2022-05-08T11:07:50,973 Created temporary directory: /tmp/pip-ephem-wheel-cache-d2fdmohz 2022-05-08T11:07:50,979 Created temporary directory: /tmp/pip-req-tracker-gkrzw57s 2022-05-08T11:07:50,979 Initialized build tracking at /tmp/pip-req-tracker-gkrzw57s 2022-05-08T11:07:50,980 Created build tracker: /tmp/pip-req-tracker-gkrzw57s 2022-05-08T11:07:50,980 Entered build tracker: /tmp/pip-req-tracker-gkrzw57s 2022-05-08T11:07:50,981 Created temporary directory: /tmp/pip-wheel-fjtuj_nj 2022-05-08T11:07:51,050 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-08T11:07:51,059 2 location(s) to search for versions of pypulchra: 2022-05-08T11:07:51,059 * https://pypi.org/simple/pypulchra/ 2022-05-08T11:07:51,059 * https://www.piwheels.org/simple/pypulchra/ 2022-05-08T11:07:51,060 Fetching project page and analyzing links: https://pypi.org/simple/pypulchra/ 2022-05-08T11:07:51,061 Getting page https://pypi.org/simple/pypulchra/ 2022-05-08T11:07:51,064 Found index url https://pypi.org/simple 2022-05-08T11:07:51,178 Found link https://files.pythonhosted.org/packages/f1/f9/07629a442c8da5001399ee88eb46f4b233b0ce71cc6c2b1a085c88805179/pypulchra-1.0.0.tar.gz#sha256=cb4e3ca63482db276a08c322f6a0b3aa1d201124b3b670bd7a73a1004fdc2d22 (from https://pypi.org/simple/pypulchra/) (requires-python:>=3.7), version: 1.0.0 2022-05-08T11:07:51,180 Found link https://files.pythonhosted.org/packages/c7/60/4c39e247bd18cb845ffc8f55f3021a55db0b0ba8e3e481b4a4d641868fb4/pypulchra-1.0.1.tar.gz#sha256=b06a1ec08a49fb3d943206feacf7fcbf30d43ed5aff42e7f7d7efe9cf92c8327 (from https://pypi.org/simple/pypulchra/) (requires-python:>=3.7), version: 1.0.1 2022-05-08T11:07:51,181 Fetching project page and analyzing links: https://www.piwheels.org/simple/pypulchra/ 2022-05-08T11:07:51,181 Getting page https://www.piwheels.org/simple/pypulchra/ 2022-05-08T11:07:51,183 Found index url https://www.piwheels.org/simple 2022-05-08T11:07:51,393 Skipping link: No binaries permitted for pypulchra: https://www.piwheels.org/simple/pypulchra/pypulchra-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=dd6c53f28a2abfdf39df68c00333a7e734f66ef9d486ac1f6f2a1737c476afb8 (from https://www.piwheels.org/simple/pypulchra/) (requires-python:>=3.7) 2022-05-08T11:07:51,394 Skipping link: No binaries permitted for pypulchra: https://www.piwheels.org/simple/pypulchra/pypulchra-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=dd6c53f28a2abfdf39df68c00333a7e734f66ef9d486ac1f6f2a1737c476afb8 (from https://www.piwheels.org/simple/pypulchra/) (requires-python:>=3.7) 2022-05-08T11:07:51,394 Skipping link: No binaries permitted for pypulchra: https://www.piwheels.org/simple/pypulchra/pypulchra-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0470a8e044d39160d887c99766465e6c35ade8688d0c457e37ae37ce03b85472 (from https://www.piwheels.org/simple/pypulchra/) (requires-python:>=3.7) 2022-05-08T11:07:51,395 Skipping link: No binaries permitted for pypulchra: https://www.piwheels.org/simple/pypulchra/pypulchra-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0470a8e044d39160d887c99766465e6c35ade8688d0c457e37ae37ce03b85472 (from https://www.piwheels.org/simple/pypulchra/) (requires-python:>=3.7) 2022-05-08T11:07:51,395 Skipping link: No binaries permitted for pypulchra: https://www.piwheels.org/simple/pypulchra/pypulchra-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=021994ea82be3c4909986db98b8c49e8149b7b4c033c1963bfd0232adf248683 (from https://www.piwheels.org/simple/pypulchra/) (requires-python:>=3.7) 2022-05-08T11:07:51,396 Skipping link: No binaries permitted for pypulchra: https://www.piwheels.org/simple/pypulchra/pypulchra-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=021994ea82be3c4909986db98b8c49e8149b7b4c033c1963bfd0232adf248683 (from https://www.piwheels.org/simple/pypulchra/) (requires-python:>=3.7) 2022-05-08T11:07:51,396 Skipping link: not a file: https://www.piwheels.org/simple/pypulchra/ 2022-05-08T11:07:51,397 Skipping link: not a file: https://pypi.org/simple/pypulchra/ 2022-05-08T11:07:51,441 Given no hashes to check 1 links for project 'pypulchra': discarding no candidates 2022-05-08T11:07:51,484 Collecting pypulchra==1.0.1 2022-05-08T11:07:51,488 Created temporary directory: /tmp/pip-unpack-7k20st20 2022-05-08T11:07:51,591 Downloading pypulchra-1.0.1.tar.gz (1.9 MB) 2022-05-08T11:07:52,793 Added pypulchra==1.0.1 from https://files.pythonhosted.org/packages/c7/60/4c39e247bd18cb845ffc8f55f3021a55db0b0ba8e3e481b4a4d641868fb4/pypulchra-1.0.1.tar.gz#sha256=b06a1ec08a49fb3d943206feacf7fcbf30d43ed5aff42e7f7d7efe9cf92c8327 to build tracker '/tmp/pip-req-tracker-gkrzw57s' 2022-05-08T11:07:52,804 Created temporary directory: /tmp/pip-build-env-l2jxre4a 2022-05-08T11:07:52,826 Created temporary directory: /tmp/pip-standalone-pip-3zdhg2bm 2022-05-08T11:07:55,067 Installing build dependencies: started 2022-05-08T11:07:55,069 Running command pip subprocess to install build dependencies 2022-05-08T11:08:06,764 Using pip 22.0.4 from /tmp/pip-standalone-pip-3zdhg2bm/__env_pip__.zip/pip (python 3.9) 2022-05-08T11:08:08,394 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-08T11:08:12,274 Collecting setuptools>=42 2022-05-08T11:08:12,528 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.1.0-py3-none-any.whl (1.1 MB) 2022-05-08T11:08:13,180 Collecting wheel 2022-05-08T11:08:13,213 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-05-08T11:08:13,640 Collecting pybind11>=2.8.0 2022-05-08T11:08:13,710 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.9.2-py2.py3-none-any.whl (213 kB) 2022-05-08T11:08:20,253 Installing collected packages: wheel, setuptools, pybind11 2022-05-08T11:08:20,538 Creating /tmp/pip-build-env-l2jxre4a/overlay/bin 2022-05-08T11:08:20,543 changing mode of /tmp/pip-build-env-l2jxre4a/overlay/bin/wheel to 755 2022-05-08T11:08:25,589 changing mode of /tmp/pip-build-env-l2jxre4a/overlay/bin/pybind11-config to 755 2022-05-08T11:08:25,622 Successfully installed pybind11-2.9.2 setuptools-62.1.0 wheel-0.37.1 2022-05-08T11:08:26,324 Installing build dependencies: finished with status 'done' 2022-05-08T11:08:26,350 Getting requirements to build wheel: started 2022-05-08T11:08:26,352 Running command Getting requirements to build wheel 2022-05-08T11:08:28,495 running egg_info 2022-05-08T11:08:28,549 writing manifest file 'pypulchra.egg-info/SOURCES.txt' 2022-05-08T11:08:28,688 Getting requirements to build wheel: finished with status 'done' 2022-05-08T11:08:28,709 Created temporary directory: /tmp/pip-modern-metadata-ngj9eeod 2022-05-08T11:08:28,715 Preparing metadata (pyproject.toml): started 2022-05-08T11:08:28,717 Running command Preparing metadata (pyproject.toml) 2022-05-08T11:08:30,794 running dist_info 2022-05-08T11:08:30,823 creating /tmp/pip-modern-metadata-ngj9eeod/pypulchra.egg-info 2022-05-08T11:08:30,838 writing manifest file '/tmp/pip-modern-metadata-ngj9eeod/pypulchra.egg-info/SOURCES.txt' 2022-05-08T11:08:30,869 writing manifest file '/tmp/pip-modern-metadata-ngj9eeod/pypulchra.egg-info/SOURCES.txt' 2022-05-08T11:08:31,128 Preparing metadata (pyproject.toml): finished with status 'done' 2022-05-08T11:08:31,142 Source in /tmp/pip-wheel-fjtuj_nj/pypulchra_2c7b68d579374759b94d136c0d251dff has version 1.0.1, which satisfies requirement pypulchra==1.0.1 from https://files.pythonhosted.org/packages/c7/60/4c39e247bd18cb845ffc8f55f3021a55db0b0ba8e3e481b4a4d641868fb4/pypulchra-1.0.1.tar.gz#sha256=b06a1ec08a49fb3d943206feacf7fcbf30d43ed5aff42e7f7d7efe9cf92c8327 2022-05-08T11:08:31,144 Removed pypulchra==1.0.1 from https://files.pythonhosted.org/packages/c7/60/4c39e247bd18cb845ffc8f55f3021a55db0b0ba8e3e481b4a4d641868fb4/pypulchra-1.0.1.tar.gz#sha256=b06a1ec08a49fb3d943206feacf7fcbf30d43ed5aff42e7f7d7efe9cf92c8327 from build tracker '/tmp/pip-req-tracker-gkrzw57s' 2022-05-08T11:08:31,158 Created temporary directory: /tmp/pip-unpack-mstjeudh 2022-05-08T11:08:31,159 Building wheels for collected packages: pypulchra 2022-05-08T11:08:31,168 Created temporary directory: /tmp/pip-wheel-au2dra91 2022-05-08T11:08:31,169 Destination directory: /tmp/pip-wheel-au2dra91 2022-05-08T11:08:31,174 Building wheel for pypulchra (pyproject.toml): started 2022-05-08T11:08:31,176 Running command Building wheel for pypulchra (pyproject.toml) 2022-05-08T11:08:33,308 running bdist_wheel 2022-05-08T11:08:33,316 running build 2022-05-08T11:08:33,317 running build_py 2022-05-08T11:08:33,324 creating build 2022-05-08T11:08:33,325 creating build/lib.linux-armv7l-3.9 2022-05-08T11:08:33,326 creating build/lib.linux-armv7l-3.9/pypulchra 2022-05-08T11:08:33,328 copying pypulchra/__init__.py -> build/lib.linux-armv7l-3.9/pypulchra 2022-05-08T11:08:33,332 running build_ext 2022-05-08T11:08:33,341 creating build/temp.linux-armv7l-3.9 2022-05-08T11:08:33,341 creating build/temp.linux-armv7l-3.9/bindings 2022-05-08T11:08:33,342 creating build/temp.linux-armv7l-3.9/bindings/python 2022-05-08T11:08:33,344 creating build/temp.linux-armv7l-3.9/src 2022-05-08T11:08:33,346 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=1.0.1 -Isrc -I/tmp/pip-build-env-l2jxre4a/overlay/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c bindings/python/pulchra_bindings.cpp -o build/temp.linux-armv7l-3.9/bindings/python/pulchra_bindings.o -fvisibility=hidden -g0 -std=c++14 -static 2022-05-08T11:08:37,582 In file included from bindings/python/pulchra_bindings.cpp:5: 2022-05-08T11:08:37,582 src/pulchra.hpp: In member function ‘int pulchra::Pulchra::read_pdb_buffer(std::stringstream&, std::shared_ptr)’: 2022-05-08T11:08:37,583 src/pulchra.hpp:653:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2022-05-08T11:08:37,583 653 | res->type = AA_NUMS[pusetseq(resname)]; 2022-05-08T11:08:37,584 | ~~~~~~~~^~~~~~~~~ 2022-05-08T11:08:37,599 src/pulchra.hpp:594:8: warning: variable ‘version’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,600 594 | char version; 2022-05-08T11:08:37,600 | ^~~~~~~ 2022-05-08T11:08:37,600 src/pulchra.hpp:595:46: warning: unused variable ‘num’ [-Wunused-variable] 2022-05-08T11:08:37,601 595 | int prevresnum, resnum, atmnum, locatmnum, num, locnum = 0, i, j; 2022-05-08T11:08:37,601 | ^~~ 2022-05-08T11:08:37,601 src/pulchra.hpp:595:63: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,602 595 | int prevresnum, resnum, atmnum, locatmnum, num, locnum = 0, i, j; 2022-05-08T11:08:37,602 | ^ 2022-05-08T11:08:37,602 src/pulchra.hpp:595:66: warning: unused variable ‘j’ [-Wunused-variable] 2022-05-08T11:08:37,603 595 | int prevresnum, resnum, atmnum, locatmnum, num, locnum = 0, i, j; 2022-05-08T11:08:37,603 | ^ 2022-05-08T11:08:37,603 src/pulchra.hpp:597:14: warning: unused variable ‘cc’ [-Wunused-variable] 2022-05-08T11:08:37,603 597 | int sgnum, cc, nres, ok, natom; 2022-05-08T11:08:37,604 | ^~ 2022-05-08T11:08:37,604 src/pulchra.hpp:597:18: warning: unused variable ‘nres’ [-Wunused-variable] 2022-05-08T11:08:37,605 597 | int sgnum, cc, nres, ok, natom; 2022-05-08T11:08:37,605 | ^~~~ 2022-05-08T11:08:37,605 src/pulchra.hpp:597:24: warning: unused variable ‘ok’ [-Wunused-variable] 2022-05-08T11:08:37,605 597 | int sgnum, cc, nres, ok, natom; 2022-05-08T11:08:37,606 | ^~ 2022-05-08T11:08:37,606 src/pulchra.hpp:597:28: warning: unused variable ‘natom’ [-Wunused-variable] 2022-05-08T11:08:37,606 597 | int sgnum, cc, nres, ok, natom; 2022-05-08T11:08:37,607 | ^~~~~ 2022-05-08T11:08:37,607 src/pulchra.hpp:602:10: warning: unused variable ‘dist’ [-Wunused-variable] 2022-05-08T11:08:37,607 602 | double dist; 2022-05-08T11:08:37,608 | ^~~~ 2022-05-08T11:08:37,608 src/pulchra.hpp:603:17: warning: unused variable ‘bin’ [-Wunused-variable] 2022-05-08T11:08:37,608 603 | unsigned char bin; 2022-05-08T11:08:37,609 | ^~~ 2022-05-08T11:08:37,609 src/pulchra.hpp:604:7: warning: variable ‘warn’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,609 604 | int warn = 0; 2022-05-08T11:08:37,610 | ^~~~ 2022-05-08T11:08:37,610 src/pulchra.hpp:605:10: warning: unused variable ‘cutoff’ [-Wunused-variable] 2022-05-08T11:08:37,610 605 | double cutoff; 2022-05-08T11:08:37,611 | ^~~~~~ 2022-05-08T11:08:37,646 src/pulchra.hpp: In member function ‘double pulchra::Pulchra::calc_ca_energy(const std::vector >&, double**, double**, double**, double, double*, bool, int)’: 2022-05-08T11:08:37,647 src/pulchra.hpp:775:10: warning: unused variable ‘theta0’ [-Wunused-variable] 2022-05-08T11:08:37,647 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:08:37,647 | ^~~~~~ 2022-05-08T11:08:37,648 src/pulchra.hpp:775:18: warning: unused variable ‘tdif’ [-Wunused-variable] 2022-05-08T11:08:37,648 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:08:37,648 | ^~~~ 2022-05-08T11:08:37,648 src/pulchra.hpp:775:24: warning: unused variable ‘th’ [-Wunused-variable] 2022-05-08T11:08:37,649 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:08:37,649 | ^~ 2022-05-08T11:08:37,649 src/pulchra.hpp:775:28: warning: unused variable ‘aa’ [-Wunused-variable] 2022-05-08T11:08:37,650 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:08:37,650 | ^~ 2022-05-08T11:08:37,650 src/pulchra.hpp:775:32: warning: unused variable ‘bb’ [-Wunused-variable] 2022-05-08T11:08:37,651 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:08:37,651 | ^~ 2022-05-08T11:08:37,651 src/pulchra.hpp:775:36: warning: unused variable ‘ab’ [-Wunused-variable] 2022-05-08T11:08:37,651 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:08:37,652 | ^~ 2022-05-08T11:08:37,652 src/pulchra.hpp:776:10: warning: unused variable ‘ff0’ [-Wunused-variable] 2022-05-08T11:08:37,652 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:08:37,653 | ^~~ 2022-05-08T11:08:37,653 src/pulchra.hpp:776:15: warning: unused variable ‘ff2’ [-Wunused-variable] 2022-05-08T11:08:37,653 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:08:37,653 | ^~~ 2022-05-08T11:08:37,654 src/pulchra.hpp:776:20: warning: unused variable ‘dth’ [-Wunused-variable] 2022-05-08T11:08:37,654 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:08:37,654 | ^~~ 2022-05-08T11:08:37,655 src/pulchra.hpp:776:25: warning: unused variable ‘m0’ [-Wunused-variable] 2022-05-08T11:08:37,655 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:08:37,655 | ^~ 2022-05-08T11:08:37,656 src/pulchra.hpp:776:29: warning: unused variable ‘m2’ [-Wunused-variable] 2022-05-08T11:08:37,656 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:08:37,656 | ^~ 2022-05-08T11:08:37,657 src/pulchra.hpp:776:39: warning: unused variable ‘f0’ [-Wunused-variable] 2022-05-08T11:08:37,657 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:08:37,657 | ^~ 2022-05-08T11:08:37,657 src/pulchra.hpp:776:46: warning: unused variable ‘f2’ [-Wunused-variable] 2022-05-08T11:08:37,658 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:08:37,658 | ^~ 2022-05-08T11:08:37,659 src/pulchra.hpp:777:10: warning: unused variable ‘adiff’ [-Wunused-variable] 2022-05-08T11:08:37,659 777 | double adiff[3], bdiff[3]; 2022-05-08T11:08:37,659 | ^~~~~ 2022-05-08T11:08:37,659 src/pulchra.hpp:777:20: warning: unused variable ‘bdiff’ [-Wunused-variable] 2022-05-08T11:08:37,660 777 | double adiff[3], bdiff[3]; 2022-05-08T11:08:37,660 | ^~~~~ 2022-05-08T11:08:37,660 src/pulchra.hpp:778:10: warning: unused variable ‘deriv’ [-Wunused-variable] 2022-05-08T11:08:37,661 778 | double deriv, theta, dtheta, len1, len2, cos_theta, sin_theta; 2022-05-08T11:08:37,661 | ^~~~~ 2022-05-08T11:08:37,661 src/pulchra.hpp:778:24: warning: unused variable ‘dtheta’ [-Wunused-variable] 2022-05-08T11:08:37,662 778 | double deriv, theta, dtheta, len1, len2, cos_theta, sin_theta; 2022-05-08T11:08:37,662 | ^~~~~~ 2022-05-08T11:08:37,662 src/pulchra.hpp:778:32: warning: unused variable ‘len1’ [-Wunused-variable] 2022-05-08T11:08:37,663 778 | double deriv, theta, dtheta, len1, len2, cos_theta, sin_theta; 2022-05-08T11:08:37,663 | ^~~~ 2022-05-08T11:08:37,663 src/pulchra.hpp:778:38: warning: unused variable ‘len2’ [-Wunused-variable] 2022-05-08T11:08:37,664 778 | double deriv, theta, dtheta, len1, len2, cos_theta, sin_theta; 2022-05-08T11:08:37,664 | ^~~~ 2022-05-08T11:08:37,664 src/pulchra.hpp:779:10: warning: unused variable ‘dx1’ [-Wunused-variable] 2022-05-08T11:08:37,665 779 | double dx1, dy1, dz1; 2022-05-08T11:08:37,665 | ^~~ 2022-05-08T11:08:37,665 src/pulchra.hpp:779:15: warning: unused variable ‘dy1’ [-Wunused-variable] 2022-05-08T11:08:37,666 779 | double dx1, dy1, dz1; 2022-05-08T11:08:37,666 | ^~~ 2022-05-08T11:08:37,666 src/pulchra.hpp:779:20: warning: unused variable ‘dz1’ [-Wunused-variable] 2022-05-08T11:08:37,667 779 | double dx1, dy1, dz1; 2022-05-08T11:08:37,667 | ^~~ 2022-05-08T11:08:37,667 src/pulchra.hpp:780:10: warning: unused variable ‘dx2’ [-Wunused-variable] 2022-05-08T11:08:37,668 780 | double dx2, dy2, dz2; 2022-05-08T11:08:37,668 | ^~~ 2022-05-08T11:08:37,668 src/pulchra.hpp:780:15: warning: unused variable ‘dy2’ [-Wunused-variable] 2022-05-08T11:08:37,668 780 | double dx2, dy2, dz2; 2022-05-08T11:08:37,669 | ^~~ 2022-05-08T11:08:37,669 src/pulchra.hpp:780:20: warning: unused variable ‘dz2’ [-Wunused-variable] 2022-05-08T11:08:37,669 780 | double dx2, dy2, dz2; 2022-05-08T11:08:37,670 | ^~~ 2022-05-08T11:08:37,670 src/pulchra.hpp:781:10: warning: unused variable ‘dx3’ [-Wunused-variable] 2022-05-08T11:08:37,670 781 | double dx3, dy3, dz3; 2022-05-08T11:08:37,671 | ^~~ 2022-05-08T11:08:37,671 src/pulchra.hpp:781:15: warning: unused variable ‘dy3’ [-Wunused-variable] 2022-05-08T11:08:37,671 781 | double dx3, dy3, dz3; 2022-05-08T11:08:37,672 | ^~~ 2022-05-08T11:08:37,672 src/pulchra.hpp:781:20: warning: unused variable ‘dz3’ [-Wunused-variable] 2022-05-08T11:08:37,672 781 | double dx3, dy3, dz3; 2022-05-08T11:08:37,672 | ^~~ 2022-05-08T11:08:37,673 src/pulchra.hpp:782:10: warning: unused variable ‘vx1’ [-Wunused-variable] 2022-05-08T11:08:37,673 782 | double vx1, vy1, vz1; 2022-05-08T11:08:37,673 | ^~~ 2022-05-08T11:08:37,674 src/pulchra.hpp:782:15: warning: unused variable ‘vy1’ [-Wunused-variable] 2022-05-08T11:08:37,674 782 | double vx1, vy1, vz1; 2022-05-08T11:08:37,674 | ^~~ 2022-05-08T11:08:37,675 src/pulchra.hpp:782:20: warning: unused variable ‘vz1’ [-Wunused-variable] 2022-05-08T11:08:37,675 782 | double vx1, vy1, vz1; 2022-05-08T11:08:37,675 | ^~~ 2022-05-08T11:08:37,676 src/pulchra.hpp:783:10: warning: unused variable ‘vx2’ [-Wunused-variable] 2022-05-08T11:08:37,676 783 | double vx2, vy2, vz2; 2022-05-08T11:08:37,676 | ^~~ 2022-05-08T11:08:37,677 src/pulchra.hpp:783:15: warning: unused variable ‘vy2’ [-Wunused-variable] 2022-05-08T11:08:37,677 783 | double vx2, vy2, vz2; 2022-05-08T11:08:37,677 | ^~~ 2022-05-08T11:08:37,678 src/pulchra.hpp:783:20: warning: unused variable ‘vz2’ [-Wunused-variable] 2022-05-08T11:08:37,678 783 | double vx2, vy2, vz2; 2022-05-08T11:08:37,678 | ^~~ 2022-05-08T11:08:37,678 src/pulchra.hpp:784:10: warning: unused variable ‘vx3’ [-Wunused-variable] 2022-05-08T11:08:37,679 784 | double vx3, vy3, vz3; 2022-05-08T11:08:37,679 | ^~~ 2022-05-08T11:08:37,679 src/pulchra.hpp:784:15: warning: unused variable ‘vy3’ [-Wunused-variable] 2022-05-08T11:08:37,680 784 | double vx3, vy3, vz3; 2022-05-08T11:08:37,680 | ^~~ 2022-05-08T11:08:37,680 src/pulchra.hpp:784:20: warning: unused variable ‘vz3’ [-Wunused-variable] 2022-05-08T11:08:37,681 784 | double vx3, vy3, vz3; 2022-05-08T11:08:37,681 | ^~~ 2022-05-08T11:08:37,697 src/pulchra.hpp: In member function ‘std::string pulchra::Pulchra::ca_optimize_from_mol(std::shared_ptr)’: 2022-05-08T11:08:37,697 src/pulchra.hpp:937:8: warning: unused variable ‘buf’ [-Wunused-variable] 2022-05-08T11:08:37,697 937 | char buf[1000]; 2022-05-08T11:08:37,698 | ^~~ 2022-05-08T11:08:37,698 src/pulchra.hpp:938:10: warning: unused variable ‘j’ [-Wunused-variable] 2022-05-08T11:08:37,698 938 | int i, j, hx, my_iter; 2022-05-08T11:08:37,699 | ^ 2022-05-08T11:08:37,699 src/pulchra.hpp:938:13: warning: unused variable ‘hx’ [-Wunused-variable] 2022-05-08T11:08:37,699 938 | int i, j, hx, my_iter; 2022-05-08T11:08:37,699 | ^~ 2022-05-08T11:08:37,700 src/pulchra.hpp:938:17: warning: unused variable ‘my_iter’ [-Wunused-variable] 2022-05-08T11:08:37,700 938 | int i, j, hx, my_iter; 2022-05-08T11:08:37,700 | ^~~~~~~ 2022-05-08T11:08:37,701 src/pulchra.hpp:939:32: warning: unused variable ‘dist2’ [-Wunused-variable] 2022-05-08T11:08:37,701 939 | double dx, dy, dz, dd, dist, dist2, dist3, ddist, ddist2; 2022-05-08T11:08:37,701 | ^~~~~ 2022-05-08T11:08:37,701 src/pulchra.hpp:939:39: warning: unused variable ‘dist3’ [-Wunused-variable] 2022-05-08T11:08:37,702 939 | double dx, dy, dz, dd, dist, dist2, dist3, ddist, ddist2; 2022-05-08T11:08:37,702 | ^~~~~ 2022-05-08T11:08:37,702 src/pulchra.hpp:939:53: warning: variable ‘ddist2’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,703 939 | double dx, dy, dz, dd, dist, dist2, dist3, ddist, ddist2; 2022-05-08T11:08:37,703 | ^~~~~~ 2022-05-08T11:08:37,703 src/pulchra.hpp:940:17: warning: unused variable ‘new_e_pot’ [-Wunused-variable] 2022-05-08T11:08:37,703 940 | double e_pot, new_e_pot, grad, alpha, e_pot1, e_pot2, e_pot3; 2022-05-08T11:08:37,704 | ^~~~~~~~~ 2022-05-08T11:08:37,704 src/pulchra.hpp:940:28: warning: unused variable ‘grad’ [-Wunused-variable] 2022-05-08T11:08:37,704 940 | double e_pot, new_e_pot, grad, alpha, e_pot1, e_pot2, e_pot3; 2022-05-08T11:08:37,705 | ^~~~ 2022-05-08T11:08:37,705 src/pulchra.hpp:940:34: warning: unused variable ‘alpha’ [-Wunused-variable] 2022-05-08T11:08:37,705 940 | double e_pot, new_e_pot, grad, alpha, e_pot1, e_pot2, e_pot3; 2022-05-08T11:08:37,705 | ^~~~~ 2022-05-08T11:08:37,706 src/pulchra.hpp:942:10: warning: unused variable ‘ff0’ [-Wunused-variable] 2022-05-08T11:08:37,706 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:08:37,706 | ^~~ 2022-05-08T11:08:37,707 src/pulchra.hpp:942:15: warning: unused variable ‘ff2’ [-Wunused-variable] 2022-05-08T11:08:37,707 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:08:37,707 | ^~~ 2022-05-08T11:08:37,708 src/pulchra.hpp:942:36: warning: unused variable ‘tdif’ [-Wunused-variable] 2022-05-08T11:08:37,708 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:08:37,708 | ^~~~ 2022-05-08T11:08:37,709 src/pulchra.hpp:942:42: warning: unused variable ‘dth’ [-Wunused-variable] 2022-05-08T11:08:37,709 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:08:37,709 | ^~~ 2022-05-08T11:08:37,710 src/pulchra.hpp:942:47: warning: unused variable ‘m0’ [-Wunused-variable] 2022-05-08T11:08:37,710 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:08:37,710 | ^~ 2022-05-08T11:08:37,710 src/pulchra.hpp:942:51: warning: unused variable ‘m2’ [-Wunused-variable] 2022-05-08T11:08:37,711 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:08:37,711 | ^~ 2022-05-08T11:08:37,711 src/pulchra.hpp:943:26: warning: unused variable ‘maxgrad’ [-Wunused-variable] 2022-05-08T11:08:37,712 943 | double theta0, deg_th, maxgrad, sum; 2022-05-08T11:08:37,712 | ^~~~~~~ 2022-05-08T11:08:37,712 src/pulchra.hpp:943:35: warning: unused variable ‘sum’ [-Wunused-variable] 2022-05-08T11:08:37,713 943 | double theta0, deg_th, maxgrad, sum; 2022-05-08T11:08:37,713 | ^~~ 2022-05-08T11:08:37,713 src/pulchra.hpp:944:10: warning: unused variable ‘f0’ [-Wunused-variable] 2022-05-08T11:08:37,714 944 | double f0[3], f2[3]; 2022-05-08T11:08:37,714 | ^~ 2022-05-08T11:08:37,714 src/pulchra.hpp:944:17: warning: unused variable ‘f2’ [-Wunused-variable] 2022-05-08T11:08:37,715 944 | double f0[3], f2[3]; 2022-05-08T11:08:37,715 | ^~ 2022-05-08T11:08:37,715 src/pulchra.hpp:945:10: warning: unused variable ‘x’ [-Wunused-variable] 2022-05-08T11:08:37,715 945 | double x, y, z; 2022-05-08T11:08:37,716 | ^ 2022-05-08T11:08:37,716 src/pulchra.hpp:945:13: warning: unused variable ‘y’ [-Wunused-variable] 2022-05-08T11:08:37,716 945 | double x, y, z; 2022-05-08T11:08:37,717 | ^ 2022-05-08T11:08:37,717 src/pulchra.hpp:945:16: warning: unused variable ‘z’ [-Wunused-variable] 2022-05-08T11:08:37,717 945 | double x, y, z; 2022-05-08T11:08:37,718 | ^ 2022-05-08T11:08:37,718 src/pulchra.hpp:947:8: warning: unused variable ‘sec’ [-Wunused-variable] 2022-05-08T11:08:37,718 947 | int *sec; 2022-05-08T11:08:37,719 | ^~~ 2022-05-08T11:08:37,719 src/pulchra.hpp:948:65: warning: unused variable ‘tmp’ [-Wunused-variable] 2022-05-08T11:08:37,719 948 | double **new_c_alpha, **gradient, **init_c_alpha, last_alpha, tmp, 2022-05-08T11:08:37,720 | ^~~ 2022-05-08T11:08:37,720 src/pulchra.hpp:949:4: warning: unused variable ‘last_good_alpha’ [-Wunused-variable] 2022-05-08T11:08:37,720 949 | last_good_alpha, d_alpha, last_e_pot; 2022-05-08T11:08:37,721 | ^~~~~~~~~~~~~~~ 2022-05-08T11:08:37,721 src/pulchra.hpp:949:21: warning: unused variable ‘d_alpha’ [-Wunused-variable] 2022-05-08T11:08:37,721 949 | last_good_alpha, d_alpha, last_e_pot; 2022-05-08T11:08:37,722 | ^~~~~~~ 2022-05-08T11:08:37,722 src/pulchra.hpp:949:30: warning: variable ‘last_e_pot’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,722 949 | last_good_alpha, d_alpha, last_e_pot; 2022-05-08T11:08:37,723 | ^~~~~~~~~~ 2022-05-08T11:08:37,723 src/pulchra.hpp:953:9: warning: unused variable ‘inp’ [-Wunused-variable] 2022-05-08T11:08:37,723 953 | FILE *inp; 2022-05-08T11:08:37,724 | ^~~ 2022-05-08T11:08:37,724 src/pulchra.hpp:954:19: warning: unused variable ‘ok’ [-Wunused-variable] 2022-05-08T11:08:37,724 954 | int mnum, init, ok; 2022-05-08T11:08:37,725 | ^~ 2022-05-08T11:08:37,725 src/pulchra.hpp:958:10: warning: unused variable ‘w1’ [-Wunused-variable] 2022-05-08T11:08:37,725 958 | double w1, w2, w3, eps; 2022-05-08T11:08:37,725 | ^~ 2022-05-08T11:08:37,726 src/pulchra.hpp:958:14: warning: unused variable ‘w2’ [-Wunused-variable] 2022-05-08T11:08:37,726 958 | double w1, w2, w3, eps; 2022-05-08T11:08:37,726 | ^~ 2022-05-08T11:08:37,727 src/pulchra.hpp:958:18: warning: unused variable ‘w3’ [-Wunused-variable] 2022-05-08T11:08:37,727 958 | double w1, w2, w3, eps; 2022-05-08T11:08:37,727 | ^~ 2022-05-08T11:08:37,728 src/pulchra.hpp:960:7: warning: variable ‘mode’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,728 960 | int mode, fcnt; 2022-05-08T11:08:37,728 | ^~~~ 2022-05-08T11:08:37,805 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::prepare_rbins(std::shared_ptr)’: 2022-05-08T11:08:37,806 src/pulchra.hpp:1724:16: warning: unused variable ‘l’ [-Wunused-variable] 2022-05-08T11:08:37,806 1724 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:08:37,806 | ^ 2022-05-08T11:08:37,807 src/pulchra.hpp:1724:19: warning: unused variable ‘m’ [-Wunused-variable] 2022-05-08T11:08:37,807 1724 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:08:37,807 | ^ 2022-05-08T11:08:37,808 src/pulchra.hpp:1724:47: warning: unused variable ‘found’ [-Wunused-variable] 2022-05-08T11:08:37,808 1724 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:08:37,808 | ^~~~~ 2022-05-08T11:08:37,809 src/pulchra.hpp:1724:54: warning: unused variable ‘pro’ [-Wunused-variable] 2022-05-08T11:08:37,809 1724 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:08:37,809 | ^~~ 2022-05-08T11:08:37,809 src/pulchra.hpp:1725:7: warning: unused variable ‘b13_1’ [-Wunused-variable] 2022-05-08T11:08:37,810 1725 | int b13_1, b13_2, b14; 2022-05-08T11:08:37,810 | ^~~~~ 2022-05-08T11:08:37,810 src/pulchra.hpp:1725:14: warning: unused variable ‘b13_2’ [-Wunused-variable] 2022-05-08T11:08:37,811 1725 | int b13_1, b13_2, b14; 2022-05-08T11:08:37,811 | ^~~~~ 2022-05-08T11:08:37,811 src/pulchra.hpp:1725:21: warning: unused variable ‘b14’ [-Wunused-variable] 2022-05-08T11:08:37,812 1725 | int b13_1, b13_2, b14; 2022-05-08T11:08:37,812 | ^~~ 2022-05-08T11:08:37,827 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::rebuild_backbone(std::shared_ptr)’: 2022-05-08T11:08:37,827 src/pulchra.hpp:1852:16: warning: unused variable ‘l’ [-Wunused-variable] 2022-05-08T11:08:37,828 1852 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:08:37,828 | ^ 2022-05-08T11:08:37,828 src/pulchra.hpp:1852:19: warning: unused variable ‘m’ [-Wunused-variable] 2022-05-08T11:08:37,829 1852 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:08:37,829 | ^ 2022-05-08T11:08:37,829 src/pulchra.hpp:1852:47: warning: unused variable ‘found’ [-Wunused-variable] 2022-05-08T11:08:37,829 1852 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:08:37,830 | ^~~~~ 2022-05-08T11:08:37,830 src/pulchra.hpp:1852:54: warning: variable ‘pro’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,830 1852 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:08:37,831 | ^~~ 2022-05-08T11:08:37,831 src/pulchra.hpp:1853:7: warning: unused variable ‘b13_1’ [-Wunused-variable] 2022-05-08T11:08:37,831 1853 | int b13_1, b13_2, b14; 2022-05-08T11:08:37,832 | ^~~~~ 2022-05-08T11:08:37,832 src/pulchra.hpp:1853:14: warning: unused variable ‘b13_2’ [-Wunused-variable] 2022-05-08T11:08:37,832 1853 | int b13_1, b13_2, b14; 2022-05-08T11:08:37,832 | ^~~~~ 2022-05-08T11:08:37,833 src/pulchra.hpp:1853:21: warning: unused variable ‘b14’ [-Wunused-variable] 2022-05-08T11:08:37,833 1853 | int b13_1, b13_2, b14; 2022-05-08T11:08:37,833 | ^~~ 2022-05-08T11:08:37,864 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::rebuild_sidechains(std::shared_ptr)’: 2022-05-08T11:08:37,865 src/pulchra.hpp:2023:12: warning: unused variable ‘cacoords’ [-Wunused-variable] 2022-05-08T11:08:37,865 2023 | double **cacoords, **tmpcoords, **tmpstat; 2022-05-08T11:08:37,865 | ^~~~~~~~ 2022-05-08T11:08:37,866 src/pulchra.hpp:2023:24: warning: unused variable ‘tmpcoords’ [-Wunused-variable] 2022-05-08T11:08:37,866 2023 | double **cacoords, **tmpcoords, **tmpstat; 2022-05-08T11:08:37,866 | ^~~~~~~~~ 2022-05-08T11:08:37,867 src/pulchra.hpp:2023:37: warning: unused variable ‘tmpstat’ [-Wunused-variable] 2022-05-08T11:08:37,867 2023 | double **cacoords, **tmpcoords, **tmpstat; 2022-05-08T11:08:37,867 | ^~~~~~~ 2022-05-08T11:08:37,867 src/pulchra.hpp:2024:10: warning: variable ‘x1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,868 2024 | double x1, y1, z1; 2022-05-08T11:08:37,868 | ^~ 2022-05-08T11:08:37,868 src/pulchra.hpp:2024:14: warning: variable ‘y1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,869 2024 | double x1, y1, z1; 2022-05-08T11:08:37,869 | ^~ 2022-05-08T11:08:37,869 src/pulchra.hpp:2024:18: warning: variable ‘z1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,869 2024 | double x1, y1, z1; 2022-05-08T11:08:37,870 | ^~ 2022-05-08T11:08:37,870 src/pulchra.hpp:2028:10: warning: unused variable ‘x5’ [-Wunused-variable] 2022-05-08T11:08:37,870 2028 | double x5, y5, z5; 2022-05-08T11:08:37,871 | ^~ 2022-05-08T11:08:37,871 src/pulchra.hpp:2028:14: warning: unused variable ‘y5’ [-Wunused-variable] 2022-05-08T11:08:37,871 2028 | double x5, y5, z5; 2022-05-08T11:08:37,871 | ^~ 2022-05-08T11:08:37,872 src/pulchra.hpp:2028:18: warning: unused variable ‘z5’ [-Wunused-variable] 2022-05-08T11:08:37,872 2028 | double x5, y5, z5; 2022-05-08T11:08:37,872 | ^~ 2022-05-08T11:08:37,872 src/pulchra.hpp:2029:10: warning: unused variable ‘r14’ [-Wunused-variable] 2022-05-08T11:08:37,873 2029 | double r14, r13_1, r13_2; 2022-05-08T11:08:37,873 | ^~~ 2022-05-08T11:08:37,873 src/pulchra.hpp:2029:15: warning: unused variable ‘r13_1’ [-Wunused-variable] 2022-05-08T11:08:37,874 2029 | double r14, r13_1, r13_2; 2022-05-08T11:08:37,874 | ^~~~~ 2022-05-08T11:08:37,874 src/pulchra.hpp:2029:22: warning: unused variable ‘r13_2’ [-Wunused-variable] 2022-05-08T11:08:37,875 2029 | double r14, r13_1, r13_2; 2022-05-08T11:08:37,875 | ^~~~~ 2022-05-08T11:08:37,875 src/pulchra.hpp:2030:10: warning: unused variable ‘dx’ [-Wunused-variable] 2022-05-08T11:08:37,876 2030 | double dx, dy, dz, dd; 2022-05-08T11:08:37,876 | ^~ 2022-05-08T11:08:37,876 src/pulchra.hpp:2030:14: warning: unused variable ‘dy’ [-Wunused-variable] 2022-05-08T11:08:37,877 2030 | double dx, dy, dz, dd; 2022-05-08T11:08:37,877 | ^~ 2022-05-08T11:08:37,877 src/pulchra.hpp:2030:18: warning: unused variable ‘dz’ [-Wunused-variable] 2022-05-08T11:08:37,877 2030 | double dx, dy, dz, dd; 2022-05-08T11:08:37,878 | ^~ 2022-05-08T11:08:37,878 src/pulchra.hpp:2030:22: warning: unused variable ‘dd’ [-Wunused-variable] 2022-05-08T11:08:37,878 2030 | double dx, dy, dz, dd; 2022-05-08T11:08:37,879 | ^~ 2022-05-08T11:08:37,879 src/pulchra.hpp:2031:15: warning: variable ‘besthit’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,879 2031 | double hit, besthit; 2022-05-08T11:08:37,879 | ^~~~~~~ 2022-05-08T11:08:37,880 src/pulchra.hpp:2032:7: warning: unused variable ‘exvol’ [-Wunused-variable] 2022-05-08T11:08:37,880 2032 | int exvol, bestpos; 2022-05-08T11:08:37,880 | ^~~~~ 2022-05-08T11:08:37,881 src/pulchra.hpp:2034:10: warning: unused variable ‘rmsd’ [-Wunused-variable] 2022-05-08T11:08:37,881 2034 | double rmsd, total; 2022-05-08T11:08:37,881 | ^~~~ 2022-05-08T11:08:37,881 src/pulchra.hpp:2034:16: warning: unused variable ‘total’ [-Wunused-variable] 2022-05-08T11:08:37,882 2034 | double rmsd, total; 2022-05-08T11:08:37,882 | ^~~~~ 2022-05-08T11:08:37,882 src/pulchra.hpp:2036:12: warning: unused variable ‘nca’ [-Wunused-variable] 2022-05-08T11:08:37,883 2036 | int nsc, nca; 2022-05-08T11:08:37,883 | ^~~ 2022-05-08T11:08:37,883 src/pulchra.hpp:2037:10: warning: unused variable ‘cax’ [-Wunused-variable] 2022-05-08T11:08:37,884 2037 | double cax, cay, caz; 2022-05-08T11:08:37,884 | ^~~ 2022-05-08T11:08:37,884 src/pulchra.hpp:2037:15: warning: unused variable ‘cay’ [-Wunused-variable] 2022-05-08T11:08:37,885 2037 | double cax, cay, caz; 2022-05-08T11:08:37,885 | ^~~ 2022-05-08T11:08:37,885 src/pulchra.hpp:2037:20: warning: unused variable ‘caz’ [-Wunused-variable] 2022-05-08T11:08:37,885 2037 | double cax, cay, caz; 2022-05-08T11:08:37,886 | ^~~ 2022-05-08T11:08:37,886 src/pulchra.hpp:2039:8: warning: unused variable ‘scn’ [-Wunused-variable] 2022-05-08T11:08:37,886 2039 | char scn[12][4]; 2022-05-08T11:08:37,887 | ^~~ 2022-05-08T11:08:37,887 src/pulchra.hpp:2040:7: warning: unused variable ‘ok’ [-Wunused-variable] 2022-05-08T11:08:37,887 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:08:37,887 | ^~ 2022-05-08T11:08:37,888 src/pulchra.hpp:2040:11: warning: unused variable ‘last_a’ [-Wunused-variable] 2022-05-08T11:08:37,888 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:08:37,888 | ^~~~~~ 2022-05-08T11:08:37,889 src/pulchra.hpp:2040:19: warning: unused variable ‘last_b’ [-Wunused-variable] 2022-05-08T11:08:37,889 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:08:37,889 | ^~~~~~ 2022-05-08T11:08:37,889 src/pulchra.hpp:2040:27: warning: unused variable ‘last_c’ [-Wunused-variable] 2022-05-08T11:08:37,890 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:08:37,890 | ^~~~~~ 2022-05-08T11:08:37,890 src/pulchra.hpp:2040:35: warning: unused variable ‘last_d’ [-Wunused-variable] 2022-05-08T11:08:37,891 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:08:37,891 | ^~~~~~ 2022-05-08T11:08:37,891 src/pulchra.hpp:2040:43: warning: unused variable ‘jpos’ [-Wunused-variable] 2022-05-08T11:08:37,892 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:08:37,892 | ^~~~ 2022-05-08T11:08:37,892 src/pulchra.hpp:2041:7: warning: unused variable ‘jx’ [-Wunused-variable] 2022-05-08T11:08:37,893 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,893 | ^~ 2022-05-08T11:08:37,893 src/pulchra.hpp:2041:11: warning: unused variable ‘jy’ [-Wunused-variable] 2022-05-08T11:08:37,894 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,894 | ^~ 2022-05-08T11:08:37,894 src/pulchra.hpp:2041:15: warning: unused variable ‘jz’ [-Wunused-variable] 2022-05-08T11:08:37,895 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,895 | ^~ 2022-05-08T11:08:37,895 src/pulchra.hpp:2041:19: warning: unused variable ‘jxi’ [-Wunused-variable] 2022-05-08T11:08:37,896 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,896 | ^~~ 2022-05-08T11:08:37,896 src/pulchra.hpp:2041:24: warning: unused variable ‘jyi’ [-Wunused-variable] 2022-05-08T11:08:37,896 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,897 | ^~~ 2022-05-08T11:08:37,897 src/pulchra.hpp:2041:29: warning: unused variable ‘jzi’ [-Wunused-variable] 2022-05-08T11:08:37,897 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,898 | ^~~ 2022-05-08T11:08:37,898 src/pulchra.hpp:2041:34: warning: unused variable ‘b13_1’ [-Wunused-variable] 2022-05-08T11:08:37,898 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,899 | ^~~~~ 2022-05-08T11:08:37,899 src/pulchra.hpp:2041:41: warning: unused variable ‘b13_2’ [-Wunused-variable] 2022-05-08T11:08:37,899 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,899 | ^~~~~ 2022-05-08T11:08:37,900 src/pulchra.hpp:2041:48: warning: unused variable ‘b14’ [-Wunused-variable] 2022-05-08T11:08:37,900 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,900 | ^~~ 2022-05-08T11:08:37,901 src/pulchra.hpp:2041:53: warning: unused variable ‘jm’ [-Wunused-variable] 2022-05-08T11:08:37,901 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:08:37,901 | ^~ 2022-05-08T11:08:37,901 src/pulchra.hpp:2042:13: warning: unused variable ‘bestrot’ [-Wunused-variable] 2022-05-08T11:08:37,902 2042 | int crot, bestrot, minexvol, totexvol, rtried, pos, cpos; 2022-05-08T11:08:37,902 | ^~~~~~~ 2022-05-08T11:08:37,902 src/pulchra.hpp:2042:22: warning: unused variable ‘minexvol’ [-Wunused-variable] 2022-05-08T11:08:37,903 2042 | int crot, bestrot, minexvol, totexvol, rtried, pos, cpos; 2022-05-08T11:08:37,903 | ^~~~~~~~ 2022-05-08T11:08:37,903 src/pulchra.hpp:2042:32: warning: variable ‘totexvol’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:37,903 2042 | int crot, bestrot, minexvol, totexvol, rtried, pos, cpos; 2022-05-08T11:08:37,904 | ^~~~~~~~ 2022-05-08T11:08:37,904 src/pulchra.hpp:2042:42: warning: unused variable ‘rtried’ [-Wunused-variable] 2022-05-08T11:08:37,904 2042 | int crot, bestrot, minexvol, totexvol, rtried, pos, cpos; 2022-05-08T11:08:37,905 | ^~~~~~ 2022-05-08T11:08:37,905 src/pulchra.hpp:2044:10: warning: unused variable ‘sort_rot’ [-Wunused-variable] 2022-05-08T11:08:37,905 2044 | double sort_rot[100][2]; 2022-05-08T11:08:37,906 | ^~~~~~~~ 2022-05-08T11:08:37,947 src/pulchra.hpp: In member function ‘int pulchra::Pulchra::get_conflicts(std::shared_ptr, pulchra::atom_list_3d, int, int, int)’: 2022-05-08T11:08:37,948 src/pulchra.hpp:2264:16: warning: unused variable ‘x’ [-Wunused-variable] 2022-05-08T11:08:37,948 2264 | int i, j, k, x, y, z; 2022-05-08T11:08:37,948 | ^ 2022-05-08T11:08:37,949 src/pulchra.hpp:2264:19: warning: unused variable ‘y’ [-Wunused-variable] 2022-05-08T11:08:37,949 2264 | int i, j, k, x, y, z; 2022-05-08T11:08:37,949 | ^ 2022-05-08T11:08:37,949 src/pulchra.hpp:2264:22: warning: unused variable ‘z’ [-Wunused-variable] 2022-05-08T11:08:37,950 2264 | int i, j, k, x, y, z; 2022-05-08T11:08:37,950 | ^ 2022-05-08T11:08:37,950 src/pulchra.hpp:2265:24: warning: unused variable ‘iter’ [-Wunused-variable] 2022-05-08T11:08:37,951 2265 | int ii, jj, kk, con, iter, maxcon, merged; 2022-05-08T11:08:37,951 | ^~~~ 2022-05-08T11:08:37,951 src/pulchra.hpp:2265:30: warning: unused variable ‘maxcon’ [-Wunused-variable] 2022-05-08T11:08:37,952 2265 | int ii, jj, kk, con, iter, maxcon, merged; 2022-05-08T11:08:37,952 | ^~~~~~ 2022-05-08T11:08:37,974 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::allocate_grid(std::shared_ptr, pulchra::atom_list_3d&, int*, int*, int*)’: 2022-05-08T11:08:37,974 src/pulchra.hpp:2374:7: warning: unused variable ‘i’ [-Wunused-variable] 2022-05-08T11:08:37,974 2374 | int i, j, x, y, z; 2022-05-08T11:08:37,975 | ^ 2022-05-08T11:08:37,975 src/pulchra.hpp:2374:10: warning: unused variable ‘j’ [-Wunused-variable] 2022-05-08T11:08:37,975 2374 | int i, j, x, y, z; 2022-05-08T11:08:37,976 | ^ 2022-05-08T11:08:38,005 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::optimize_exvol(std::shared_ptr)’: 2022-05-08T11:08:38,006 src/pulchra.hpp:2440:10: warning: variable ‘min’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:38,006 2440 | double min[3], max[3]; 2022-05-08T11:08:38,006 | ^~~ 2022-05-08T11:08:38,007 src/pulchra.hpp:2440:18: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:38,007 2440 | double min[3], max[3]; 2022-05-08T11:08:38,007 | ^~~ 2022-05-08T11:08:38,008 src/pulchra.hpp:2446:22: warning: unused variable ‘x’ [-Wunused-variable] 2022-05-08T11:08:38,008 2446 | int i, j, k, l, m, x, y, z; 2022-05-08T11:08:38,008 | ^ 2022-05-08T11:08:38,008 src/pulchra.hpp:2446:25: warning: unused variable ‘y’ [-Wunused-variable] 2022-05-08T11:08:38,009 2446 | int i, j, k, l, m, x, y, z; 2022-05-08T11:08:38,009 | ^ 2022-05-08T11:08:38,009 src/pulchra.hpp:2446:28: warning: unused variable ‘z’ [-Wunused-variable] 2022-05-08T11:08:38,010 2446 | int i, j, k, l, m, x, y, z; 2022-05-08T11:08:38,010 | ^ 2022-05-08T11:08:38,010 src/pulchra.hpp:2447:7: warning: unused variable ‘ii’ [-Wunused-variable] 2022-05-08T11:08:38,010 2447 | int ii, jj, kk, con, iter, maxcon, totcon; 2022-05-08T11:08:38,011 | ^~ 2022-05-08T11:08:38,011 src/pulchra.hpp:2447:11: warning: unused variable ‘jj’ [-Wunused-variable] 2022-05-08T11:08:38,011 2447 | int ii, jj, kk, con, iter, maxcon, totcon; 2022-05-08T11:08:38,012 | ^~ 2022-05-08T11:08:38,012 src/pulchra.hpp:2447:15: warning: unused variable ‘kk’ [-Wunused-variable] 2022-05-08T11:08:38,012 2447 | int ii, jj, kk, con, iter, maxcon, totcon; 2022-05-08T11:08:38,012 | ^~ 2022-05-08T11:08:38,013 src/pulchra.hpp:2450:12: warning: unused variable ‘nca’ [-Wunused-variable] 2022-05-08T11:08:38,013 2450 | int nsc, nca; 2022-05-08T11:08:38,013 | ^~~ 2022-05-08T11:08:38,014 src/pulchra.hpp:2451:10: warning: unused variable ‘cax’ [-Wunused-variable] 2022-05-08T11:08:38,014 2451 | double cax, cay, caz; 2022-05-08T11:08:38,014 | ^~~ 2022-05-08T11:08:38,015 src/pulchra.hpp:2451:15: warning: unused variable ‘cay’ [-Wunused-variable] 2022-05-08T11:08:38,015 2451 | double cax, cay, caz; 2022-05-08T11:08:38,015 | ^~~ 2022-05-08T11:08:38,016 src/pulchra.hpp:2451:20: warning: unused variable ‘caz’ [-Wunused-variable] 2022-05-08T11:08:38,016 2451 | double cax, cay, caz; 2022-05-08T11:08:38,016 | ^~~ 2022-05-08T11:08:38,017 src/pulchra.hpp:2453:10: warning: variable ‘x1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:38,017 2453 | double x1, y1, z1; 2022-05-08T11:08:38,017 | ^~ 2022-05-08T11:08:38,017 src/pulchra.hpp:2453:14: warning: variable ‘y1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:38,018 2453 | double x1, y1, z1; 2022-05-08T11:08:38,018 | ^~ 2022-05-08T11:08:38,018 src/pulchra.hpp:2453:18: warning: variable ‘z1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:38,019 2453 | double x1, y1, z1; 2022-05-08T11:08:38,019 | ^~ 2022-05-08T11:08:38,033 src/pulchra.hpp: In member function ‘int pulchra::Pulchra::chirality_check(std::shared_ptr)’: 2022-05-08T11:08:38,033 src/pulchra.hpp:2732:7: warning: unused variable ‘i’ [-Wunused-variable] 2022-05-08T11:08:38,033 2732 | int i; 2022-05-08T11:08:38,034 | ^ 2022-05-08T11:08:38,053 src/pulchra.hpp: In member function ‘double pulchra::Pulchra::hb_energy(std::shared_ptr, pulchra::atom_list_3d&, int, int, int)’: 2022-05-08T11:08:38,054 src/pulchra.hpp:2828:28: warning: unused variable ‘min_dist1’ [-Wunused-variable] 2022-05-08T11:08:38,054 2828 | double dx, dy, dz, dist, min_dist1, min_dist2; 2022-05-08T11:08:38,054 | ^~~~~~~~~ 2022-05-08T11:08:38,081 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::optimize_backbone(std::shared_ptr)’: 2022-05-08T11:08:38,081 src/pulchra.hpp:3042:10: warning: unused variable ‘k’ [-Wunused-variable] 2022-05-08T11:08:38,082 3042 | int i, k, best; 2022-05-08T11:08:38,082 | ^ 2022-05-08T11:08:38,092 src/pulchra.hpp: In member function ‘pulchra::PulchraResult pulchra::Pulchra::run_from_mol(std::shared_ptr)’: 2022-05-08T11:08:38,092 src/pulchra.hpp:3116:13: warning: unused variable ‘chain_length’ [-Wunused-variable] 2022-05-08T11:08:38,092 3116 | int const chain_length = chain->nres; 2022-05-08T11:08:38,093 | ^~~~~~~~~~~~ 2022-05-08T11:08:38,118 In file included from bindings/python/pulchra_bindings.cpp:5: 2022-05-08T11:08:38,119 src/pulchra.hpp: In member function ‘int pulchra::Pulchra::main(int, char**)’: 2022-05-08T11:08:38,119 src/pulchra.hpp:3315:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘std::chrono::duration::rep’ {aka ‘long long int’} [-Wformat=] 2022-05-08T11:08:38,120 3315 | "Done. Reconstruction finished in %ld s.\n", 2022-05-08T11:08:38,120 | ~~^ 2022-05-08T11:08:38,120 | | 2022-05-08T11:08:38,120 | long int 2022-05-08T11:08:38,121 | %lld 2022-05-08T11:08:38,121 3316 | std::chrono::duration_cast(time1 - time0) 2022-05-08T11:08:38,121 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-05-08T11:08:38,122 3317 | .count()); 2022-05-08T11:08:38,122 | ~~~~~~~~ 2022-05-08T11:08:38,122 | | 2022-05-08T11:08:38,123 | std::chrono::duration::rep {aka long long int} 2022-05-08T11:08:38,123 In file included from bindings/python/pulchra_bindings.cpp:5: 2022-05-08T11:08:38,123 src/pulchra.hpp:3145:8: warning: unused variable ‘buf’ [-Wunused-variable] 2022-05-08T11:08:38,124 3145 | char buf[100]; 2022-05-08T11:08:38,124 | ^~~ 2022-05-08T11:08:38,124 src/pulchra.hpp:3146:23: warning: variable ‘ini_name’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:08:38,125 3146 | char *name = NULL, *ini_name = NULL, *output_pdb_name=NULL, *output_traj_pdb_name=NULL; 2022-05-08T11:08:38,125 | ^~~~~~~~ 2022-05-08T11:08:38,125 src/pulchra.hpp:3147:9: warning: unused variable ‘ptr’ [-Wunused-variable] 2022-05-08T11:08:38,126 3147 | char *ptr, out_name[1000]; 2022-05-08T11:08:38,126 | ^~~ 2022-05-08T11:08:38,126 src/pulchra.hpp:3147:14: warning: unused variable ‘out_name’ [-Wunused-variable] 2022-05-08T11:08:38,126 3147 | char *ptr, out_name[1000]; 2022-05-08T11:08:38,127 | ^~~~~~~~ 2022-05-08T11:09:12,806 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=1.0.1 -Isrc -I/tmp/pip-build-env-l2jxre4a/overlay/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c bindings/python/pypulchra_bindings.cpp -o build/temp.linux-armv7l-3.9/bindings/python/pypulchra_bindings.o -fvisibility=hidden -g0 -std=c++14 -static 2022-05-08T11:09:42,711 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVERSION_INFO=1.0.1 -Isrc -I/tmp/pip-build-env-l2jxre4a/overlay/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c src/pulchra.cpp -o build/temp.linux-armv7l-3.9/src/pulchra.o -fvisibility=hidden -g0 -std=c++14 -static 2022-05-08T11:10:01,402 In file included from src/pulchra.cpp:20: 2022-05-08T11:10:01,403 src/pulchra.hpp: In member function ‘int pulchra::Pulchra::read_pdb_buffer(std::stringstream&, std::shared_ptr)’: 2022-05-08T11:10:01,403 src/pulchra.hpp:653:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 2022-05-08T11:10:01,404 653 | res->type = AA_NUMS[pusetseq(resname)]; 2022-05-08T11:10:01,404 | ~~~~~~~~^~~~~~~~~ 2022-05-08T11:10:01,420 src/pulchra.hpp:594:8: warning: variable ‘version’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,420 594 | char version; 2022-05-08T11:10:01,421 | ^~~~~~~ 2022-05-08T11:10:01,421 src/pulchra.hpp:595:46: warning: unused variable ‘num’ [-Wunused-variable] 2022-05-08T11:10:01,421 595 | int prevresnum, resnum, atmnum, locatmnum, num, locnum = 0, i, j; 2022-05-08T11:10:01,422 | ^~~ 2022-05-08T11:10:01,422 src/pulchra.hpp:595:63: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,422 595 | int prevresnum, resnum, atmnum, locatmnum, num, locnum = 0, i, j; 2022-05-08T11:10:01,423 | ^ 2022-05-08T11:10:01,423 src/pulchra.hpp:595:66: warning: unused variable ‘j’ [-Wunused-variable] 2022-05-08T11:10:01,423 595 | int prevresnum, resnum, atmnum, locatmnum, num, locnum = 0, i, j; 2022-05-08T11:10:01,423 | ^ 2022-05-08T11:10:01,424 src/pulchra.hpp:597:14: warning: unused variable ‘cc’ [-Wunused-variable] 2022-05-08T11:10:01,424 597 | int sgnum, cc, nres, ok, natom; 2022-05-08T11:10:01,424 | ^~ 2022-05-08T11:10:01,425 src/pulchra.hpp:597:18: warning: unused variable ‘nres’ [-Wunused-variable] 2022-05-08T11:10:01,425 597 | int sgnum, cc, nres, ok, natom; 2022-05-08T11:10:01,425 | ^~~~ 2022-05-08T11:10:01,426 src/pulchra.hpp:597:24: warning: unused variable ‘ok’ [-Wunused-variable] 2022-05-08T11:10:01,426 597 | int sgnum, cc, nres, ok, natom; 2022-05-08T11:10:01,426 | ^~ 2022-05-08T11:10:01,427 src/pulchra.hpp:597:28: warning: unused variable ‘natom’ [-Wunused-variable] 2022-05-08T11:10:01,427 597 | int sgnum, cc, nres, ok, natom; 2022-05-08T11:10:01,427 | ^~~~~ 2022-05-08T11:10:01,428 src/pulchra.hpp:602:10: warning: unused variable ‘dist’ [-Wunused-variable] 2022-05-08T11:10:01,428 602 | double dist; 2022-05-08T11:10:01,428 | ^~~~ 2022-05-08T11:10:01,429 src/pulchra.hpp:603:17: warning: unused variable ‘bin’ [-Wunused-variable] 2022-05-08T11:10:01,429 603 | unsigned char bin; 2022-05-08T11:10:01,429 | ^~~ 2022-05-08T11:10:01,430 src/pulchra.hpp:604:7: warning: variable ‘warn’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,430 604 | int warn = 0; 2022-05-08T11:10:01,430 | ^~~~ 2022-05-08T11:10:01,431 src/pulchra.hpp:605:10: warning: unused variable ‘cutoff’ [-Wunused-variable] 2022-05-08T11:10:01,431 605 | double cutoff; 2022-05-08T11:10:01,431 | ^~~~~~ 2022-05-08T11:10:01,467 src/pulchra.hpp: In member function ‘double pulchra::Pulchra::calc_ca_energy(const std::vector >&, double**, double**, double**, double, double*, bool, int)’: 2022-05-08T11:10:01,467 src/pulchra.hpp:775:10: warning: unused variable ‘theta0’ [-Wunused-variable] 2022-05-08T11:10:01,468 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:10:01,468 | ^~~~~~ 2022-05-08T11:10:01,468 src/pulchra.hpp:775:18: warning: unused variable ‘tdif’ [-Wunused-variable] 2022-05-08T11:10:01,469 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:10:01,469 | ^~~~ 2022-05-08T11:10:01,469 src/pulchra.hpp:775:24: warning: unused variable ‘th’ [-Wunused-variable] 2022-05-08T11:10:01,470 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:10:01,470 | ^~ 2022-05-08T11:10:01,470 src/pulchra.hpp:775:28: warning: unused variable ‘aa’ [-Wunused-variable] 2022-05-08T11:10:01,471 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:10:01,471 | ^~ 2022-05-08T11:10:01,471 src/pulchra.hpp:775:32: warning: unused variable ‘bb’ [-Wunused-variable] 2022-05-08T11:10:01,471 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:10:01,472 | ^~ 2022-05-08T11:10:01,472 src/pulchra.hpp:775:36: warning: unused variable ‘ab’ [-Wunused-variable] 2022-05-08T11:10:01,472 775 | double theta0, tdif, th, aa, bb, ab; 2022-05-08T11:10:01,473 | ^~ 2022-05-08T11:10:01,473 src/pulchra.hpp:776:10: warning: unused variable ‘ff0’ [-Wunused-variable] 2022-05-08T11:10:01,473 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:10:01,473 | ^~~ 2022-05-08T11:10:01,474 src/pulchra.hpp:776:15: warning: unused variable ‘ff2’ [-Wunused-variable] 2022-05-08T11:10:01,474 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:10:01,474 | ^~~ 2022-05-08T11:10:01,475 src/pulchra.hpp:776:20: warning: unused variable ‘dth’ [-Wunused-variable] 2022-05-08T11:10:01,475 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:10:01,475 | ^~~ 2022-05-08T11:10:01,476 src/pulchra.hpp:776:25: warning: unused variable ‘m0’ [-Wunused-variable] 2022-05-08T11:10:01,476 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:10:01,476 | ^~ 2022-05-08T11:10:01,477 src/pulchra.hpp:776:29: warning: unused variable ‘m2’ [-Wunused-variable] 2022-05-08T11:10:01,477 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:10:01,477 | ^~ 2022-05-08T11:10:01,478 src/pulchra.hpp:776:39: warning: unused variable ‘f0’ [-Wunused-variable] 2022-05-08T11:10:01,478 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:10:01,478 | ^~ 2022-05-08T11:10:01,479 src/pulchra.hpp:776:46: warning: unused variable ‘f2’ [-Wunused-variable] 2022-05-08T11:10:01,479 776 | double ff0, ff2, dth, m0, m2, grad, f0[3], f2[3]; 2022-05-08T11:10:01,479 | ^~ 2022-05-08T11:10:01,480 src/pulchra.hpp:777:10: warning: unused variable ‘adiff’ [-Wunused-variable] 2022-05-08T11:10:01,480 777 | double adiff[3], bdiff[3]; 2022-05-08T11:10:01,480 | ^~~~~ 2022-05-08T11:10:01,480 src/pulchra.hpp:777:20: warning: unused variable ‘bdiff’ [-Wunused-variable] 2022-05-08T11:10:01,481 777 | double adiff[3], bdiff[3]; 2022-05-08T11:10:01,481 | ^~~~~ 2022-05-08T11:10:01,481 src/pulchra.hpp:778:10: warning: unused variable ‘deriv’ [-Wunused-variable] 2022-05-08T11:10:01,482 778 | double deriv, theta, dtheta, len1, len2, cos_theta, sin_theta; 2022-05-08T11:10:01,482 | ^~~~~ 2022-05-08T11:10:01,482 src/pulchra.hpp:778:24: warning: unused variable ‘dtheta’ [-Wunused-variable] 2022-05-08T11:10:01,483 778 | double deriv, theta, dtheta, len1, len2, cos_theta, sin_theta; 2022-05-08T11:10:01,483 | ^~~~~~ 2022-05-08T11:10:01,483 src/pulchra.hpp:778:32: warning: unused variable ‘len1’ [-Wunused-variable] 2022-05-08T11:10:01,484 778 | double deriv, theta, dtheta, len1, len2, cos_theta, sin_theta; 2022-05-08T11:10:01,484 | ^~~~ 2022-05-08T11:10:01,484 src/pulchra.hpp:778:38: warning: unused variable ‘len2’ [-Wunused-variable] 2022-05-08T11:10:01,485 778 | double deriv, theta, dtheta, len1, len2, cos_theta, sin_theta; 2022-05-08T11:10:01,485 | ^~~~ 2022-05-08T11:10:01,485 src/pulchra.hpp:779:10: warning: unused variable ‘dx1’ [-Wunused-variable] 2022-05-08T11:10:01,486 779 | double dx1, dy1, dz1; 2022-05-08T11:10:01,486 | ^~~ 2022-05-08T11:10:01,486 src/pulchra.hpp:779:15: warning: unused variable ‘dy1’ [-Wunused-variable] 2022-05-08T11:10:01,486 779 | double dx1, dy1, dz1; 2022-05-08T11:10:01,487 | ^~~ 2022-05-08T11:10:01,487 src/pulchra.hpp:779:20: warning: unused variable ‘dz1’ [-Wunused-variable] 2022-05-08T11:10:01,488 779 | double dx1, dy1, dz1; 2022-05-08T11:10:01,488 | ^~~ 2022-05-08T11:10:01,488 src/pulchra.hpp:780:10: warning: unused variable ‘dx2’ [-Wunused-variable] 2022-05-08T11:10:01,488 780 | double dx2, dy2, dz2; 2022-05-08T11:10:01,489 | ^~~ 2022-05-08T11:10:01,489 src/pulchra.hpp:780:15: warning: unused variable ‘dy2’ [-Wunused-variable] 2022-05-08T11:10:01,489 780 | double dx2, dy2, dz2; 2022-05-08T11:10:01,490 | ^~~ 2022-05-08T11:10:01,490 src/pulchra.hpp:780:20: warning: unused variable ‘dz2’ [-Wunused-variable] 2022-05-08T11:10:01,490 780 | double dx2, dy2, dz2; 2022-05-08T11:10:01,491 | ^~~ 2022-05-08T11:10:01,491 src/pulchra.hpp:781:10: warning: unused variable ‘dx3’ [-Wunused-variable] 2022-05-08T11:10:01,491 781 | double dx3, dy3, dz3; 2022-05-08T11:10:01,492 | ^~~ 2022-05-08T11:10:01,492 src/pulchra.hpp:781:15: warning: unused variable ‘dy3’ [-Wunused-variable] 2022-05-08T11:10:01,492 781 | double dx3, dy3, dz3; 2022-05-08T11:10:01,492 | ^~~ 2022-05-08T11:10:01,493 src/pulchra.hpp:781:20: warning: unused variable ‘dz3’ [-Wunused-variable] 2022-05-08T11:10:01,493 781 | double dx3, dy3, dz3; 2022-05-08T11:10:01,493 | ^~~ 2022-05-08T11:10:01,494 src/pulchra.hpp:782:10: warning: unused variable ‘vx1’ [-Wunused-variable] 2022-05-08T11:10:01,494 782 | double vx1, vy1, vz1; 2022-05-08T11:10:01,494 | ^~~ 2022-05-08T11:10:01,495 src/pulchra.hpp:782:15: warning: unused variable ‘vy1’ [-Wunused-variable] 2022-05-08T11:10:01,495 782 | double vx1, vy1, vz1; 2022-05-08T11:10:01,495 | ^~~ 2022-05-08T11:10:01,496 src/pulchra.hpp:782:20: warning: unused variable ‘vz1’ [-Wunused-variable] 2022-05-08T11:10:01,496 782 | double vx1, vy1, vz1; 2022-05-08T11:10:01,496 | ^~~ 2022-05-08T11:10:01,497 src/pulchra.hpp:783:10: warning: unused variable ‘vx2’ [-Wunused-variable] 2022-05-08T11:10:01,497 783 | double vx2, vy2, vz2; 2022-05-08T11:10:01,497 | ^~~ 2022-05-08T11:10:01,497 src/pulchra.hpp:783:15: warning: unused variable ‘vy2’ [-Wunused-variable] 2022-05-08T11:10:01,498 783 | double vx2, vy2, vz2; 2022-05-08T11:10:01,498 | ^~~ 2022-05-08T11:10:01,498 src/pulchra.hpp:783:20: warning: unused variable ‘vz2’ [-Wunused-variable] 2022-05-08T11:10:01,499 783 | double vx2, vy2, vz2; 2022-05-08T11:10:01,499 | ^~~ 2022-05-08T11:10:01,499 src/pulchra.hpp:784:10: warning: unused variable ‘vx3’ [-Wunused-variable] 2022-05-08T11:10:01,500 784 | double vx3, vy3, vz3; 2022-05-08T11:10:01,500 | ^~~ 2022-05-08T11:10:01,500 src/pulchra.hpp:784:15: warning: unused variable ‘vy3’ [-Wunused-variable] 2022-05-08T11:10:01,501 784 | double vx3, vy3, vz3; 2022-05-08T11:10:01,501 | ^~~ 2022-05-08T11:10:01,501 src/pulchra.hpp:784:20: warning: unused variable ‘vz3’ [-Wunused-variable] 2022-05-08T11:10:01,501 784 | double vx3, vy3, vz3; 2022-05-08T11:10:01,502 | ^~~ 2022-05-08T11:10:01,517 src/pulchra.hpp: In member function ‘std::string pulchra::Pulchra::ca_optimize_from_mol(std::shared_ptr)’: 2022-05-08T11:10:01,518 src/pulchra.hpp:937:8: warning: unused variable ‘buf’ [-Wunused-variable] 2022-05-08T11:10:01,518 937 | char buf[1000]; 2022-05-08T11:10:01,518 | ^~~ 2022-05-08T11:10:01,519 src/pulchra.hpp:938:10: warning: unused variable ‘j’ [-Wunused-variable] 2022-05-08T11:10:01,519 938 | int i, j, hx, my_iter; 2022-05-08T11:10:01,519 | ^ 2022-05-08T11:10:01,520 src/pulchra.hpp:938:13: warning: unused variable ‘hx’ [-Wunused-variable] 2022-05-08T11:10:01,520 938 | int i, j, hx, my_iter; 2022-05-08T11:10:01,520 | ^~ 2022-05-08T11:10:01,521 src/pulchra.hpp:938:17: warning: unused variable ‘my_iter’ [-Wunused-variable] 2022-05-08T11:10:01,521 938 | int i, j, hx, my_iter; 2022-05-08T11:10:01,521 | ^~~~~~~ 2022-05-08T11:10:01,521 src/pulchra.hpp:939:32: warning: unused variable ‘dist2’ [-Wunused-variable] 2022-05-08T11:10:01,522 939 | double dx, dy, dz, dd, dist, dist2, dist3, ddist, ddist2; 2022-05-08T11:10:01,522 | ^~~~~ 2022-05-08T11:10:01,522 src/pulchra.hpp:939:39: warning: unused variable ‘dist3’ [-Wunused-variable] 2022-05-08T11:10:01,523 939 | double dx, dy, dz, dd, dist, dist2, dist3, ddist, ddist2; 2022-05-08T11:10:01,523 | ^~~~~ 2022-05-08T11:10:01,523 src/pulchra.hpp:939:53: warning: variable ‘ddist2’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,523 939 | double dx, dy, dz, dd, dist, dist2, dist3, ddist, ddist2; 2022-05-08T11:10:01,524 | ^~~~~~ 2022-05-08T11:10:01,524 src/pulchra.hpp:940:17: warning: unused variable ‘new_e_pot’ [-Wunused-variable] 2022-05-08T11:10:01,524 940 | double e_pot, new_e_pot, grad, alpha, e_pot1, e_pot2, e_pot3; 2022-05-08T11:10:01,525 | ^~~~~~~~~ 2022-05-08T11:10:01,525 src/pulchra.hpp:940:28: warning: unused variable ‘grad’ [-Wunused-variable] 2022-05-08T11:10:01,525 940 | double e_pot, new_e_pot, grad, alpha, e_pot1, e_pot2, e_pot3; 2022-05-08T11:10:01,526 | ^~~~ 2022-05-08T11:10:01,526 src/pulchra.hpp:940:34: warning: unused variable ‘alpha’ [-Wunused-variable] 2022-05-08T11:10:01,526 940 | double e_pot, new_e_pot, grad, alpha, e_pot1, e_pot2, e_pot3; 2022-05-08T11:10:01,526 | ^~~~~ 2022-05-08T11:10:01,527 src/pulchra.hpp:942:10: warning: unused variable ‘ff0’ [-Wunused-variable] 2022-05-08T11:10:01,527 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:10:01,527 | ^~~ 2022-05-08T11:10:01,528 src/pulchra.hpp:942:15: warning: unused variable ‘ff2’ [-Wunused-variable] 2022-05-08T11:10:01,528 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:10:01,528 | ^~~ 2022-05-08T11:10:01,529 src/pulchra.hpp:942:36: warning: unused variable ‘tdif’ [-Wunused-variable] 2022-05-08T11:10:01,529 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:10:01,529 | ^~~~ 2022-05-08T11:10:01,529 src/pulchra.hpp:942:42: warning: unused variable ‘dth’ [-Wunused-variable] 2022-05-08T11:10:01,530 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:10:01,530 | ^~~ 2022-05-08T11:10:01,530 src/pulchra.hpp:942:47: warning: unused variable ‘m0’ [-Wunused-variable] 2022-05-08T11:10:01,531 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:10:01,531 | ^~ 2022-05-08T11:10:01,531 src/pulchra.hpp:942:51: warning: unused variable ‘m2’ [-Wunused-variable] 2022-05-08T11:10:01,532 942 | double ff0, ff2, aa, ab, bb, th, tdif, dth, m0, m2; 2022-05-08T11:10:01,532 | ^~ 2022-05-08T11:10:01,532 src/pulchra.hpp:943:26: warning: unused variable ‘maxgrad’ [-Wunused-variable] 2022-05-08T11:10:01,533 943 | double theta0, deg_th, maxgrad, sum; 2022-05-08T11:10:01,533 | ^~~~~~~ 2022-05-08T11:10:01,533 src/pulchra.hpp:943:35: warning: unused variable ‘sum’ [-Wunused-variable] 2022-05-08T11:10:01,533 943 | double theta0, deg_th, maxgrad, sum; 2022-05-08T11:10:01,534 | ^~~ 2022-05-08T11:10:01,534 src/pulchra.hpp:944:10: warning: unused variable ‘f0’ [-Wunused-variable] 2022-05-08T11:10:01,535 944 | double f0[3], f2[3]; 2022-05-08T11:10:01,535 | ^~ 2022-05-08T11:10:01,535 src/pulchra.hpp:944:17: warning: unused variable ‘f2’ [-Wunused-variable] 2022-05-08T11:10:01,536 944 | double f0[3], f2[3]; 2022-05-08T11:10:01,536 | ^~ 2022-05-08T11:10:01,536 src/pulchra.hpp:945:10: warning: unused variable ‘x’ [-Wunused-variable] 2022-05-08T11:10:01,536 945 | double x, y, z; 2022-05-08T11:10:01,537 | ^ 2022-05-08T11:10:01,537 src/pulchra.hpp:945:13: warning: unused variable ‘y’ [-Wunused-variable] 2022-05-08T11:10:01,538 945 | double x, y, z; 2022-05-08T11:10:01,538 | ^ 2022-05-08T11:10:01,538 src/pulchra.hpp:945:16: warning: unused variable ‘z’ [-Wunused-variable] 2022-05-08T11:10:01,539 945 | double x, y, z; 2022-05-08T11:10:01,539 | ^ 2022-05-08T11:10:01,539 src/pulchra.hpp:947:8: warning: unused variable ‘sec’ [-Wunused-variable] 2022-05-08T11:10:01,539 947 | int *sec; 2022-05-08T11:10:01,540 | ^~~ 2022-05-08T11:10:01,540 src/pulchra.hpp:948:65: warning: unused variable ‘tmp’ [-Wunused-variable] 2022-05-08T11:10:01,540 948 | double **new_c_alpha, **gradient, **init_c_alpha, last_alpha, tmp, 2022-05-08T11:10:01,541 | ^~~ 2022-05-08T11:10:01,541 src/pulchra.hpp:949:4: warning: unused variable ‘last_good_alpha’ [-Wunused-variable] 2022-05-08T11:10:01,541 949 | last_good_alpha, d_alpha, last_e_pot; 2022-05-08T11:10:01,542 | ^~~~~~~~~~~~~~~ 2022-05-08T11:10:01,542 src/pulchra.hpp:949:21: warning: unused variable ‘d_alpha’ [-Wunused-variable] 2022-05-08T11:10:01,542 949 | last_good_alpha, d_alpha, last_e_pot; 2022-05-08T11:10:01,543 | ^~~~~~~ 2022-05-08T11:10:01,543 src/pulchra.hpp:949:30: warning: variable ‘last_e_pot’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,543 949 | last_good_alpha, d_alpha, last_e_pot; 2022-05-08T11:10:01,544 | ^~~~~~~~~~ 2022-05-08T11:10:01,544 src/pulchra.hpp:953:9: warning: unused variable ‘inp’ [-Wunused-variable] 2022-05-08T11:10:01,544 953 | FILE *inp; 2022-05-08T11:10:01,545 | ^~~ 2022-05-08T11:10:01,545 src/pulchra.hpp:954:19: warning: unused variable ‘ok’ [-Wunused-variable] 2022-05-08T11:10:01,545 954 | int mnum, init, ok; 2022-05-08T11:10:01,545 | ^~ 2022-05-08T11:10:01,546 src/pulchra.hpp:958:10: warning: unused variable ‘w1’ [-Wunused-variable] 2022-05-08T11:10:01,546 958 | double w1, w2, w3, eps; 2022-05-08T11:10:01,546 | ^~ 2022-05-08T11:10:01,547 src/pulchra.hpp:958:14: warning: unused variable ‘w2’ [-Wunused-variable] 2022-05-08T11:10:01,547 958 | double w1, w2, w3, eps; 2022-05-08T11:10:01,547 | ^~ 2022-05-08T11:10:01,548 src/pulchra.hpp:958:18: warning: unused variable ‘w3’ [-Wunused-variable] 2022-05-08T11:10:01,548 958 | double w1, w2, w3, eps; 2022-05-08T11:10:01,548 | ^~ 2022-05-08T11:10:01,549 src/pulchra.hpp:960:7: warning: variable ‘mode’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,549 960 | int mode, fcnt; 2022-05-08T11:10:01,549 | ^~~~ 2022-05-08T11:10:01,624 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::prepare_rbins(std::shared_ptr)’: 2022-05-08T11:10:01,625 src/pulchra.hpp:1724:16: warning: unused variable ‘l’ [-Wunused-variable] 2022-05-08T11:10:01,625 1724 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:10:01,626 | ^ 2022-05-08T11:10:01,626 src/pulchra.hpp:1724:19: warning: unused variable ‘m’ [-Wunused-variable] 2022-05-08T11:10:01,626 1724 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:10:01,626 | ^ 2022-05-08T11:10:01,627 src/pulchra.hpp:1724:47: warning: unused variable ‘found’ [-Wunused-variable] 2022-05-08T11:10:01,627 1724 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:10:01,627 | ^~~~~ 2022-05-08T11:10:01,628 src/pulchra.hpp:1724:54: warning: unused variable ‘pro’ [-Wunused-variable] 2022-05-08T11:10:01,628 1724 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:10:01,628 | ^~~ 2022-05-08T11:10:01,628 src/pulchra.hpp:1725:7: warning: unused variable ‘b13_1’ [-Wunused-variable] 2022-05-08T11:10:01,629 1725 | int b13_1, b13_2, b14; 2022-05-08T11:10:01,629 | ^~~~~ 2022-05-08T11:10:01,629 src/pulchra.hpp:1725:14: warning: unused variable ‘b13_2’ [-Wunused-variable] 2022-05-08T11:10:01,630 1725 | int b13_1, b13_2, b14; 2022-05-08T11:10:01,630 | ^~~~~ 2022-05-08T11:10:01,630 src/pulchra.hpp:1725:21: warning: unused variable ‘b14’ [-Wunused-variable] 2022-05-08T11:10:01,630 1725 | int b13_1, b13_2, b14; 2022-05-08T11:10:01,631 | ^~~ 2022-05-08T11:10:01,654 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::rebuild_backbone(std::shared_ptr)’: 2022-05-08T11:10:01,655 src/pulchra.hpp:1852:16: warning: unused variable ‘l’ [-Wunused-variable] 2022-05-08T11:10:01,655 1852 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:10:01,655 | ^ 2022-05-08T11:10:01,656 src/pulchra.hpp:1852:19: warning: unused variable ‘m’ [-Wunused-variable] 2022-05-08T11:10:01,656 1852 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:10:01,657 | ^ 2022-05-08T11:10:01,657 src/pulchra.hpp:1852:47: warning: unused variable ‘found’ [-Wunused-variable] 2022-05-08T11:10:01,657 1852 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:10:01,658 | ^~~~~ 2022-05-08T11:10:01,658 src/pulchra.hpp:1852:54: warning: variable ‘pro’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,659 1852 | int i, j, k, l, m, bin13_1, bin13_2, bin14, found, pro; 2022-05-08T11:10:01,659 | ^~~ 2022-05-08T11:10:01,659 src/pulchra.hpp:1853:7: warning: unused variable ‘b13_1’ [-Wunused-variable] 2022-05-08T11:10:01,660 1853 | int b13_1, b13_2, b14; 2022-05-08T11:10:01,660 | ^~~~~ 2022-05-08T11:10:01,660 src/pulchra.hpp:1853:14: warning: unused variable ‘b13_2’ [-Wunused-variable] 2022-05-08T11:10:01,661 1853 | int b13_1, b13_2, b14; 2022-05-08T11:10:01,661 | ^~~~~ 2022-05-08T11:10:01,662 src/pulchra.hpp:1853:21: warning: unused variable ‘b14’ [-Wunused-variable] 2022-05-08T11:10:01,662 1853 | int b13_1, b13_2, b14; 2022-05-08T11:10:01,662 | ^~~ 2022-05-08T11:10:01,699 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::rebuild_sidechains(std::shared_ptr)’: 2022-05-08T11:10:01,700 src/pulchra.hpp:2023:12: warning: unused variable ‘cacoords’ [-Wunused-variable] 2022-05-08T11:10:01,700 2023 | double **cacoords, **tmpcoords, **tmpstat; 2022-05-08T11:10:01,700 | ^~~~~~~~ 2022-05-08T11:10:01,701 src/pulchra.hpp:2023:24: warning: unused variable ‘tmpcoords’ [-Wunused-variable] 2022-05-08T11:10:01,701 2023 | double **cacoords, **tmpcoords, **tmpstat; 2022-05-08T11:10:01,702 | ^~~~~~~~~ 2022-05-08T11:10:01,702 src/pulchra.hpp:2023:37: warning: unused variable ‘tmpstat’ [-Wunused-variable] 2022-05-08T11:10:01,703 2023 | double **cacoords, **tmpcoords, **tmpstat; 2022-05-08T11:10:01,703 | ^~~~~~~ 2022-05-08T11:10:01,703 src/pulchra.hpp:2024:10: warning: variable ‘x1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,704 2024 | double x1, y1, z1; 2022-05-08T11:10:01,704 | ^~ 2022-05-08T11:10:01,704 src/pulchra.hpp:2024:14: warning: variable ‘y1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,705 2024 | double x1, y1, z1; 2022-05-08T11:10:01,705 | ^~ 2022-05-08T11:10:01,705 src/pulchra.hpp:2024:18: warning: variable ‘z1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,706 2024 | double x1, y1, z1; 2022-05-08T11:10:01,706 | ^~ 2022-05-08T11:10:01,706 src/pulchra.hpp:2028:10: warning: unused variable ‘x5’ [-Wunused-variable] 2022-05-08T11:10:01,707 2028 | double x5, y5, z5; 2022-05-08T11:10:01,707 | ^~ 2022-05-08T11:10:01,707 src/pulchra.hpp:2028:14: warning: unused variable ‘y5’ [-Wunused-variable] 2022-05-08T11:10:01,707 2028 | double x5, y5, z5; 2022-05-08T11:10:01,708 | ^~ 2022-05-08T11:10:01,708 src/pulchra.hpp:2028:18: warning: unused variable ‘z5’ [-Wunused-variable] 2022-05-08T11:10:01,708 2028 | double x5, y5, z5; 2022-05-08T11:10:01,709 | ^~ 2022-05-08T11:10:01,709 src/pulchra.hpp:2029:10: warning: unused variable ‘r14’ [-Wunused-variable] 2022-05-08T11:10:01,709 2029 | double r14, r13_1, r13_2; 2022-05-08T11:10:01,710 | ^~~ 2022-05-08T11:10:01,710 src/pulchra.hpp:2029:15: warning: unused variable ‘r13_1’ [-Wunused-variable] 2022-05-08T11:10:01,710 2029 | double r14, r13_1, r13_2; 2022-05-08T11:10:01,710 | ^~~~~ 2022-05-08T11:10:01,711 src/pulchra.hpp:2029:22: warning: unused variable ‘r13_2’ [-Wunused-variable] 2022-05-08T11:10:01,711 2029 | double r14, r13_1, r13_2; 2022-05-08T11:10:01,711 | ^~~~~ 2022-05-08T11:10:01,712 src/pulchra.hpp:2030:10: warning: unused variable ‘dx’ [-Wunused-variable] 2022-05-08T11:10:01,712 2030 | double dx, dy, dz, dd; 2022-05-08T11:10:01,712 | ^~ 2022-05-08T11:10:01,712 src/pulchra.hpp:2030:14: warning: unused variable ‘dy’ [-Wunused-variable] 2022-05-08T11:10:01,713 2030 | double dx, dy, dz, dd; 2022-05-08T11:10:01,713 | ^~ 2022-05-08T11:10:01,713 src/pulchra.hpp:2030:18: warning: unused variable ‘dz’ [-Wunused-variable] 2022-05-08T11:10:01,714 2030 | double dx, dy, dz, dd; 2022-05-08T11:10:01,714 | ^~ 2022-05-08T11:10:01,714 src/pulchra.hpp:2030:22: warning: unused variable ‘dd’ [-Wunused-variable] 2022-05-08T11:10:01,714 2030 | double dx, dy, dz, dd; 2022-05-08T11:10:01,715 | ^~ 2022-05-08T11:10:01,715 src/pulchra.hpp:2031:15: warning: variable ‘besthit’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,715 2031 | double hit, besthit; 2022-05-08T11:10:01,716 | ^~~~~~~ 2022-05-08T11:10:01,716 src/pulchra.hpp:2032:7: warning: unused variable ‘exvol’ [-Wunused-variable] 2022-05-08T11:10:01,716 2032 | int exvol, bestpos; 2022-05-08T11:10:01,717 | ^~~~~ 2022-05-08T11:10:01,717 src/pulchra.hpp:2034:10: warning: unused variable ‘rmsd’ [-Wunused-variable] 2022-05-08T11:10:01,717 2034 | double rmsd, total; 2022-05-08T11:10:01,717 | ^~~~ 2022-05-08T11:10:01,718 src/pulchra.hpp:2034:16: warning: unused variable ‘total’ [-Wunused-variable] 2022-05-08T11:10:01,718 2034 | double rmsd, total; 2022-05-08T11:10:01,719 | ^~~~~ 2022-05-08T11:10:01,719 src/pulchra.hpp:2036:12: warning: unused variable ‘nca’ [-Wunused-variable] 2022-05-08T11:10:01,719 2036 | int nsc, nca; 2022-05-08T11:10:01,720 | ^~~ 2022-05-08T11:10:01,720 src/pulchra.hpp:2037:10: warning: unused variable ‘cax’ [-Wunused-variable] 2022-05-08T11:10:01,720 2037 | double cax, cay, caz; 2022-05-08T11:10:01,720 | ^~~ 2022-05-08T11:10:01,721 src/pulchra.hpp:2037:15: warning: unused variable ‘cay’ [-Wunused-variable] 2022-05-08T11:10:01,721 2037 | double cax, cay, caz; 2022-05-08T11:10:01,721 | ^~~ 2022-05-08T11:10:01,722 src/pulchra.hpp:2037:20: warning: unused variable ‘caz’ [-Wunused-variable] 2022-05-08T11:10:01,722 2037 | double cax, cay, caz; 2022-05-08T11:10:01,722 | ^~~ 2022-05-08T11:10:01,722 src/pulchra.hpp:2039:8: warning: unused variable ‘scn’ [-Wunused-variable] 2022-05-08T11:10:01,723 2039 | char scn[12][4]; 2022-05-08T11:10:01,723 | ^~~ 2022-05-08T11:10:01,723 src/pulchra.hpp:2040:7: warning: unused variable ‘ok’ [-Wunused-variable] 2022-05-08T11:10:01,724 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:10:01,724 | ^~ 2022-05-08T11:10:01,724 src/pulchra.hpp:2040:11: warning: unused variable ‘last_a’ [-Wunused-variable] 2022-05-08T11:10:01,725 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:10:01,725 | ^~~~~~ 2022-05-08T11:10:01,725 src/pulchra.hpp:2040:19: warning: unused variable ‘last_b’ [-Wunused-variable] 2022-05-08T11:10:01,725 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:10:01,726 | ^~~~~~ 2022-05-08T11:10:01,726 src/pulchra.hpp:2040:27: warning: unused variable ‘last_c’ [-Wunused-variable] 2022-05-08T11:10:01,726 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:10:01,727 | ^~~~~~ 2022-05-08T11:10:01,727 src/pulchra.hpp:2040:35: warning: unused variable ‘last_d’ [-Wunused-variable] 2022-05-08T11:10:01,727 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:10:01,728 | ^~~~~~ 2022-05-08T11:10:01,728 src/pulchra.hpp:2040:43: warning: unused variable ‘jpos’ [-Wunused-variable] 2022-05-08T11:10:01,728 2040 | int ok, last_a, last_b, last_c, last_d, jpos; 2022-05-08T11:10:01,728 | ^~~~ 2022-05-08T11:10:01,729 src/pulchra.hpp:2041:7: warning: unused variable ‘jx’ [-Wunused-variable] 2022-05-08T11:10:01,729 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,729 | ^~ 2022-05-08T11:10:01,730 src/pulchra.hpp:2041:11: warning: unused variable ‘jy’ [-Wunused-variable] 2022-05-08T11:10:01,730 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,730 | ^~ 2022-05-08T11:10:01,731 src/pulchra.hpp:2041:15: warning: unused variable ‘jz’ [-Wunused-variable] 2022-05-08T11:10:01,731 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,731 | ^~ 2022-05-08T11:10:01,731 src/pulchra.hpp:2041:19: warning: unused variable ‘jxi’ [-Wunused-variable] 2022-05-08T11:10:01,732 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,732 | ^~~ 2022-05-08T11:10:01,732 src/pulchra.hpp:2041:24: warning: unused variable ‘jyi’ [-Wunused-variable] 2022-05-08T11:10:01,733 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,733 | ^~~ 2022-05-08T11:10:01,733 src/pulchra.hpp:2041:29: warning: unused variable ‘jzi’ [-Wunused-variable] 2022-05-08T11:10:01,734 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,734 | ^~~ 2022-05-08T11:10:01,734 src/pulchra.hpp:2041:34: warning: unused variable ‘b13_1’ [-Wunused-variable] 2022-05-08T11:10:01,735 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,735 | ^~~~~ 2022-05-08T11:10:01,735 src/pulchra.hpp:2041:41: warning: unused variable ‘b13_2’ [-Wunused-variable] 2022-05-08T11:10:01,736 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,736 | ^~~~~ 2022-05-08T11:10:01,736 src/pulchra.hpp:2041:48: warning: unused variable ‘b14’ [-Wunused-variable] 2022-05-08T11:10:01,737 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,737 | ^~~ 2022-05-08T11:10:01,737 src/pulchra.hpp:2041:53: warning: unused variable ‘jm’ [-Wunused-variable] 2022-05-08T11:10:01,737 2041 | int jx, jy, jz, jxi, jyi, jzi, b13_1, b13_2, b14, jm; 2022-05-08T11:10:01,738 | ^~ 2022-05-08T11:10:01,738 src/pulchra.hpp:2042:13: warning: unused variable ‘bestrot’ [-Wunused-variable] 2022-05-08T11:10:01,738 2042 | int crot, bestrot, minexvol, totexvol, rtried, pos, cpos; 2022-05-08T11:10:01,739 | ^~~~~~~ 2022-05-08T11:10:01,739 src/pulchra.hpp:2042:22: warning: unused variable ‘minexvol’ [-Wunused-variable] 2022-05-08T11:10:01,739 2042 | int crot, bestrot, minexvol, totexvol, rtried, pos, cpos; 2022-05-08T11:10:01,740 | ^~~~~~~~ 2022-05-08T11:10:01,740 src/pulchra.hpp:2042:32: warning: variable ‘totexvol’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,740 2042 | int crot, bestrot, minexvol, totexvol, rtried, pos, cpos; 2022-05-08T11:10:01,740 | ^~~~~~~~ 2022-05-08T11:10:01,741 src/pulchra.hpp:2042:42: warning: unused variable ‘rtried’ [-Wunused-variable] 2022-05-08T11:10:01,741 2042 | int crot, bestrot, minexvol, totexvol, rtried, pos, cpos; 2022-05-08T11:10:01,741 | ^~~~~~ 2022-05-08T11:10:01,742 src/pulchra.hpp:2044:10: warning: unused variable ‘sort_rot’ [-Wunused-variable] 2022-05-08T11:10:01,742 2044 | double sort_rot[100][2]; 2022-05-08T11:10:01,742 | ^~~~~~~~ 2022-05-08T11:10:01,794 src/pulchra.hpp: In member function ‘int pulchra::Pulchra::get_conflicts(std::shared_ptr, pulchra::atom_list_3d, int, int, int)’: 2022-05-08T11:10:01,795 src/pulchra.hpp:2264:16: warning: unused variable ‘x’ [-Wunused-variable] 2022-05-08T11:10:01,795 2264 | int i, j, k, x, y, z; 2022-05-08T11:10:01,795 | ^ 2022-05-08T11:10:01,796 src/pulchra.hpp:2264:19: warning: unused variable ‘y’ [-Wunused-variable] 2022-05-08T11:10:01,796 2264 | int i, j, k, x, y, z; 2022-05-08T11:10:01,796 | ^ 2022-05-08T11:10:01,797 src/pulchra.hpp:2264:22: warning: unused variable ‘z’ [-Wunused-variable] 2022-05-08T11:10:01,797 2264 | int i, j, k, x, y, z; 2022-05-08T11:10:01,797 | ^ 2022-05-08T11:10:01,797 src/pulchra.hpp:2265:24: warning: unused variable ‘iter’ [-Wunused-variable] 2022-05-08T11:10:01,798 2265 | int ii, jj, kk, con, iter, maxcon, merged; 2022-05-08T11:10:01,798 | ^~~~ 2022-05-08T11:10:01,798 src/pulchra.hpp:2265:30: warning: unused variable ‘maxcon’ [-Wunused-variable] 2022-05-08T11:10:01,799 2265 | int ii, jj, kk, con, iter, maxcon, merged; 2022-05-08T11:10:01,799 | ^~~~~~ 2022-05-08T11:10:01,818 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::allocate_grid(std::shared_ptr, pulchra::atom_list_3d&, int*, int*, int*)’: 2022-05-08T11:10:01,819 src/pulchra.hpp:2374:7: warning: unused variable ‘i’ [-Wunused-variable] 2022-05-08T11:10:01,819 2374 | int i, j, x, y, z; 2022-05-08T11:10:01,819 | ^ 2022-05-08T11:10:01,820 src/pulchra.hpp:2374:10: warning: unused variable ‘j’ [-Wunused-variable] 2022-05-08T11:10:01,820 2374 | int i, j, x, y, z; 2022-05-08T11:10:01,820 | ^ 2022-05-08T11:10:01,852 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::optimize_exvol(std::shared_ptr)’: 2022-05-08T11:10:01,853 src/pulchra.hpp:2440:10: warning: variable ‘min’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,853 2440 | double min[3], max[3]; 2022-05-08T11:10:01,853 | ^~~ 2022-05-08T11:10:01,854 src/pulchra.hpp:2440:18: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,854 2440 | double min[3], max[3]; 2022-05-08T11:10:01,855 | ^~~ 2022-05-08T11:10:01,855 src/pulchra.hpp:2446:22: warning: unused variable ‘x’ [-Wunused-variable] 2022-05-08T11:10:01,855 2446 | int i, j, k, l, m, x, y, z; 2022-05-08T11:10:01,856 | ^ 2022-05-08T11:10:01,856 src/pulchra.hpp:2446:25: warning: unused variable ‘y’ [-Wunused-variable] 2022-05-08T11:10:01,857 2446 | int i, j, k, l, m, x, y, z; 2022-05-08T11:10:01,857 | ^ 2022-05-08T11:10:01,857 src/pulchra.hpp:2446:28: warning: unused variable ‘z’ [-Wunused-variable] 2022-05-08T11:10:01,858 2446 | int i, j, k, l, m, x, y, z; 2022-05-08T11:10:01,858 | ^ 2022-05-08T11:10:01,858 src/pulchra.hpp:2447:7: warning: unused variable ‘ii’ [-Wunused-variable] 2022-05-08T11:10:01,859 2447 | int ii, jj, kk, con, iter, maxcon, totcon; 2022-05-08T11:10:01,859 | ^~ 2022-05-08T11:10:01,859 src/pulchra.hpp:2447:11: warning: unused variable ‘jj’ [-Wunused-variable] 2022-05-08T11:10:01,860 2447 | int ii, jj, kk, con, iter, maxcon, totcon; 2022-05-08T11:10:01,860 | ^~ 2022-05-08T11:10:01,864 src/pulchra.hpp:2447:15: warning: unused variable ‘kk’ [-Wunused-variable] 2022-05-08T11:10:01,865 2447 | int ii, jj, kk, con, iter, maxcon, totcon; 2022-05-08T11:10:01,865 | ^~ 2022-05-08T11:10:01,865 src/pulchra.hpp:2450:12: warning: unused variable ‘nca’ [-Wunused-variable] 2022-05-08T11:10:01,866 2450 | int nsc, nca; 2022-05-08T11:10:01,866 | ^~~ 2022-05-08T11:10:01,866 src/pulchra.hpp:2451:10: warning: unused variable ‘cax’ [-Wunused-variable] 2022-05-08T11:10:01,867 2451 | double cax, cay, caz; 2022-05-08T11:10:01,867 | ^~~ 2022-05-08T11:10:01,867 src/pulchra.hpp:2451:15: warning: unused variable ‘cay’ [-Wunused-variable] 2022-05-08T11:10:01,867 2451 | double cax, cay, caz; 2022-05-08T11:10:01,868 | ^~~ 2022-05-08T11:10:01,868 src/pulchra.hpp:2451:20: warning: unused variable ‘caz’ [-Wunused-variable] 2022-05-08T11:10:01,868 2451 | double cax, cay, caz; 2022-05-08T11:10:01,869 | ^~~ 2022-05-08T11:10:01,869 src/pulchra.hpp:2453:10: warning: variable ‘x1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,869 2453 | double x1, y1, z1; 2022-05-08T11:10:01,870 | ^~ 2022-05-08T11:10:01,870 src/pulchra.hpp:2453:14: warning: variable ‘y1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,870 2453 | double x1, y1, z1; 2022-05-08T11:10:01,870 | ^~ 2022-05-08T11:10:01,871 src/pulchra.hpp:2453:18: warning: variable ‘z1’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,871 2453 | double x1, y1, z1; 2022-05-08T11:10:01,871 | ^~ 2022-05-08T11:10:01,894 src/pulchra.hpp: In member function ‘int pulchra::Pulchra::chirality_check(std::shared_ptr)’: 2022-05-08T11:10:01,895 src/pulchra.hpp:2732:7: warning: unused variable ‘i’ [-Wunused-variable] 2022-05-08T11:10:01,895 2732 | int i; 2022-05-08T11:10:01,895 | ^ 2022-05-08T11:10:01,910 src/pulchra.hpp: In member function ‘double pulchra::Pulchra::hb_energy(std::shared_ptr, pulchra::atom_list_3d&, int, int, int)’: 2022-05-08T11:10:01,910 src/pulchra.hpp:2828:28: warning: unused variable ‘min_dist1’ [-Wunused-variable] 2022-05-08T11:10:01,910 2828 | double dx, dy, dz, dist, min_dist1, min_dist2; 2022-05-08T11:10:01,911 | ^~~~~~~~~ 2022-05-08T11:10:01,939 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::optimize_backbone(std::shared_ptr)’: 2022-05-08T11:10:01,940 src/pulchra.hpp:3042:10: warning: unused variable ‘k’ [-Wunused-variable] 2022-05-08T11:10:01,940 3042 | int i, k, best; 2022-05-08T11:10:01,940 | ^ 2022-05-08T11:10:01,952 src/pulchra.hpp: In member function ‘pulchra::PulchraResult pulchra::Pulchra::run_from_mol(std::shared_ptr)’: 2022-05-08T11:10:01,952 src/pulchra.hpp:3116:13: warning: unused variable ‘chain_length’ [-Wunused-variable] 2022-05-08T11:10:01,952 3116 | int const chain_length = chain->nres; 2022-05-08T11:10:01,953 | ^~~~~~~~~~~~ 2022-05-08T11:10:01,980 In file included from src/pulchra.cpp:20: 2022-05-08T11:10:01,980 src/pulchra.hpp: In member function ‘int pulchra::Pulchra::main(int, char**)’: 2022-05-08T11:10:01,981 src/pulchra.hpp:3315:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘std::chrono::duration::rep’ {aka ‘long long int’} [-Wformat=] 2022-05-08T11:10:01,981 3315 | "Done. Reconstruction finished in %ld s.\n", 2022-05-08T11:10:01,981 | ~~^ 2022-05-08T11:10:01,981 | | 2022-05-08T11:10:01,982 | long int 2022-05-08T11:10:01,982 | %lld 2022-05-08T11:10:01,982 3316 | std::chrono::duration_cast(time1 - time0) 2022-05-08T11:10:01,983 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-05-08T11:10:01,983 3317 | .count()); 2022-05-08T11:10:01,983 | ~~~~~~~~ 2022-05-08T11:10:01,983 | | 2022-05-08T11:10:01,984 | std::chrono::duration::rep {aka long long int} 2022-05-08T11:10:01,988 In file included from src/pulchra.cpp:20: 2022-05-08T11:10:01,988 src/pulchra.hpp:3145:8: warning: unused variable ‘buf’ [-Wunused-variable] 2022-05-08T11:10:01,989 3145 | char buf[100]; 2022-05-08T11:10:01,989 | ^~~ 2022-05-08T11:10:01,989 src/pulchra.hpp:3146:23: warning: variable ‘ini_name’ set but not used [-Wunused-but-set-variable] 2022-05-08T11:10:01,990 3146 | char *name = NULL, *ini_name = NULL, *output_pdb_name=NULL, *output_traj_pdb_name=NULL; 2022-05-08T11:10:01,990 | ^~~~~~~~ 2022-05-08T11:10:01,991 src/pulchra.hpp:3147:9: warning: unused variable ‘ptr’ [-Wunused-variable] 2022-05-08T11:10:01,991 3147 | char *ptr, out_name[1000]; 2022-05-08T11:10:01,991 | ^~~ 2022-05-08T11:10:01,992 src/pulchra.hpp:3147:14: warning: unused variable ‘out_name’ [-Wunused-variable] 2022-05-08T11:10:01,992 3147 | char *ptr, out_name[1000]; 2022-05-08T11:10:01,992 | ^~~~~~~~ 2022-05-08T11:10:56,659 src/pulchra.hpp: In member function ‘void pulchra::Pulchra::allocate_grid(std::shared_ptr, pulchra::atom_list_3d&, int*, int*, int*)’: 2022-05-08T11:10:56,660 src/pulchra.hpp:2429:11: warning: ‘xgrid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-05-08T11:10:56,660 2429 | printf("Grid already allocated (%d %d %d)\n", xgrid, ygrid, 2022-05-08T11:10:56,661 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-05-08T11:10:56,661 2430 | zgrid); 2022-05-08T11:10:56,661 | ~~~~~~ 2022-05-08T11:10:56,662 src/pulchra.hpp:2429:11: warning: ‘ygrid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-05-08T11:10:56,662 src/pulchra.hpp:2429:11: warning: ‘zgrid’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-05-08T11:11:08,235 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/bindings/python/pulchra_bindings.o build/temp.linux-armv7l-3.9/bindings/python/pypulchra_bindings.o build/temp.linux-armv7l-3.9/src/pulchra.o -L/usr/lib -o build/lib.linux-armv7l-3.9/pypulchra/_pypulchra.cpython-39-arm-linux-gnueabihf.so 2022-05-08T11:11:09,259 running install 2022-05-08T11:11:09,321 running install_lib 2022-05-08T11:11:09,328 creating build/bdist.linux-armv7l 2022-05-08T11:11:09,329 creating build/bdist.linux-armv7l/wheel 2022-05-08T11:11:09,332 creating build/bdist.linux-armv7l/wheel/pypulchra 2022-05-08T11:11:09,531 running install_egg_info 2022-05-08T11:11:09,579 running egg_info 2022-05-08T11:11:09,613 writing manifest file 'pypulchra.egg-info/SOURCES.txt' 2022-05-08T11:11:09,616 Copying pypulchra.egg-info to build/bdist.linux-armv7l/wheel/pypulchra-1.0.1-py3.9.egg-info 2022-05-08T11:11:09,637 running install_scripts 2022-05-08T11:11:11,855 Building wheel for pypulchra (pyproject.toml): finished with status 'done' 2022-05-08T11:11:11,979 Created wheel for pypulchra: filename=pypulchra-1.0.1-cp39-cp39-linux_armv7l.whl size=1934118 sha256=e924917a730e5895e85d8e5768e339b83845808e32b55fbb3fe065485fed3bd7 2022-05-08T11:11:11,981 Stored in directory: /tmp/pip-ephem-wheel-cache-d2fdmohz/wheels/47/a5/56/06209dbca29484e7ec423ba368d2cf27880a63df5e650f48fd 2022-05-08T11:11:12,004 Successfully built pypulchra 2022-05-08T11:11:12,150 Removed build tracker: '/tmp/pip-req-tracker-gkrzw57s'