,440 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/__init__.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,446 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/LoFreq.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,453 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/Scalpel.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,460 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/MuSE.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,466 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/JointSNVMix2.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,472 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/Strelka2.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,477 copying somaticseq/utilities/dockered_pipelines/somatic_mutations/VarDict.py -> build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:16,500 copying r_scripts/ada_model_builder_ntChange.R -> build/lib/r_scripts 2022-05-04T06:57:16,506 copying r_scripts/ada_cross_validation.R -> build/lib/r_scripts 2022-05-04T06:57:16,511 copying r_scripts/xgboost_model_predictor.R -> build/lib/r_scripts 2022-05-04T06:57:16,515 copying r_scripts/ada_model_builder.R -> build/lib/r_scripts 2022-05-04T06:57:16,520 copying r_scripts/ada_model_predictor.R -> build/lib/r_scripts 2022-05-04T06:57:16,525 copying r_scripts/xgboost_model_builder_ntChange.R -> build/lib/r_scripts 2022-05-04T06:57:16,555 running build_scripts 2022-05-04T06:57:16,556 creating build/scripts-3.5 2022-05-04T06:57:16,559 copying and adjusting somaticseq/somaticseq_parallel.py -> build/scripts-3.5 2022-05-04T06:57:16,565 copying and adjusting somaticseq/run_somaticseq.py -> build/scripts-3.5 2022-05-04T06:57:16,573 copying and adjusting somaticseq/single_sample_vcf2tsv.py -> build/scripts-3.5 2022-05-04T06:57:16,581 copying and adjusting somaticseq/somatic_vcf2tsv.py -> build/scripts-3.5 2022-05-04T06:57:16,591 copying and adjusting somaticseq/somatic_xgboost.py -> build/scripts-3.5 2022-05-04T06:57:16,597 copying and adjusting somaticseq/SSeq_tsv2vcf.py -> build/scripts-3.5 2022-05-04T06:57:16,606 copying and adjusting somaticseq/genomicFileHandler/concat.py -> build/scripts-3.5 2022-05-04T06:57:16,611 copying and adjusting somaticseq/utilities/linguistic_sequence_complexity.py -> build/scripts-3.5 2022-05-04T06:57:16,615 copying and adjusting somaticseq/utilities/lociCounterWithLabels.py -> build/scripts-3.5 2022-05-04T06:57:16,619 copying and adjusting somaticseq/utilities/paired_end_bam2fastq.py -> build/scripts-3.5 2022-05-04T06:57:16,623 copying and adjusting somaticseq/utilities/remove_callers_from_somaticseq_tsv.py -> build/scripts-3.5 2022-05-04T06:57:16,627 copying and adjusting somaticseq/utilities/split_Bed_into_equal_regions.py -> build/scripts-3.5 2022-05-04T06:57:16,632 copying and adjusting somaticseq/utilities/tally_variants_from_multiple_vcfs.py -> build/scripts-3.5 2022-05-04T06:57:16,640 copying and adjusting somaticseq/utilities/variant_annotation.py -> build/scripts-3.5 2022-05-04T06:57:16,645 copying somaticseq/utilities/vcfsorter.pl -> build/scripts-3.5 2022-05-04T06:57:16,651 copying and adjusting somaticseq/utilities/dockered_pipelines/makeAlignmentScripts.py -> build/scripts-3.5 2022-05-04T06:57:16,656 copying and adjusting somaticseq/utilities/dockered_pipelines/makeSomaticScripts.py -> build/scripts-3.5 2022-05-04T06:57:16,664 copying and adjusting somaticseq/utilities/dockered_pipelines/run_workflows.py -> build/scripts-3.5 2022-05-04T06:57:16,668 copying and adjusting somaticseq/vcfModifier/splitVcf.py -> build/scripts-3.5 2022-05-04T06:57:16,674 copying r_scripts/ada_model_builder_ntChange.R -> build/scripts-3.5 2022-05-04T06:57:16,680 copying r_scripts/ada_model_predictor.R -> build/scripts-3.5 2022-05-04T06:57:16,684 changing mode of build/scripts-3.5/somaticseq_parallel.py from 644 to 755 2022-05-04T06:57:16,686 changing mode of build/scripts-3.5/run_somaticseq.py from 644 to 755 2022-05-04T06:57:16,687 changing mode of build/scripts-3.5/single_sample_vcf2tsv.py from 644 to 755 2022-05-04T06:57:16,688 changing mode of build/scripts-3.5/somatic_vcf2tsv.py from 644 to 755 2022-05-04T06:57:16,689 changing mode of build/scripts-3.5/somatic_xgboost.py from 644 to 755 2022-05-04T06:57:16,690 changing mode of build/scripts-3.5/SSeq_tsv2vcf.py from 644 to 755 2022-05-04T06:57:16,691 changing mode of build/scripts-3.5/concat.py from 644 to 755 2022-05-04T06:57:16,692 changing mode of build/scripts-3.5/linguistic_sequence_complexity.py from 644 to 755 2022-05-04T06:57:16,692 changing mode of build/scripts-3.5/lociCounterWithLabels.py from 644 to 755 2022-05-04T06:57:16,693 changing mode of build/scripts-3.5/paired_end_bam2fastq.py from 644 to 755 2022-05-04T06:57:16,694 changing mode of build/scripts-3.5/remove_callers_from_somaticseq_tsv.py from 644 to 755 2022-05-04T06:57:16,694 changing mode of build/scripts-3.5/split_Bed_into_equal_regions.py from 644 to 755 2022-05-04T06:57:16,695 changing mode of build/scripts-3.5/tally_variants_from_multiple_vcfs.py from 644 to 755 2022-05-04T06:57:16,696 changing mode of build/scripts-3.5/variant_annotation.py from 644 to 755 2022-05-04T06:57:16,696 changing mode of build/scripts-3.5/makeAlignmentScripts.py from 644 to 755 2022-05-04T06:57:16,697 changing mode of build/scripts-3.5/makeSomaticScripts.py from 644 to 755 2022-05-04T06:57:16,698 changing mode of build/scripts-3.5/run_workflows.py from 644 to 755 2022-05-04T06:57:16,698 changing mode of build/scripts-3.5/splitVcf.py from 644 to 755 2022-05-04T06:57:16,705 installing to build/bdist.linux-armv7l/wheel 2022-05-04T06:57:16,706 running install 2022-05-04T06:57:16,708 running install_lib 2022-05-04T06:57:16,717 creating build/bdist.linux-armv7l 2022-05-04T06:57:16,718 creating build/bdist.linux-armv7l/wheel 2022-05-04T06:57:16,722 creating build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:16,725 creating build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,727 copying build/lib/somaticseq/vcfModifier/splitVcf.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,732 copying build/lib/somaticseq/vcfModifier/copy_TextFile.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,736 copying build/lib/somaticseq/vcfModifier/modify_VarScan2.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,742 copying build/lib/somaticseq/vcfModifier/leftAlign.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,746 copying build/lib/somaticseq/vcfModifier/vcfIntersector.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,751 copying build/lib/somaticseq/vcfModifier/__init__.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,755 copying build/lib/somaticseq/vcfModifier/modify_MuTect.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,761 copying build/lib/somaticseq/vcfModifier/modify_JointSNVMix2.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,767 copying build/lib/somaticseq/vcfModifier/modify_Strelka.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,772 copying build/lib/somaticseq/vcfModifier/modify_VarDict.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,777 copying build/lib/somaticseq/vcfModifier/complex2indel.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,781 copying build/lib/somaticseq/vcfModifier/getUniqueVcfPositions.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,785 copying build/lib/somaticseq/vcfModifier/modify_SomaticSniper.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,789 copying build/lib/somaticseq/vcfModifier/modify_MuTect2.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,795 copying build/lib/somaticseq/vcfModifier/modify_ssStrelka.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,801 copying build/lib/somaticseq/vcfModifier/modify_ssMuTect2.py -> build/bdist.linux-armv7l/wheel/somaticseq/vcfModifier 2022-05-04T06:57:16,809 creating build/bdist.linux-armv7l/wheel/somaticseq/genomicFileHandler 2022-05-04T06:57:16,812 copying build/lib/somaticseq/genomicFileHandler/read_info_extractor.py -> build/bdist.linux-armv7l/wheel/somaticseq/genomicFileHandler 2022-05-04T06:57:16,818 copying build/lib/somaticseq/genomicFileHandler/genomic_file_handlers.py -> build/bdist.linux-armv7l/wheel/somaticseq/genomicFileHandler 2022-05-04T06:57:16,824 copying build/lib/somaticseq/genomicFileHandler/concat.py -> build/bdist.linux-armv7l/wheel/somaticseq/genomicFileHandler 2022-05-04T06:57:16,830 copying build/lib/somaticseq/genomicFileHandler/__init__.py -> build/bdist.linux-armv7l/wheel/somaticseq/genomicFileHandler 2022-05-04T06:57:16,833 copying build/lib/somaticseq/genomicFileHandler/pileup_reader.py -> build/bdist.linux-armv7l/wheel/somaticseq/genomicFileHandler 2022-05-04T06:57:16,840 copying build/lib/somaticseq/somaticseq_parallel.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:16,847 copying build/lib/somaticseq/combine_callers.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:16,855 copying build/lib/somaticseq/SSeq_tsv2vcf.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:16,864 creating build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:16,867 creating build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,869 copying build/lib/somaticseq/utilities/dockered_pipelines/run_workflows.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,876 creating build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,878 copying build/lib/somaticseq/utilities/dockered_pipelines/alignments/markdup.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,886 copying build/lib/somaticseq/utilities/dockered_pipelines/alignments/mergeBams.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,893 copying build/lib/somaticseq/utilities/dockered_pipelines/alignments/__init__.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,897 copying build/lib/somaticseq/utilities/dockered_pipelines/alignments/trim.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,952 copying build/lib/somaticseq/utilities/dockered_pipelines/alignments/spreadFastq.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,958 copying build/lib/somaticseq/utilities/dockered_pipelines/alignments/align.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,964 copying build/lib/somaticseq/utilities/dockered_pipelines/alignments/mergeFastqs.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/alignments 2022-05-04T06:57:16,970 copying build/lib/somaticseq/utilities/dockered_pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,974 copying build/lib/somaticseq/utilities/dockered_pipelines/tumor_normal_run.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,983 copying build/lib/somaticseq/utilities/dockered_pipelines/makeSomaticScripts.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,990 copying build/lib/somaticseq/utilities/dockered_pipelines/tumor_only_run.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:16,997 copying build/lib/somaticseq/utilities/dockered_pipelines/container_option.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:17,002 creating build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,005 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/MuTect2.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,012 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/VarScan2.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,019 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/SomaticSniper.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,026 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/__init__.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,030 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/LoFreq.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,037 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/Scalpel.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,044 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/MuSE.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,049 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/JointSNVMix2.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,054 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/Strelka2.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,059 copying build/lib/somaticseq/utilities/dockered_pipelines/somatic_mutations/VarDict.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines/somatic_mutations 2022-05-04T06:57:17,064 copying build/lib/somaticseq/utilities/dockered_pipelines/makeAlignmentScripts.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities/dockered_pipelines 2022-05-04T06:57:17,071 copying build/lib/somaticseq/utilities/split_mergedBed.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,077 copying build/lib/somaticseq/utilities/multi-nucleotide_phaser.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,083 copying build/lib/somaticseq/utilities/bamQC.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,088 copying build/lib/somaticseq/utilities/bedFileHandler.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,092 copying build/lib/somaticseq/utilities/linguistic_sequence_complexity.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,096 copying build/lib/somaticseq/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,100 copying build/lib/somaticseq/utilities/split_Bed_into_equal_regions.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,105 copying build/lib/somaticseq/utilities/filter_SomaticSeq_VCF.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,110 copying build/lib/somaticseq/utilities/paired_end_bam2fastq.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,116 copying build/lib/somaticseq/utilities/attach_pileupVAF.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,123 copying build/lib/somaticseq/utilities/plot_TPvsFP.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,130 copying build/lib/somaticseq/utilities/BAM_filter.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,135 copying build/lib/somaticseq/utilities/tally_variants_from_multiple_vcfs.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,142 copying build/lib/somaticseq/utilities/lociCounters.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,148 copying build/lib/somaticseq/utilities/reformat_VCF2SEQC2.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,153 copying build/lib/somaticseq/utilities/lociCounterWithLabels.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,158 copying build/lib/somaticseq/utilities/trimSoftClippedReads.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,162 copying build/lib/somaticseq/utilities/combo_callers_evaluator.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,166 copying build/lib/somaticseq/utilities/tally_MyVCF_vs_Truth.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,172 copying build/lib/somaticseq/utilities/remove_callers_from_somaticseq_tsv.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,176 copying build/lib/somaticseq/utilities/variant_annotation.py -> build/bdist.linux-armv7l/wheel/somaticseq/utilities 2022-05-04T06:57:17,180 copying build/lib/somaticseq/tsv2vcf.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,187 copying build/lib/somaticseq/_version.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,191 copying build/lib/somaticseq/__init__.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,195 copying build/lib/somaticseq/somatic_xgboost.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,200 copying build/lib/somaticseq/single_sample_vcf2tsv.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,207 copying build/lib/somaticseq/sequencing_features.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,213 copying build/lib/somaticseq/ntchange_type.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,217 copying build/lib/somaticseq/run_somaticseq.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,224 copying build/lib/somaticseq/somatic_vcf2tsv.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,234 copying build/lib/somaticseq/annotate_caller.py -> build/bdist.linux-armv7l/wheel/somaticseq 2022-05-04T06:57:17,243 creating build/bdist.linux-armv7l/wheel/r_scripts 2022-05-04T06:57:17,245 copying build/lib/r_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/r_scripts 2022-05-04T06:57:17,250 copying build/lib/r_scripts/ada_model_builder_ntChange.R -> build/bdist.linux-armv7l/wheel/r_scripts 2022-05-04T06:57:17,254 copying build/lib/r_scripts/ada_cross_validation.R -> build/bdist.linux-armv7l/wheel/r_scripts 2022-05-04T06:57:17,258 copying build/lib/r_scripts/xgboost_model_predictor.R -> build/bdist.linux-armv7l/wheel/r_scripts 2022-05-04T06:57:17,262 copying build/lib/r_scripts/ada_model_builder.R -> build/bdist.linux-armv7l/wheel/r_scripts 2022-05-04T06:57:17,266 copying build/lib/r_scripts/ada_model_predictor.R -> build/bdist.linux-armv7l/wheel/r_scripts 2022-05-04T06:57:17,270 copying build/lib/r_scripts/xgboost_model_builder_ntChange.R -> build/bdist.linux-armv7l/wheel/r_scripts 2022-05-04T06:57:17,274 running install_egg_info 2022-05-04T06:57:17,322 running egg_info 2022-05-04T06:57:17,324 writing dependency_links to somaticseq.egg-info/dependency_links.txt 2022-05-04T06:57:17,328 writing top-level names to somaticseq.egg-info/top_level.txt 2022-05-04T06:57:17,330 writing requirements to somaticseq.egg-info/requires.txt 2022-05-04T06:57:17,333 writing somaticseq.egg-info/PKG-INFO 2022-05-04T06:57:17,387 reading manifest file 'somaticseq.egg-info/SOURCES.txt' 2022-05-04T06:57:17,413 writing manifest file 'somaticseq.egg-info/SOURCES.txt' 2022-05-04T06:57:17,417 Copying somaticseq.egg-info to build/bdist.linux-armv7l/wheel/somaticseq-3.7.3-py3.5.egg-info 2022-05-04T06:57:17,440 running install_scripts 2022-05-04T06:57:17,573 creating build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data 2022-05-04T06:57:17,573 creating build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,576 copying build/scripts-3.5/vcfsorter.pl -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,580 copying build/scripts-3.5/splitVcf.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,585 copying build/scripts-3.5/somaticseq_parallel.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,591 copying build/scripts-3.5/run_workflows.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,596 copying build/scripts-3.5/SSeq_tsv2vcf.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,603 copying build/scripts-3.5/concat.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,608 copying build/scripts-3.5/linguistic_sequence_complexity.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,612 copying build/scripts-3.5/somatic_xgboost.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,619 copying build/scripts-3.5/ada_model_builder_ntChange.R -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,624 copying build/scripts-3.5/single_sample_vcf2tsv.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,634 copying build/scripts-3.5/split_Bed_into_equal_regions.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,639 copying build/scripts-3.5/paired_end_bam2fastq.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,643 copying build/scripts-3.5/makeSomaticScripts.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,651 copying build/scripts-3.5/tally_variants_from_multiple_vcfs.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,657 copying build/scripts-3.5/run_somaticseq.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,666 copying build/scripts-3.5/somatic_vcf2tsv.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,676 copying build/scripts-3.5/lociCounterWithLabels.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,681 copying build/scripts-3.5/ada_model_predictor.R -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,686 copying build/scripts-3.5/makeAlignmentScripts.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,691 copying build/scripts-3.5/remove_callers_from_somaticseq_tsv.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,696 copying build/scripts-3.5/variant_annotation.py -> build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts 2022-05-04T06:57:17,701 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/vcfsorter.pl to 755 2022-05-04T06:57:17,702 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/splitVcf.py to 755 2022-05-04T06:57:17,704 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/somaticseq_parallel.py to 755 2022-05-04T06:57:17,705 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/run_workflows.py to 755 2022-05-04T06:57:17,706 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/SSeq_tsv2vcf.py to 755 2022-05-04T06:57:17,707 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/concat.py to 755 2022-05-04T06:57:17,708 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/linguistic_sequence_complexity.py to 755 2022-05-04T06:57:17,710 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/somatic_xgboost.py to 755 2022-05-04T06:57:17,711 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/ada_model_builder_ntChange.R to 755 2022-05-04T06:57:17,712 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/single_sample_vcf2tsv.py to 755 2022-05-04T06:57:17,713 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/split_Bed_into_equal_regions.py to 755 2022-05-04T06:57:17,714 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/paired_end_bam2fastq.py to 755 2022-05-04T06:57:17,716 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/makeSomaticScripts.py to 755 2022-05-04T06:57:17,716 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/tally_variants_from_multiple_vcfs.py to 755 2022-05-04T06:57:17,717 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/run_somaticseq.py to 755 2022-05-04T06:57:17,718 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/somatic_vcf2tsv.py to 755 2022-05-04T06:57:17,719 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/lociCounterWithLabels.py to 755 2022-05-04T06:57:17,719 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/ada_model_predictor.R to 755 2022-05-04T06:57:17,720 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/makeAlignmentScripts.py to 755 2022-05-04T06:57:17,721 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/remove_callers_from_somaticseq_tsv.py to 755 2022-05-04T06:57:17,721 changing mode of build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.data/scripts/variant_annotation.py to 755 2022-05-04T06:57:17,769 creating build/bdist.linux-armv7l/wheel/somaticseq-3.7.3.dist-info/WHEEL 2022-05-04T06:57:18,606 Building wheel for somaticseq (setup.py): finished with status 'done' 2022-05-04T06:57:18,614 Created wheel for somaticseq: filename=somaticseq-3.7.3-py3-none-any.whl size=229587 sha256=ffd2a113ca4746e6d200ae746559246271776a2dd38b2af16327199d91bf9ea1 2022-05-04T06:57:18,615 Stored in directory: /tmp/pip-ephem-wheel-cache-tys5fj9y/wheels/47/1c/07/76240c0c2b274a5af54c399ea28a902c74cfc8c494f20a9d67 2022-05-04T06:57:18,643 Successfully built somaticseq 2022-05-04T06:57:18,686 Removed build tracker: '/tmp/pip-req-tracker-r4kxzdgm'