2022-05-11T07:26:30,561 Created temporary directory: /tmp/pip-ephem-wheel-cache-16h63zrj
2022-05-11T07:26:30,566 Created temporary directory: /tmp/pip-req-tracker-aq8ibgoy
2022-05-11T07:26:30,567 Initialized build tracking at /tmp/pip-req-tracker-aq8ibgoy
2022-05-11T07:26:30,568 Created build tracker: /tmp/pip-req-tracker-aq8ibgoy
2022-05-11T07:26:30,568 Entered build tracker: /tmp/pip-req-tracker-aq8ibgoy
2022-05-11T07:26:30,569 Created temporary directory: /tmp/pip-wheel-86xhj3e2
2022-05-11T07:26:30,637 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-05-11T07:26:30,646 2 location(s) to search for versions of mah51-biopython:
2022-05-11T07:26:30,646 * https://pypi.org/simple/mah51-biopython/
2022-05-11T07:26:30,646 * https://www.piwheels.org/simple/mah51-biopython/
2022-05-11T07:26:30,648 Fetching project page and analyzing links: https://pypi.org/simple/mah51-biopython/
2022-05-11T07:26:30,649 Getting page https://pypi.org/simple/mah51-biopython/
2022-05-11T07:26:30,652 Found index url https://pypi.org/simple
2022-05-11T07:26:30,767   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/35/29/2567e41e6e146db212db51d32b72925fdb9e72ac769d8e28dae4781d7916/mah51_biopython-1.0-py3.9-macosx-12-arm64.egg#sha256=12c8ec9928c67727692b212136837e8363afa4aee53f1f04f4700124e121874b (from https://pypi.org/simple/mah51-biopython/) (requires-python:>=3.7)
2022-05-11T07:26:30,768   Found link https://files.pythonhosted.org/packages/f2/79/60d22aeb727a7420bf99d2c28a35898186c58be859193ad16b71520b0483/mah51-biopython-1.1.tar.gz#sha256=07509a21bbcc11a96c8491268347981bcb31796790fdf4f5f2e5e94ffcc4fc43 (from https://pypi.org/simple/mah51-biopython/) (requires-python:>=3.7), version: 1.1
2022-05-11T07:26:30,769   Skipping link: No binaries permitted for mah51-biopython: https://files.pythonhosted.org/packages/62/88/590cb405f8497131d4589629aa1ee157b24b1c42baadf8abd374bd871301/mah51_biopython-1.1-cp39-cp39-macosx_12_0_arm64.whl#sha256=87d02e4a13854a3c5e1d5e1154cbf36b8f22c14781d716fbfbf792373dee6103 (from https://pypi.org/simple/mah51-biopython/) (requires-python:>=3.7)
2022-05-11T07:26:30,770 Fetching project page and analyzing links: https://www.piwheels.org/simple/mah51-biopython/
2022-05-11T07:26:30,771 Getting page https://www.piwheels.org/simple/mah51-biopython/
2022-05-11T07:26:30,772 Found index url https://www.piwheels.org/simple
2022-05-11T07:26:31,003   Skipping link: No binaries permitted for mah51-biopython: https://www.piwheels.org/simple/mah51-biopython/mah51_biopython-1.1-cp37-cp37m-linux_armv7l.whl#sha256=062dde60e1773af85ee7a816c168586d70003c1347761998e0fbd4b140a9b367 (from https://www.piwheels.org/simple/mah51-biopython/) (requires-python:>=3.7)
2022-05-11T07:26:31,003   Skipping link: No binaries permitted for mah51-biopython: https://www.piwheels.org/simple/mah51-biopython/mah51_biopython-1.1-cp37-cp37m-linux_armv6l.whl#sha256=062dde60e1773af85ee7a816c168586d70003c1347761998e0fbd4b140a9b367 (from https://www.piwheels.org/simple/mah51-biopython/) (requires-python:>=3.7)
2022-05-11T07:26:31,004 Skipping link: not a file: https://www.piwheels.org/simple/mah51-biopython/
2022-05-11T07:26:31,005 Skipping link: not a file: https://pypi.org/simple/mah51-biopython/
2022-05-11T07:26:31,049 Given no hashes to check 1 links for project 'mah51-biopython': discarding no candidates
2022-05-11T07:26:31,091 Collecting mah51-biopython==1.1
2022-05-11T07:26:31,096   Created temporary directory: /tmp/pip-unpack-9kqvho82
2022-05-11T07:26:31,191   Downloading mah51-biopython-1.1.tar.gz (14.7 MB)
2022-05-11T07:26:49,081   Added mah51-biopython==1.1 from https://files.pythonhosted.org/packages/f2/79/60d22aeb727a7420bf99d2c28a35898186c58be859193ad16b71520b0483/mah51-biopython-1.1.tar.gz#sha256=07509a21bbcc11a96c8491268347981bcb31796790fdf4f5f2e5e94ffcc4fc43 to build tracker '/tmp/pip-req-tracker-aq8ibgoy'
2022-05-11T07:26:49,083   Running setup.py (path:/tmp/pip-wheel-86xhj3e2/mah51-biopython_1604343afeac412694f71a6d4af176e0/setup.py) egg_info for package mah51-biopython
2022-05-11T07:26:49,085   Created temporary directory: /tmp/pip-pip-egg-info-3n8575qq
2022-05-11T07:26:49,085   Preparing metadata (setup.py): started
2022-05-11T07:26:49,087   Running command python setup.py egg_info
2022-05-11T07:26:51,136   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing '1.01' to '1.1'
2022-05-11T07:26:51,137     warnings.warn(tmpl.format(**locals()))
2022-05-11T07:26:51,175   running egg_info
2022-05-11T07:26:51,180   creating /tmp/pip-pip-egg-info-3n8575qq/mah51_biopython.egg-info
2022-05-11T07:26:51,195   writing manifest file '/tmp/pip-pip-egg-info-3n8575qq/mah51_biopython.egg-info/SOURCES.txt'
2022-05-11T07:26:54,838   warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2022-05-11T07:26:54,848   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2022-05-11T07:26:54,857   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2022-05-11T07:26:54,866   warning: no previously-included files matching '*.py{}' found anywhere in distribution
2022-05-11T07:26:54,876   warning: no previously-included files matching '*.py-e' found anywhere in distribution
2022-05-11T07:26:54,919   warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2022-05-11T07:26:55,113   writing manifest file '/tmp/pip-pip-egg-info-3n8575qq/mah51_biopython.egg-info/SOURCES.txt'
2022-05-11T07:26:55,254   Preparing metadata (setup.py): finished with status 'done'
2022-05-11T07:26:55,266   Source in /tmp/pip-wheel-86xhj3e2/mah51-biopython_1604343afeac412694f71a6d4af176e0 has version 1.1, which satisfies requirement mah51-biopython==1.1 from https://files.pythonhosted.org/packages/f2/79/60d22aeb727a7420bf99d2c28a35898186c58be859193ad16b71520b0483/mah51-biopython-1.1.tar.gz#sha256=07509a21bbcc11a96c8491268347981bcb31796790fdf4f5f2e5e94ffcc4fc43
2022-05-11T07:26:55,268   Removed mah51-biopython==1.1 from https://files.pythonhosted.org/packages/f2/79/60d22aeb727a7420bf99d2c28a35898186c58be859193ad16b71520b0483/mah51-biopython-1.1.tar.gz#sha256=07509a21bbcc11a96c8491268347981bcb31796790fdf4f5f2e5e94ffcc4fc43 from build tracker '/tmp/pip-req-tracker-aq8ibgoy'
2022-05-11T07:26:55,283 Created temporary directory: /tmp/pip-unpack-o19gpf2a
2022-05-11T07:26:55,284 Building wheels for collected packages: mah51-biopython
2022-05-11T07:26:55,293   Created temporary directory: /tmp/pip-wheel-68q2cf1i
2022-05-11T07:26:55,293   Building wheel for mah51-biopython (setup.py): started
2022-05-11T07:26:55,295   Destination directory: /tmp/pip-wheel-68q2cf1i
2022-05-11T07:26:55,296   Running command python setup.py bdist_wheel
2022-05-11T07:26:57,344   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:493: UserWarning: Normalizing '1.01' to '1.1'
2022-05-11T07:26:57,345     warnings.warn(tmpl.format(**locals()))
2022-05-11T07:26:57,437   running bdist_wheel
2022-05-11T07:26:57,824   running build
2022-05-11T07:26:57,824   running build_py
2022-05-11T07:26:57,833   creating build
2022-05-11T07:26:57,834   creating build/lib.linux-armv7l-3.9
2022-05-11T07:26:57,835   creating build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,837   copying Bio/kNN.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,842   copying Bio/File.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,846   copying Bio/MaxEntropy.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,850   copying Bio/NaiveBayes.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,854   copying Bio/LogisticRegression.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,857   copying Bio/Seq.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,868   copying Bio/SeqRecord.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,874   copying Bio/bgzf.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,879   copying Bio/pairwise2.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,885   copying Bio/MarkovModel.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,889   copying Bio/__init__.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,894   copying Bio/_utils.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,897   copying Bio/SeqFeature.py -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:26:57,905   creating build/lib.linux-armv7l-3.9/Bio/Affy
2022-05-11T07:26:57,907   copying Bio/Affy/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Affy
2022-05-11T07:26:57,910   copying Bio/Affy/CelFile.py -> build/lib.linux-armv7l-3.9/Bio/Affy
2022-05-11T07:26:57,916   creating build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,918   copying Bio/Align/mauve.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,922   copying Bio/Align/nexus.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,925   copying Bio/Align/psl.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,929   copying Bio/Align/AlignInfo.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,934   copying Bio/Align/phylip.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,938   copying Bio/Align/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,949   copying Bio/Align/maf.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,953   copying Bio/Align/fasta_m8.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,957   copying Bio/Align/stockholm.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,962   copying Bio/Align/msf.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,965   copying Bio/Align/bed.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,969   copying Bio/Align/clustal.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,973   copying Bio/Align/emboss.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,977   copying Bio/Align/interfaces.py -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:26:57,982   creating build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:57,984   copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:57,988   copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:57,992   copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:57,995   copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:57,998   copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:58,002   copying Bio/Align/Applications/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:58,005   copying Bio/Align/Applications/_Prank.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:58,009   copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:58,014   copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:58,018   copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-armv7l-3.9/Bio/Align/Applications
2022-05-11T07:26:58,023   creating build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices
2022-05-11T07:26:58,024   copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices
2022-05-11T07:26:58,031   creating build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,032   copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,037   copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,040   copying Bio/AlignIO/NexusIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,044   copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,048   copying Bio/AlignIO/__init__.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,053   copying Bio/AlignIO/MsfIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,058   copying Bio/AlignIO/MauveIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,062   copying Bio/AlignIO/MafIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,068   copying Bio/AlignIO/FastaIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,073   copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,078   copying Bio/AlignIO/Interfaces.py -> build/lib.linux-armv7l-3.9/Bio/AlignIO
2022-05-11T07:26:58,083   creating build/lib.linux-armv7l-3.9/Bio/Alphabet
2022-05-11T07:26:58,085   copying Bio/Alphabet/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Alphabet
2022-05-11T07:26:58,090   creating build/lib.linux-armv7l-3.9/Bio/Application
2022-05-11T07:26:58,092   copying Bio/Application/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Application
2022-05-11T07:26:58,099   creating build/lib.linux-armv7l-3.9/Bio/Blast
2022-05-11T07:26:58,101   copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-armv7l-3.9/Bio/Blast
2022-05-11T07:26:58,105   copying Bio/Blast/NCBIWWW.py -> build/lib.linux-armv7l-3.9/Bio/Blast
2022-05-11T07:26:58,109   copying Bio/Blast/Applications.py -> build/lib.linux-armv7l-3.9/Bio/Blast
2022-05-11T07:26:58,117   copying Bio/Blast/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Blast
2022-05-11T07:26:58,120   copying Bio/Blast/Record.py -> build/lib.linux-armv7l-3.9/Bio/Blast
2022-05-11T07:26:58,127   copying Bio/Blast/NCBIXML.py -> build/lib.linux-armv7l-3.9/Bio/Blast
2022-05-11T07:26:58,133   creating build/lib.linux-armv7l-3.9/Bio/CAPS
2022-05-11T07:26:58,135   copying Bio/CAPS/__init__.py -> build/lib.linux-armv7l-3.9/Bio/CAPS
2022-05-11T07:26:58,140   creating build/lib.linux-armv7l-3.9/Bio/Cluster
2022-05-11T07:26:58,142   copying Bio/Cluster/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Cluster
2022-05-11T07:26:58,150   creating build/lib.linux-armv7l-3.9/Bio/codonalign
2022-05-11T07:26:58,151   copying Bio/codonalign/chisq.py -> build/lib.linux-armv7l-3.9/Bio/codonalign
2022-05-11T07:26:58,154   copying Bio/codonalign/codonseq.py -> build/lib.linux-armv7l-3.9/Bio/codonalign
2022-05-11T07:26:58,160   copying Bio/codonalign/__init__.py -> build/lib.linux-armv7l-3.9/Bio/codonalign
2022-05-11T07:26:58,165   copying Bio/codonalign/codonalignment.py -> build/lib.linux-armv7l-3.9/Bio/codonalign
2022-05-11T07:26:58,170   creating build/lib.linux-armv7l-3.9/Bio/Compass
2022-05-11T07:26:58,171   copying Bio/Compass/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Compass
2022-05-11T07:26:58,176   creating build/lib.linux-armv7l-3.9/Bio/Data
2022-05-11T07:26:58,177   copying Bio/Data/IUPACData.py -> build/lib.linux-armv7l-3.9/Bio/Data
2022-05-11T07:26:58,181   copying Bio/Data/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Data
2022-05-11T07:26:58,184   copying Bio/Data/SCOPData.py -> build/lib.linux-armv7l-3.9/Bio/Data
2022-05-11T07:26:58,188   copying Bio/Data/CodonTable.py -> build/lib.linux-armv7l-3.9/Bio/Data
2022-05-11T07:26:58,195   creating build/lib.linux-armv7l-3.9/Bio/Emboss
2022-05-11T07:26:58,197   copying Bio/Emboss/Primer3.py -> build/lib.linux-armv7l-3.9/Bio/Emboss
2022-05-11T07:26:58,201   copying Bio/Emboss/Applications.py -> build/lib.linux-armv7l-3.9/Bio/Emboss
2022-05-11T07:26:58,206   copying Bio/Emboss/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Emboss
2022-05-11T07:26:58,209   copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-armv7l-3.9/Bio/Emboss
2022-05-11T07:26:58,213   creating build/lib.linux-armv7l-3.9/Bio/Entrez
2022-05-11T07:26:58,215   copying Bio/Entrez/Parser.py -> build/lib.linux-armv7l-3.9/Bio/Entrez
2022-05-11T07:26:58,221   copying Bio/Entrez/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Entrez
2022-05-11T07:26:58,226   creating build/lib.linux-armv7l-3.9/Bio/ExPASy
2022-05-11T07:26:58,228   copying Bio/ExPASy/Prodoc.py -> build/lib.linux-armv7l-3.9/Bio/ExPASy
2022-05-11T07:26:58,232   copying Bio/ExPASy/Enzyme.py -> build/lib.linux-armv7l-3.9/Bio/ExPASy
2022-05-11T07:26:58,235   copying Bio/ExPASy/__init__.py -> build/lib.linux-armv7l-3.9/Bio/ExPASy
2022-05-11T07:26:58,238   copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-armv7l-3.9/Bio/ExPASy
2022-05-11T07:26:58,242   copying Bio/ExPASy/Prosite.py -> build/lib.linux-armv7l-3.9/Bio/ExPASy
2022-05-11T07:26:58,246   copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-armv7l-3.9/Bio/ExPASy
2022-05-11T07:26:58,250   creating build/lib.linux-armv7l-3.9/Bio/GenBank
2022-05-11T07:26:58,252   copying Bio/GenBank/Scanner.py -> build/lib.linux-armv7l-3.9/Bio/GenBank
2022-05-11T07:26:58,260   copying Bio/GenBank/__init__.py -> build/lib.linux-armv7l-3.9/Bio/GenBank
2022-05-11T07:26:58,267   copying Bio/GenBank/Record.py -> build/lib.linux-armv7l-3.9/Bio/GenBank
2022-05-11T07:26:58,272   copying Bio/GenBank/utils.py -> build/lib.linux-armv7l-3.9/Bio/GenBank
2022-05-11T07:26:58,276   creating build/lib.linux-armv7l-3.9/Bio/Geo
2022-05-11T07:26:58,278   copying Bio/Geo/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Geo
2022-05-11T07:26:58,282   copying Bio/Geo/Record.py -> build/lib.linux-armv7l-3.9/Bio/Geo
2022-05-11T07:26:58,287   creating build/lib.linux-armv7l-3.9/Bio/Graphics
2022-05-11T07:26:58,289   copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-armv7l-3.9/Bio/Graphics
2022-05-11T07:26:58,294   copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-armv7l-3.9/Bio/Graphics
2022-05-11T07:26:58,301   copying Bio/Graphics/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Graphics
2022-05-11T07:26:58,304   copying Bio/Graphics/Comparative.py -> build/lib.linux-armv7l-3.9/Bio/Graphics
2022-05-11T07:26:58,307   copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-armv7l-3.9/Bio/Graphics
2022-05-11T07:26:58,311   copying Bio/Graphics/Distribution.py -> build/lib.linux-armv7l-3.9/Bio/Graphics
2022-05-11T07:26:58,315   copying Bio/Graphics/KGML_vis.py -> build/lib.linux-armv7l-3.9/Bio/Graphics
2022-05-11T07:26:58,321   creating build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,323   copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,329   copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,333   copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,338   copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,345   copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,348   copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,351   copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,355   copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,358   copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,361   copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,365   copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,368   copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-armv7l-3.9/Bio/Graphics/GenomeDiagram
2022-05-11T07:26:58,374   creating build/lib.linux-armv7l-3.9/Bio/HMM
2022-05-11T07:26:58,375   copying Bio/HMM/Utilities.py -> build/lib.linux-armv7l-3.9/Bio/HMM
2022-05-11T07:26:58,378   copying Bio/HMM/MarkovModel.py -> build/lib.linux-armv7l-3.9/Bio/HMM
2022-05-11T07:26:58,383   copying Bio/HMM/__init__.py -> build/lib.linux-armv7l-3.9/Bio/HMM
2022-05-11T07:26:58,386   copying Bio/HMM/Trainer.py -> build/lib.linux-armv7l-3.9/Bio/HMM
2022-05-11T07:26:58,390   copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-armv7l-3.9/Bio/HMM
2022-05-11T07:26:58,395   creating build/lib.linux-armv7l-3.9/Bio/KEGG
2022-05-11T07:26:58,397   copying Bio/KEGG/__init__.py -> build/lib.linux-armv7l-3.9/Bio/KEGG
2022-05-11T07:26:58,400   copying Bio/KEGG/REST.py -> build/lib.linux-armv7l-3.9/Bio/KEGG
2022-05-11T07:26:58,405   creating build/lib.linux-armv7l-3.9/Bio/KEGG/Compound
2022-05-11T07:26:58,406   copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-armv7l-3.9/Bio/KEGG/Compound
2022-05-11T07:26:58,411   creating build/lib.linux-armv7l-3.9/Bio/KEGG/Enzyme
2022-05-11T07:26:58,412   copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-armv7l-3.9/Bio/KEGG/Enzyme
2022-05-11T07:26:58,418   creating build/lib.linux-armv7l-3.9/Bio/KEGG/Gene
2022-05-11T07:26:58,419   copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-armv7l-3.9/Bio/KEGG/Gene
2022-05-11T07:26:58,424   creating build/lib.linux-armv7l-3.9/Bio/KEGG/Map
2022-05-11T07:26:58,425   copying Bio/KEGG/Map/__init__.py -> build/lib.linux-armv7l-3.9/Bio/KEGG/Map
2022-05-11T07:26:58,430   creating build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,430   creating build/lib.linux-armv7l-3.9/Bio/PDB/mmtf
2022-05-11T07:26:58,432   copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-armv7l-3.9/Bio/PDB/mmtf
2022-05-11T07:26:58,436   copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-armv7l-3.9/Bio/PDB/mmtf
2022-05-11T07:26:58,439   copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-armv7l-3.9/Bio/PDB/mmtf
2022-05-11T07:26:58,444   creating build/lib.linux-armv7l-3.9/Bio/KEGG/KGML
2022-05-11T07:26:58,455   copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-armv7l-3.9/Bio/KEGG/KGML
2022-05-11T07:26:58,458   copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-armv7l-3.9/Bio/KEGG/KGML
2022-05-11T07:26:58,495   copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-armv7l-3.9/Bio/KEGG/KGML
2022-05-11T07:26:58,499   creating build/lib.linux-armv7l-3.9/Bio/Medline
2022-05-11T07:26:58,501   copying Bio/Medline/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Medline
2022-05-11T07:26:58,507   creating build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,508   copying Bio/motifs/thresholds.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,512   copying Bio/motifs/clusterbuster.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,515   copying Bio/motifs/minimal.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,518   copying Bio/motifs/xms.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,521   copying Bio/motifs/matrix.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,526   copying Bio/motifs/meme.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,529   copying Bio/motifs/__init__.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,533   copying Bio/motifs/mast.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,537   copying Bio/motifs/alignace.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,540   copying Bio/motifs/transfac.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,543   copying Bio/motifs/pfm.py -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:26:58,549   creating build/lib.linux-armv7l-3.9/Bio/motifs/applications
2022-05-11T07:26:58,550   copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-armv7l-3.9/Bio/motifs/applications
2022-05-11T07:26:58,554   copying Bio/motifs/applications/__init__.py -> build/lib.linux-armv7l-3.9/Bio/motifs/applications
2022-05-11T07:26:58,558   creating build/lib.linux-armv7l-3.9/Bio/motifs/jaspar
2022-05-11T07:26:58,560   copying Bio/motifs/jaspar/db.py -> build/lib.linux-armv7l-3.9/Bio/motifs/jaspar
2022-05-11T07:26:58,565   copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-armv7l-3.9/Bio/motifs/jaspar
2022-05-11T07:26:58,571   creating build/lib.linux-armv7l-3.9/Bio/Nexus
2022-05-11T07:26:58,572   copying Bio/Nexus/Nexus.py -> build/lib.linux-armv7l-3.9/Bio/Nexus
2022-05-11T07:26:58,581   copying Bio/Nexus/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Nexus
2022-05-11T07:26:58,583   copying Bio/Nexus/Trees.py -> build/lib.linux-armv7l-3.9/Bio/Nexus
2022-05-11T07:26:58,589   copying Bio/Nexus/StandardData.py -> build/lib.linux-armv7l-3.9/Bio/Nexus
2022-05-11T07:26:58,592   copying Bio/Nexus/Nodes.py -> build/lib.linux-armv7l-3.9/Bio/Nexus
2022-05-11T07:26:58,598   creating build/lib.linux-armv7l-3.9/Bio/NMR
2022-05-11T07:26:58,599   copying Bio/NMR/xpktools.py -> build/lib.linux-armv7l-3.9/Bio/NMR
2022-05-11T07:26:58,604   copying Bio/NMR/__init__.py -> build/lib.linux-armv7l-3.9/Bio/NMR
2022-05-11T07:26:58,607   copying Bio/NMR/NOEtools.py -> build/lib.linux-armv7l-3.9/Bio/NMR
2022-05-11T07:26:58,611   creating build/lib.linux-armv7l-3.9/Bio/Pathway
2022-05-11T07:26:58,613   copying Bio/Pathway/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Pathway
2022-05-11T07:26:58,619   creating build/lib.linux-armv7l-3.9/Bio/Pathway/Rep
2022-05-11T07:26:58,621   copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-armv7l-3.9/Bio/Pathway/Rep
2022-05-11T07:26:58,625   copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Pathway/Rep
2022-05-11T07:26:58,629   copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-armv7l-3.9/Bio/Pathway/Rep
2022-05-11T07:26:58,638   copying Bio/PDB/Atom.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,643   copying Bio/PDB/DSSP.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,649   copying Bio/PDB/HSExposure.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,653   copying Bio/PDB/Chain.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,656   copying Bio/PDB/internal_coords.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,669   copying Bio/PDB/Selection.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,672   copying Bio/PDB/mmcifio.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,677   copying Bio/PDB/cealign.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,681   copying Bio/PDB/Residue.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,685   copying Bio/PDB/Structure.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,689   copying Bio/PDB/Polypeptide.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,693   copying Bio/PDB/FragmentMapper.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,698   copying Bio/PDB/StructureBuilder.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,703   copying Bio/PDB/qcprot.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,708   copying Bio/PDB/PDBParser.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,713   copying Bio/PDB/PDBList.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,718   copying Bio/PDB/Model.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,721   copying Bio/PDB/vectors.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,725   copying Bio/PDB/NeighborSearch.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,729   copying Bio/PDB/__init__.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,732   copying Bio/PDB/StructureAlignment.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,735   copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,739   copying Bio/PDB/Dice.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,742   copying Bio/PDB/ic_data.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,748   copying Bio/PDB/PDBExceptions.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,752   copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,757   copying Bio/PDB/Superimposer.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,761   copying Bio/PDB/PICIO.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,767   copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,771   copying Bio/PDB/MMCIFParser.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,776   copying Bio/PDB/Entity.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,780   copying Bio/PDB/SASA.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,783   copying Bio/PDB/NACCESS.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,787   copying Bio/PDB/SCADIO.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,792   copying Bio/PDB/PSEA.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,795   copying Bio/PDB/ic_rebuild.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,799   copying Bio/PDB/ResidueDepth.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,804   copying Bio/PDB/PDBIO.py -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:26:58,809   creating build/lib.linux-armv7l-3.9/Bio/phenotype
2022-05-11T07:26:58,810   copying Bio/phenotype/phen_micro.py -> build/lib.linux-armv7l-3.9/Bio/phenotype
2022-05-11T07:26:58,816   copying Bio/phenotype/__init__.py -> build/lib.linux-armv7l-3.9/Bio/phenotype
2022-05-11T07:26:58,820   copying Bio/phenotype/pm_fitting.py -> build/lib.linux-armv7l-3.9/Bio/phenotype
2022-05-11T07:26:58,824   creating build/lib.linux-armv7l-3.9/Bio/PopGen
2022-05-11T07:26:58,825   copying Bio/PopGen/__init__.py -> build/lib.linux-armv7l-3.9/Bio/PopGen
2022-05-11T07:26:58,830   creating build/lib.linux-armv7l-3.9/Bio/PopGen/GenePop
2022-05-11T07:26:58,831   copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-armv7l-3.9/Bio/PopGen/GenePop
2022-05-11T07:26:58,835   copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-armv7l-3.9/Bio/PopGen/GenePop
2022-05-11T07:26:58,839   copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-armv7l-3.9/Bio/PopGen/GenePop
2022-05-11T07:26:58,843   copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-armv7l-3.9/Bio/PopGen/GenePop
2022-05-11T07:26:58,846   copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-armv7l-3.9/Bio/PopGen/GenePop
2022-05-11T07:26:58,853   creating build/lib.linux-armv7l-3.9/Bio/Restriction
2022-05-11T07:26:58,854   copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-armv7l-3.9/Bio/Restriction
2022-05-11T07:26:58,884   copying Bio/Restriction/Restriction.py -> build/lib.linux-armv7l-3.9/Bio/Restriction
2022-05-11T07:26:58,891   copying Bio/Restriction/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Restriction
2022-05-11T07:26:58,895   copying Bio/Restriction/PrintFormat.py -> build/lib.linux-armv7l-3.9/Bio/Restriction
2022-05-11T07:26:58,901   creating build/lib.linux-armv7l-3.9/Bio/SCOP
2022-05-11T07:26:58,902   copying Bio/SCOP/Residues.py -> build/lib.linux-armv7l-3.9/Bio/SCOP
2022-05-11T07:26:58,906   copying Bio/SCOP/Raf.py -> build/lib.linux-armv7l-3.9/Bio/SCOP
2022-05-11T07:26:58,909   copying Bio/SCOP/Des.py -> build/lib.linux-armv7l-3.9/Bio/SCOP
2022-05-11T07:26:58,912   copying Bio/SCOP/Hie.py -> build/lib.linux-armv7l-3.9/Bio/SCOP
2022-05-11T07:26:58,916   copying Bio/SCOP/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SCOP
2022-05-11T07:26:58,922   copying Bio/SCOP/Dom.py -> build/lib.linux-armv7l-3.9/Bio/SCOP
2022-05-11T07:26:58,926   copying Bio/SCOP/Cla.py -> build/lib.linux-armv7l-3.9/Bio/SCOP
2022-05-11T07:26:58,930   creating build/lib.linux-armv7l-3.9/Bio/SearchIO
2022-05-11T07:26:58,931   copying Bio/SearchIO/BlatIO.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO
2022-05-11T07:26:58,937   copying Bio/SearchIO/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO
2022-05-11T07:26:58,942   copying Bio/SearchIO/_utils.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO
2022-05-11T07:26:58,945   copying Bio/SearchIO/FastaIO.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO
2022-05-11T07:26:58,950   copying Bio/SearchIO/_index.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO
2022-05-11T07:26:58,954   creating build/lib.linux-armv7l-3.9/Bio/SearchIO/_legacy
2022-05-11T07:26:58,955   copying Bio/SearchIO/_legacy/ParserSupport.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/_legacy
2022-05-11T07:26:58,959   copying Bio/SearchIO/_legacy/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/_legacy
2022-05-11T07:26:58,962   copying Bio/SearchIO/_legacy/NCBIStandalone.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/_legacy
2022-05-11T07:26:58,971   creating build/lib.linux-armv7l-3.9/Bio/SearchIO/_model
2022-05-11T07:26:58,972   copying Bio/SearchIO/_model/hit.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/_model
2022-05-11T07:26:58,977   copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/_model
2022-05-11T07:26:58,980   copying Bio/SearchIO/_model/query.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/_model
2022-05-11T07:26:58,986   copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/_model
2022-05-11T07:26:58,995   copying Bio/SearchIO/_model/_base.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/_model
2022-05-11T07:26:59,000   creating build/lib.linux-armv7l-3.9/Bio/SearchIO/BlastIO
2022-05-11T07:26:59,001   copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/BlastIO
2022-05-11T07:26:59,010   copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/BlastIO
2022-05-11T07:26:59,015   copying Bio/SearchIO/BlastIO/blast_text.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/BlastIO
2022-05-11T07:26:59,018   copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/BlastIO
2022-05-11T07:26:59,025   creating build/lib.linux-armv7l-3.9/Bio/SearchIO/HHsuiteIO
2022-05-11T07:26:59,027   copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/HHsuiteIO
2022-05-11T07:26:59,031   copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/HHsuiteIO
2022-05-11T07:26:59,035   creating build/lib.linux-armv7l-3.9/Bio/SearchIO/HmmerIO
2022-05-11T07:26:59,037   copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/HmmerIO
2022-05-11T07:26:59,041   copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/HmmerIO
2022-05-11T07:26:59,045   copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/HmmerIO
2022-05-11T07:26:59,050   copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/HmmerIO
2022-05-11T07:26:59,054   copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/HmmerIO
2022-05-11T07:26:59,059   copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/HmmerIO
2022-05-11T07:26:59,064   creating build/lib.linux-armv7l-3.9/Bio/SearchIO/ExonerateIO
2022-05-11T07:26:59,065   copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/ExonerateIO
2022-05-11T07:26:59,069   copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/ExonerateIO
2022-05-11T07:26:59,073   copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/ExonerateIO
2022-05-11T07:26:59,078   copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/ExonerateIO
2022-05-11T07:26:59,082   copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/ExonerateIO
2022-05-11T07:26:59,088   creating build/lib.linux-armv7l-3.9/Bio/SearchIO/InterproscanIO
2022-05-11T07:26:59,089   copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/InterproscanIO
2022-05-11T07:26:59,093   copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-armv7l-3.9/Bio/SearchIO/InterproscanIO
2022-05-11T07:26:59,100   creating build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,101   copying Bio/SeqIO/IgIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,105   copying Bio/SeqIO/SffIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,112   copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,116   copying Bio/SeqIO/QualityIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,125   copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,129   copying Bio/SeqIO/AceIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,132   copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,139   copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,143   copying Bio/SeqIO/AbiIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,148   copying Bio/SeqIO/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,154   copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,159   copying Bio/SeqIO/PhdIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,163   copying Bio/SeqIO/NibIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,167   copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,172   copying Bio/SeqIO/PirIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,176   copying Bio/SeqIO/SwissIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,180   copying Bio/SeqIO/GckIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,185   copying Bio/SeqIO/PdbIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,189   copying Bio/SeqIO/TabIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,192   copying Bio/SeqIO/FastaIO.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,197   copying Bio/SeqIO/Interfaces.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,200   copying Bio/SeqIO/_index.py -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:26:59,207   creating build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,209   copying Bio/SeqUtils/lcc.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,213   copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,217   copying Bio/SeqUtils/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,222   copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,228   copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,232   copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,236   copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,241   copying Bio/SeqUtils/CodonUsage.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,244   copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.linux-armv7l-3.9/Bio/SeqUtils
2022-05-11T07:26:59,248   creating build/lib.linux-armv7l-3.9/Bio/Sequencing
2022-05-11T07:26:59,250   copying Bio/Sequencing/Phd.py -> build/lib.linux-armv7l-3.9/Bio/Sequencing
2022-05-11T07:26:59,253   copying Bio/Sequencing/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Sequencing
2022-05-11T07:26:59,256   copying Bio/Sequencing/Ace.py -> build/lib.linux-armv7l-3.9/Bio/Sequencing
2022-05-11T07:26:59,262   creating build/lib.linux-armv7l-3.9/Bio/Sequencing/Applications
2022-05-11T07:26:59,263   copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-armv7l-3.9/Bio/Sequencing/Applications
2022-05-11T07:26:59,268   copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-armv7l-3.9/Bio/Sequencing/Applications
2022-05-11T07:26:59,272   copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-armv7l-3.9/Bio/Sequencing/Applications
2022-05-11T07:26:59,277   copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Sequencing/Applications
2022-05-11T07:26:59,281   creating build/lib.linux-armv7l-3.9/Bio/SVDSuperimposer
2022-05-11T07:26:59,283   copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SVDSuperimposer
2022-05-11T07:26:59,288   creating build/lib.linux-armv7l-3.9/Bio/PDB/QCPSuperimposer
2022-05-11T07:26:59,289   copying Bio/PDB/QCPSuperimposer/__init__.py -> build/lib.linux-armv7l-3.9/Bio/PDB/QCPSuperimposer
2022-05-11T07:26:59,294   creating build/lib.linux-armv7l-3.9/Bio/SwissProt
2022-05-11T07:26:59,296   copying Bio/SwissProt/KeyWList.py -> build/lib.linux-armv7l-3.9/Bio/SwissProt
2022-05-11T07:26:59,299   copying Bio/SwissProt/__init__.py -> build/lib.linux-armv7l-3.9/Bio/SwissProt
2022-05-11T07:26:59,305   creating build/lib.linux-armv7l-3.9/Bio/TogoWS
2022-05-11T07:26:59,306   copying Bio/TogoWS/__init__.py -> build/lib.linux-armv7l-3.9/Bio/TogoWS
2022-05-11T07:26:59,313   creating build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,314   copying Bio/Phylo/_io.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,318   copying Bio/Phylo/Newick.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,321   copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,329   copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,333   copying Bio/Phylo/NewickIO.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,337   copying Bio/Phylo/BaseTree.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,343   copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,348   copying Bio/Phylo/Consensus.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,352   copying Bio/Phylo/NexusIO.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,355   copying Bio/Phylo/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,358   copying Bio/Phylo/CDAO.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,361   copying Bio/Phylo/_utils.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,366   copying Bio/Phylo/CDAOIO.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,370   copying Bio/Phylo/PhyloXML.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,376   copying Bio/Phylo/NeXML.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,379   copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-armv7l-3.9/Bio/Phylo
2022-05-11T07:26:59,386   creating build/lib.linux-armv7l-3.9/Bio/Phylo/Applications
2022-05-11T07:26:59,387   copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/Applications
2022-05-11T07:26:59,392   copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/Applications
2022-05-11T07:26:59,395   copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/Applications
2022-05-11T07:26:59,400   copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/Applications
2022-05-11T07:26:59,406   creating build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,407   copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,412   copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,416   copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,420   copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,423   copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,427   copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,430   copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,434   copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,437   copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-armv7l-3.9/Bio/Phylo/PAML
2022-05-11T07:26:59,442   creating build/lib.linux-armv7l-3.9/Bio/UniGene
2022-05-11T07:26:59,444   copying Bio/UniGene/__init__.py -> build/lib.linux-armv7l-3.9/Bio/UniGene
2022-05-11T07:26:59,449   creating build/lib.linux-armv7l-3.9/Bio/UniProt
2022-05-11T07:26:59,450   copying Bio/UniProt/GOA.py -> build/lib.linux-armv7l-3.9/Bio/UniProt
2022-05-11T07:26:59,455   copying Bio/UniProt/__init__.py -> build/lib.linux-armv7l-3.9/Bio/UniProt
2022-05-11T07:26:59,459   creating build/lib.linux-armv7l-3.9/Bio/Wise
2022-05-11T07:26:59,461   copying Bio/Wise/dnal.py -> build/lib.linux-armv7l-3.9/Bio/Wise
2022-05-11T07:26:59,465   copying Bio/Wise/psw.py -> build/lib.linux-armv7l-3.9/Bio/Wise
2022-05-11T07:26:59,468   copying Bio/Wise/__init__.py -> build/lib.linux-armv7l-3.9/Bio/Wise
2022-05-11T07:26:59,473   creating build/lib.linux-armv7l-3.9/BioSQL
2022-05-11T07:26:59,475   copying BioSQL/BioSeq.py -> build/lib.linux-armv7l-3.9/BioSQL
2022-05-11T07:26:59,480   copying BioSQL/BioSeqDatabase.py -> build/lib.linux-armv7l-3.9/BioSQL
2022-05-11T07:26:59,485   copying BioSQL/__init__.py -> build/lib.linux-armv7l-3.9/BioSQL
2022-05-11T07:26:59,488   copying BioSQL/DBUtils.py -> build/lib.linux-armv7l-3.9/BioSQL
2022-05-11T07:26:59,492   copying BioSQL/Loader.py -> build/lib.linux-armv7l-3.9/BioSQL
2022-05-11T07:26:59,501   running egg_info
2022-05-11T07:27:03,127   warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2022-05-11T07:27:03,147   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2022-05-11T07:27:03,167   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2022-05-11T07:27:03,186   warning: no previously-included files matching '*.py{}' found anywhere in distribution
2022-05-11T07:27:03,205   warning: no previously-included files matching '*.py-e' found anywhere in distribution
2022-05-11T07:27:03,250   warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2022-05-11T07:27:03,520   writing manifest file 'mah51_biopython.egg-info/SOURCES.txt'
2022-05-11T07:27:03,718   copying Bio/cpairwise2module.c -> build/lib.linux-armv7l-3.9/Bio
2022-05-11T07:27:03,723   copying Bio/Align/_aligners.c -> build/lib.linux-armv7l-3.9/Bio/Align
2022-05-11T07:27:03,740   creating build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,741   copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,746   copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,749   copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,753   copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,757   copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,761   copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,765   copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,769   copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,773   copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,778   copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,781   copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,785   copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,789   copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,793   copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,797   copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,801   copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,805   copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,809   copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,813   copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,817   copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,821   copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,825   copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,829   copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,833   copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,837   copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,843   copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
2022-05-11T07:27:03,847   copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-armv7l-3.9/Bio/Align/substitution_matrices/data
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2022-05-11T07:27:05,189   copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,193   copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,198   copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,202   copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,207   copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,213   copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,218   copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,222   copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,226   copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,231   copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-armv7l-3.9/Bio/Entrez/DTDs
2022-05-11T07:27:05,236   creating build/lib.linux-armv7l-3.9/Bio/Entrez/XSDs
2022-05-11T07:27:05,238   copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-armv7l-3.9/Bio/Entrez/XSDs
2022-05-11T07:27:05,243   copying Bio/motifs/_pwm.c -> build/lib.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:27:05,247   copying Bio/Nexus/cnexus.c -> build/lib.linux-armv7l-3.9/Bio/Nexus
2022-05-11T07:27:05,252   copying Bio/PDB/ccealignmodule.c -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:27:05,257   copying Bio/PDB/kdtrees.c -> build/lib.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:27:05,264   copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:27:05,269   copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> build/lib.linux-armv7l-3.9/Bio/PDB/QCPSuperimposer
2022-05-11T07:27:05,358   running build_ext
2022-05-11T07:27:05,395   creating build/temp.linux-armv7l-3.9
2022-05-11T07:27:05,397   creating build/temp.linux-armv7l-3.9/Bio
2022-05-11T07:27:05,398   creating build/temp.linux-armv7l-3.9/Bio/Align
2022-05-11T07:27:05,400   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/Align/_aligners.c -o build/temp.linux-armv7l-3.9/Bio/Align/_aligners.o
2022-05-11T07:27:41,557   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/Align/_aligners.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/Align/_aligners.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:27:41,835   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/cpairwise2module.c -o build/temp.linux-armv7l-3.9/Bio/cpairwise2module.o
2022-05-11T07:27:42,521   Bio/cpairwise2module.c: In function ‘_get_match_score’:
2022-05-11T07:27:42,521   Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations]
2022-05-11T07:27:42,522      60 |     if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist)))
2022-05-11T07:27:42,522         |     ^~
2022-05-11T07:27:42,522   In file included from /usr/include/python3.9/Python.h:145,
2022-05-11T07:27:42,523                    from Bio/cpairwise2module.c:16:
2022-05-11T07:27:42,523   /usr/include/python3.9/ceval.h:17:43: note: declared here
2022-05-11T07:27:42,523      17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords(
2022-05-11T07:27:42,524         |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-05-11T07:27:43,894   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/cpairwise2.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:27:44,105   creating build/temp.linux-armv7l-3.9/Bio/Nexus
2022-05-11T07:27:44,106   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/Nexus/cnexus.c -o build/temp.linux-armv7l-3.9/Bio/Nexus/cnexus.o
2022-05-11T07:27:45,058   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/Nexus/cnexus.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:27:45,265   creating build/temp.linux-armv7l-3.9/Bio/PDB
2022-05-11T07:27:45,266   creating build/temp.linux-armv7l-3.9/Bio/PDB/QCPSuperimposer
2022-05-11T07:27:45,267   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-armv7l-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o
2022-05-11T07:27:46,402   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:27:46,610   creating build/temp.linux-armv7l-3.9/Bio/motifs
2022-05-11T07:27:46,612   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/motifs/_pwm.c -o build/temp.linux-armv7l-3.9/Bio/motifs/_pwm.o
2022-05-11T07:27:47,659   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/motifs/_pwm.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:27:47,868   creating build/temp.linux-armv7l-3.9/Bio/Cluster
2022-05-11T07:27:47,870   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/cluster.c -o build/temp.linux-armv7l-3.9/Bio/Cluster/cluster.o
2022-05-11T07:28:03,269   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/clustermodule.c -o build/temp.linux-armv7l-3.9/Bio/Cluster/clustermodule.o
2022-05-11T07:28:07,867   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/Cluster/cluster.o build/temp.linux-armv7l-3.9/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/Cluster/_cluster.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:28:08,116   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/kdtrees.c -o build/temp.linux-armv7l-3.9/Bio/PDB/kdtrees.o
2022-05-11T07:28:11,171   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/PDB/kdtrees.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:28:11,387   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-armv7l-3.9/Bio/PDB/ccealignmodule.o
2022-05-11T07:28:13,750   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/PDB/ccealign.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:28:13,963   creating build/temp.linux-armv7l-3.9/Bio/SeqIO
2022-05-11T07:28:13,966   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-armv7l-3.9/Bio/SeqIO/_twoBitIO.o
2022-05-11T07:28:15,186   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-3.9/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-armv7l-3.9/Bio/SeqIO/_twoBitIO.cpython-39-arm-linux-gnueabihf.so
2022-05-11T07:28:15,424   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-05-11T07:28:15,424     warnings.warn(
2022-05-11T07:28:15,429   running install
2022-05-11T07:28:15,493   running install_lib
2022-05-11T07:28:15,500   creating build/bdist.linux-armv7l
2022-05-11T07:28:15,501   creating build/bdist.linux-armv7l/wheel
2022-05-11T07:28:15,504   creating build/bdist.linux-armv7l/wheel/BioSQL
2022-05-11T07:28:15,532   creating build/bdist.linux-armv7l/wheel/Bio
2022-05-11T07:28:15,539   creating build/bdist.linux-armv7l/wheel/Bio/Entrez
2022-05-11T07:28:15,558   creating build/bdist.linux-armv7l/wheel/Bio/Entrez/DTDs
2022-05-11T07:28:16,690   creating build/bdist.linux-armv7l/wheel/Bio/Entrez/XSDs
2022-05-11T07:28:16,701   creating build/bdist.linux-armv7l/wheel/Bio/Compass
2022-05-11T07:28:16,707   creating build/bdist.linux-armv7l/wheel/Bio/UniProt
2022-05-11T07:28:16,721   creating build/bdist.linux-armv7l/wheel/Bio/Medline
2022-05-11T07:28:16,734   creating build/bdist.linux-armv7l/wheel/Bio/SCOP
2022-05-11T07:28:16,774   creating build/bdist.linux-armv7l/wheel/Bio/Wise
2022-05-11T07:28:16,793   creating build/bdist.linux-armv7l/wheel/Bio/phenotype
2022-05-11T07:28:16,813   creating build/bdist.linux-armv7l/wheel/Bio/SearchIO
2022-05-11T07:28:16,816   creating build/bdist.linux-armv7l/wheel/Bio/SearchIO/InterproscanIO
2022-05-11T07:28:16,825   creating build/bdist.linux-armv7l/wheel/Bio/SearchIO/HmmerIO
2022-05-11T07:28:16,860   creating build/bdist.linux-armv7l/wheel/Bio/SearchIO/BlastIO
2022-05-11T07:28:16,884   creating build/bdist.linux-armv7l/wheel/Bio/SearchIO/ExonerateIO
2022-05-11T07:28:16,907   creating build/bdist.linux-armv7l/wheel/Bio/SearchIO/HHsuiteIO
2022-05-11T07:28:16,920   creating build/bdist.linux-armv7l/wheel/Bio/SearchIO/_model
2022-05-11T07:28:16,943   creating build/bdist.linux-armv7l/wheel/Bio/SearchIO/_legacy
2022-05-11T07:28:16,965   creating build/bdist.linux-armv7l/wheel/Bio/Phylo
2022-05-11T07:28:16,983   creating build/bdist.linux-armv7l/wheel/Bio/Phylo/PAML
2022-05-11T07:28:17,068   creating build/bdist.linux-armv7l/wheel/Bio/Phylo/Applications
2022-05-11T07:28:17,111   creating build/bdist.linux-armv7l/wheel/Bio/Geo
2022-05-11T07:28:17,120   creating build/bdist.linux-armv7l/wheel/Bio/Blast
2022-05-11T07:28:17,149   creating build/bdist.linux-armv7l/wheel/Bio/SwissProt
2022-05-11T07:28:17,160   creating build/bdist.linux-armv7l/wheel/Bio/Align
2022-05-11T07:28:17,219   creating build/bdist.linux-armv7l/wheel/Bio/Align/Applications
2022-05-11T07:28:17,262   creating build/bdist.linux-armv7l/wheel/Bio/Align/substitution_matrices
2022-05-11T07:28:17,265   creating build/bdist.linux-armv7l/wheel/Bio/Align/substitution_matrices/data
2022-05-11T07:28:17,398   creating build/bdist.linux-armv7l/wheel/Bio/PDB
2022-05-11T07:28:17,456   creating build/bdist.linux-armv7l/wheel/Bio/PDB/QCPSuperimposer
2022-05-11T07:28:17,478   creating build/bdist.linux-armv7l/wheel/Bio/PDB/mmtf
2022-05-11T07:28:17,605   creating build/bdist.linux-armv7l/wheel/Bio/SeqIO
2022-05-11T07:28:17,718   creating build/bdist.linux-armv7l/wheel/Bio/Graphics
2022-05-11T07:28:17,739   creating build/bdist.linux-armv7l/wheel/Bio/Graphics/GenomeDiagram
2022-05-11T07:28:17,809   creating build/bdist.linux-armv7l/wheel/Bio/KEGG
2022-05-11T07:28:17,812   creating build/bdist.linux-armv7l/wheel/Bio/KEGG/KGML
2022-05-11T07:28:17,826   creating build/bdist.linux-armv7l/wheel/Bio/KEGG/Map
2022-05-11T07:28:17,835   creating build/bdist.linux-armv7l/wheel/Bio/KEGG/Gene
2022-05-11T07:28:17,846   creating build/bdist.linux-armv7l/wheel/Bio/KEGG/Enzyme
2022-05-11T07:28:17,852   creating build/bdist.linux-armv7l/wheel/Bio/KEGG/Compound
2022-05-11T07:28:17,865   creating build/bdist.linux-armv7l/wheel/Bio/SVDSuperimposer
2022-05-11T07:28:17,872   creating build/bdist.linux-armv7l/wheel/Bio/HMM
2022-05-11T07:28:17,895   creating build/bdist.linux-armv7l/wheel/Bio/Application
2022-05-11T07:28:17,903   creating build/bdist.linux-armv7l/wheel/Bio/codonalign
2022-05-11T07:28:17,925   creating build/bdist.linux-armv7l/wheel/Bio/motifs
2022-05-11T07:28:17,938   creating build/bdist.linux-armv7l/wheel/Bio/motifs/applications
2022-05-11T07:28:17,988   creating build/bdist.linux-armv7l/wheel/Bio/motifs/jaspar
2022-05-11T07:28:18,000   creating build/bdist.linux-armv7l/wheel/Bio/AlignIO
2022-05-11T07:28:18,049   creating build/bdist.linux-armv7l/wheel/Bio/PopGen
2022-05-11T07:28:18,051   creating build/bdist.linux-armv7l/wheel/Bio/PopGen/GenePop
2022-05-11T07:28:18,078   creating build/bdist.linux-armv7l/wheel/Bio/Cluster
2022-05-11T07:28:18,131   creating build/bdist.linux-armv7l/wheel/Bio/UniGene
2022-05-11T07:28:18,138   creating build/bdist.linux-armv7l/wheel/Bio/Restriction
2022-05-11T07:28:18,181   creating build/bdist.linux-armv7l/wheel/Bio/Pathway
2022-05-11T07:28:18,187   creating build/bdist.linux-armv7l/wheel/Bio/Pathway/Rep
2022-05-11T07:28:18,200   creating build/bdist.linux-armv7l/wheel/Bio/Emboss
2022-05-11T07:28:18,217   creating build/bdist.linux-armv7l/wheel/Bio/NMR
2022-05-11T07:28:18,229   creating build/bdist.linux-armv7l/wheel/Bio/TogoWS
2022-05-11T07:28:18,236   creating build/bdist.linux-armv7l/wheel/Bio/ExPASy
2022-05-11T07:28:18,259   creating build/bdist.linux-armv7l/wheel/Bio/Alphabet
2022-05-11T07:28:18,265   creating build/bdist.linux-armv7l/wheel/Bio/Affy
2022-05-11T07:28:18,275   creating build/bdist.linux-armv7l/wheel/Bio/Data
2022-05-11T07:28:18,295   creating build/bdist.linux-armv7l/wheel/Bio/CAPS
2022-05-11T07:28:18,301   creating build/bdist.linux-armv7l/wheel/Bio/Nexus
2022-05-11T07:28:18,334   creating build/bdist.linux-armv7l/wheel/Bio/GenBank
2022-05-11T07:28:18,362   creating build/bdist.linux-armv7l/wheel/Bio/SeqUtils
2022-05-11T07:28:18,413   creating build/bdist.linux-armv7l/wheel/Bio/Sequencing
2022-05-11T07:28:18,427   creating build/bdist.linux-armv7l/wheel/Bio/Sequencing/Applications
2022-05-11T07:28:18,447   running install_egg_info
2022-05-11T07:28:18,465   Copying mah51_biopython.egg-info to build/bdist.linux-armv7l/wheel/mah51_biopython-1.1-py3.9.egg-info
2022-05-11T07:28:18,489   running install_scripts
2022-05-11T07:28:23,378   Building wheel for mah51-biopython (setup.py): finished with status 'done'
2022-05-11T07:28:23,472   Created wheel for mah51-biopython: filename=mah51_biopython-1.1-cp39-cp39-linux_armv7l.whl size=2906058 sha256=3dcb34319768808d55ade6e01140fbdb86cdc3ab34655c1a898ca0fc36fad275
2022-05-11T07:28:23,474   Stored in directory: /tmp/pip-ephem-wheel-cache-16h63zrj/wheels/f6/3c/00/6c7809800f632306dcdfc6ae4801a253f3f773dd27e940df32
2022-05-11T07:28:23,553 Successfully built mah51-biopython
2022-05-11T07:28:23,791 Removed build tracker: '/tmp/pip-req-tracker-aq8ibgoy'