2022-05-20T11:24:22,964 Created temporary directory: /tmp/pip-ephem-wheel-cache-x2v511cj
2022-05-20T11:24:22,970 Created temporary directory: /tmp/pip-build-tracker-zy9dwbrc
2022-05-20T11:24:22,971 Initialized build tracking at /tmp/pip-build-tracker-zy9dwbrc
2022-05-20T11:24:22,971 Created build tracker: /tmp/pip-build-tracker-zy9dwbrc
2022-05-20T11:24:22,971 Entered build tracker: /tmp/pip-build-tracker-zy9dwbrc
2022-05-20T11:24:22,972 Created temporary directory: /tmp/pip-wheel-oejve0jm
2022-05-20T11:24:23,042 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-05-20T11:24:23,050 2 location(s) to search for versions of viennarna:
2022-05-20T11:24:23,050 * https://pypi.org/simple/viennarna/
2022-05-20T11:24:23,050 * https://www.piwheels.org/simple/viennarna/
2022-05-20T11:24:23,052 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/
2022-05-20T11:24:23,053 Getting page https://pypi.org/simple/viennarna/
2022-05-20T11:24:23,056 Found index url https://pypi.org/simple
2022-05-20T11:24:23,166   Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz#sha256=8a1eb6ea38a4bcc69129be4a66a548982babb7ffddcf28adeafebcf0a765e080 (from https://pypi.org/simple/viennarna/), version: 2.5.0a5
2022-05-20T11:24:23,167 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/
2022-05-20T11:24:23,168 Getting page https://www.piwheels.org/simple/viennarna/
2022-05-20T11:24:23,170 Found index url https://www.piwheels.org/simple
2022-05-20T11:24:23,422 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/
2022-05-20T11:24:23,423 Skipping link: not a file: https://pypi.org/simple/viennarna/
2022-05-20T11:24:23,464 Given no hashes to check 1 links for project 'viennarna': discarding no candidates
2022-05-20T11:24:23,502 Collecting viennarna==2.5.0a5
2022-05-20T11:24:23,506   Created temporary directory: /tmp/pip-unpack-sqnqk_sb
2022-05-20T11:24:23,601   Downloading ViennaRNA-2.5.0a5.tar.gz (58.0 MB)
2022-05-20T11:25:34,678   Added viennarna==2.5.0a5 from https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz#sha256=8a1eb6ea38a4bcc69129be4a66a548982babb7ffddcf28adeafebcf0a765e080 to build tracker '/tmp/pip-build-tracker-zy9dwbrc'
2022-05-20T11:25:34,684   Running setup.py (path:/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/setup.py) egg_info for package viennarna
2022-05-20T11:25:34,685   Created temporary directory: /tmp/pip-pip-egg-info-0jspob2w
2022-05-20T11:25:34,686   Preparing metadata (setup.py): started
2022-05-20T11:25:34,688   Running command python setup.py egg_info
2022-05-20T11:25:40,443   running egg_info
2022-05-20T11:25:40,449   creating /tmp/pip-pip-egg-info-0jspob2w/ViennaRNA.egg-info
2022-05-20T11:25:41,058   writing /tmp/pip-pip-egg-info-0jspob2w/ViennaRNA.egg-info/PKG-INFO
2022-05-20T11:25:41,626   writing dependency_links to /tmp/pip-pip-egg-info-0jspob2w/ViennaRNA.egg-info/dependency_links.txt
2022-05-20T11:25:45,006   writing top-level names to /tmp/pip-pip-egg-info-0jspob2w/ViennaRNA.egg-info/top_level.txt
2022-05-20T11:25:45,010   writing manifest file '/tmp/pip-pip-egg-info-0jspob2w/ViennaRNA.egg-info/SOURCES.txt'
2022-05-20T11:25:45,733   reading manifest file '/tmp/pip-pip-egg-info-0jspob2w/ViennaRNA.egg-info/SOURCES.txt'
2022-05-20T11:25:45,735   reading manifest template 'MANIFEST.in'
2022-05-20T11:25:47,629   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-05-20T11:25:47,630   adding license file 'LICENSE'
2022-05-20T11:25:48,461   writing manifest file '/tmp/pip-pip-egg-info-0jspob2w/ViennaRNA.egg-info/SOURCES.txt'
2022-05-20T11:25:48,703   Preparing metadata (setup.py): finished with status 'done'
2022-05-20T11:25:48,715   Source in /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe has version 2.5.0a5, which satisfies requirement viennarna==2.5.0a5 from https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz#sha256=8a1eb6ea38a4bcc69129be4a66a548982babb7ffddcf28adeafebcf0a765e080
2022-05-20T11:25:48,717   Removed viennarna==2.5.0a5 from https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz#sha256=8a1eb6ea38a4bcc69129be4a66a548982babb7ffddcf28adeafebcf0a765e080 from build tracker '/tmp/pip-build-tracker-zy9dwbrc'
2022-05-20T11:25:48,727 Created temporary directory: /tmp/pip-unpack-ctsw75jj
2022-05-20T11:25:48,728 Building wheels for collected packages: viennarna
2022-05-20T11:25:48,738   Created temporary directory: /tmp/pip-wheel-osp69r6g
2022-05-20T11:25:48,738   Building wheel for viennarna (setup.py): started
2022-05-20T11:25:48,740   Destination directory: /tmp/pip-wheel-osp69r6g
2022-05-20T11:25:48,741   Running command python setup.py bdist_wheel
2022-05-20T11:25:53,854   running bdist_wheel
2022-05-20T11:25:55,057   running build
2022-05-20T11:25:55,058   running build_py
2022-05-20T11:25:55,674   creating build
2022-05-20T11:25:55,674   creating build/lib
2022-05-20T11:25:55,676   creating build/lib/ViennaRNA
2022-05-20T11:25:55,678   copying ./ViennaRNA/__init__.py -> build/lib/ViennaRNA
2022-05-20T11:25:55,683   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-05-20T11:25:55,684     warnings.warn(
2022-05-20T11:25:56,295   installing to build/bdist.linux-armv7l/wheel
2022-05-20T11:25:56,296   running install
2022-05-20T11:25:57,781   checking for gcc... gcc
2022-05-20T11:25:58,464   checking whether the C compiler works... yes
2022-05-20T11:25:58,466   checking for C compiler default output file name... a.out
2022-05-20T11:25:58,851   checking for suffix of executables...
2022-05-20T11:25:59,288   checking whether we are cross compiling... no
2022-05-20T11:25:59,514   checking for suffix of object files... o
2022-05-20T11:25:59,710   checking whether the compiler supports GNU C... yes
2022-05-20T11:25:59,910   checking whether gcc accepts -g... yes
2022-05-20T11:26:00,289   checking for gcc option to enable C11 features... none needed
2022-05-20T11:26:00,648   checking whether gcc understands -c and -o together... yes
2022-05-20T11:26:00,874   checking for stdio.h... yes
2022-05-20T11:26:01,161   checking for stdlib.h... yes
2022-05-20T11:26:01,446   checking for string.h... yes
2022-05-20T11:26:01,741   checking for inttypes.h... yes
2022-05-20T11:26:02,034   checking for stdint.h... yes
2022-05-20T11:26:02,327   checking for strings.h... yes
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2022-05-20T11:26:02,931   checking for sys/types.h... yes
2022-05-20T11:26:03,256   checking for unistd.h... yes
2022-05-20T11:26:03,597   checking for wchar.h... yes
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2022-05-20T11:26:04,281   checking whether it is safe to define __EXTENSIONS__... yes
2022-05-20T11:26:04,522   checking whether _XOPEN_SOURCE should be defined... no
2022-05-20T11:26:04,565   checking whether make supports nested variables... yes
2022-05-20T11:26:04,660   checking for a BSD-compatible install... /usr/bin/install -c
2022-05-20T11:26:04,694   checking whether build environment is sane... yes
2022-05-20T11:26:04,782   checking for a race-free mkdir -p... /usr/bin/mkdir -p
2022-05-20T11:26:04,787   checking for gawk... gawk
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2022-05-20T11:26:05,604   checking if malloc debugging is wanted... no
2022-05-20T11:26:06,221   checking build system type... armv7l-unknown-linux-gnueabihf
2022-05-20T11:26:06,224   checking host system type... armv7l-unknown-linux-gnueabihf
2022-05-20T11:26:06,240   checking for g++... g++
2022-05-20T11:26:06,671   checking whether the compiler supports GNU C++... yes
2022-05-20T11:26:06,890   checking whether g++ accepts -g... yes
2022-05-20T11:26:07,549   checking for g++ option to enable C++11 features... none needed
2022-05-20T11:26:07,950   checking dependency style of g++... gcc3
2022-05-20T11:26:08,244   checking how to run the C++ preprocessor... g++ -E
2022-05-20T11:26:08,539   checking for gcc... (cached) gcc
2022-05-20T11:26:08,808   checking whether the compiler supports GNU C... (cached) yes
2022-05-20T11:26:08,811   checking whether gcc accepts -g... (cached) yes
2022-05-20T11:26:08,813   checking for gcc option to enable C11 features... (cached) none needed
2022-05-20T11:26:08,817   checking whether gcc understands -c and -o together... (cached) yes
2022-05-20T11:26:09,084   checking how to run the C preprocessor... gcc -E
2022-05-20T11:26:09,354   checking for ar... ar
2022-05-20T11:26:09,586   checking the archiver (ar) interface... ar
2022-05-20T11:26:09,614   checking whether make sets $(MAKE)... (cached) yes
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2022-05-20T11:26:09,871   checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
2022-05-20T11:26:10,118   checking the name lister (/usr/bin/nm -B) interface... BSD nm
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2022-05-20T11:26:10,194   checking how to convert armv7l-unknown-linux-gnueabihf file names to armv7l-unknown-linux-gnueabihf format... func_convert_file_noop
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2022-05-20T11:26:10,213   checking for dlltool... no
2022-05-20T11:26:10,215   checking how to associate runtime and link libraries... printf %s\n
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2022-05-20T11:26:11,255   checking command to parse /usr/bin/nm -B output from gcc object... ok
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2022-05-20T11:26:13,980   checking if gcc supports -c -o file.o... yes
2022-05-20T11:26:13,981   checking if gcc supports -c -o file.o... (cached) yes
2022-05-20T11:26:14,077   checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
2022-05-20T11:26:14,414   checking whether -lc should be explicitly linked in... no
2022-05-20T11:26:15,020   checking dynamic linker characteristics... GNU/Linux ld.so
2022-05-20T11:26:15,022   checking how to hardcode library paths into programs... immediate
2022-05-20T11:26:15,041   checking whether stripping libraries is possible... yes
2022-05-20T11:26:15,043   checking if libtool supports shared libraries... yes
2022-05-20T11:26:15,045   checking whether to build shared libraries... yes
2022-05-20T11:26:15,046   checking whether to build static libraries... yes
2022-05-20T11:26:15,086   checking how to run the C++ preprocessor... g++ -E
2022-05-20T11:26:16,164   checking for ld used by g++... /usr/bin/ld
2022-05-20T11:26:16,186   checking if the linker (/usr/bin/ld) is GNU ld... yes
2022-05-20T11:26:16,256   checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
2022-05-20T11:26:16,965   checking for g++ option to produce PIC... -fPIC -DPIC
2022-05-20T11:26:17,217   checking if g++ PIC flag -fPIC -DPIC works... yes
2022-05-20T11:26:18,005   checking if g++ static flag -static works... yes
2022-05-20T11:26:18,343   checking if g++ supports -c -o file.o... yes
2022-05-20T11:26:18,345   checking if g++ supports -c -o file.o... (cached) yes
2022-05-20T11:26:18,347   checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
2022-05-20T11:26:18,393   checking dynamic linker characteristics... (cached) GNU/Linux ld.so
2022-05-20T11:26:18,395   checking how to hardcode library paths into programs... immediate
2022-05-20T11:26:18,890   checking for exp in -lm... yes
2022-05-20T11:26:18,916   ./configure: line 19003: #include: command not found
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2022-05-20T11:26:33,867   checking whether C++ compiler accepts -fno-strict-aliasing... yes
2022-05-20T11:26:34,297   checking whether the linker accepts -fno-strict-aliasing... yes
2022-05-20T11:26:34,808   checking whether the C compiler allows unnamed unions of unnamed structs... yes
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2022-05-20T11:26:36,375   checking whether C++ compiler accepts -ffat-lto-objects... yes
2022-05-20T11:26:36,376   configure: WARNING: Trying to re-set ar/ranlib/nm to compiler specific wrappers
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2022-05-20T11:26:36,394   checking for gcc-nm... gcc-nm
2022-05-20T11:26:37,322   checking whether the linker supports Link time Optimization (LTO)... yes
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2022-05-20T11:26:38,049   configure: WARNING: "Can't find libgsl. Falling back to default implementation."
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2022-05-20T11:26:39,939   checking whether pthreads work with "-pthread" and "-lpthread"... yes
2022-05-20T11:26:40,424   checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
2022-05-20T11:26:40,425   checking whether more special flags are required for pthreads... no
2022-05-20T11:26:40,925   checking for PTHREAD_PRIO_INHERIT... yes
2022-05-20T11:26:41,082   checking compiler support for AVX 512 instructions... no
2022-05-20T11:26:41,219   checking compiler support for SSE 4.1 instructions... no
2022-05-20T11:26:41,442   checking whether C compiler accepts -ftree-vectorize... yes
2022-05-20T11:26:41,815   checking for mpfr.h... no
2022-05-20T11:26:41,817   configure: WARNING:
2022-05-20T11:26:41,817   ==========================
2022-05-20T11:26:41,818   Failed to find mpfr.h!

2022-05-20T11:26:41,818   You probably need to install the mpfr-devel package or similar
2022-05-20T11:26:41,819   ==========================

2022-05-20T11:26:41,901   checking for ./interfaces/Makefile.am... yes
2022-05-20T11:26:41,907   checking for swig... /usr/bin/swig
2022-05-20T11:26:41,941   checking SWIG version... 4.0.2
2022-05-20T11:26:42,236   checking for SWIG library... /usr/share/swig4.0
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2022-05-20T11:26:42,251   checking for python2... no
2022-05-20T11:26:42,254   checking for python2.7... no
2022-05-20T11:26:42,257   checking for python2.6... no
2022-05-20T11:26:42,260   checking for ./interfaces/Python/Makefile.am... yes
2022-05-20T11:26:42,267   checking for python3... /usr/bin/python3
2022-05-20T11:26:46,233   checking for Python3 include path... /usr/include/python3.9
2022-05-20T11:26:46,236   checking for /usr/include/python3.9/Python.h... yes
2022-05-20T11:26:46,237   checking for Python3 ldflags...
2022-05-20T11:26:48,206   checking for Python3 extension linker... arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions  -Wl,-z,relro -g -fwrapv -O2
2022-05-20T11:26:48,207   checking for directory to install Python3 scripts in... /usr/lib/python3.9/dist-packages
2022-05-20T11:26:48,209   checking for directory to install architecture dependent python3 things in... /usr/lib/python3.9/dist-packages
2022-05-20T11:26:50,158   checking for Python3 module extension... .cpython-39-arm-linux-gnueabihf.so
2022-05-20T11:26:50,275   checking for Python3 tag for cached compiled scripts... cpython-39
2022-05-20T11:26:50,484   checking for Python3 extension of cached and optimized bytecode... cpython-39.opt-1.pyc
2022-05-20T11:26:50,491   checking for doxygen... no
2022-05-20T11:26:50,495   checking for dot... no
2022-05-20T11:26:50,499   checking for egrep... /usr/bin/egrep
2022-05-20T11:26:50,503   checking for perl... /usr/bin/perl
2022-05-20T11:26:50,512   checking for htlatex... no
2022-05-20T11:26:50,562   checking for CHECK... no
2022-05-20T11:26:50,595   configure: WARNING: check not found -- will not build C-library Unit tests
2022-05-20T11:26:50,599   checking for diff... /usr/bin/diff
2022-05-20T11:26:50,607   checking for xxd... /usr/bin/xxd
2022-05-20T11:26:50,632   checking for gengetopt... no
2022-05-20T11:26:50,639   checking for help2man... no
2022-05-20T11:26:52,089   checking whether g++ supports C++11 features with -std=c++11... yes
2022-05-20T11:26:52,095   checking for ./src/dlib-19.22/dlib/all/source.cpp... yes
2022-05-20T11:26:52,462   checking that generated files are newer than configure... done
2022-05-20T11:26:52,469   configure: creating ./config.status
2022-05-20T11:26:59,423   config.status: creating packaging/macosx/Makefile
2022-05-20T11:26:59,595   config.status: creating packaging/macosx/Distribution.xml
2022-05-20T11:26:59,769   config.status: creating packaging/macosx/resources/welcome.txt
2022-05-20T11:26:59,943   config.status: creating interfaces/Python/Makefile
2022-05-20T11:27:00,118   config.status: creating interfaces/Python/version.i
2022-05-20T11:27:00,290   config.status: creating tests/Makefile
2022-05-20T11:27:00,477   config.status: creating tests/RNApath.py
2022-05-20T11:27:00,648   config.status: creating tests/RNAHelpers.pm
2022-05-20T11:27:00,820   config.status: creating tests/test-env.sh
2022-05-20T11:27:00,993   config.status: creating src/ViennaRNA/static/templates_postscript.h
2022-05-20T11:27:01,169   config.status: creating src/ViennaRNA/static/templates_svg.h
2022-05-20T11:27:01,344   config.status: creating src/ViennaRNA/static/energy_parameter_sets.h
2022-05-20T11:27:01,516   config.status: creating src/ViennaRNA/vrna_config.h
2022-05-20T11:27:01,687   config.status: creating misc/Makefile
2022-05-20T11:27:01,855   config.status: creating interfaces/Makefile
2022-05-20T11:27:02,025   config.status: creating Makefile
2022-05-20T11:27:02,158   config.status: creating RNAlib2.pc
2022-05-20T11:27:02,290   config.status: creating src/Utils/Makefile
2022-05-20T11:27:02,463   config.status: creating src/bin/Makefile
2022-05-20T11:27:02,646   config.status: creating src/Makefile
2022-05-20T11:27:02,817   config.status: creating src/ViennaRNA/Makefile
2022-05-20T11:27:03,039   config.status: creating src/ViennaRNA/static/Makefile
2022-05-20T11:27:03,208   config.status: creating man/Makefile
2022-05-20T11:27:03,381   config.status: creating doc/Makefile
2022-05-20T11:27:03,557   config.status: creating doc/CLA/Makefile
2022-05-20T11:27:03,730   config.status: creating RNA-Tutorial/Makefile
2022-05-20T11:27:03,914   config.status: creating man/cmdlopt.sh
2022-05-20T11:27:04,105   config.status: creating examples/Makefile
2022-05-20T11:27:04,275   config.status: creating packaging/viennarna.spec
2022-05-20T11:27:04,452   config.status: creating packaging/PKGBUILD
2022-05-20T11:27:04,633   config.status: creating packaging/win_installer_archlinux_i686.nsi
2022-05-20T11:27:04,814   config.status: creating packaging/win_installer_archlinux_x86_64.nsi
2022-05-20T11:27:04,991   config.status: creating packaging/win_installer_fedora_i686.nsi
2022-05-20T11:27:05,170   config.status: creating packaging/win_installer_fedora_x86_64.nsi
2022-05-20T11:27:05,350   config.status: creating config.h
2022-05-20T11:27:05,452   config.status: executing depfiles commands
2022-05-20T11:27:14,445   config.status: executing libtool commands
2022-05-20T11:27:14,664   configure:

2022-05-20T11:27:14,665   ======================================
2022-05-20T11:27:14,666       ViennaRNA Package 2.5.0
2022-05-20T11:27:14,666   ======================================

2022-05-20T11:27:14,667   Successfully configured with the following options:

2022-05-20T11:27:14,667   Sub Packages
2022-05-20T11:27:14,668   ------------
2022-05-20T11:27:14,668     * Kinfold                   : no
2022-05-20T11:27:14,668     * RNAforester               : no
2022-05-20T11:27:14,669     * Analyse{Dists,Seqs}       : no
2022-05-20T11:27:14,669     * RNAlocmin                 : no
2022-05-20T11:27:14,669     * Kinwalker                 : no

2022-05-20T11:27:14,670   Extra Libraries
2022-05-20T11:27:14,671   ---------------
2022-05-20T11:27:14,671     * Support Vector Machine    : yes
2022-05-20T11:27:14,672     * GNU Scientific Library    : no
2022-05-20T11:27:14,672     * GNU MPFR                  : no
2022-05-20T11:27:14,672     * JSON                      : yes

2022-05-20T11:27:14,673   Features
2022-05-20T11:27:14,673   --------
2022-05-20T11:27:14,674     * Use hash for NR Sampling  : no
2022-05-20T11:27:14,674     * C11 features              : yes
2022-05-20T11:27:14,674     * TTY colors                : yes
2022-05-20T11:27:14,675     * Float Precision(PF}       : no
2022-05-20T11:27:14,675     * Deprecation Warnings      : no

2022-05-20T11:27:14,676   Optimizations
2022-05-20T11:27:14,676   -------------
2022-05-20T11:27:14,676     * Auto Vectorization        : yes
2022-05-20T11:27:14,677     * Explicit SIMD Extension   : yes
2022-05-20T11:27:14,677     * Link Time Optimization    : yes
2022-05-20T11:27:14,677     * POSIX Threads             : yes
2022-05-20T11:27:14,678     * OpenMP                    : yes

2022-05-20T11:27:14,678   Scripting Language Interfaces
2022-05-20T11:27:14,679   -----------------------------
2022-05-20T11:27:14,679     * Perl 5                    : no
2022-05-20T11:27:14,679     * Python 3.x                : yes
2022-05-20T11:27:14,680     * Python 2.x                : no

2022-05-20T11:27:14,680   Documentation
2022-05-20T11:27:14,681   -------------
2022-05-20T11:27:14,681     * Reference Manual (PDF)    : no
2022-05-20T11:27:14,681     * Reference Manual (HTML)   : no
2022-05-20T11:27:14,682     * Tutorial (PDF)            : no
2022-05-20T11:27:14,682     * Tutorial (HTML)           : no
2022-05-20T11:27:14,682     * CLA (PDF)                 : no

2022-05-20T11:27:14,683   Unit Tests
2022-05-20T11:27:14,683   ----------
2022-05-20T11:27:14,684     * Executable Programs       : yes
2022-05-20T11:27:14,684     * C-Library                 : no
2022-05-20T11:27:14,684     * Perl 5 Interface          : no
2022-05-20T11:27:14,685     * Python 3.x Interface      : yes
2022-05-20T11:27:14,685     * Python 2.x Interface      : no

2022-05-20T11:27:14,686   MacOS X
2022-05-20T11:27:14,686   -------
2022-05-20T11:27:14,686     * Universal Binary          : no
2022-05-20T11:27:14,687     * Installer                 : no
2022-05-20T11:27:14,687     * SDK                       : custom

2022-05-20T11:27:14,688   Install Directories
2022-05-20T11:27:14,688   -------------------
2022-05-20T11:27:14,689     * Executables               : /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin
2022-05-20T11:27:14,689     * Libraries                 : /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib
2022-05-20T11:27:14,690     * Header files              : /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include
2022-05-20T11:27:14,690     * Extra Data                : /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share
2022-05-20T11:27:14,690     * Man pages                 : /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/man
2022-05-20T11:27:14,691     * Documentation             : Not to be installed
2022-05-20T11:27:14,691         (HTML)                  :
2022-05-20T11:27:14,692         (PDF)                   :
2022-05-20T11:27:14,692     * Perl5 Interface           : Not to be installed
2022-05-20T11:27:14,692         (binaries)              :
2022-05-20T11:27:14,692         (scripts)               :
2022-05-20T11:27:14,693     * Python 3.x Interface      :
2022-05-20T11:27:14,693         (binaries)              : /usr/lib/python3.9/dist-packages
2022-05-20T11:27:14,693         (scripts)               : /usr/lib/python3.9/dist-packages
2022-05-20T11:27:14,694     * Python 2.x Interface      : Not to be installed python2 executable missing
2022-05-20T11:27:14,694         (binaries)              :
2022-05-20T11:27:14,694         (scripts)               :

2022-05-20T11:27:14,695   You can run 'make', 'make check', and 'make install' now!
2022-05-20T11:27:15,320   make  all-recursive
2022-05-20T11:27:15,363   make[1]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0'
2022-05-20T11:27:15,412   Making all in src
2022-05-20T11:27:15,443   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T11:27:15,491   Making all in ViennaRNA
2022-05-20T11:27:15,688   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T11:27:15,735   Making all in static
2022-05-20T11:27:15,785   make[4]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T11:27:15,785   make  all-am
2022-05-20T11:27:15,826   make[5]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T11:27:15,827   make[5]: Nothing to be done for 'all-am'.
2022-05-20T11:27:15,827   make[5]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T11:27:15,828   make[4]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T11:27:15,973   make[4]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T11:27:15,989     CC       fold_compound.lo
2022-05-20T11:27:20,875     CC       dist_vars.lo
2022-05-20T11:27:21,636     CC       part_func.lo
2022-05-20T11:27:28,580     CC       part_func_wrappers.lo
2022-05-20T11:27:30,420     CC       pf_fold.lo
2022-05-20T11:27:34,296     CC       pf_multifold.lo
2022-05-20T11:27:36,737     CC       treedist.lo
2022-05-20T11:27:42,183     CC       inverse.lo
2022-05-20T11:27:48,472     CC       ProfileDist.lo
2022-05-20T11:27:51,697     CC       RNAstruct.lo
2022-05-20T11:27:56,307     CC       mfe.lo
2022-05-20T11:28:25,810     CC       mfe_window.lo
2022-05-20T11:28:35,754     CC       mfe_wrappers.lo
2022-05-20T11:28:37,412     CC       mfe_window_wrappers.lo
2022-05-20T11:28:39,001     CC       fold.lo
2022-05-20T11:28:42,791     CC       stringdist.lo
2022-05-20T11:28:47,354     CC       subopt.lo
2022-05-20T11:29:33,268     CC       subopt_zuker.lo
2022-05-20T11:29:44,855     CC       Lfold.lo
2022-05-20T11:29:46,359     CC       cofold.lo
2022-05-20T11:29:48,594     CC       part_func_co.lo
2022-05-20T11:29:51,487     CC       ProfileAln.lo
2022-05-20T11:29:55,265     CC       duplex.lo
2022-05-20T11:30:06,806     CC       alifold.lo
2022-05-20T11:30:09,188     CC       alipfold.lo
2022-05-20T11:30:11,868     CC       LPfold.lo
2022-05-20T11:30:27,882     CC       part_func_up.lo
2022-05-20T11:30:46,620     CC       ribo.lo
2022-05-20T11:30:55,341     CC       MEA.lo
2022-05-20T11:30:59,319     CC       mm.lo
2022-05-20T11:31:03,546     CC       2Dfold.lo
2022-05-20T11:31:47,847     CC       2Dpfold.lo
2022-05-20T11:32:34,679     CC       plex_functions.lo
2022-05-20T11:32:42,434     CC       ali_plex.lo
2022-05-20T11:33:17,274     CC       c_plex.lo
2022-05-20T11:33:38,234     CC       plex.lo
2022-05-20T11:34:22,353     CC       snofold.lo
2022-05-20T11:34:34,204     CC       snoop.lo
2022-05-20T11:35:07,315     CC       gquad.lo
2022-05-20T11:35:16,872     CC       perturbation_fold.lo
2022-05-20T11:35:20,406     CC       centroid.lo
2022-05-20T11:35:22,946     CC       model.lo
2022-05-20T11:35:27,225     CC       dp_matrices.lo
2022-05-20T11:35:35,728     CC       boltzmann_sampling.lo
2022-05-20T11:36:03,104     CC       bs_wrappers.lo
2022-05-20T11:36:05,294     CC       equilibrium_probs.lo
2022-05-20T11:36:56,022     CXX      ../libsvm-3.25/svm.lo
2022-05-20T11:37:20,428     CC       ../json/json.lo
2022-05-20T11:37:27,611     CC       alphabet.lo
2022-05-20T11:37:31,150     CC       sequence.lo
2022-05-20T11:37:35,239     CC       unstructured_domains.lo
2022-05-20T11:37:47,999     CC       grammar.lo
2022-05-20T11:37:49,888     CC       heat_capacity.lo
2022-05-20T11:37:52,029     CC       zscore.lo
2022-05-20T11:37:53,953     CC       libRNA_concentrations_la-concentrations.lo
2022-05-20T11:37:56,140     CXX      ../dlib-19.22/dlib/all/libRNA_concentrations_la-source.lo
2022-05-20T11:39:26,955   In file included from ../dlib-19.22/dlib/all/../cuda/../matrix.h:11,
2022-05-20T11:39:26,956                    from ../dlib-19.22/dlib/all/../cuda/tensor.h:8,
2022-05-20T11:39:26,956                    from ../dlib-19.22/dlib/all/../cuda/cpu_dlib.h:9,
2022-05-20T11:39:26,956                    from ../dlib-19.22/dlib/all/../cuda/cpu_dlib.cpp:8,
2022-05-20T11:39:26,957                    from ../dlib-19.22/dlib/all/source.cpp:82:
2022-05-20T11:39:26,957   ../dlib-19.22/dlib/all/../filtering/kalman_filter.cpp: In function ‘dlib::svd4<dlib::matrix_op<dlib::op_trans<dlib::matrix_op<dlib::op_trans<dlib::matrix<double, 1l, 2l, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout> > > > >, 1l, 1l, 1l, 1l, 2l, 1l, dlib::memory_manager_stateless_kernel_1<char>, dlib::memory_manager_stateless_kernel_1<char>, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>(dlib::svd_u_mode, bool, dlib::matrix_exp<dlib::matrix_op<dlib::op_trans<dlib::matrix_op<dlib::op_trans<dlib::matrix<double, 1l, 2l, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout> > > > > > const&, dlib::matrix<dlib::matrix_op<dlib::op_trans<dlib::matrix_op<dlib::op_trans<dlib::matrix<double, 1l, 2l, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout> > > > >::type, 1l, 1l, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>&, dlib::matrix<dlib::matrix_op<dlib::op_trans<dlib::matrix_op<dlib::op_trans<dlib::matrix<double, 1l, 2l, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout> > > > >::type, 1l, 1l, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>&, dlib::matrix<dlib::matrix_op<dlib::op_trans<dlib::matrix_op<dlib::op_trans<dlib::matrix<double, 1l, 2l, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout> > > > >::type, 2l, 1l, dlib::memory_manager_stateless_kernel_1<char>, dlib::row_major_layout>&)long’:
2022-05-20T11:39:26,961   ../dlib-19.22/dlib/all/../cuda/../matrix/matrix_la.h:225:32: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations]
2022-05-20T11:39:26,962     225 |             y = abs(q(i)) + abs(e(i));
2022-05-20T11:39:26,962         |                             ~~~^~~~~~
2022-05-20T11:39:26,962   ../dlib-19.22/dlib/all/../cuda/../matrix/matrix_la.h:163:20: note: within this loop
2022-05-20T11:39:26,963     163 |         for (i=0; i<n; i++)
2022-05-20T11:39:26,963         |                   ~^~
2022-05-20T11:52:36,297     CXX      libRNA_concentrations_la-wrap_dlib.lo
2022-05-20T11:53:51,375     CXXLD    libRNA_concentrations.la
2022-05-20T11:53:58,886     CC       constraints/constraints.lo
2022-05-20T11:54:00,557     CC       constraints/SHAPE.lo
2022-05-20T11:54:04,753     CC       constraints/hard.lo
2022-05-20T11:54:18,321     CC       constraints/soft.lo
2022-05-20T11:54:26,136     CC       constraints/ligand.lo
2022-05-20T11:54:30,831     CCLD     libRNA_constraints.la
2022-05-20T11:54:31,876     CC       datastructures/basic_datastructures.lo
2022-05-20T11:54:32,936     CC       datastructures/lists.lo
2022-05-20T11:54:34,680     CC       datastructures/char_stream.lo
2022-05-20T11:54:37,810     CC       datastructures/stream_output.lo
2022-05-20T11:54:39,768     CC       datastructures/hash_tables.lo
2022-05-20T11:54:42,374     CC       datastructures/heap.lo
2022-05-20T11:54:44,977     CCLD     libRNA_datastructures.la
2022-05-20T11:54:45,963     CC       utils/utils.lo
2022-05-20T11:54:48,788     CC       utils/string_utils.lo
2022-05-20T11:54:51,713     CC       utils/structure_utils.lo
2022-05-20T11:55:03,110     CC       utils/structure_tree.lo
2022-05-20T11:55:06,025     CC       utils/msa_utils.lo
2022-05-20T11:55:14,872     CC       utils/higher_order_functions.lo
2022-05-20T11:55:16,513     CC       utils/cpu.lo
2022-05-20T11:55:17,752     CC       utils/units.lo
2022-05-20T11:55:19,343     CC       io/io_utils.lo
2022-05-20T11:55:21,490     CC       io/file_formats.lo
2022-05-20T11:55:25,193     CC       io/file_formats_msa.lo
2022-05-20T11:55:30,373     CC       search/BoyerMoore.lo
2022-05-20T11:55:32,590     CC       commands.lo
2022-05-20T11:55:36,971     CC       combinatorics.lo
2022-05-20T11:55:40,966     CC       utils/svm_utils.lo
2022-05-20T11:55:46,001     CCLD     libRNA_utils.la
2022-05-20T11:55:47,269     CC       plotting/alignments.lo
2022-05-20T11:55:51,330     CC       plotting/layouts.lo
2022-05-20T11:55:54,856     CC       plotting/probabilities.lo
2022-05-20T11:56:02,344     CC       plotting/structures.lo
2022-05-20T11:56:10,539     CC       plotting/plot_utils.lo
2022-05-20T11:56:13,109     CC       plotting/naview.lo
2022-05-20T11:56:21,268     CC       plotting/RNApuzzler/RNApuzzler.lo
2022-05-20T11:56:48,154     CC       plotting/RNApuzzler/RNAturtle.lo
2022-05-20T11:56:53,768     CCLD     libRNA_plotting.la
2022-05-20T11:56:54,990     CC       params/io.lo
2022-05-20T11:57:39,679     CC       params/default.lo
2022-05-20T11:57:44,244     CC       params/params.lo
2022-05-20T11:57:56,367     CC       params/convert.lo
2022-05-20T11:58:09,845     CCLD     libRNA_params.la
2022-05-20T11:58:11,247     CC       eval.lo
2022-05-20T11:58:29,037     CC       eval_wrappers.lo
2022-05-20T11:58:32,666     CCLD     libRNA_eval.la
2022-05-20T11:58:33,624     CC       loops/external.lo
2022-05-20T11:58:58,223     CC       loops/external_bt.lo
2022-05-20T11:59:10,448     CC       loops/external_pf.lo
2022-05-20T11:59:18,180     CC       loops/hairpin.lo
2022-05-20T11:59:24,783     CC       loops/hairpin_bt.lo
2022-05-20T11:59:26,674     CC       loops/hairpin_pf.lo
2022-05-20T11:59:33,365     CC       loops/internal.lo
2022-05-20T11:59:54,949     CC       loops/internal_bt.lo
2022-05-20T12:00:12,564     CC       loops/internal_pf.lo
2022-05-20T12:00:32,316     CC       loops/multibranch.lo
2022-05-20T12:00:53,800     CC       loops/multibranch_bt.lo
2022-05-20T12:01:14,342     CC       loops/multibranch_pf.lo
2022-05-20T12:01:24,202     CCLD     libRNA_loops.la
2022-05-20T12:01:25,631     CC       move_set.lo
2022-05-20T12:01:34,666     CC       landscape/move.lo
2022-05-20T12:01:36,454     CC       landscape/findpath.lo
2022-05-20T12:01:40,585     CC       landscape/neighbor.lo
2022-05-20T12:01:55,691     CC       landscape/walk.lo
2022-05-20T12:01:58,860     CCLD     libRNA_landscape.la
2022-05-20T12:01:59,792     CXXLD    libRNA_conv.la
2022-05-20T12:02:19,897     CXXLD    libRNA.la
2022-05-20T12:02:36,231     CC       special_const.lo
2022-05-20T12:02:37,120     CC       ugly_bt.lo
2022-05-20T12:02:52,884     CCLD     libRNA_special_const.la
2022-05-20T12:02:53,825     GEN      libRNA.a
2022-05-20T12:02:59,100   make[4]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T12:02:59,103   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T12:02:59,106   Making all in bin
2022-05-20T12:02:59,238   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/bin'
2022-05-20T12:02:59,253     CC       RNAfold_cmdl.o
2022-05-20T12:03:04,969     CC       RNAfold.o
2022-05-20T12:03:08,382     CC       input_id_helpers.lo
2022-05-20T12:03:10,205     CC       parallel_helpers.lo
2022-05-20T12:03:11,491     CC       ../cthreadpool/thpool.lo
2022-05-20T12:03:13,767     CCLD     libhelpers.la
2022-05-20T12:03:14,650     CCLD     RNAfold
2022-05-20T12:06:25,114     CC       RNAeval_cmdl.o
2022-05-20T12:06:29,641     CC       RNAeval.o
2022-05-20T12:06:31,755     CCLD     RNAeval
2022-05-20T12:07:16,721     CC       RNAheat_cmdl.o
2022-05-20T12:07:20,872     CC       RNAheat.o
2022-05-20T12:07:22,360     CCLD     RNAheat
2022-05-20T12:09:13,584     CC       RNApdist_cmdl.o
2022-05-20T12:09:16,380     CC       RNApdist.o
2022-05-20T12:09:17,882     CCLD     RNApdist
2022-05-20T12:10:28,973     CC       RNAdistance_cmdl.o
2022-05-20T12:10:31,019     CC       RNAdistance.o
2022-05-20T12:10:33,603     CCLD     RNAdistance
2022-05-20T12:10:44,277     CC       RNAinverse_cmdl.o
2022-05-20T12:10:46,965     CC       RNAinverse.o
2022-05-20T12:10:48,367     CCLD     RNAinverse
2022-05-20T12:13:06,414     CC       RNAplot_cmdl.o
2022-05-20T12:13:10,417     CC       RNAplot.o
2022-05-20T12:13:12,376     CCLD     RNAplot
2022-05-20T12:13:41,127     CC       RNAsubopt_cmdl.o
2022-05-20T12:13:46,041     CC       RNAsubopt.o
2022-05-20T12:13:48,268     CCLD     RNAsubopt
2022-05-20T12:16:52,189     CC       RNALfold_cmdl.o
2022-05-20T12:16:56,132     CC       RNALfold.o
2022-05-20T12:16:57,870     CCLD     RNALfold
2022-05-20T12:18:32,046     CC       RNAcofold_cmdl.o
2022-05-20T12:18:37,244     CC       RNAcofold.o
2022-05-20T12:18:40,463     CCLD     RNAcofold
2022-05-20T12:21:26,443     CC       RNApaln_cmdl.o
2022-05-20T12:21:29,348     CC       RNApaln.o
2022-05-20T12:21:31,023     CCLD     RNApaln
2022-05-20T12:23:43,845     CC       RNAduplex_cmdl.o
2022-05-20T12:23:46,445     CC       RNAduplex.o
2022-05-20T12:23:47,451     CCLD     RNAduplex
2022-05-20T12:24:02,844     CC       RNAalifold_cmdl.o
2022-05-20T12:24:09,467     CC       RNAalifold.o
2022-05-20T12:24:12,786     CCLD     RNAalifold
2022-05-20T12:27:20,155     CC       RNAplfold_cmdl.o
2022-05-20T12:27:24,235     CC       RNAplfold.o
2022-05-20T12:27:26,815     CCLD     RNAplfold
2022-05-20T12:28:19,727     CC       RNAup_cmdl.o
2022-05-20T12:28:23,561     CC       RNAup.o
2022-05-20T12:28:27,294     CCLD     RNAup
2022-05-20T12:30:48,609     CC       RNAaliduplex_cmdl.o
2022-05-20T12:30:51,052     CC       RNAaliduplex.o
2022-05-20T12:30:51,933     CCLD     RNAaliduplex
2022-05-20T12:31:07,699     CC       RNALalifold_cmdl.o
2022-05-20T12:31:12,862     CC       RNALalifold.o
2022-05-20T12:31:14,985     CCLD     RNALalifold
2022-05-20T12:33:05,914     CC       RNA2Dfold_cmdl.o
2022-05-20T12:33:09,321     CC       RNA2Dfold.o
2022-05-20T12:33:11,346     CCLD     RNA2Dfold
2022-05-20T12:35:28,837     CC       RNAparconv_cmdl.o
2022-05-20T12:35:31,476     CC       RNAparconv.o
2022-05-20T12:35:32,250     CCLD     RNAparconv
2022-05-20T12:35:40,430     CC       RNAPKplex_cmdl.o
2022-05-20T12:35:42,855     CC       RNAPKplex.o
2022-05-20T12:35:44,113     CCLD     RNAPKplex
2022-05-20T12:37:53,013     CC       RNAplex_cmdl.o
2022-05-20T12:37:56,105     CC       RNAplex.o
2022-05-20T12:38:05,118     CCLD     RNAplex
2022-05-20T12:40:18,591     CC       RNAsnoop_cmdl.o
2022-05-20T12:40:22,191     CC       RNAsnoop.o
2022-05-20T12:40:26,242     CCLD     RNAsnoop
2022-05-20T12:41:07,066     CC       RNApvmin_cmdl.o
2022-05-20T12:41:10,858     CC       RNApvmin.o
2022-05-20T12:41:12,048     CCLD     RNApvmin
2022-05-20T12:43:15,718     CC       RNAdos_cmdl.o
2022-05-20T12:43:18,081     CC       RNAdos.o
2022-05-20T12:43:21,982     CCLD     RNAdos
2022-05-20T12:44:25,449     CC       RNAmultifold_cmdl.o
2022-05-20T12:44:29,605     CC       RNAmultifold.o
2022-05-20T12:44:33,482     CCLD     RNAmultifold
2022-05-20T12:47:44,948   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/bin'
2022-05-20T12:47:44,951   Making all in Utils
2022-05-20T12:47:45,033   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/Utils'
2022-05-20T12:47:45,049     CC       b2ct.o
2022-05-20T12:47:45,851     CCLD     b2ct
2022-05-20T12:47:47,889     CC       popt.o
2022-05-20T12:47:48,533     CCLD     popt
2022-05-20T12:47:50,946     CC       ct2db_cmdl.o
2022-05-20T12:47:52,934     CC       ct2db.o
2022-05-20T12:47:54,094     CCLD     ct2db
2022-05-20T12:48:02,278   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/Utils'
2022-05-20T12:48:02,308   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T12:48:02,309   make[3]: Nothing to be done for 'all-am'.
2022-05-20T12:48:02,309   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T12:48:02,313   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T12:48:02,317   Making all in man
2022-05-20T12:48:02,351   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/man'
2022-05-20T12:48:02,352   make[2]: Nothing to be done for 'all'.
2022-05-20T12:48:02,352   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/man'
2022-05-20T12:48:02,355   Making all in misc
2022-05-20T12:48:02,390   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/misc'
2022-05-20T12:48:02,391   make[2]: Nothing to be done for 'all'.
2022-05-20T12:48:02,391   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/misc'
2022-05-20T12:48:02,395   Making all in doc
2022-05-20T12:48:02,428   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T12:48:02,477   Making all in CLA
2022-05-20T12:48:02,507   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc/CLA'
2022-05-20T12:48:02,508   make[3]: Nothing to be done for 'all'.
2022-05-20T12:48:02,508   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc/CLA'
2022-05-20T12:48:02,537   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T12:48:02,537   make[3]: Nothing to be done for 'all-am'.
2022-05-20T12:48:02,538   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T12:48:02,540   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T12:48:02,544   Making all in RNA-Tutorial
2022-05-20T12:48:02,574   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/RNA-Tutorial'
2022-05-20T12:48:02,574   make[2]: Nothing to be done for 'all'.
2022-05-20T12:48:02,575   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/RNA-Tutorial'
2022-05-20T12:48:02,578   Making all in interfaces
2022-05-20T12:48:02,611   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces'
2022-05-20T12:48:02,657   Making all in Python
2022-05-20T12:48:02,712   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces/Python'
2022-05-20T12:48:02,727     SWIG     RNA_wrap.cpp
2022-05-20T12:48:31,802     CXX      _RNA_la-RNA_wrap.lo
2022-05-20T13:02:46,347     CXXLD    _RNA.la
2022-05-20T13:20:08,889     GEN      RNA/__init__.py
2022-05-20T13:20:08,980     GEN      RNA/_RNA.cpython-39-arm-linux-gnueabihf.so
2022-05-20T13:20:10,862     GEN      RNA/__pycache__/__init__.cpython-39.pyc
2022-05-20T13:20:11,503     GEN      RNA/__pycache__/__init__.cpython-39.opt-1.pyc
2022-05-20T13:20:12,593   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces/Python'
2022-05-20T13:20:12,635   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces'
2022-05-20T13:20:12,635   make[3]: Nothing to be done for 'all-am'.
2022-05-20T13:20:12,636   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces'
2022-05-20T13:20:12,638   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces'
2022-05-20T13:20:12,642   Making all in tests
2022-05-20T13:20:12,712   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/tests'
2022-05-20T13:20:12,712   make  all-am
2022-05-20T13:20:12,770   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/tests'
2022-05-20T13:20:12,770   make[3]: Nothing to be done for 'all-am'.
2022-05-20T13:20:12,771   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/tests'
2022-05-20T13:20:12,771   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/tests'
2022-05-20T13:20:12,775   Making all in examples
2022-05-20T13:20:12,816   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/examples'
2022-05-20T13:20:12,816   make[2]: Nothing to be done for 'all'.
2022-05-20T13:20:12,817   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/examples'
2022-05-20T13:20:12,819   Making all in packaging/macosx
2022-05-20T13:20:12,850   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/packaging/macosx'
2022-05-20T13:20:12,851   make[2]: Nothing to be done for 'all'.
2022-05-20T13:20:12,851   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/packaging/macosx'
2022-05-20T13:20:12,883   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0'
2022-05-20T13:20:12,916   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0'
2022-05-20T13:20:12,919   make[1]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0'
2022-05-20T13:20:13,009   Making install in src
2022-05-20T13:20:13,040   make[1]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T13:20:13,087   Making install in ViennaRNA
2022-05-20T13:20:13,858   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T13:20:13,905   Making install in static
2022-05-20T13:20:13,952   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T13:20:13,952   make  install-am
2022-05-20T13:20:13,993   make[4]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T13:20:14,033   make[5]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T13:20:14,033   make[5]: Nothing to be done for 'install-exec-am'.
2022-05-20T13:20:14,034   make[5]: Nothing to be done for 'install-data-am'.
2022-05-20T13:20:14,034   make[5]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T13:20:14,034   make[4]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T13:20:14,035   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA/static'
2022-05-20T13:20:16,008   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T13:20:17,581   make[4]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T13:20:17,598    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib'
2022-05-20T13:20:17,618    /bin/bash ../../libtool   --mode=install /usr/bin/install -c   libRNA.la '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib'
2022-05-20T13:20:17,896   libtool: install: /usr/bin/install -c .libs/libRNA.lai /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib/libRNA.la
2022-05-20T13:20:17,938   libtool: install: /usr/bin/install -c .libs/libRNA.a /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib/libRNA.a
2022-05-20T13:20:20,721   libtool: install: chmod 644 /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib/libRNA.a
2022-05-20T13:20:20,756   libtool: install: gcc-ranlib /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib/libRNA.a
2022-05-20T13:20:26,687   libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib
2022-05-20T13:20:26,733   ----------------------------------------------------------------------
2022-05-20T13:20:26,733   Libraries have been installed in:
2022-05-20T13:20:26,734      /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/lib

2022-05-20T13:20:26,735   If you ever happen to want to link against installed libraries
2022-05-20T13:20:26,735   in a given directory, LIBDIR, you must either use libtool, and
2022-05-20T13:20:26,736   specify the full pathname of the library, or use the '-LLIBDIR'
2022-05-20T13:20:26,736   flag during linking and do at least one of the following:
2022-05-20T13:20:26,737      - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
2022-05-20T13:20:26,737        during execution
2022-05-20T13:20:26,738      - add LIBDIR to the 'LD_RUN_PATH' environment variable
2022-05-20T13:20:26,738        during linking
2022-05-20T13:20:26,739      - use the '-Wl,-rpath -Wl,LIBDIR' linker flag
2022-05-20T13:20:26,740      - have your system administrator add LIBDIR to '/etc/ld.so.conf'

2022-05-20T13:20:26,741   See any operating system documentation about shared libraries for
2022-05-20T13:20:26,741   more information, such as the ld(1) and ld.so(8) manual pages.
2022-05-20T13:20:26,742   ----------------------------------------------------------------------
2022-05-20T13:20:26,762    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA'
2022-05-20T13:20:26,808    /usr/bin/install -c -m 644 vrna_config.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA'
2022-05-20T13:20:26,880    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA'
2022-05-20T13:20:26,931    /usr/bin/install -c -m 644 concentrations.h wrap_dlib.h pair_mat.h RNAstruct.h dist_vars.h mfe.h mfe_window.h fold.h part_func.h part_func_window.h pf_multifold.h stringdist.h edit_cost.h fold_vars.h profiledist.h treedist.h inverse.h subopt.h subopt_zuker.h cofold.h duplex.h alifold.h part_func_co.h ProfileAln.h LPfold.h Lfold.h part_func_up.h ribo.h findpath.h data_structures.h char_stream.h stream_output.h fold_compound.h MEA.h mm.h loop_energies.h exterior_loops.h hairpin_loops.h interior_loops.h multibranch_loops.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA'
2022-05-20T13:20:27,072    /usr/bin/install -c -m 644 2Dfold.h 2Dpfold.h PKplex.h pk_plex.h ali_plex.h plex.h snofold.h snoop.h move_set.h gquad.h constraints.h eval.h perturbation_fold.h centroid.h utils.h structure_utils.h string_utils.h aln_util.h model.h dp_matrices.h PS_dot.h plot_structure.h plot_aln.h plot_utils.h plot_layouts.h naview.h boltzmann_sampling.h equilibrium_probs.h constraints_ligand.h constraints_SHAPE.h constraints_hard.h constraints_soft.h alphabet.h sequence.h grammar.h structured_domains.h unstructured_domains.h file_utils.h file_formats.h file_formats_msa.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA'
2022-05-20T13:20:27,213    /usr/bin/install -c -m 644 energy_par.h energy_const.h params.h read_epars.h convert_epars.h commands.h units.h combinatorics.h neighbor.h walk.h heat_capacity.h svm_utils.h ../libsvm-3.25/svm.h ../json/json.h zscore.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA'
2022-05-20T13:20:27,291    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/constraints'
2022-05-20T13:20:27,333    /usr/bin/install -c -m 644 constraints/basic.h constraints/ligand.h constraints/SHAPE.h constraints/hard.h constraints/soft.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/constraints'
2022-05-20T13:20:27,392    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/datastructures'
2022-05-20T13:20:27,437    /usr/bin/install -c -m 644 datastructures/basic.h datastructures/lists.h datastructures/char_stream.h datastructures/stream_output.h datastructures/hash_tables.h datastructures/heap.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/datastructures'
2022-05-20T13:20:27,496    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/io'
2022-05-20T13:20:27,541    /usr/bin/install -c -m 644 io/utils.h io/file_formats.h io/file_formats_msa.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/io'
2022-05-20T13:20:27,591    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/landscape'
2022-05-20T13:20:27,634    /usr/bin/install -c -m 644 landscape/paths.h landscape/findpath.h landscape/neighbor.h landscape/walk.h landscape/move.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/landscape'
2022-05-20T13:20:27,691    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/loops'
2022-05-20T13:20:27,735    /usr/bin/install -c -m 644 loops/all.h loops/external.h loops/hairpin.h loops/internal.h loops/multibranch.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/loops'
2022-05-20T13:20:27,792    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/params'
2022-05-20T13:20:27,835    /usr/bin/install -c -m 644 params/default.h params/constants.h params/basic.h params/io.h params/convert.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/params'
2022-05-20T13:20:27,892    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/plotting'
2022-05-20T13:20:27,936    /usr/bin/install -c -m 644 plotting/alignments.h plotting/layouts.h plotting/probabilities.h plotting/structures.h plotting/utils.h plotting/naview.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/plotting'
2022-05-20T13:20:27,995    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/plotting/RNApuzzler'
2022-05-20T13:20:28,038    /usr/bin/install -c -m 644 plotting/RNApuzzler/RNApuzzler.h plotting/RNApuzzler/RNAturtle.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/plotting/RNApuzzler'
2022-05-20T13:20:28,084    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/search'
2022-05-20T13:20:28,127    /usr/bin/install -c -m 644 search/BoyerMoore.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/search'
2022-05-20T13:20:28,172    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/utils'
2022-05-20T13:20:28,216    /usr/bin/install -c -m 644 utils/basic.h utils/strings.h utils/structures.h utils/alignments.h utils/higher_order_functions.h utils/cpu.h utils/units.h utils/svm.h '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/include/ViennaRNA/utils'
2022-05-20T13:20:28,267   make[4]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T13:20:28,271   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T13:20:28,275   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/ViennaRNA'
2022-05-20T13:20:28,278   Making install in bin
2022-05-20T13:20:28,692   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/bin'
2022-05-20T13:20:29,019   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/bin'
2022-05-20T13:20:29,035    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin'
2022-05-20T13:20:29,100     /bin/bash ../../libtool   --mode=install /usr/bin/install -c RNAfold RNAeval RNAheat RNApdist RNAdistance RNAinverse RNAplot RNAsubopt RNALfold RNAcofold RNApaln RNAduplex RNAalifold RNAplfold RNAup RNAaliduplex RNALalifold RNA2Dfold RNAparconv RNAPKplex RNAplex RNAsnoop RNApvmin RNAdos RNAmultifold '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin'
2022-05-20T13:20:29,424   libtool: install: /usr/bin/install -c RNAfold /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAfold
2022-05-20T13:20:29,716   libtool: install: /usr/bin/install -c RNAeval /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAeval
2022-05-20T13:20:29,880   libtool: install: /usr/bin/install -c RNAheat /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAheat
2022-05-20T13:20:30,115   libtool: install: /usr/bin/install -c RNApdist /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNApdist
2022-05-20T13:20:30,316   libtool: install: /usr/bin/install -c RNAdistance /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAdistance
2022-05-20T13:20:30,392   libtool: install: /usr/bin/install -c RNAinverse /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAinverse
2022-05-20T13:20:30,649   libtool: install: /usr/bin/install -c RNAplot /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAplot
2022-05-20T13:20:30,762   libtool: install: /usr/bin/install -c RNAsubopt /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAsubopt
2022-05-20T13:20:31,044   libtool: install: /usr/bin/install -c RNALfold /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNALfold
2022-05-20T13:20:31,263   libtool: install: /usr/bin/install -c RNAcofold /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAcofold
2022-05-20T13:20:31,546   libtool: install: /usr/bin/install -c RNApaln /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNApaln
2022-05-20T13:20:31,758   libtool: install: /usr/bin/install -c RNAduplex /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAduplex
2022-05-20T13:20:31,915   libtool: install: /usr/bin/install -c RNAalifold /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAalifold
2022-05-20T13:20:32,210   libtool: install: /usr/bin/install -c RNAplfold /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAplfold
2022-05-20T13:20:32,404   libtool: install: /usr/bin/install -c RNAup /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAup
2022-05-20T13:20:32,646   libtool: install: /usr/bin/install -c RNAaliduplex /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAaliduplex
2022-05-20T13:20:32,806   libtool: install: /usr/bin/install -c RNALalifold /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNALalifold
2022-05-20T13:20:33,061   libtool: install: /usr/bin/install -c RNA2Dfold /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNA2Dfold
2022-05-20T13:20:33,297   libtool: install: /usr/bin/install -c RNAparconv /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAparconv
2022-05-20T13:20:33,392   libtool: install: /usr/bin/install -c RNAPKplex /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAPKplex
2022-05-20T13:20:33,648   libtool: install: /usr/bin/install -c RNAplex /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAplex
2022-05-20T13:20:33,897   libtool: install: /usr/bin/install -c RNAsnoop /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAsnoop
2022-05-20T13:20:34,037   libtool: install: /usr/bin/install -c RNApvmin /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNApvmin
2022-05-20T13:20:34,296   libtool: install: /usr/bin/install -c RNAdos /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAdos
2022-05-20T13:20:34,485   libtool: install: /usr/bin/install -c RNAmultifold /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/RNAmultifold
2022-05-20T13:20:35,078   make[3]: Nothing to be done for 'install-data-am'.
2022-05-20T13:20:35,078   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/bin'
2022-05-20T13:20:35,079   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/bin'
2022-05-20T13:20:35,083   Making install in Utils
2022-05-20T13:20:35,204   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/Utils'
2022-05-20T13:20:35,315   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/Utils'
2022-05-20T13:20:35,330    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin'
2022-05-20T13:20:35,387     /bin/bash ../../libtool   --mode=install /usr/bin/install -c b2ct popt ct2db '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin'
2022-05-20T13:20:35,678   libtool: install: /usr/bin/install -c b2ct /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/b2ct
2022-05-20T13:20:35,739   libtool: install: /usr/bin/install -c popt /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/popt
2022-05-20T13:20:35,808   libtool: install: /usr/bin/install -c ct2db /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/bin/ct2db
2022-05-20T13:20:35,883    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/ViennaRNA/bin'
2022-05-20T13:20:35,938    /usr/bin/install -c b2mt.pl dpzoom.pl mountain.pl relplot.pl rotate_ss.pl cmount.pl coloraln.pl refold.pl switch.pl RNAdesign.pl '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/ViennaRNA/bin'
2022-05-20T13:20:35,997   make  install-data-hook
2022-05-20T13:20:36,053   make[4]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/Utils'
2022-05-20T13:20:36,068     GEN      install-data-hook
2022-05-20T13:20:36,371   make[4]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/Utils'
2022-05-20T13:20:36,372   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/Utils'
2022-05-20T13:20:36,373   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src/Utils'
2022-05-20T13:20:36,403   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T13:20:36,442   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T13:20:36,442   make[3]: Nothing to be done for 'install-exec-am'.
2022-05-20T13:20:36,443   make[3]: Nothing to be done for 'install-data-am'.
2022-05-20T13:20:36,443   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T13:20:36,444   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T13:20:36,446   make[1]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/src'
2022-05-20T13:20:36,449   Making install in man
2022-05-20T13:20:36,490   make[1]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/man'
2022-05-20T13:20:36,531   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/man'
2022-05-20T13:20:36,531   make[2]: Nothing to be done for 'install-exec-am'.
2022-05-20T13:20:36,573    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/info'
2022-05-20T13:20:36,658    /usr/bin/install -c -m 644 ./RNAlib.info '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/info'
2022-05-20T13:20:36,742    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/man/man1'
2022-05-20T13:20:36,835    /usr/bin/install -c -m 644 RNA2Dfold.1 RNAaliduplex.1 RNAalifold.1 RNAcofold.1 RNAduplex.1 RNAeval.1 RNAfold.1 RNAheat.1 RNAinverse.1 RNALalifold.1 RNALfold.1 RNAmultifold.1 RNApaln.1 RNAparconv.1 RNAplfold.1 RNAplot.1 RNApvmin.1 RNAsubopt.1 RNAup.1 RNAPKplex.1 RNAsnoop.1 RNAplex.1 RNAdistance.1 RNApdist.1 RNAdos.1 ct2db.1 '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/man/man1'
2022-05-20T13:20:36,963   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/man'
2022-05-20T13:20:36,964   make[1]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/man'
2022-05-20T13:20:36,966   Making install in misc
2022-05-20T13:20:36,996   make[1]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/misc'
2022-05-20T13:20:37,034   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/misc'
2022-05-20T13:20:37,035   make[2]: Nothing to be done for 'install-exec-am'.
2022-05-20T13:20:37,051    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/ViennaRNA'
2022-05-20T13:20:37,095    /usr/bin/install -c -m 644 2Dlandscape_mfe.gri 2Dlandscape_pf.gri rna_turner1999.par rna_turner2004.par rna_andronescu2007.par dna_mathews1999.par dna_mathews2004.par rna_langdon2018.par rna_misc_special_hairpins.par 2Dlandscape.R '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/ViennaRNA'
2022-05-20T13:20:37,245   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/misc'
2022-05-20T13:20:37,246   make[1]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/misc'
2022-05-20T13:20:37,249   Making install in doc
2022-05-20T13:20:37,281   make[1]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T13:20:37,330   Making install in CLA
2022-05-20T13:20:37,359   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc/CLA'
2022-05-20T13:20:37,400   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc/CLA'
2022-05-20T13:20:37,400   make[3]: Nothing to be done for 'install-exec-am'.
2022-05-20T13:20:37,401   make[3]: Nothing to be done for 'install-data-am'.
2022-05-20T13:20:37,401   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc/CLA'
2022-05-20T13:20:37,402   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc/CLA'
2022-05-20T13:20:37,432   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T13:20:37,473   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T13:20:37,473   make[3]: Nothing to be done for 'install-exec-am'.
2022-05-20T13:20:37,491    /usr/bin/mkdir -p '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/ViennaRNA'
2022-05-20T13:20:37,534    /usr/bin/install -c -m 644 viennarna.bib DoxygenLayout.xml '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/5a0e259a-3e84-4561-995d-902b71a38375/share/ViennaRNA'
2022-05-20T13:20:37,565   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T13:20:37,566   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T13:20:37,570   make[1]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/doc'
2022-05-20T13:20:37,572   Making install in RNA-Tutorial
2022-05-20T13:20:37,603   make[1]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/RNA-Tutorial'
2022-05-20T13:20:37,644   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/RNA-Tutorial'
2022-05-20T13:20:37,644   make[2]: Nothing to be done for 'install-exec-am'.
2022-05-20T13:20:38,037   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/RNA-Tutorial'
2022-05-20T13:20:38,038   make[1]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/RNA-Tutorial'
2022-05-20T13:20:38,041   Making install in interfaces
2022-05-20T13:20:38,071   make[1]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces'
2022-05-20T13:20:38,118   Making install in Python
2022-05-20T13:20:38,383   make[2]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces/Python'
2022-05-20T13:20:38,456   make[3]: Entering directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces/Python'
2022-05-20T13:20:38,471    /usr/bin/mkdir -p '/usr/lib/python3.9/dist-packages/RNA'
2022-05-20T13:20:38,490   /usr/bin/mkdir: cannot create directory ‘/usr/lib/python3.9/dist-packages/RNA’: Permission denied
2022-05-20T13:20:38,494   make[3]: *** [Makefile:770: install-pkgpyexecDATA] Error 1
2022-05-20T13:20:38,494   make[3]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces/Python'
2022-05-20T13:20:38,495   make[2]: *** [Makefile:887: install-am] Error 2
2022-05-20T13:20:38,496   make[2]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces/Python'
2022-05-20T13:20:38,501   make[1]: *** [Makefile:632: install-recursive] Error 1
2022-05-20T13:20:38,501   make[1]: Leaving directory '/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/ViennaRNA-2.5.0/interfaces'
2022-05-20T13:20:38,505   make: *** [Makefile:689: install-recursive] Error 1
2022-05-20T13:20:38,509   Traceback (most recent call last):
2022-05-20T13:20:38,510     File "<string>", line 2, in <module>
2022-05-20T13:20:38,510     File "<pip-setuptools-caller>", line 34, in <module>
2022-05-20T13:20:38,510     File "/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/setup.py", line 110, in <module>
2022-05-20T13:20:38,512       setup(
2022-05-20T13:20:38,512     File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 87, in setup
2022-05-20T13:20:38,513       return distutils.core.setup(**attrs)
2022-05-20T13:20:38,514     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/core.py", line 148, in setup
2022-05-20T13:20:38,514       return run_commands(dist)
2022-05-20T13:20:38,515     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/core.py", line 163, in run_commands
2022-05-20T13:20:38,516       dist.run_commands()
2022-05-20T13:20:38,516     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 967, in run_commands
2022-05-20T13:20:38,518       self.run_command(cmd)
2022-05-20T13:20:38,518     File "/usr/local/lib/python3.9/dist-packages/setuptools/dist.py", line 1229, in run_command
2022-05-20T13:20:38,520       super().run_command(command)
2022-05-20T13:20:38,521     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 986, in run_command
2022-05-20T13:20:38,523       cmd_obj.run()
2022-05-20T13:20:38,523     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 259, in run
2022-05-20T13:20:38,524       self.run_command('install')
2022-05-20T13:20:38,525     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py", line 313, in run_command
2022-05-20T13:20:38,526       self.distribution.run_command(command)
2022-05-20T13:20:38,526     File "/usr/local/lib/python3.9/dist-packages/setuptools/dist.py", line 1229, in run_command
2022-05-20T13:20:38,528       super().run_command(command)
2022-05-20T13:20:38,529     File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 986, in run_command
2022-05-20T13:20:38,531       cmd_obj.run()
2022-05-20T13:20:38,531     File "/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/setup.py", line 107, in run
2022-05-20T13:20:38,532       self.compile_and_install_ViennaRNA()
2022-05-20T13:20:38,532     File "/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/setup.py", line 101, in compile_and_install_ViennaRNA
2022-05-20T13:20:38,533       subprocess.check_call('make install', cwd=src_path, shell=True)
2022-05-20T13:20:38,533     File "/usr/lib/python3.9/subprocess.py", line 373, in check_call
2022-05-20T13:20:38,534       raise CalledProcessError(retcode, cmd)
2022-05-20T13:20:38,534   subprocess.CalledProcessError: Command 'make install' returned non-zero exit status 2.
2022-05-20T13:20:39,043   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2022-05-20T13:20:39,083   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2022-05-20T13:20:39,083   exec(compile('"'"''"'"''"'"'
2022-05-20T13:20:39,083   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2022-05-20T13:20:39,083   #
2022-05-20T13:20:39,083   # - It imports setuptools before invoking setup.py, to enable projects that directly
2022-05-20T13:20:39,083   #   import from `distutils.core` to work with newer packaging standards.
2022-05-20T13:20:39,083   # - It provides a clear error message when setuptools is not installed.
2022-05-20T13:20:39,083   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2022-05-20T13:20:39,083   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2022-05-20T13:20:39,083   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2022-05-20T13:20:39,083   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2022-05-20T13:20:39,083   import os, sys, tokenize
2022-05-20T13:20:39,083   
2022-05-20T13:20:39,083   try:
2022-05-20T13:20:39,083       import setuptools
2022-05-20T13:20:39,083   except ImportError as error:
2022-05-20T13:20:39,083       print(
2022-05-20T13:20:39,083           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2022-05-20T13:20:39,083           "the build environment.",
2022-05-20T13:20:39,083           file=sys.stderr,
2022-05-20T13:20:39,083       )
2022-05-20T13:20:39,083       sys.exit(1)
2022-05-20T13:20:39,083   
2022-05-20T13:20:39,083   __file__ = %r
2022-05-20T13:20:39,083   sys.argv[0] = __file__
2022-05-20T13:20:39,083   
2022-05-20T13:20:39,083   if os.path.exists(__file__):
2022-05-20T13:20:39,083       filename = __file__
2022-05-20T13:20:39,083       with tokenize.open(__file__) as f:
2022-05-20T13:20:39,083           setup_py_code = f.read()
2022-05-20T13:20:39,083   else:
2022-05-20T13:20:39,083       filename = "<auto-generated setuptools caller>"
2022-05-20T13:20:39,083       setup_py_code = "from setuptools import setup; setup()"
2022-05-20T13:20:39,083   
2022-05-20T13:20:39,083   exec(compile(setup_py_code, filename, "exec"))
2022-05-20T13:20:39,083   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-osp69r6g[/]
2022-05-20T13:20:39,083   [bold magenta]cwd[/]: /tmp/pip-wheel-oejve0jm/viennarna_20c2a23315024c8f8402552ef0f12efe/
2022-05-20T13:20:39,084   Building wheel for viennarna (setup.py): finished with status 'error'
2022-05-20T13:20:39,086   ERROR: Failed building wheel for viennarna
2022-05-20T13:20:39,088   Running setup.py clean for viennarna
2022-05-20T13:20:39,090   Running command python setup.py clean
2022-05-20T13:20:44,245   running clean
2022-05-20T13:20:44,334   removing 'build/lib' (and everything under it)
2022-05-20T13:20:44,338   'build/bdist.linux-armv7l' does not exist -- can't clean it
2022-05-20T13:20:44,339   'build/scripts-3.9' does not exist -- can't clean it
2022-05-20T13:20:44,349   removing 'build'
2022-05-20T13:20:44,538 Failed to build viennarna
2022-05-20T13:20:44,542 ERROR: Failed to build one or more wheels
2022-05-20T13:20:44,545 Exception information:
2022-05-20T13:20:44,545 Traceback (most recent call last):
2022-05-20T13:20:44,545   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper
2022-05-20T13:20:44,545     status = run_func(*args)
2022-05-20T13:20:44,545   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2022-05-20T13:20:44,545     return func(self, options, args)
2022-05-20T13:20:44,545   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 175, in run
2022-05-20T13:20:44,545     raise CommandError("Failed to build one or more wheels")
2022-05-20T13:20:44,545 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2022-05-20T13:20:44,553 Removed build tracker: '/tmp/pip-build-tracker-zy9dwbrc'