2022-05-19T06:00:08,079 Created temporary directory: /tmp/pip-ephem-wheel-cache-myku4xh4
2022-05-19T06:00:08,084 Created temporary directory: /tmp/pip-build-tracker-oxpajp5k
2022-05-19T06:00:08,085 Initialized build tracking at /tmp/pip-build-tracker-oxpajp5k
2022-05-19T06:00:08,086 Created build tracker: /tmp/pip-build-tracker-oxpajp5k
2022-05-19T06:00:08,086 Entered build tracker: /tmp/pip-build-tracker-oxpajp5k
2022-05-19T06:00:08,087 Created temporary directory: /tmp/pip-wheel-5tw8masg
2022-05-19T06:00:08,156 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-05-19T06:00:08,164 2 location(s) to search for versions of pyslow5:
2022-05-19T06:00:08,164 * https://pypi.org/simple/pyslow5/
2022-05-19T06:00:08,164 * https://www.piwheels.org/simple/pyslow5/
2022-05-19T06:00:08,165 Fetching project page and analyzing links: https://pypi.org/simple/pyslow5/
2022-05-19T06:00:08,166 Getting page https://pypi.org/simple/pyslow5/
2022-05-19T06:00:08,170 Found index url https://pypi.org/simple
2022-05-19T06:00:08,282   Found link https://files.pythonhosted.org/packages/23/0d/38c8cfedd09e7f753347b6ecd717a101c7236daf2ecccb34d44cedc6f125/pyslow5-0.2.0a1.tar.gz#sha256=a72b744ec652ba25eee5060748f8df8a5dc49eee126f48b7682f8d11d6cb434b (from https://pypi.org/simple/pyslow5/), version: 0.2.0a1
2022-05-19T06:00:08,284   Found link https://files.pythonhosted.org/packages/41/8b/eed2c94d79c0af2a69cddfcbc774697dbac35e0a053f7bfd452a629aca4a/pyslow5-0.3.0a1.tar.gz#sha256=5b9a25b33d15d6fba531f82deec6244699baedc2dee29dcd848cecc1555e4e60 (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0a1
2022-05-19T06:00:08,286   Found link https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz#sha256=6f902d9ca38c290253a008a96ff023dcdfcd8d7348b7bde8a0d4ee85eed5ba2b (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0
2022-05-19T06:00:08,287   Found link https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz#sha256=078e6964af086dc8d2dcdd458a5b3db9cdc27c026c66d37af2e3fda01e9a566e (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.4.0
2022-05-19T06:00:08,288   Found link https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz#sha256=0cda66777d7f8800f11730b03f3bee89be38b05c01c9fd85f57e6d001f7f50e9 (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a1
2022-05-19T06:00:08,290   Found link https://files.pythonhosted.org/packages/f2/8e/cc65540c51e93847d6d6302b2fff701ee10e464898844414449e05a4d333/pyslow5-0.5.0a2.tar.gz#sha256=ec3cd104573b7ccb1e7bbc72523d63cbce3a97c2e89eeecf10e3de52e3f8d628 (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a2
2022-05-19T06:00:08,291 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyslow5/
2022-05-19T06:00:08,291 Getting page https://www.piwheels.org/simple/pyslow5/
2022-05-19T06:00:08,293 Found index url https://www.piwheels.org/simple
2022-05-19T06:00:08,997   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a2-cp37-cp37m-linux_armv7l.whl#sha256=8cacacc7332627c1a6106be4cc8f2cfad3c745bb56847532adb6ad070705ba93 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:08,998   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a2-cp37-cp37m-linux_armv6l.whl#sha256=8cacacc7332627c1a6106be4cc8f2cfad3c745bb56847532adb6ad070705ba93 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:08,999   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a2-cp35-cp35m-linux_armv7l.whl#sha256=4d6b0b53381ea70ade03c68d4eb2f224ebc8b0122fc9231aad07df2f7e700352 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:08,999   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a2-cp35-cp35m-linux_armv6l.whl#sha256=4d6b0b53381ea70ade03c68d4eb2f224ebc8b0122fc9231aad07df2f7e700352 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,000   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp39-cp39-linux_armv7l.whl#sha256=f60dd1a7610ded2f7dbb4dbd590d3f59fdde5eb7327b913d5feccc0adb0ffdde (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,000   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp39-cp39-linux_armv6l.whl#sha256=f60dd1a7610ded2f7dbb4dbd590d3f59fdde5eb7327b913d5feccc0adb0ffdde (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,001   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp37-cp37m-linux_armv7l.whl#sha256=f054a0e073baa90d831b700f5e5e42fd45011e3ae0a4684dcfba0b1f8e86aa20 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,001   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp37-cp37m-linux_armv6l.whl#sha256=f054a0e073baa90d831b700f5e5e42fd45011e3ae0a4684dcfba0b1f8e86aa20 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,002   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp35-cp35m-linux_armv7l.whl#sha256=251dfce53fc1b5e78ebdb8c06be03afb57eb1353e4ef19211830c7f04709ea2f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,002   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.5.0a1-cp35-cp35m-linux_armv6l.whl#sha256=251dfce53fc1b5e78ebdb8c06be03afb57eb1353e4ef19211830c7f04709ea2f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,003   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp39-cp39-linux_armv7l.whl#sha256=5bf10bb2b3000cd24a1786f11a7de66dbb4636590f5e29ec5aca21a84fa4d02a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,003   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp39-cp39-linux_armv6l.whl#sha256=5bf10bb2b3000cd24a1786f11a7de66dbb4636590f5e29ec5aca21a84fa4d02a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,004   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp37-cp37m-linux_armv7l.whl#sha256=9d380221488f9191de4d12d2478ff8ec8826840a26958778c7ccf312fba5beca (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,004   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp37-cp37m-linux_armv6l.whl#sha256=9d380221488f9191de4d12d2478ff8ec8826840a26958778c7ccf312fba5beca (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,005   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp35-cp35m-linux_armv7l.whl#sha256=a6ef398f53044a2e346bc30d9f507aaf79303d8153daac586149dc681fbf322c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,005   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.4.0-cp35-cp35m-linux_armv6l.whl#sha256=a6ef398f53044a2e346bc30d9f507aaf79303d8153daac586149dc681fbf322c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,006   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp39-cp39-linux_armv7l.whl#sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,006   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp39-cp39-linux_armv6l.whl#sha256=b701f6753a8e33639159a38a9ed09212abf70cb80b413fff7245fc904d17a8de (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,007   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv7l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,007   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp37-cp37m-linux_armv6l.whl#sha256=0fc9a145e085fb51abea1d14962378dd6746af7d623b3c773a21236b69a07f7d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,008   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv7l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,008   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0-cp35-cp35m-linux_armv6l.whl#sha256=89f8c303a4b46e5d4d93a60ce5231face90b841baa1e27b4b8fc2f2d73d36d2d (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,009   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv7l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,009   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp39-cp39-linux_armv6l.whl#sha256=c237e6b28164ceb880925c3306fad541230757b454e99331d9e703e174f93044 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,010   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv7l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,010   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp37-cp37m-linux_armv6l.whl#sha256=f3b339ad5eb12b3614fd8cbfa976565490be6471edb885f1518c44748f7f6e7c (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,011   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv7l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,011   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.3.0a1-cp35-cp35m-linux_armv6l.whl#sha256=4125554be93c113129cf73a27c1b57f46b186115dc541cf7bb02b3161800ff06 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,012   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,012   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=cde6479a69345d4c2bef55beeb0ab67909d74e8f91a2ec5ef1a0f390aaa3c0dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,013   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,013   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=1e44f77d160ed7f970085e6bbd34c072504cd012441dfab74f56f9115217f60a (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,014   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,014   Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3)
2022-05-19T06:00:09,015 Skipping link: not a file: https://www.piwheels.org/simple/pyslow5/
2022-05-19T06:00:09,015 Skipping link: not a file: https://pypi.org/simple/pyslow5/
2022-05-19T06:00:09,063 Given no hashes to check 1 links for project 'pyslow5': discarding no candidates
2022-05-19T06:00:09,106 Collecting pyslow5==0.5.0a2
2022-05-19T06:00:09,117   Created temporary directory: /tmp/pip-unpack-wtzfjhgd
2022-05-19T06:00:09,393   Downloading pyslow5-0.5.0a2.tar.gz (361 kB)
2022-05-19T06:00:10,121   Added pyslow5==0.5.0a2 from https://files.pythonhosted.org/packages/f2/8e/cc65540c51e93847d6d6302b2fff701ee10e464898844414449e05a4d333/pyslow5-0.5.0a2.tar.gz#sha256=ec3cd104573b7ccb1e7bbc72523d63cbce3a97c2e89eeecf10e3de52e3f8d628 to build tracker '/tmp/pip-build-tracker-oxpajp5k'
2022-05-19T06:00:10,124   Running setup.py (path:/tmp/pip-wheel-5tw8masg/pyslow5_ad528c1385794fdea3402e641275d59e/setup.py) egg_info for package pyslow5
2022-05-19T06:00:10,125   Created temporary directory: /tmp/pip-pip-egg-info-x_eyl6xc
2022-05-19T06:00:10,126   Preparing metadata (setup.py): started
2022-05-19T06:00:10,128   Running command python setup.py egg_info
2022-05-19T06:00:17,006   running egg_info
2022-05-19T06:00:17,011   creating /tmp/pip-pip-egg-info-x_eyl6xc/pyslow5.egg-info
2022-05-19T06:00:17,616   writing /tmp/pip-pip-egg-info-x_eyl6xc/pyslow5.egg-info/PKG-INFO
2022-05-19T06:00:18,173   writing dependency_links to /tmp/pip-pip-egg-info-x_eyl6xc/pyslow5.egg-info/dependency_links.txt
2022-05-19T06:00:20,948   writing requirements to /tmp/pip-pip-egg-info-x_eyl6xc/pyslow5.egg-info/requires.txt
2022-05-19T06:00:21,507   writing top-level names to /tmp/pip-pip-egg-info-x_eyl6xc/pyslow5.egg-info/top_level.txt
2022-05-19T06:00:21,510   writing manifest file '/tmp/pip-pip-egg-info-x_eyl6xc/pyslow5.egg-info/SOURCES.txt'
2022-05-19T06:00:21,612   reading manifest file '/tmp/pip-pip-egg-info-x_eyl6xc/pyslow5.egg-info/SOURCES.txt'
2022-05-19T06:00:21,615   reading manifest template 'MANIFEST.in'
2022-05-19T06:00:21,644   adding license file 'LICENSE'
2022-05-19T06:00:21,654   writing manifest file '/tmp/pip-pip-egg-info-x_eyl6xc/pyslow5.egg-info/SOURCES.txt'
2022-05-19T06:00:21,922   Preparing metadata (setup.py): finished with status 'done'
2022-05-19T06:00:21,936   Source in /tmp/pip-wheel-5tw8masg/pyslow5_ad528c1385794fdea3402e641275d59e has version 0.5.0a2, which satisfies requirement pyslow5==0.5.0a2 from https://files.pythonhosted.org/packages/f2/8e/cc65540c51e93847d6d6302b2fff701ee10e464898844414449e05a4d333/pyslow5-0.5.0a2.tar.gz#sha256=ec3cd104573b7ccb1e7bbc72523d63cbce3a97c2e89eeecf10e3de52e3f8d628
2022-05-19T06:00:21,938   Removed pyslow5==0.5.0a2 from https://files.pythonhosted.org/packages/f2/8e/cc65540c51e93847d6d6302b2fff701ee10e464898844414449e05a4d333/pyslow5-0.5.0a2.tar.gz#sha256=ec3cd104573b7ccb1e7bbc72523d63cbce3a97c2e89eeecf10e3de52e3f8d628 from build tracker '/tmp/pip-build-tracker-oxpajp5k'
2022-05-19T06:00:21,954 Created temporary directory: /tmp/pip-unpack-561kh1kj
2022-05-19T06:00:21,955 Building wheels for collected packages: pyslow5
2022-05-19T06:00:21,964   Created temporary directory: /tmp/pip-wheel-kn4p5ngx
2022-05-19T06:00:21,965   Building wheel for pyslow5 (setup.py): started
2022-05-19T06:00:21,967   Destination directory: /tmp/pip-wheel-kn4p5ngx
2022-05-19T06:00:21,967   Running command python setup.py bdist_wheel
2022-05-19T06:00:28,354   running bdist_wheel
2022-05-19T06:00:28,494   running build
2022-05-19T06:00:28,495   running build_ext
2022-05-19T06:00:28,587   cythoning python/pyslow5.pyx to python/pyslow5.c
2022-05-19T06:00:41,444   building 'pyslow5' extension
2022-05-19T06:00:41,446   creating build
2022-05-19T06:00:41,460   creating build/temp.linux-armv7l-cpython-39
2022-05-19T06:00:41,462   creating build/temp.linux-armv7l-cpython-39/python
2022-05-19T06:00:41,464   creating build/temp.linux-armv7l-cpython-39/src
2022-05-19T06:00:41,466   creating build/temp.linux-armv7l-cpython-39/thirdparty
2022-05-19T06:00:41,467   creating build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte
2022-05-19T06:00:41,469   creating build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src
2022-05-19T06:00:41,472   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/pyslow5.c -o build/temp.linux-armv7l-cpython-39/python/pyslow5.o -g -Wall -O2 -std=c99
2022-05-19T06:00:42,923   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2022-05-19T06:00:42,924                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-05-19T06:00:42,925                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-05-19T06:00:42,925                    from python/pyslow5.c:703:
2022-05-19T06:00:42,925   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-05-19T06:00:42,926      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-05-19T06:00:42,926         |  ^~~~~~~
2022-05-19T06:01:53,714   python/pyslow5.c: In function ‘__pyx_pw_7pyslow5_4Open_61write_record’:
2022-05-19T06:01:53,952   python/pyslow5.c:36438:38: warning: ‘__pyx_v_ret’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-05-19T06:01:53,952   36438 |       __pyx_t_8 = ((__pyx_v_ret < 0) != 0);
2022-05-19T06:01:53,953         |                   ~~~~~~~~~~~~~~~~~~~^~~~~
2022-05-19T06:01:53,953   python/pyslow5.c:34315:8: note: ‘__pyx_v_ret’ was declared here
2022-05-19T06:01:53,953   34315 |   long __pyx_v_ret;
2022-05-19T06:01:53,954         |        ^~~~~~~~~~~
2022-05-19T06:02:12,436   python/pyslow5.c: In function ‘__pyx_pw_7pyslow5_4Open_63write_record_batch’:
2022-05-19T06:02:12,491   python/pyslow5.c:40290:42: warning: ‘__pyx_v_ret’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-05-19T06:02:12,491   40290 |           __pyx_t_4 = ((__pyx_v_ret < 0) != 0);
2022-05-19T06:02:12,492         |                       ~~~~~~~~~~~~~~~~~~~^~~~~
2022-05-19T06:02:12,549   python/pyslow5.c:36981:8: note: ‘__pyx_v_ret’ was declared here
2022-05-19T06:02:12,550   36981 |   long __pyx_v_ret;
2022-05-19T06:02:12,550         |        ^~~~~~~~~~~
2022-05-19T06:03:16,950   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/slow5_write.c -o build/temp.linux-armv7l-cpython-39/python/slow5_write.o -g -Wall -O2 -std=c99
2022-05-19T06:03:18,109   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/slow5threads.c -o build/temp.linux-armv7l-cpython-39/python/slow5threads.o -g -Wall -O2 -std=c99
2022-05-19T06:03:19,577   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5.c -o build/temp.linux-armv7l-cpython-39/src/slow5.o -g -Wall -O2 -std=c99
2022-05-19T06:03:20,048   src/slow5.c: In function ‘slow5_init’:
2022-05-19T06:03:20,053   src/slow5.c:188:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2022-05-19T06:03:20,054     188 |     if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
2022-05-19T06:03:20,054         |                                                   ^~
2022-05-19T06:03:20,168   src/slow5.c: In function ‘slow5_get_mem’:
2022-05-19T06:03:20,171   src/slow5.c:2186:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-19T06:03:20,171    2186 |     if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) {
2022-05-19T06:03:20,172         |                                                 ^~
2022-05-19T06:03:20,175   In file included from include/slow5/slow5.h:55,
2022-05-19T06:03:20,175                    from src/slow5.c:40:
2022-05-19T06:03:20,176   include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=]
2022-05-19T06:03:20,176      80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m "
2022-05-19T06:03:20,176         |                            ^~~~~~~~~~~~~~~~~~~~~~~~
2022-05-19T06:03:20,177   include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’
2022-05-19T06:03:20,177     117 |         fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \
2022-05-19T06:03:20,177         |                         ^~~~~~~~~~~~~~~~~~
2022-05-19T06:03:20,177   src/slow5.c:2187:9: note: in expansion of macro ‘SLOW5_ERROR’
2022-05-19T06:03:20,178    2187 |         SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.",
2022-05-19T06:03:20,178         |         ^~~~~~~~~~~
2022-05-19T06:03:20,214   src/slow5.c: In function ‘slow5_rec_aux_parse’:
2022-05-19T06:03:20,217   include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2022-05-19T06:03:20,218      80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m "
2022-05-19T06:03:20,218         |                            ^~~~~~~~~~~~~~~~~~~~~~~~
2022-05-19T06:03:20,218   include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’
2022-05-19T06:03:20,219     117 |         fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \
2022-05-19T06:03:20,219         |                         ^~~~~~~~~~~~~~~~~~
2022-05-19T06:03:20,220   src/slow5.c:2806:17: note: in expansion of macro ‘SLOW5_ERROR’
2022-05-19T06:03:20,220    2806 |                 SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size);
2022-05-19T06:03:20,220         |                 ^~~~~~~~~~~
2022-05-19T06:03:41,554   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_idx.c -o build/temp.linux-armv7l-cpython-39/src/slow5_idx.o -g -Wall -O2 -std=c99
2022-05-19T06:03:43,899   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_misc.c -o build/temp.linux-armv7l-cpython-39/src/slow5_misc.o -g -Wall -O2 -std=c99
2022-05-19T06:03:45,019   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_press.c -o build/temp.linux-armv7l-cpython-39/src/slow5_press.o -g -Wall -O2 -std=c99
2022-05-19T06:03:45,439   src/slow5_press.c: In function ‘slow5_fwrite_compress’:
2022-05-19T06:03:45,441   src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-19T06:03:45,441     558 |                 if (bytes != size * nmemb || ferror(fp)) {
2022-05-19T06:03:45,442         |                           ^~
2022-05-19T06:03:45,442   src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-19T06:03:45,442     559 |                     if (bytes != size * nmemb) {
2022-05-19T06:03:45,443         |                               ^~
2022-05-19T06:03:45,447   src/slow5_press.c: In function ‘slow5_pread_depress_solo’:
2022-05-19T06:03:45,447   src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-19T06:03:45,448     686 |     if ((ret = pread(fd, raw, count, offset)) != count) {
2022-05-19T06:03:45,448         |                                               ^~
2022-05-19T06:03:47,699   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_decode.c -o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_decode.o -g -Wall -O2 -std=c99
2022-05-19T06:03:47,913   In file included from thirdparty/streamvbyte/src/streamvbyte_decode.c:25:
2022-05-19T06:03:47,913   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h:22:16: warning: ‘shuffleTable’ defined but not used [-Wunused-variable]
2022-05-19T06:03:47,913      22 | static uint8_t shuffleTable[256][16] = {
2022-05-19T06:03:47,914         |                ^~~~~~~~~~~~
2022-05-19T06:03:47,914   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h:2:16: warning: ‘lengthTable’ defined but not used [-Wunused-variable]
2022-05-19T06:03:47,915       2 | static uint8_t lengthTable[256] ={
2022-05-19T06:03:47,915         |                ^~~~~~~~~~~
2022-05-19T06:03:48,103   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_encode.c -o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_encode.o -g -Wall -O2 -std=c99
2022-05-19T06:03:48,295   In file included from thirdparty/streamvbyte/src/streamvbyte_encode.c:25:
2022-05-19T06:03:48,295   thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_encode.h:93:16: warning: ‘encodingShuffleTable’ defined but not used [-Wunused-variable]
2022-05-19T06:03:48,296      93 | static uint8_t encodingShuffleTable[256][16] = {
2022-05-19T06:03:48,296         |                ^~~~~~~~~~~~~~~~~~~~
2022-05-19T06:03:48,486   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_zigzag.c -o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -g -Wall -O2 -std=c99
2022-05-19T06:03:48,852   creating build/lib.linux-armv7l-cpython-39
2022-05-19T06:03:48,854   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/python/pyslow5.o build/temp.linux-armv7l-cpython-39/python/slow5_write.o build/temp.linux-armv7l-cpython-39/python/slow5threads.o build/temp.linux-armv7l-cpython-39/src/slow5.o build/temp.linux-armv7l-cpython-39/src/slow5_idx.o build/temp.linux-armv7l-cpython-39/src/slow5_misc.o build/temp.linux-armv7l-cpython-39/src/slow5_press.o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_decode.o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_encode.o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -L. -L/usr/lib -lm -lz -o build/lib.linux-armv7l-cpython-39/pyslow5.cpython-39-arm-linux-gnueabihf.so
2022-05-19T06:03:50,297   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-05-19T06:03:50,298     warnings.warn(
2022-05-19T06:03:50,906   installing to build/bdist.linux-armv7l/wheel
2022-05-19T06:03:50,907   running install
2022-05-19T06:03:50,968   running install_lib
2022-05-19T06:03:51,852   creating build/bdist.linux-armv7l
2022-05-19T06:03:51,853   creating build/bdist.linux-armv7l/wheel
2022-05-19T06:03:51,855   copying build/lib.linux-armv7l-cpython-39/pyslow5.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2022-05-19T06:03:52,039   running install_egg_info
2022-05-19T06:03:53,289   running egg_info
2022-05-19T06:03:53,895   writing pyslow5.egg-info/PKG-INFO
2022-05-19T06:03:54,482   writing dependency_links to pyslow5.egg-info/dependency_links.txt
2022-05-19T06:03:57,290   writing requirements to pyslow5.egg-info/requires.txt
2022-05-19T06:03:57,852   writing top-level names to pyslow5.egg-info/top_level.txt
2022-05-19T06:03:57,905   reading manifest file 'pyslow5.egg-info/SOURCES.txt'
2022-05-19T06:03:57,932   reading manifest template 'MANIFEST.in'
2022-05-19T06:03:57,952   adding license file 'LICENSE'
2022-05-19T06:03:57,964   writing manifest file 'pyslow5.egg-info/SOURCES.txt'
2022-05-19T06:03:57,967   Copying pyslow5.egg-info to build/bdist.linux-armv7l/wheel/pyslow5-0.5.0a2-py3.9.egg-info
2022-05-19T06:03:57,989   running install_scripts
2022-05-19T06:03:58,069   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-05-19T06:03:58,077   creating build/bdist.linux-armv7l/wheel/pyslow5-0.5.0a2.dist-info/WHEEL
2022-05-19T06:03:58,082   creating '/tmp/pip-wheel-kn4p5ngx/pyslow5-0.5.0a2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-05-19T06:03:59,890   adding 'pyslow5.cpython-39-arm-linux-gnueabihf.so'
2022-05-19T06:03:59,968   adding 'pyslow5-0.5.0a2.dist-info/LICENSE'
2022-05-19T06:03:59,973   adding 'pyslow5-0.5.0a2.dist-info/METADATA'
2022-05-19T06:03:59,975   adding 'pyslow5-0.5.0a2.dist-info/WHEEL'
2022-05-19T06:03:59,976   adding 'pyslow5-0.5.0a2.dist-info/top_level.txt'
2022-05-19T06:03:59,977   adding 'pyslow5-0.5.0a2.dist-info/RECORD'
2022-05-19T06:04:00,026   removing build/bdist.linux-armv7l/wheel
2022-05-19T06:04:00,541   Building wheel for pyslow5 (setup.py): finished with status 'done'
2022-05-19T06:04:00,590   Created wheel for pyslow5: filename=pyslow5-0.5.0a2-cp39-cp39-linux_armv7l.whl size=1352834 sha256=6dcccc50f0f78a65ec10549f35e50c3ece670be5287f9f0d0553c491ac162356
2022-05-19T06:04:00,592   Stored in directory: /tmp/pip-ephem-wheel-cache-myku4xh4/wheels/45/c7/4b/f96a81b6a0522edbe93b16edf8a49f39f80760ce31ac55b17a
2022-05-19T06:04:00,620 Successfully built pyslow5
2022-05-19T06:04:00,724 Removed build tracker: '/tmp/pip-build-tracker-oxpajp5k'