2022-05-06T15:26:14,793 Created temporary directory: /tmp/pip-ephem-wheel-cache-djujzdx4 2022-05-06T15:26:14,798 Created temporary directory: /tmp/pip-req-tracker-xueps5i2 2022-05-06T15:26:14,799 Initialized build tracking at /tmp/pip-req-tracker-xueps5i2 2022-05-06T15:26:14,799 Created build tracker: /tmp/pip-req-tracker-xueps5i2 2022-05-06T15:26:14,800 Entered build tracker: /tmp/pip-req-tracker-xueps5i2 2022-05-06T15:26:14,801 Created temporary directory: /tmp/pip-wheel-x_nej5nw 2022-05-06T15:26:14,869 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-06T15:26:14,877 2 location(s) to search for versions of acanthophis: 2022-05-06T15:26:14,877 * https://pypi.org/simple/acanthophis/ 2022-05-06T15:26:14,877 * https://www.piwheels.org/simple/acanthophis/ 2022-05-06T15:26:14,878 Fetching project page and analyzing links: https://pypi.org/simple/acanthophis/ 2022-05-06T15:26:14,879 Getting page https://pypi.org/simple/acanthophis/ 2022-05-06T15:26:14,882 Found index url https://pypi.org/simple 2022-05-06T15:26:15,009 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/ea/b6/42a0a63adb932c29855f6cba7c74de1755b26ea6d7598cdd6167af26d56c/acanthophis-0.1.3-py3-none-any.whl#sha256=09c1e4a20302228311ec38d255d81c9d9efc9dfcc0eed69bbe3fe7ffd51b155a (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,011 Found link https://files.pythonhosted.org/packages/80/c5/62c14c4b84e50f2eb9d2bdb916342b044a4d8520f411cbd0a7dff6492688/acanthophis-0.1.3.tar.gz#sha256=44465eefbba92dc975274bcfdaf6415702412e9e0310d92fa3d579aef7517a0e (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.3 2022-05-06T15:26:15,012 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/ff/73/f66bb4966b886c3af80c105112b32e26b99ebe4ae228b53f4c3696523f14/acanthophis-0.1.4-py3-none-any.whl#sha256=88587432585e62432ca7439b686d03dba3dfd4f2135e466dfe94a3509334c642 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,013 Found link https://files.pythonhosted.org/packages/a3/f6/34b71f98350066d5ead5e92488452d4cc0ef249f1945cff5dd69dea3efe9/acanthophis-0.1.4.tar.gz#sha256=15c50bc7e06b8ab4aedbd39b8cd8571cef7ac3440590d8cd54e3d122e0728c39 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.4 2022-05-06T15:26:15,014 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/4c/61/34e81ead6c5d899412bbd9c34876aa6a902774cd8abda4396a9e4f311a6d/acanthophis-0.1.6-py3-none-any.whl#sha256=49ce23f4f2b61a8c2252956055345ef2934bae8f67035c1b6b01a798a870fff7 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,015 Found link https://files.pythonhosted.org/packages/78/fe/f8104d0a136a3693d4a7fb774e2903cbf6a8f9205c70e6ef3a81bceaa5e7/acanthophis-0.1.6.tar.gz#sha256=1f5adf1741c8b5b6fe53be5f024d470f62576745bff418a70ef51c6d0025c5ad (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.6 2022-05-06T15:26:15,016 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/1c/25/a1456f153415ee06fbe6b5bcb0f480eab73e2a49d0d921856a846d4211c8/acanthophis-0.1.10-py3-none-any.whl#sha256=b32fd62375f477176d30516956c863fa7b02aee7fe4a91284e107a1826705c09 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,017 Found link https://files.pythonhosted.org/packages/f1/86/f6cd26ed2733dd433a17556c0e51e6c76cc6f1ffba8665df088ac4524dea/acanthophis-0.1.10.tar.gz#sha256=14286410cbb06642cccd792043dc9732edca964af6ceb1957e32d1e01b25fb98 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.10 2022-05-06T15:26:15,018 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/d2/8b/7292d98eb0c408b82d2ee8fefbb30cda765e124c305767948e9fb649f28d/acanthophis-0.1.12-py2.py3-none-any.whl#sha256=b7492826c625e3de37abe93861d12b66310778be8df7356f7aed1b38397a59f3 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,019 Found link https://files.pythonhosted.org/packages/f8/90/d0d55f09f5991a52dc0eb4703a8a6281ce121215cbdaa5e7b8463b6b25fa/acanthophis-0.1.12.tar.gz#sha256=c957a5b37abee69bfcfc66d1339d5991d33ecbd01d7363041470feed21a55d04 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.12 2022-05-06T15:26:15,020 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/21/87/347d55e8299283fe68b06b41d227ae42d4dc4332024f941aa661cafdab56/acanthophis-0.1.13-py2.py3-none-any.whl#sha256=1e4dfff5cfa7cda756ad5cbccf381b11127402103f25d170588fe9b79fa0db01 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,021 Found link https://files.pythonhosted.org/packages/e8/44/1ee77a92a8c68c3b2fbc3bb6882e3cb5bcc049cc982642d1e83158a04cf3/acanthophis-0.1.13.tar.gz#sha256=8396d41c43015381ba6b459ec3ea428921842e695f44361dffc69294ec365433 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.13 2022-05-06T15:26:15,022 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/8e/bc/11cc44ab719e214d6acb6ea4c202c385ea286fd9218cc1989442b3b6aa0d/acanthophis-0.1.14-py2.py3-none-any.whl#sha256=f43892516b7ad6d18cba8d1d0a4d74235d1f29875612eaab35f435401ace9b42 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,023 Found link https://files.pythonhosted.org/packages/35/d5/df0077fabb3305e8f4def77ab220e323cce945f7c0dacf90c9077359f00a/acanthophis-0.1.14.tar.gz#sha256=4bc89f00f6767a129022c03d45a9b776e862fc027f218f974a1e39e653a03e31 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.14 2022-05-06T15:26:15,024 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/f6/83/0eb51fcbeae3db758f149c44426a8eb1f8b5b0d99b15230c9733fe23e70e/acanthophis-0.1.15-py2.py3-none-any.whl#sha256=3a47b454d28c4e3e362eb4842dbca565422bd664ac940340a5e0168c56bad6ed (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,025 Found link https://files.pythonhosted.org/packages/c9/b9/5781fcd9fd96160a028f1a5a1c33418f7fceb96597ce598fb14b2f26fdeb/acanthophis-0.1.15.tar.gz#sha256=96b88b76dc0a61fb1c1c5104ed62ea96e8ece2481f936fe7195e15a0242d9f79 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.15 2022-05-06T15:26:15,026 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/b8/67/664ee1db3ec51bca7bba6ec972d31c5cc7785ae9364f5d515dbe52a75628/acanthophis-0.1.16-py2.py3-none-any.whl#sha256=9143c0bf1f47849aeea5ea0acfeb549cfb4185c062468fe3eaa7ce01592c13fc (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,027 Found link https://files.pythonhosted.org/packages/48/9f/ddb0ab497ce688d728130b85542bd73ff8d8714743a20211714b8b86acd4/acanthophis-0.1.16.tar.gz#sha256=755bbe419b06db49fa6185ae7155ddc8fa93fc4e16de1f240f101745046dccc1 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.16 2022-05-06T15:26:15,028 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/ab/7f/c73bf764df28b18cfe12ded91dae0c5e1ce130fab1db9db5bf949cd1cb58/acanthophis-0.1.17-py2.py3-none-any.whl#sha256=aed1549cf3cf8fb517352f1cd9a17a127a79b7fd885d64f22e1ee2393c93ff05 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,029 Found link https://files.pythonhosted.org/packages/43/13/564304db3e4bdc51d514686fb9996d276fdbe39fd01ccf0104fdaf907d1e/acanthophis-0.1.17.tar.gz#sha256=d4bed6bb825539abf8dcab2182fa0cd565515e15f723000ee0b01382be7268b9 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.1.17 2022-05-06T15:26:15,030 Skipping link: No binaries permitted for acanthophis: https://files.pythonhosted.org/packages/ff/50/0e90ea7df6bb71c6effa7ea93e34ce62c2fdbae7468f8563af5040f64a19/acanthophis-0.2.0-py2.py3-none-any.whl#sha256=cd312630e11ea964981272c906d33a7e185ac3d60e2bb4eb5d53b291257f1ab1 (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,031 Found link https://files.pythonhosted.org/packages/34/78/664003d7581ef10019fcf1e74b77819c723f6a5d8717db3122f93c6d8706/acanthophis-0.2.0.tar.gz#sha256=2921aab4ae55aede0f8aaf5e85cff3a68e26a3e176e083be568099e3f88c368c (from https://pypi.org/simple/acanthophis/) (requires-python:>=3.7), version: 0.2.0 2022-05-06T15:26:15,032 Fetching project page and analyzing links: https://www.piwheels.org/simple/acanthophis/ 2022-05-06T15:26:15,033 Getting page https://www.piwheels.org/simple/acanthophis/ 2022-05-06T15:26:15,035 Found index url https://www.piwheels.org/simple 2022-05-06T15:26:15,243 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.17-py2.py3-none-any.whl#sha256=223387c5c11ac35e1059c3da5417b0332268654b79704c9eacf6dbb8ad2b2bfc (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,244 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.16-py2.py3-none-any.whl#sha256=098afaac7a7f964384b67ad7f35ec4e197c0ce478071d908c352298d58881b10 (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,244 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.15-py2.py3-none-any.whl#sha256=1fafa489f523834f5ca2a6b8b47e32775a2da8f48ef62231179f57389ec11547 (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,245 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.14-py2.py3-none-any.whl#sha256=f43892516b7ad6d18cba8d1d0a4d74235d1f29875612eaab35f435401ace9b42 (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,245 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.13-py2.py3-none-any.whl#sha256=1e4dfff5cfa7cda756ad5cbccf381b11127402103f25d170588fe9b79fa0db01 (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,246 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.12-py2.py3-none-any.whl#sha256=b7492826c625e3de37abe93861d12b66310778be8df7356f7aed1b38397a59f3 (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,246 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.10-py3-none-any.whl#sha256=b32fd62375f477176d30516956c863fa7b02aee7fe4a91284e107a1826705c09 (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,247 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.6-py3-none-any.whl#sha256=49ce23f4f2b61a8c2252956055345ef2934bae8f67035c1b6b01a798a870fff7 (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,247 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.4-py3-none-any.whl#sha256=88587432585e62432ca7439b686d03dba3dfd4f2135e466dfe94a3509334c642 (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,247 Skipping link: No binaries permitted for acanthophis: https://www.piwheels.org/simple/acanthophis/acanthophis-0.1.3-py3-none-any.whl#sha256=09c1e4a20302228311ec38d255d81c9d9efc9dfcc0eed69bbe3fe7ffd51b155a (from https://www.piwheels.org/simple/acanthophis/) (requires-python:>=3.7) 2022-05-06T15:26:15,248 Skipping link: not a file: https://www.piwheels.org/simple/acanthophis/ 2022-05-06T15:26:15,248 Skipping link: not a file: https://pypi.org/simple/acanthophis/ 2022-05-06T15:26:15,286 Given no hashes to check 1 links for project 'acanthophis': discarding no candidates 2022-05-06T15:26:15,317 Collecting acanthophis==0.2.0 2022-05-06T15:26:15,321 Created temporary directory: /tmp/pip-unpack-6_ic0jf2 2022-05-06T15:26:15,845 Downloading acanthophis-0.2.0.tar.gz (276 kB) 2022-05-06T15:26:16,315 Added acanthophis==0.2.0 from https://files.pythonhosted.org/packages/34/78/664003d7581ef10019fcf1e74b77819c723f6a5d8717db3122f93c6d8706/acanthophis-0.2.0.tar.gz#sha256=2921aab4ae55aede0f8aaf5e85cff3a68e26a3e176e083be568099e3f88c368c to build tracker '/tmp/pip-req-tracker-xueps5i2' 2022-05-06T15:26:16,333 Created temporary directory: /tmp/pip-build-env-gfr4blp2 2022-05-06T15:26:16,347 Created temporary directory: /tmp/pip-standalone-pip-8e2ctkkp 2022-05-06T15:26:18,644 Installing build dependencies: started 2022-05-06T15:26:18,647 Running command pip subprocess to install build dependencies 2022-05-06T15:26:28,838 Using pip 22.0.4 from /tmp/pip-standalone-pip-8e2ctkkp/__env_pip__.zip/pip (python 3.7) 2022-05-06T15:26:30,512 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-06T15:26:34,466 Collecting setuptools>=48 2022-05-06T15:26:34,720 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.1.0-py3-none-any.whl (1.1 MB) 2022-05-06T15:26:35,662 Collecting setuptools_scm[toml]<6,>=4 2022-05-06T15:26:35,696 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-5.0.2-py2.py3-none-any.whl (29 kB) 2022-05-06T15:26:35,831 Collecting setuptools_scm_git_archive 2022-05-06T15:26:35,862 Using cached https://www.piwheels.org/simple/setuptools-scm-git-archive/setuptools_scm_git_archive-1.1-py2.py3-none-any.whl (3.3 kB) 2022-05-06T15:26:36,402 Collecting wheel>=0.29.0 2022-05-06T15:26:36,436 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-05-06T15:26:36,643 Collecting toml 2022-05-06T15:26:36,724 Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB) 2022-05-06T15:26:48,941 Installing collected packages: setuptools_scm_git_archive, wheel, toml, setuptools, setuptools_scm 2022-05-06T15:26:49,263 Creating /tmp/pip-build-env-gfr4blp2/overlay/bin 2022-05-06T15:26:49,267 changing mode of /tmp/pip-build-env-gfr4blp2/overlay/bin/wheel to 755 2022-05-06T15:26:54,066 Successfully installed setuptools-62.1.0 setuptools_scm-5.0.2 setuptools_scm_git_archive-1.1 toml-0.10.2 wheel-0.37.1 2022-05-06T15:26:54,780 Installing build dependencies: finished with status 'done' 2022-05-06T15:26:54,814 Getting requirements to build wheel: started 2022-05-06T15:26:54,816 Running command Getting requirements to build wheel 2022-05-06T15:26:56,444 Getting requirements to build wheel: finished with status 'done' 2022-05-06T15:26:56,475 Created temporary directory: /tmp/pip-modern-metadata-70c9tdam 2022-05-06T15:26:56,480 Preparing metadata (pyproject.toml): started 2022-05-06T15:26:56,482 Running command Preparing metadata (pyproject.toml) 2022-05-06T15:26:58,314 running dist_info 2022-05-06T15:26:58,346 creating /tmp/pip-modern-metadata-70c9tdam/acanthophis.egg-info 2022-05-06T15:26:58,359 writing manifest file '/tmp/pip-modern-metadata-70c9tdam/acanthophis.egg-info/SOURCES.txt' 2022-05-06T15:26:58,458 warning: no files found matching 'acanthophis/profiles/**' 2022-05-06T15:26:58,466 writing manifest file '/tmp/pip-modern-metadata-70c9tdam/acanthophis.egg-info/SOURCES.txt' 2022-05-06T15:26:58,734 Preparing metadata (pyproject.toml): finished with status 'done' 2022-05-06T15:26:58,748 Source in /tmp/pip-wheel-x_nej5nw/acanthophis_1732f45231e54f9fa8e3b9271d430ca6 has version 0.2.0, which satisfies requirement acanthophis==0.2.0 from https://files.pythonhosted.org/packages/34/78/664003d7581ef10019fcf1e74b77819c723f6a5d8717db3122f93c6d8706/acanthophis-0.2.0.tar.gz#sha256=2921aab4ae55aede0f8aaf5e85cff3a68e26a3e176e083be568099e3f88c368c 2022-05-06T15:26:58,750 Removed acanthophis==0.2.0 from https://files.pythonhosted.org/packages/34/78/664003d7581ef10019fcf1e74b77819c723f6a5d8717db3122f93c6d8706/acanthophis-0.2.0.tar.gz#sha256=2921aab4ae55aede0f8aaf5e85cff3a68e26a3e176e083be568099e3f88c368c from build tracker '/tmp/pip-req-tracker-xueps5i2' 2022-05-06T15:26:58,765 Created temporary directory: /tmp/pip-unpack-8eie8zl7 2022-05-06T15:26:58,766 Building wheels for collected packages: acanthophis 2022-05-06T15:26:58,775 Created temporary directory: /tmp/pip-wheel-mxj_45wx 2022-05-06T15:26:58,775 Destination directory: /tmp/pip-wheel-mxj_45wx 2022-05-06T15:26:58,780 Building wheel for acanthophis (pyproject.toml): started 2022-05-06T15:26:58,782 Running command Building wheel for acanthophis (pyproject.toml) 2022-05-06T15:27:00,684 running bdist_wheel 2022-05-06T15:27:01,113 running build 2022-05-06T15:27:01,114 running build_py 2022-05-06T15:27:01,123 creating build 2022-05-06T15:27:01,124 creating build/lib 2022-05-06T15:27:01,125 creating build/lib/acanthophis 2022-05-06T15:27:01,128 copying acanthophis/__init__.py -> build/lib/acanthophis 2022-05-06T15:27:01,133 copying acanthophis/_version.py -> build/lib/acanthophis 2022-05-06T15:27:01,136 copying acanthophis/cmd.py -> build/lib/acanthophis 2022-05-06T15:27:01,139 running egg_info 2022-05-06T15:27:01,273 warning: no files found matching 'acanthophis/profiles/**' 2022-05-06T15:27:01,285 writing manifest file 'acanthophis.egg-info/SOURCES.txt' 2022-05-06T15:27:01,302 creating build/lib/acanthophis/envs 2022-05-06T15:27:01,304 copying acanthophis/envs/abra2.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,308 copying acanthophis/envs/align.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,312 copying acanthophis/envs/global.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,317 copying acanthophis/envs/kraken.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,321 copying acanthophis/envs/qcstats.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,325 copying acanthophis/envs/qualimap.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,329 copying acanthophis/envs/reads.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,333 copying acanthophis/envs/snpeff.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,337 copying acanthophis/envs/varcall.yml -> build/lib/acanthophis/envs 2022-05-06T15:27:01,340 creating build/lib/acanthophis/profiles 2022-05-06T15:27:01,341 creating build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,343 copying acanthophis/profiles/ebio-cluster/README.md -> build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,347 copying acanthophis/profiles/ebio-cluster/cluster.yml -> build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,350 copying acanthophis/profiles/ebio-cluster/config.yaml -> build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,354 copying acanthophis/profiles/ebio-cluster/jobscript.sh -> build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,357 copying acanthophis/profiles/ebio-cluster/jobstatus -> build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,361 copying acanthophis/profiles/ebio-cluster/jobsubmit -> build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,365 copying acanthophis/profiles/ebio-cluster/run.job -> build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,369 copying acanthophis/profiles/ebio-cluster/submit.sh -> build/lib/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,372 creating build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,374 copying acanthophis/profiles/gadi.nci.org.au/README.md -> build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,378 copying acanthophis/profiles/gadi.nci.org.au/cluster.yml -> build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,381 copying acanthophis/profiles/gadi.nci.org.au/config.yaml -> build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,385 copying acanthophis/profiles/gadi.nci.org.au/jobscript.sh -> build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,389 copying acanthophis/profiles/gadi.nci.org.au/jobstatus -> build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,393 copying acanthophis/profiles/gadi.nci.org.au/jobsubmit -> build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,396 copying acanthophis/profiles/gadi.nci.org.au/run.job -> build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,400 copying acanthophis/profiles/gadi.nci.org.au/submit.sh -> build/lib/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,404 creating build/lib/acanthophis/rules 2022-05-06T15:27:01,405 copying acanthophis/rules/align.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,410 copying acanthophis/rules/base.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,413 copying acanthophis/rules/denovo.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,417 copying acanthophis/rules/gatk.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,421 copying acanthophis/rules/kraken.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,425 copying acanthophis/rules/multiqc.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,428 copying acanthophis/rules/qualimap.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,432 copying acanthophis/rules/reads.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,437 copying acanthophis/rules/varcall.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,441 copying acanthophis/rules/variantannotation.rules -> build/lib/acanthophis/rules 2022-05-06T15:27:01,445 creating build/lib/acanthophis/template 2022-05-06T15:27:01,446 copying acanthophis/template/Snakefile -> build/lib/acanthophis/template 2022-05-06T15:27:01,450 copying acanthophis/template/config.yml -> build/lib/acanthophis/template 2022-05-06T15:27:01,454 copying acanthophis/template/environment.yml -> build/lib/acanthophis/template 2022-05-06T15:27:01,458 creating build/lib/acanthophis/template/rawdata 2022-05-06T15:27:01,459 copying acanthophis/template/rawdata/adapters.txt -> build/lib/acanthophis/template/rawdata 2022-05-06T15:27:01,484 running install 2022-05-06T15:27:01,547 running install_lib 2022-05-06T15:27:01,554 creating build/bdist.linux-armv7l 2022-05-06T15:27:01,554 creating build/bdist.linux-armv7l/wheel 2022-05-06T15:27:01,558 creating build/bdist.linux-armv7l/wheel/acanthophis 2022-05-06T15:27:01,561 creating build/bdist.linux-armv7l/wheel/acanthophis/envs 2022-05-06T15:27:01,603 creating build/bdist.linux-armv7l/wheel/acanthophis/template 2022-05-06T15:27:01,616 creating build/bdist.linux-armv7l/wheel/acanthophis/template/rawdata 2022-05-06T15:27:01,623 creating build/bdist.linux-armv7l/wheel/acanthophis/rules 2022-05-06T15:27:01,662 creating build/bdist.linux-armv7l/wheel/acanthophis/profiles 2022-05-06T15:27:01,664 creating build/bdist.linux-armv7l/wheel/acanthophis/profiles/gadi.nci.org.au 2022-05-06T15:27:01,691 creating build/bdist.linux-armv7l/wheel/acanthophis/profiles/ebio-cluster 2022-05-06T15:27:01,715 running install_egg_info 2022-05-06T15:27:01,724 Copying acanthophis.egg-info to build/bdist.linux-armv7l/wheel/acanthophis-0.2.0-py3.7.egg-info 2022-05-06T15:27:01,741 running install_scripts 2022-05-06T15:27:02,235 Building wheel for acanthophis (pyproject.toml): finished with status 'done' 2022-05-06T15:27:02,249 Created wheel for acanthophis: filename=acanthophis-0.2.0-py2.py3-none-any.whl size=39682 sha256=8e7e56995023755eac7790a7d354295ceebe49cfa33aa17e3263ac6a73708eee 2022-05-06T15:27:02,251 Stored in directory: /tmp/pip-ephem-wheel-cache-djujzdx4/wheels/fd/b6/05/6994e99121196b9fd20bc11aa3c6c939f49d43ace10986a3f0 2022-05-06T15:27:02,276 Successfully built acanthophis 2022-05-06T15:27:02,285 Removed build tracker: '/tmp/pip-req-tracker-xueps5i2'