2022-05-18T09:19:32,939 Created temporary directory: /tmp/pip-ephem-wheel-cache-yofniz2r 2022-05-18T09:19:32,946 Created temporary directory: /tmp/pip-build-tracker-cue6qen6 2022-05-18T09:19:32,947 Initialized build tracking at /tmp/pip-build-tracker-cue6qen6 2022-05-18T09:19:32,947 Created build tracker: /tmp/pip-build-tracker-cue6qen6 2022-05-18T09:19:32,948 Entered build tracker: /tmp/pip-build-tracker-cue6qen6 2022-05-18T09:19:32,949 Created temporary directory: /tmp/pip-wheel-06lfhv59 2022-05-18T09:19:33,012 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-18T09:19:33,021 2 location(s) to search for versions of py-cortex-api: 2022-05-18T09:19:33,021 * https://pypi.org/simple/py-cortex-api/ 2022-05-18T09:19:33,021 * https://www.piwheels.org/simple/py-cortex-api/ 2022-05-18T09:19:33,022 Fetching project page and analyzing links: https://pypi.org/simple/py-cortex-api/ 2022-05-18T09:19:33,023 Getting page https://pypi.org/simple/py-cortex-api/ 2022-05-18T09:19:33,026 Found index url https://pypi.org/simple 2022-05-18T09:19:33,137 Found link https://files.pythonhosted.org/packages/10/9a/15dd2926e462ede2596498e7fdaff6177f47a0a3e0e7d55809a295c7c2e0/py-cortex-api-1.0.tar.gz#sha256=9bf62eb4e0ac6862644c7b7842a3e381a5b72474331ce885c612ac2302c69bfa (from https://pypi.org/simple/py-cortex-api/), version: 1.0 2022-05-18T09:19:33,138 Found link https://files.pythonhosted.org/packages/4f/9b/5df6d4526ebcc12ee6d6a932150243ea6d74e7749b813b898504c51e8fd4/py-cortex-api-2.0.0.tar.gz#sha256=050f4f91430ad306a67334e83571b08dcd0826e32c6b76243471e4598e64277b (from https://pypi.org/simple/py-cortex-api/), version: 2.0.0 2022-05-18T09:19:33,139 Found link https://files.pythonhosted.org/packages/0f/73/39f8d4af8a1819908811755effc9ef16e8a650360e4d9a97aa9f57a24010/py-cortex-api-2.1.0.tar.gz#sha256=8ccc15baf69b10614b917c557a62e6badf3e765da07c80b5fcf5306e6351ddd9 (from https://pypi.org/simple/py-cortex-api/), version: 2.1.0 2022-05-18T09:19:33,139 Found link https://files.pythonhosted.org/packages/8a/0b/c81cf0f0feeda39cc42e7551864635ac911a3312406d3d68e836b1058a5e/py-cortex-api-2.2.0.tar.gz#sha256=390c8678419572d82656c07f0eb3e44ee2b862ae775ab514ef6dd2677de0fd8c (from https://pypi.org/simple/py-cortex-api/), version: 2.2.0 2022-05-18T09:19:33,140 Found link https://files.pythonhosted.org/packages/85/e6/39478462ebcc183ec04acf85dfda6ef3a6cc3b8dd783b50432014170844f/py-cortex-api-2.2.1.tar.gz#sha256=fe239347e1b3c4734c8d328bc0cc810ecc8323d6157c3a56f5e276e262d467f5 (from https://pypi.org/simple/py-cortex-api/), version: 2.2.1 2022-05-18T09:19:33,141 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-cortex-api/ 2022-05-18T09:19:33,142 Getting page https://www.piwheels.org/simple/py-cortex-api/ 2022-05-18T09:19:33,143 Found index url https://www.piwheels.org/simple 2022-05-18T09:19:33,349 Skipping link: not a file: https://www.piwheels.org/simple/py-cortex-api/ 2022-05-18T09:19:33,350 Skipping link: not a file: https://pypi.org/simple/py-cortex-api/ 2022-05-18T09:19:33,391 Given no hashes to check 1 links for project 'py-cortex-api': discarding no candidates 2022-05-18T09:19:33,429 Collecting py-cortex-api==2.2.1 2022-05-18T09:19:33,433 Created temporary directory: /tmp/pip-unpack-9tfahxk8 2022-05-18T09:19:33,524 Downloading py-cortex-api-2.2.1.tar.gz (17 kB) 2022-05-18T09:19:33,611 Added py-cortex-api==2.2.1 from https://files.pythonhosted.org/packages/85/e6/39478462ebcc183ec04acf85dfda6ef3a6cc3b8dd783b50432014170844f/py-cortex-api-2.2.1.tar.gz#sha256=fe239347e1b3c4734c8d328bc0cc810ecc8323d6157c3a56f5e276e262d467f5 to build tracker '/tmp/pip-build-tracker-cue6qen6' 2022-05-18T09:19:33,614 Running setup.py (path:/tmp/pip-wheel-06lfhv59/py-cortex-api_5e510b5a899743e7b39894efccaa60c8/setup.py) egg_info for package py-cortex-api 2022-05-18T09:19:33,615 Created temporary directory: /tmp/pip-pip-egg-info-kmwftgib 2022-05-18T09:19:33,616 Preparing metadata (setup.py): started 2022-05-18T09:19:33,618 Running command python setup.py egg_info 2022-05-18T09:19:40,533 running egg_info 2022-05-18T09:19:40,538 creating /tmp/pip-pip-egg-info-kmwftgib/py_cortex_api.egg-info 2022-05-18T09:19:41,140 writing /tmp/pip-pip-egg-info-kmwftgib/py_cortex_api.egg-info/PKG-INFO 2022-05-18T09:19:41,705 writing dependency_links to /tmp/pip-pip-egg-info-kmwftgib/py_cortex_api.egg-info/dependency_links.txt 2022-05-18T09:19:44,494 writing requirements to /tmp/pip-pip-egg-info-kmwftgib/py_cortex_api.egg-info/requires.txt 2022-05-18T09:19:45,057 writing top-level names to /tmp/pip-pip-egg-info-kmwftgib/py_cortex_api.egg-info/top_level.txt 2022-05-18T09:19:45,060 writing manifest file '/tmp/pip-pip-egg-info-kmwftgib/py_cortex_api.egg-info/SOURCES.txt' 2022-05-18T09:19:45,163 reading manifest file '/tmp/pip-pip-egg-info-kmwftgib/py_cortex_api.egg-info/SOURCES.txt' 2022-05-18T09:19:45,166 reading manifest template 'MANIFEST.in' 2022-05-18T09:19:45,170 warning: no files found matching 'cortex/ext/cortex/bin/cortex_var_31_c1' 2022-05-18T09:19:45,171 warning: no files found matching 'cortex/ext/cortex/bin/cortex_var_31_c2' 2022-05-18T09:19:45,172 warning: no previously-included files matching '*~' found anywhere in distribution 2022-05-18T09:19:45,173 warning: no previously-included files matching '*.swp' found anywhere in distribution 2022-05-18T09:19:45,173 adding license file 'LICENSE' 2022-05-18T09:19:45,178 writing manifest file '/tmp/pip-pip-egg-info-kmwftgib/py_cortex_api.egg-info/SOURCES.txt' 2022-05-18T09:19:45,403 Preparing metadata (setup.py): finished with status 'done' 2022-05-18T09:19:45,413 Source in /tmp/pip-wheel-06lfhv59/py-cortex-api_5e510b5a899743e7b39894efccaa60c8 has version 2.2.1, which satisfies requirement py-cortex-api==2.2.1 from https://files.pythonhosted.org/packages/85/e6/39478462ebcc183ec04acf85dfda6ef3a6cc3b8dd783b50432014170844f/py-cortex-api-2.2.1.tar.gz#sha256=fe239347e1b3c4734c8d328bc0cc810ecc8323d6157c3a56f5e276e262d467f5 2022-05-18T09:19:45,415 Removed py-cortex-api==2.2.1 from https://files.pythonhosted.org/packages/85/e6/39478462ebcc183ec04acf85dfda6ef3a6cc3b8dd783b50432014170844f/py-cortex-api-2.2.1.tar.gz#sha256=fe239347e1b3c4734c8d328bc0cc810ecc8323d6157c3a56f5e276e262d467f5 from build tracker '/tmp/pip-build-tracker-cue6qen6' 2022-05-18T09:19:45,424 Created temporary directory: /tmp/pip-unpack-okkeykul 2022-05-18T09:19:45,425 Building wheels for collected packages: py-cortex-api 2022-05-18T09:19:45,434 Created temporary directory: /tmp/pip-wheel-ddw2_om_ 2022-05-18T09:19:45,435 Building wheel for py-cortex-api (setup.py): started 2022-05-18T09:19:45,437 Destination directory: /tmp/pip-wheel-ddw2_om_ 2022-05-18T09:19:45,438 Running command python setup.py bdist_wheel 2022-05-18T09:19:51,813 running bdist_wheel 2022-05-18T09:19:53,024 running build 2022-05-18T09:19:53,024 running build_py 2022-05-18T09:19:53,025 START: Building backend dependencies 2022-05-18T09:19:53,384 Cloning into 'minimap2'... 2022-05-18T09:19:53,385 fatal: transport 'https' not allowed 2022-05-18T09:19:53,385 ./cortex/ext/install_dependencies.sh: line 16: cd: minimap2_dir: No such file or directory 2022-05-18T09:19:53,386 make: *** No targets specified and no makefile found. Stop. 2022-05-18T09:19:53,386 ERROR: backend compilation failed 2 2022-05-18T09:19:53,665 ERROR: [present-rich] python setup.py bdist_wheel exited with 255 2022-05-18T09:19:53,705 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2022-05-18T09:19:53,705 exec(compile('"'"''"'"''"'"' 2022-05-18T09:19:53,705 # This is -- a caller that pip uses to run setup.py 2022-05-18T09:19:53,705 # 2022-05-18T09:19:53,705 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-05-18T09:19:53,705 # import from `distutils.core` to work with newer packaging standards. 2022-05-18T09:19:53,705 # - It provides a clear error message when setuptools is not installed. 2022-05-18T09:19:53,705 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-05-18T09:19:53,705 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-05-18T09:19:53,705 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-05-18T09:19:53,705 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-05-18T09:19:53,705 import os, sys, tokenize 2022-05-18T09:19:53,705 2022-05-18T09:19:53,705 try: 2022-05-18T09:19:53,705 import setuptools 2022-05-18T09:19:53,705 except ImportError as error: 2022-05-18T09:19:53,705 print( 2022-05-18T09:19:53,705 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-05-18T09:19:53,705 "the build environment.", 2022-05-18T09:19:53,705 file=sys.stderr, 2022-05-18T09:19:53,705 ) 2022-05-18T09:19:53,705 sys.exit(1) 2022-05-18T09:19:53,705 2022-05-18T09:19:53,705 __file__ = %r 2022-05-18T09:19:53,705 sys.argv[0] = __file__ 2022-05-18T09:19:53,705 2022-05-18T09:19:53,705 if os.path.exists(__file__): 2022-05-18T09:19:53,705 filename = __file__ 2022-05-18T09:19:53,705 with tokenize.open(__file__) as f: 2022-05-18T09:19:53,705 setup_py_code = f.read() 2022-05-18T09:19:53,705 else: 2022-05-18T09:19:53,705 filename = "" 2022-05-18T09:19:53,705 setup_py_code = "from setuptools import setup; setup()" 2022-05-18T09:19:53,705 2022-05-18T09:19:53,705 exec(compile(setup_py_code, filename, "exec")) 2022-05-18T09:19:53,705 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-06lfhv59/py-cortex-api_5e510b5a899743e7b39894efccaa60c8/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-ddw2_om_[/] 2022-05-18T09:19:53,705 [bold magenta]cwd[/]: /tmp/pip-wheel-06lfhv59/py-cortex-api_5e510b5a899743e7b39894efccaa60c8/ 2022-05-18T09:19:53,706 Building wheel for py-cortex-api (setup.py): finished with status 'error' 2022-05-18T09:19:53,708 ERROR: Failed building wheel for py-cortex-api 2022-05-18T09:19:53,710 Running setup.py clean for py-cortex-api 2022-05-18T09:19:53,712 Running command python setup.py clean 2022-05-18T09:19:59,955 running clean 2022-05-18T09:20:00,042 'build/lib' does not exist -- can't clean it 2022-05-18T09:20:00,043 'build/bdist.linux-armv7l' does not exist -- can't clean it 2022-05-18T09:20:00,043 'build/scripts-3.9' does not exist -- can't clean it 2022-05-18T09:20:00,263 Failed to build py-cortex-api 2022-05-18T09:20:00,266 ERROR: Failed to build one or more wheels 2022-05-18T09:20:00,270 Exception information: 2022-05-18T09:20:00,270 Traceback (most recent call last): 2022-05-18T09:20:00,270 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper 2022-05-18T09:20:00,270 status = run_func(*args) 2022-05-18T09:20:00,270 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2022-05-18T09:20:00,270 return func(self, options, args) 2022-05-18T09:20:00,270 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 175, in run 2022-05-18T09:20:00,270 raise CommandError("Failed to build one or more wheels") 2022-05-18T09:20:00,270 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-05-18T09:20:00,277 Removed build tracker: '/tmp/pip-build-tracker-cue6qen6'