2022-05-12T06:06:31,406 Created temporary directory: /tmp/pip-ephem-wheel-cache-4fzp2sna 2022-05-12T06:06:31,412 Created temporary directory: /tmp/pip-req-tracker-pbsliri8 2022-05-12T06:06:31,413 Initialized build tracking at /tmp/pip-req-tracker-pbsliri8 2022-05-12T06:06:31,414 Created build tracker: /tmp/pip-req-tracker-pbsliri8 2022-05-12T06:06:31,414 Entered build tracker: /tmp/pip-req-tracker-pbsliri8 2022-05-12T06:06:31,415 Created temporary directory: /tmp/pip-wheel-nlhq99nb 2022-05-12T06:06:31,475 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-12T06:06:31,478 2 location(s) to search for versions of graftm: 2022-05-12T06:06:31,478 * https://pypi.org/simple/graftm/ 2022-05-12T06:06:31,478 * https://www.piwheels.org/simple/graftm/ 2022-05-12T06:06:31,479 Fetching project page and analyzing links: https://pypi.org/simple/graftm/ 2022-05-12T06:06:31,481 Getting page https://pypi.org/simple/graftm/ 2022-05-12T06:06:31,485 Found index url https://pypi.org/simple 2022-05-12T06:06:31,836 Found link https://files.pythonhosted.org/packages/cf/1e/71db19e29db1663a3c9bcd247df145b243e3f6d410195316b5b1c8ccfd21/graftm-0.5.0.tar.gz#sha256=63d0cd9dabd39fb6c33f624b35d317fc4bc5d49ea496cebed572013c73214194 (from https://pypi.org/simple/graftm/), version: 0.5.0 2022-05-12T06:06:31,838 Found link https://files.pythonhosted.org/packages/74/04/f648bab21ebd66b9cda9555d2c52f54dc2325378388e58e59a7019fc381e/graftm-0.5.2.tar.gz#sha256=c1ac274bbeed456db7d058924447e685e8e43e691a83188f651fd025e774aa88 (from https://pypi.org/simple/graftm/), version: 0.5.2 2022-05-12T06:06:31,838 Found link https://files.pythonhosted.org/packages/4a/e6/6f749f3c87cf6c1dcbc24ce4a72952b3ba4021230e5f545acc4afadd01e1/graftm-0.5.3.tar.gz#sha256=848af903ff523129010f5893c1d632aca725c5f6bd650211ba32a8de6caed63b (from https://pypi.org/simple/graftm/), version: 0.5.3 2022-05-12T06:06:31,839 Found link https://files.pythonhosted.org/packages/1b/50/61a17c245c4672fa5eb3226fef85199c89233cd0b4bb39863f91378213c8/graftm-0.5.4.tar.gz#sha256=4cc0bd2f606cff870d2628fa56dcb8afd466c9ba9642960ceaec69d913977edc (from https://pypi.org/simple/graftm/), version: 0.5.4 2022-05-12T06:06:31,840 Found link https://files.pythonhosted.org/packages/72/58/4b655687b9df5d8fccc5827483b87758829e9bcd39ca289f92d6f3ceda1e/graftm-0.6.0.tar.gz#sha256=0e63384237d9bee0d6d4984b4d0e0160e9df6b105e391fe9a40fd69f5e5cef44 (from https://pypi.org/simple/graftm/), version: 0.6.0 2022-05-12T06:06:31,841 Found link https://files.pythonhosted.org/packages/50/5b/018d941dccc3d7dfc5a05d2d3e53d3483307fbf209359cf89e12fadd5749/graftm-0.6.1.tar.gz#sha256=cf6448b8ffbdef86b4ba4847161ad1f09319dd6874ef6b2768ad73209d8b7521 (from https://pypi.org/simple/graftm/), version: 0.6.1 2022-05-12T06:06:31,842 Found link https://files.pythonhosted.org/packages/2a/fc/ddcdcab3a801c1f0d9454ab673aa30d0a6d320317119a81efd1b4bd6d1a5/graftm-0.6.3.tar.gz#sha256=378e199d11d97c6c4605c92499df72d334713acfdcf44f5fa172f733a95425f1 (from https://pypi.org/simple/graftm/), version: 0.6.3 2022-05-12T06:06:31,843 Found link https://files.pythonhosted.org/packages/c4/c5/9d8d9c596f3898544aa025e17090c0f1a5dec0220f6a7d3da992c45b234b/graftm-0.9.0.tar.gz#sha256=3ed20fab7c48ea046db57083190542e76fa19d37cc600845ad8f4666a49b286d (from https://pypi.org/simple/graftm/), version: 0.9.0 2022-05-12T06:06:31,844 Found link https://files.pythonhosted.org/packages/e3/fd/b797fa957c9d6ff08da532395ba98d3d725bbf39e229ce4a4b4c854cb390/graftm-0.9.1.tar.gz#sha256=4a7eadf9dbd4a225348170f0b38838236bf8205c73be4a8bf865a47aa2c5d16d (from https://pypi.org/simple/graftm/), version: 0.9.1 2022-05-12T06:06:31,845 Found link https://files.pythonhosted.org/packages/77/16/b13ed3f18c489fdca20d6e66d8a4b5e66d092ff42ed95e1d60ff9f459729/graftm-0.9.2.tar.gz#sha256=5b68fb56b35db4d00ab2235161bdde768fe7e7fea55410b332371ab8a5e0c473 (from https://pypi.org/simple/graftm/), version: 0.9.2 2022-05-12T06:06:31,846 Found link https://files.pythonhosted.org/packages/9b/78/9afad222dd333c937029a6e8c1e89eed22d2e9ed4c09a388079dd795824b/graftm-0.9.3.tar.gz#sha256=aeaaf3d7b53c85cf82cf7c8532301369afdf6a7d01936ed281b4ec22d3908174 (from https://pypi.org/simple/graftm/), version: 0.9.3 2022-05-12T06:06:31,846 Found link https://files.pythonhosted.org/packages/a6/1a/44564745af44ec8b416b523a87622e5ae5e9526a191b09cf75a97e28f9fe/graftm-0.9.4.tar.gz#sha256=8c7eb6148dfc95aa07514a3b19973a4d9e2e1663d0d4cc7b095ede936d967e84 (from https://pypi.org/simple/graftm/), version: 0.9.4 2022-05-12T06:06:31,847 Found link https://files.pythonhosted.org/packages/a4/23/26fed63cbfd34d145e622342863547b20a720e656b1f64242ead222d7537/graftm-0.9.5.tar.gz#sha256=58186601b1b56b52dac1ed9e308791abdec9612564c6a845b80807088fd446f6 (from https://pypi.org/simple/graftm/), version: 0.9.5 2022-05-12T06:06:31,848 Found link https://files.pythonhosted.org/packages/d3/45/fb464bff4ea40aae267c7f3f877b7d7fda506691d158aa7f60ed1ccc6bd2/graftm-0.10.1.tar.gz#sha256=622f99d5e6e3761e0b20caf371d3d3212dc330986c4a68c0d275552d347bce96 (from https://pypi.org/simple/graftm/), version: 0.10.1 2022-05-12T06:06:31,849 Found link https://files.pythonhosted.org/packages/cf/de/2ce62eaeb73fb73b9dafef4eca02a976d427de387f71dd2826b1808317c6/graftm-0.11.0.tar.gz#sha256=0fd1c44e1c363ce2ae2556e5011792a31acb6c0e44d88d5ddb10920fe9ddaeeb (from https://pypi.org/simple/graftm/), version: 0.11.0 2022-05-12T06:06:31,850 Found link https://files.pythonhosted.org/packages/05/d4/2e5f7283cbd155ba82a443dde25617b769ca50f476877a63891242979fbd/graftm-0.11.1.tar.gz#sha256=b3b83d7dff5f3de573745ceda53b148fd2e58cc674e841e5802316d0b471744b (from https://pypi.org/simple/graftm/), version: 0.11.1 2022-05-12T06:06:31,851 Found link https://files.pythonhosted.org/packages/ee/c2/89c74e969769b21b31d0d6032155fcbae9a3058f55583ca6c216172befe6/graftm-0.12.0.tar.gz#sha256=7757f773311ef72f9129acac7c86b76411fb988fefd9aeba8c53c097dcc7b819 (from https://pypi.org/simple/graftm/), version: 0.12.0 2022-05-12T06:06:31,852 Found link https://files.pythonhosted.org/packages/70/29/db59b6bea48d909460a44e38705f38da052f95b3031919c119157afd283c/graftm-0.12.1.tar.gz#sha256=4bfe0d70f4a63208651e0982e20faff2767628503215ac1e7be3190bbc62e84b (from https://pypi.org/simple/graftm/), version: 0.12.1 2022-05-12T06:06:31,853 Found link https://files.pythonhosted.org/packages/cd/9f/400a7c8d3bf9f21b638c5412a3b39f6f4d7af99bd751c16e4df4dffa0365/graftm-0.12.2.tar.gz#sha256=1abd88e256ac552359b84fadfc6060169320c65fa1ecb4cf0105a3015ae4f0a9 (from https://pypi.org/simple/graftm/), version: 0.12.2 2022-05-12T06:06:31,853 Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/1d/c8/7f2d3d8039956a6ca4a5242e65408ec5ccabf848de20fbab9ef293ff5707/graftm-0.13.1-py3-none-any.whl#sha256=54ef11fe7098cea440997a2a33e9f2a1e072c7491f86e7323e66c8fe20971e2b (from https://pypi.org/simple/graftm/) 2022-05-12T06:06:31,854 Found link https://files.pythonhosted.org/packages/2b/32/e48cfc4fa2fc331b996bb821fb5485baab629bc90d48d4621a7543725f3a/graftm-0.13.1.tar.gz#sha256=df598aac0621bbb49ca6d0672634cb82d37ba855f21a477fe51e8352110e9c9c (from https://pypi.org/simple/graftm/), version: 0.13.1 2022-05-12T06:06:31,855 Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/91/17/24c77ca3d4debec95611633f44120cb789be1398acae34a8a0ea35b40cca/graftm-0.14.0-py3-none-any.whl#sha256=4397736fb0429603bb8abf07d99d5f83a5735863562fa6935dd9ba392eac6901 (from https://pypi.org/simple/graftm/) 2022-05-12T06:06:31,856 Found link https://files.pythonhosted.org/packages/63/52/3e79be958516522aa48f137a07a777e763453013ebbc7572a6e180461a1d/graftm-0.14.0.tar.gz#sha256=326270bda534f85f10f748573fa7b51ebbb9b654a1edcbac1c8811f96293419f (from https://pypi.org/simple/graftm/), version: 0.14.0 2022-05-12T06:06:31,856 Fetching project page and analyzing links: https://www.piwheels.org/simple/graftm/ 2022-05-12T06:06:31,857 Getting page https://www.piwheels.org/simple/graftm/ 2022-05-12T06:06:31,860 Found index url https://www.piwheels.org/simple 2022-05-12T06:06:32,120 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.13.1-py3-none-any.whl#sha256=54ef11fe7098cea440997a2a33e9f2a1e072c7491f86e7323e66c8fe20971e2b (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,121 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.2-py3-none-any.whl#sha256=fc902b78b560a8c57f1033ebad70615d1e9ee36d4f6d28e7f22dee5d12858cb6 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,122 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.1-py3-none-any.whl#sha256=0f175062375a657321453af41daeded35d2125c437916fb48f96b6bbea6fd0d6 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,122 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.0-py3-none-any.whl#sha256=2a42e4a46bf20cb0eec97d47c57480400bb9960207048293089cdb5f80cff3b1 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,123 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.11.1-py3-none-any.whl#sha256=834769724ca84a4d3f832356411c6b1b1fde9558552b47673dce4a4a8d9b2762 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,124 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.11.0-py3-none-any.whl#sha256=96555eec3fa770a90d6c2f49ee30bf551b72cdb2f585722070e96fcf06932d54 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,124 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.10.1-py3-none-any.whl#sha256=a6eb49f2f793418b6bc9b3c68d8b256967fa2db3198a0c25a8f18d7f82906955 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,125 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.5-py3-none-any.whl#sha256=de155e8f64ea68fc88ff78c2b7cdab6fd85563e43cd50cb5e88df7abcfc813a8 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,125 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.4-py3-none-any.whl#sha256=e73ceab33e2600b85aa818597ea6ccbbff5cc96053dbeb78e62130dcc78d5430 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,126 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.3-py3-none-any.whl#sha256=091aeb22cff06ef6d5c22956708686271669e83abfefcf4a15fafafbb829fc00 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,126 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.2-py3-none-any.whl#sha256=7b074dcfa75788c11263d9d593d29255d686b145af754746f52f12966555fbdc (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,127 Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.1-py3-none-any.whl#sha256=f1540f8a25064d0f18b0a75f1b25983944ce06cc5cbedf9588733a27a136cc77 (from https://www.piwheels.org/simple/graftm/) 2022-05-12T06:06:32,165 Given no hashes to check 1 links for project 'graftm': discarding no candidates 2022-05-12T06:06:32,198 Collecting graftm==0.14.0 2022-05-12T06:06:32,202 Created temporary directory: /tmp/pip-unpack-kl2lvhzy 2022-05-12T06:06:33,134 Downloading graftm-0.14.0.tar.gz (12.5 MB) 2022-05-12T06:06:44,797 Added graftm==0.14.0 from https://files.pythonhosted.org/packages/63/52/3e79be958516522aa48f137a07a777e763453013ebbc7572a6e180461a1d/graftm-0.14.0.tar.gz#sha256=326270bda534f85f10f748573fa7b51ebbb9b654a1edcbac1c8811f96293419f to build tracker '/tmp/pip-req-tracker-pbsliri8' 2022-05-12T06:06:44,801 Running setup.py (path:/tmp/pip-wheel-nlhq99nb/graftm_359702df833c4e29a11525ce42d12470/setup.py) egg_info for package graftm 2022-05-12T06:06:44,804 Created temporary directory: /tmp/pip-pip-egg-info-ur83q4yl 2022-05-12T06:06:44,805 Running command python setup.py egg_info 2022-05-12T06:06:50,261 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2022-05-12T06:06:52,804 running egg_info 2022-05-12T06:06:52,809 creating /tmp/pip-pip-egg-info-ur83q4yl/graftm.egg-info 2022-05-12T06:06:52,812 writing top-level names to /tmp/pip-pip-egg-info-ur83q4yl/graftm.egg-info/top_level.txt 2022-05-12T06:06:52,815 writing dependency_links to /tmp/pip-pip-egg-info-ur83q4yl/graftm.egg-info/dependency_links.txt 2022-05-12T06:06:52,818 writing /tmp/pip-pip-egg-info-ur83q4yl/graftm.egg-info/PKG-INFO 2022-05-12T06:06:52,824 writing requirements to /tmp/pip-pip-egg-info-ur83q4yl/graftm.egg-info/requires.txt 2022-05-12T06:06:52,827 writing manifest file '/tmp/pip-pip-egg-info-ur83q4yl/graftm.egg-info/SOURCES.txt' 2022-05-12T06:06:53,183 reading manifest file '/tmp/pip-pip-egg-info-ur83q4yl/graftm.egg-info/SOURCES.txt' 2022-05-12T06:06:53,234 reading manifest template 'MANIFEST.in' 2022-05-12T06:06:53,240 /usr/lib/python3.5/distutils/dist.py:261: UserWarning: Unknown distribution option: 'description_content_type' 2022-05-12T06:06:53,242 warnings.warn(msg) 2022-05-12T06:06:53,243 warning: no files found matching '*.txt' under directory 'examples' 2022-05-12T06:06:53,244 warning: no files found matching '*.py' under directory 'examples' 2022-05-12T06:06:53,507 writing manifest file '/tmp/pip-pip-egg-info-ur83q4yl/graftm.egg-info/SOURCES.txt' 2022-05-12T06:06:53,670 Source in /tmp/pip-wheel-nlhq99nb/graftm_359702df833c4e29a11525ce42d12470 has version 0.14.0, which satisfies requirement graftm==0.14.0 from https://files.pythonhosted.org/packages/63/52/3e79be958516522aa48f137a07a777e763453013ebbc7572a6e180461a1d/graftm-0.14.0.tar.gz#sha256=326270bda534f85f10f748573fa7b51ebbb9b654a1edcbac1c8811f96293419f 2022-05-12T06:06:53,672 Removed graftm==0.14.0 from https://files.pythonhosted.org/packages/63/52/3e79be958516522aa48f137a07a777e763453013ebbc7572a6e180461a1d/graftm-0.14.0.tar.gz#sha256=326270bda534f85f10f748573fa7b51ebbb9b654a1edcbac1c8811f96293419f from build tracker '/tmp/pip-req-tracker-pbsliri8' 2022-05-12T06:06:53,683 Created temporary directory: /tmp/pip-unpack-bqzse3po 2022-05-12T06:06:53,684 Building wheels for collected packages: graftm 2022-05-12T06:06:53,693 Created temporary directory: /tmp/pip-wheel-95lc_wpm 2022-05-12T06:06:53,694 Building wheel for graftm (setup.py): started 2022-05-12T06:06:53,694 Destination directory: /tmp/pip-wheel-95lc_wpm 2022-05-12T06:06:53,695 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nlhq99nb/graftm_359702df833c4e29a11525ce42d12470/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nlhq99nb/graftm_359702df833c4e29a11525ce42d12470/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-95lc_wpm 2022-05-12T06:06:56,818 /usr/lib/python3.5/distutils/dist.py:261: UserWarning: Unknown distribution option: 'description_content_type' 2022-05-12T06:06:56,820 warnings.warn(msg) 2022-05-12T06:06:57,175 running bdist_wheel 2022-05-12T06:06:57,193 running build 2022-05-12T06:06:57,194 running build_py 2022-05-12T06:06:57,525 creating build 2022-05-12T06:06:57,526 creating build/lib 2022-05-12T06:06:57,527 creating build/lib/graftm 2022-05-12T06:06:57,530 copying graftm/readHmmTable.py -> build/lib/graftm 2022-05-12T06:06:57,534 copying graftm/create.py -> build/lib/graftm 2022-05-12T06:06:57,542 copying graftm/sequence_search_results.py -> build/lib/graftm 2022-05-12T06:06:57,548 copying graftm/sequence_io.py -> build/lib/graftm 2022-05-12T06:06:57,553 copying graftm/pplacer.py -> build/lib/graftm 2022-05-12T06:06:57,561 copying graftm/reannotator.py -> build/lib/graftm 2022-05-12T06:06:57,566 copying graftm/getaxnseq.py -> build/lib/graftm 2022-05-12T06:06:57,571 copying graftm/classify.py -> build/lib/graftm 2022-05-12T06:06:57,576 copying graftm/version.py -> build/lib/graftm 2022-05-12T06:06:57,579 copying graftm/graftm_output_paths.py -> build/lib/graftm 2022-05-12T06:06:57,583 copying graftm/clusterer.py -> build/lib/graftm 2022-05-12T06:06:57,589 copying graftm/external_program_suite.py -> build/lib/graftm 2022-05-12T06:06:57,595 copying graftm/expand_searcher.py -> build/lib/graftm 2022-05-12T06:06:57,601 copying graftm/update.py -> build/lib/graftm 2022-05-12T06:06:57,607 copying graftm/unpack_sequences.py -> build/lib/graftm 2022-05-12T06:06:57,613 copying graftm/timeit.py -> build/lib/graftm 2022-05-12T06:06:57,618 copying graftm/db_search_results.py -> build/lib/graftm 2022-05-12T06:06:57,623 copying graftm/summarise.py -> build/lib/graftm 2022-05-12T06:06:57,629 copying graftm/sequence_searcher.py -> build/lib/graftm 2022-05-12T06:06:57,638 copying graftm/dendropy_tree_cleaner.py -> build/lib/graftm 2022-05-12T06:06:57,642 copying graftm/orfm.py -> build/lib/graftm 2022-05-12T06:06:57,646 copying graftm/decoy_filter.py -> build/lib/graftm 2022-05-12T06:06:57,651 copying graftm/tree_decorator.py -> build/lib/graftm 2022-05-12T06:06:57,657 copying graftm/hmmsearcher.py -> build/lib/graftm 2022-05-12T06:06:57,663 copying graftm/taxonomy_extractor.py -> build/lib/graftm 2022-05-12T06:06:57,668 copying graftm/rerooter.py -> build/lib/graftm 2022-05-12T06:06:57,673 copying graftm/archive.py -> build/lib/graftm 2022-05-12T06:06:57,677 copying graftm/sequence_extractor.py -> build/lib/graftm 2022-05-12T06:06:57,681 copying graftm/__init__.py -> build/lib/graftm 2022-05-12T06:06:57,684 copying graftm/decorator.py -> build/lib/graftm 2022-05-12T06:06:57,688 copying graftm/run.py -> build/lib/graftm 2022-05-12T06:06:57,698 copying graftm/housekeeping.py -> build/lib/graftm 2022-05-12T06:06:57,705 copying graftm/diamond.py -> build/lib/graftm 2022-05-12T06:06:57,710 copying graftm/deduplicator.py -> build/lib/graftm 2022-05-12T06:06:57,713 copying graftm/search_table.py -> build/lib/graftm 2022-05-12T06:06:57,718 copying graftm/graftm_package.py -> build/lib/graftm 2022-05-12T06:06:57,723 copying graftm/greengenes_taxonomy.py -> build/lib/graftm 2022-05-12T06:06:57,727 copying graftm/taxonomy_cleaner.py -> build/lib/graftm 2022-05-12T06:06:57,743 running build_scripts 2022-05-12T06:06:57,744 creating build/scripts-3.5 2022-05-12T06:06:57,747 copying and adjusting bin/graftM -> build/scripts-3.5 2022-05-12T06:06:57,755 changing mode of build/scripts-3.5/graftM from 644 to 755 2022-05-12T06:06:57,760 installing to build/bdist.linux-armv7l/wheel 2022-05-12T06:06:57,761 running install 2022-05-12T06:06:57,763 running install_lib 2022-05-12T06:06:57,771 creating build/bdist.linux-armv7l 2022-05-12T06:06:57,771 creating build/bdist.linux-armv7l/wheel 2022-05-12T06:06:57,776 creating build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,778 copying build/lib/graftm/readHmmTable.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,783 copying build/lib/graftm/create.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,791 copying build/lib/graftm/sequence_search_results.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,797 copying build/lib/graftm/sequence_io.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,802 copying build/lib/graftm/pplacer.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,810 copying build/lib/graftm/reannotator.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,814 copying build/lib/graftm/getaxnseq.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,819 copying build/lib/graftm/classify.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,824 copying build/lib/graftm/version.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,828 copying build/lib/graftm/graftm_output_paths.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,833 copying build/lib/graftm/clusterer.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,840 copying build/lib/graftm/external_program_suite.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,845 copying build/lib/graftm/expand_searcher.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,852 copying build/lib/graftm/update.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,859 copying build/lib/graftm/unpack_sequences.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,865 copying build/lib/graftm/timeit.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,870 copying build/lib/graftm/db_search_results.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,876 copying build/lib/graftm/summarise.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,883 copying build/lib/graftm/sequence_searcher.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,895 copying build/lib/graftm/dendropy_tree_cleaner.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,901 copying build/lib/graftm/orfm.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,907 copying build/lib/graftm/decoy_filter.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,913 copying build/lib/graftm/tree_decorator.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,921 copying build/lib/graftm/hmmsearcher.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,928 copying build/lib/graftm/taxonomy_extractor.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,935 copying build/lib/graftm/rerooter.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,942 copying build/lib/graftm/archive.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,949 copying build/lib/graftm/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,956 copying build/lib/graftm/__init__.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,962 copying build/lib/graftm/decorator.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,969 copying build/lib/graftm/run.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,980 copying build/lib/graftm/housekeeping.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,988 copying build/lib/graftm/diamond.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:57,995 copying build/lib/graftm/deduplicator.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:58,002 copying build/lib/graftm/search_table.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:58,011 copying build/lib/graftm/graftm_package.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:58,022 copying build/lib/graftm/greengenes_taxonomy.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:58,029 copying build/lib/graftm/taxonomy_cleaner.py -> build/bdist.linux-armv7l/wheel/graftm 2022-05-12T06:06:58,034 running install_data 2022-05-12T06:06:58,082 creating build/bdist.linux-armv7l/wheel/graftm-0.14.0.data 2022-05-12T06:06:58,083 creating build/bdist.linux-armv7l/wheel/graftm-0.14.0.data/data 2022-05-12T06:06:58,086 creating build/bdist.linux-armv7l/wheel/graftm-0.14.0.data/data/share 2022-05-12T06:06:58,090 copying share/18S.hmm -> build/bdist.linux-armv7l/wheel/graftm-0.14.0.data/data/share 2022-05-12T06:06:58,133 running install_egg_info 2022-05-12T06:06:58,152 running egg_info 2022-05-12T06:06:58,154 writing dependency_links to graftm.egg-info/dependency_links.txt 2022-05-12T06:06:58,158 writing graftm.egg-info/PKG-INFO 2022-05-12T06:06:58,164 writing requirements to graftm.egg-info/requires.txt 2022-05-12T06:06:58,167 writing top-level names to graftm.egg-info/top_level.txt 2022-05-12T06:06:58,186 reading manifest file 'graftm.egg-info/SOURCES.txt' 2022-05-12T06:06:58,200 reading manifest template 'MANIFEST.in' 2022-05-12T06:06:58,203 warning: no files found matching '*.txt' under directory 'examples' 2022-05-12T06:06:58,204 warning: no files found matching '*.py' under directory 'examples' 2022-05-12T06:06:58,398 writing manifest file 'graftm.egg-info/SOURCES.txt' 2022-05-12T06:06:58,402 Copying graftm.egg-info to build/bdist.linux-armv7l/wheel/graftm-0.14.0-py3.5.egg-info 2022-05-12T06:06:58,427 running install_scripts 2022-05-12T06:06:58,429 creating build/bdist.linux-armv7l/wheel/graftm-0.14.0.data/scripts 2022-05-12T06:06:58,431 copying build/scripts-3.5/graftM -> build/bdist.linux-armv7l/wheel/graftm-0.14.0.data/scripts 2022-05-12T06:06:58,439 changing mode of build/bdist.linux-armv7l/wheel/graftm-0.14.0.data/scripts/graftM to 755 2022-05-12T06:06:58,518 creating build/bdist.linux-armv7l/wheel/graftm-0.14.0.dist-info/WHEEL 2022-05-12T06:06:59,055 Building wheel for graftm (setup.py): finished with status 'done' 2022-05-12T06:06:59,062 Created wheel for graftm: filename=graftm-0.14.0-py3-none-any.whl size=197870 sha256=7a82ccaa98c671484d055482090b012badab234534266066179a71a9c61df7ef 2022-05-12T06:06:59,063 Stored in directory: /tmp/pip-ephem-wheel-cache-4fzp2sna/wheels/e3/8f/58/79feebcfbffd4202c3177dc6f68d2994c32b38c2dc7019ba67 2022-05-12T06:06:59,086 Successfully built graftm 2022-05-12T06:06:59,124 Removed build tracker: '/tmp/pip-req-tracker-pbsliri8'