2022-05-20T21:49:43,764 Created temporary directory: /tmp/pip-ephem-wheel-cache-0h9nxr5i
2022-05-20T21:49:43,770 Created temporary directory: /tmp/pip-build-tracker-rdv3ktzl
2022-05-20T21:49:43,770 Initialized build tracking at /tmp/pip-build-tracker-rdv3ktzl
2022-05-20T21:49:43,771 Created build tracker: /tmp/pip-build-tracker-rdv3ktzl
2022-05-20T21:49:43,771 Entered build tracker: /tmp/pip-build-tracker-rdv3ktzl
2022-05-20T21:49:43,772 Created temporary directory: /tmp/pip-wheel-pd7m6npi
2022-05-20T21:49:43,842 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-05-20T21:49:43,850 2 location(s) to search for versions of calorine:
2022-05-20T21:49:43,850 * https://pypi.org/simple/calorine/
2022-05-20T21:49:43,850 * https://www.piwheels.org/simple/calorine/
2022-05-20T21:49:43,852 Fetching project page and analyzing links: https://pypi.org/simple/calorine/
2022-05-20T21:49:43,853 Getting page https://pypi.org/simple/calorine/
2022-05-20T21:49:43,856 Found index url https://pypi.org/simple
2022-05-20T21:49:43,967   Found link https://files.pythonhosted.org/packages/12/1b/629c5c5c05ce38726b3cb8123032e930fcf40287f07da6e5e72417eedd18/calorine-1.0.tar.gz#sha256=d1c6ecf184b0f4c1eff896391547e38da6ecf2962edfa7886fc867cd80a3347b (from https://pypi.org/simple/calorine/), version: 1.0
2022-05-20T21:49:43,968 Fetching project page and analyzing links: https://www.piwheels.org/simple/calorine/
2022-05-20T21:49:43,969 Getting page https://www.piwheels.org/simple/calorine/
2022-05-20T21:49:43,971 Found index url https://www.piwheels.org/simple
2022-05-20T21:49:44,176   Skipping link: No binaries permitted for calorine: https://www.piwheels.org/simple/calorine/calorine-1.0-cp37-cp37m-linux_armv7l.whl#sha256=f40b9e6da126bb222aa48362a8bd94c26acd6d5d8201b5d570c60ccb67a2ec4f (from https://www.piwheels.org/simple/calorine/)
2022-05-20T21:49:44,176   Skipping link: No binaries permitted for calorine: https://www.piwheels.org/simple/calorine/calorine-1.0-cp37-cp37m-linux_armv6l.whl#sha256=f40b9e6da126bb222aa48362a8bd94c26acd6d5d8201b5d570c60ccb67a2ec4f (from https://www.piwheels.org/simple/calorine/)
2022-05-20T21:49:44,177 Skipping link: not a file: https://www.piwheels.org/simple/calorine/
2022-05-20T21:49:44,177 Skipping link: not a file: https://pypi.org/simple/calorine/
2022-05-20T21:49:44,221 Given no hashes to check 1 links for project 'calorine': discarding no candidates
2022-05-20T21:49:44,263 Collecting calorine==1.0
2022-05-20T21:49:44,267   Created temporary directory: /tmp/pip-unpack-ne385m2q
2022-05-20T21:49:44,362   Downloading calorine-1.0.tar.gz (385 kB)
2022-05-20T21:49:45,075   Added calorine==1.0 from https://files.pythonhosted.org/packages/12/1b/629c5c5c05ce38726b3cb8123032e930fcf40287f07da6e5e72417eedd18/calorine-1.0.tar.gz#sha256=d1c6ecf184b0f4c1eff896391547e38da6ecf2962edfa7886fc867cd80a3347b to build tracker '/tmp/pip-build-tracker-rdv3ktzl'
2022-05-20T21:49:45,079   Running setup.py (path:/tmp/pip-wheel-pd7m6npi/calorine_e9ed28915bd441a2b380b20c6600e36d/setup.py) egg_info for package calorine
2022-05-20T21:49:45,080   Created temporary directory: /tmp/pip-pip-egg-info-dfw8sh9j
2022-05-20T21:49:45,081   Preparing metadata (setup.py): started
2022-05-20T21:49:45,083   Running command python setup.py egg_info
2022-05-20T21:49:51,714   running egg_info
2022-05-20T21:49:51,720   creating /tmp/pip-pip-egg-info-dfw8sh9j/calorine.egg-info
2022-05-20T21:49:52,323   writing /tmp/pip-pip-egg-info-dfw8sh9j/calorine.egg-info/PKG-INFO
2022-05-20T21:49:52,885   writing dependency_links to /tmp/pip-pip-egg-info-dfw8sh9j/calorine.egg-info/dependency_links.txt
2022-05-20T21:49:55,676   writing requirements to /tmp/pip-pip-egg-info-dfw8sh9j/calorine.egg-info/requires.txt
2022-05-20T21:49:56,234   writing top-level names to /tmp/pip-pip-egg-info-dfw8sh9j/calorine.egg-info/top_level.txt
2022-05-20T21:49:56,237   writing manifest file '/tmp/pip-pip-egg-info-dfw8sh9j/calorine.egg-info/SOURCES.txt'
2022-05-20T21:49:56,945   reading manifest file '/tmp/pip-pip-egg-info-dfw8sh9j/calorine.egg-info/SOURCES.txt'
2022-05-20T21:49:56,952   writing manifest file '/tmp/pip-pip-egg-info-dfw8sh9j/calorine.egg-info/SOURCES.txt'
2022-05-20T21:49:57,171   Preparing metadata (setup.py): finished with status 'done'
2022-05-20T21:49:57,182   Source in /tmp/pip-wheel-pd7m6npi/calorine_e9ed28915bd441a2b380b20c6600e36d has version 1.0, which satisfies requirement calorine==1.0 from https://files.pythonhosted.org/packages/12/1b/629c5c5c05ce38726b3cb8123032e930fcf40287f07da6e5e72417eedd18/calorine-1.0.tar.gz#sha256=d1c6ecf184b0f4c1eff896391547e38da6ecf2962edfa7886fc867cd80a3347b
2022-05-20T21:49:57,184   Removed calorine==1.0 from https://files.pythonhosted.org/packages/12/1b/629c5c5c05ce38726b3cb8123032e930fcf40287f07da6e5e72417eedd18/calorine-1.0.tar.gz#sha256=d1c6ecf184b0f4c1eff896391547e38da6ecf2962edfa7886fc867cd80a3347b from build tracker '/tmp/pip-build-tracker-rdv3ktzl'
2022-05-20T21:49:57,195 Created temporary directory: /tmp/pip-unpack-cefks9ab
2022-05-20T21:49:57,196 Building wheels for collected packages: calorine
2022-05-20T21:49:57,206   Created temporary directory: /tmp/pip-wheel-2tiddvfd
2022-05-20T21:49:57,206   Building wheel for calorine (setup.py): started
2022-05-20T21:49:57,208   Destination directory: /tmp/pip-wheel-2tiddvfd
2022-05-20T21:49:57,209   Running command python setup.py bdist_wheel
2022-05-20T21:50:03,301   running bdist_wheel
2022-05-20T21:50:03,439   running build
2022-05-20T21:50:03,440   running build_py
2022-05-20T21:50:04,046   creating build
2022-05-20T21:50:04,046   creating build/lib.linux-armv7l-cpython-39
2022-05-20T21:50:04,047   creating build/lib.linux-armv7l-cpython-39/calorine
2022-05-20T21:50:04,050   copying calorine/io.py -> build/lib.linux-armv7l-cpython-39/calorine
2022-05-20T21:50:04,058   copying calorine/ase_calculator.py -> build/lib.linux-armv7l-cpython-39/calorine
2022-05-20T21:50:04,063   copying calorine/analysis.py -> build/lib.linux-armv7l-cpython-39/calorine
2022-05-20T21:50:04,066   copying calorine/data_analysis.py -> build/lib.linux-armv7l-cpython-39/calorine
2022-05-20T21:50:04,070   copying calorine/__init__.py -> build/lib.linux-armv7l-cpython-39/calorine
2022-05-20T21:50:04,074   creating build/lib.linux-armv7l-cpython-39/calorine/nepy
2022-05-20T21:50:04,076   copying calorine/nepy/nep.py -> build/lib.linux-armv7l-cpython-39/calorine/nepy
2022-05-20T21:50:04,080   copying calorine/nepy/__init__.py -> build/lib.linux-armv7l-cpython-39/calorine/nepy
2022-05-20T21:50:04,085   running build_ext
2022-05-20T21:50:04,104   creating tmp
2022-05-20T21:50:04,105   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /tmp/tmpxwxwj9id.cpp -o tmp/tmpxwxwj9id.o -std=c++14
2022-05-20T21:50:04,290   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c /tmp/tmphhrg35po.cpp -o tmp/tmphhrg35po.o -fvisibility=hidden
2022-05-20T21:50:04,467   building '_nepy' extension
2022-05-20T21:50:04,468   creating build/temp.linux-armv7l-cpython-39
2022-05-20T21:50:04,469   creating build/temp.linux-armv7l-cpython-39/src
2022-05-20T21:50:04,470   creating build/temp.linux-armv7l-cpython-39/src/nepy
2022-05-20T21:50:04,471   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/nepy/pybind11/include/ -I/usr/include/python3.9 -c src/nepy/nepy.cpp -o build/temp.linux-armv7l-cpython-39/src/nepy/nepy.o -DVERSION_INFO='1.0' -std=c++14 -O3 -fvisibility=hidden
2022-05-20T21:50:08,063   In file included from src/nepy/nepy.cpp:1:
2022-05-20T21:50:08,063   src/nepy/nep.cpp: In member function ‘void NEP3::compute(const std::vector<int>&, const std::vector<double>&, const std::vector<double>&, std::vector<double>&, std::vector<double>&, std::vector<double>&)’:
2022-05-20T21:50:08,064   src/nepy/nep.cpp:1445:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,064    1445 |   if (N * 3 != position.size()) {
2022-05-20T21:50:08,064         |       ~~~~~~^~~~~~~~~~~~~~~~~~
2022-05-20T21:50:08,065   src/nepy/nep.cpp:1449:9: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,065    1449 |   if (N != potential.size()) {
2022-05-20T21:50:08,066         |       ~~^~~~~~~~~~~~~~~~~~~
2022-05-20T21:50:08,067   src/nepy/nep.cpp:1454:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,068    1454 |   if (N * 3 != force.size()) {
2022-05-20T21:50:08,068         |       ~~~~~~^~~~~~~~~~~~~~~
2022-05-20T21:50:08,069   src/nepy/nep.cpp:1458:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,069    1458 |   if (N * 9 != virial.size()) {
2022-05-20T21:50:08,070         |       ~~~~~~^~~~~~~~~~~~~~~~
2022-05-20T21:50:08,071   src/nepy/nep.cpp:1465:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,071    1465 |   for (int n = 0; n < potential.size(); ++n) {
2022-05-20T21:50:08,072         |                   ~~^~~~~~~~~~~~~~~~~~
2022-05-20T21:50:08,072   src/nepy/nep.cpp:1468:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,073    1468 |   for (int n = 0; n < force.size(); ++n) {
2022-05-20T21:50:08,073         |                   ~~^~~~~~~~~~~~~~
2022-05-20T21:50:08,073   src/nepy/nep.cpp:1471:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,074    1471 |   for (int n = 0; n < virial.size(); ++n) {
2022-05-20T21:50:08,074         |                   ~~^~~~~~~~~~~~~~~
2022-05-20T21:50:08,081   src/nepy/nep.cpp: In member function ‘void NEP3::find_descriptor(const std::vector<int>&, const std::vector<double>&, const std::vector<double>&, std::vector<double>&)’:
2022-05-20T21:50:08,081   src/nepy/nep.cpp:1512:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,082    1512 |   if (N * 3 != position.size()) {
2022-05-20T21:50:08,082         |       ~~~~~~^~~~~~~~~~~~~~~~~~
2022-05-20T21:50:08,083   src/nepy/nep.cpp:1516:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2022-05-20T21:50:08,083    1516 |   if (N * annmb.dim != descriptor.size()) {
2022-05-20T21:50:08,083         |       ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2022-05-20T21:50:31,103   src/nepy/nep.cpp: In function ‘void {anonymous}::find_force_angular_small_box(NEP3::ParaMB, NEP3::ANN, int, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, double*, double*, double*, double*)’:
2022-05-20T21:50:31,104   src/nepy/nep.cpp:211:14: warning: ‘t2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-05-20T21:50:31,104     211 |     fn = (t2 + 1.0) * 0.5;
2022-05-20T21:50:31,104         |          ~~~~^~~~~~
2022-05-20T21:50:31,105   src/nepy/nep.cpp:199:12: note: ‘t2’ was declared here
2022-05-20T21:50:31,105     199 |     double t2;
2022-05-20T21:50:31,106         |            ^~
2022-05-20T21:50:34,743   src/nepy/nep.cpp: In function ‘void {anonymous}::find_descriptor_small_box(bool, NEP3::ParaMB, NEP3::ANN, int, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, double*, double*, double*)’:
2022-05-20T21:50:34,744   src/nepy/nep.cpp:174:14: warning: ‘t2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-05-20T21:50:34,744     174 |     fn = (t2 + 1.0) * 0.5 * fc12;
2022-05-20T21:50:34,744         |          ~~~~^~~~~~
2022-05-20T21:50:34,745   src/nepy/nep.cpp:168:12: note: ‘t2’ was declared here
2022-05-20T21:50:34,745     168 |     double t2;
2022-05-20T21:50:34,745         |            ^~
2022-05-20T21:51:16,121   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/nepy/nepy.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/_nepy.cpython-39-arm-linux-gnueabihf.so -DVERSION_INFO='1.0' -std=c++14 -O3 -fvisibility=hidden
2022-05-20T21:51:17,859   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-05-20T21:51:17,860     warnings.warn(
2022-05-20T21:51:18,466   installing to build/bdist.linux-armv7l/wheel
2022-05-20T21:51:18,466   running install
2022-05-20T21:51:18,529   running install_lib
2022-05-20T21:51:19,135   creating build/bdist.linux-armv7l
2022-05-20T21:51:19,136   creating build/bdist.linux-armv7l/wheel
2022-05-20T21:51:19,139   creating build/bdist.linux-armv7l/wheel/calorine
2022-05-20T21:51:19,140   copying build/lib.linux-armv7l-cpython-39/calorine/io.py -> build/bdist.linux-armv7l/wheel/calorine
2022-05-20T21:51:19,146   copying build/lib.linux-armv7l-cpython-39/calorine/ase_calculator.py -> build/bdist.linux-armv7l/wheel/calorine
2022-05-20T21:51:19,151   copying build/lib.linux-armv7l-cpython-39/calorine/analysis.py -> build/bdist.linux-armv7l/wheel/calorine
2022-05-20T21:51:19,155   copying build/lib.linux-armv7l-cpython-39/calorine/data_analysis.py -> build/bdist.linux-armv7l/wheel/calorine
2022-05-20T21:51:19,160   creating build/bdist.linux-armv7l/wheel/calorine/nepy
2022-05-20T21:51:19,161   copying build/lib.linux-armv7l-cpython-39/calorine/nepy/nep.py -> build/bdist.linux-armv7l/wheel/calorine/nepy
2022-05-20T21:51:19,166   copying build/lib.linux-armv7l-cpython-39/calorine/nepy/__init__.py -> build/bdist.linux-armv7l/wheel/calorine/nepy
2022-05-20T21:51:19,169   copying build/lib.linux-armv7l-cpython-39/calorine/__init__.py -> build/bdist.linux-armv7l/wheel/calorine
2022-05-20T21:51:19,172   copying build/lib.linux-armv7l-cpython-39/_nepy.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2022-05-20T21:51:19,311   running install_egg_info
2022-05-20T21:51:20,558   running egg_info
2022-05-20T21:51:21,161   writing calorine.egg-info/PKG-INFO
2022-05-20T21:51:21,723   writing dependency_links to calorine.egg-info/dependency_links.txt
2022-05-20T21:51:24,513   writing requirements to calorine.egg-info/requires.txt
2022-05-20T21:51:25,074   writing top-level names to calorine.egg-info/top_level.txt
2022-05-20T21:51:25,129   reading manifest file 'calorine.egg-info/SOURCES.txt'
2022-05-20T21:51:25,178   writing manifest file 'calorine.egg-info/SOURCES.txt'
2022-05-20T21:51:25,181   Copying calorine.egg-info to build/bdist.linux-armv7l/wheel/calorine-1.0-py3.9.egg-info
2022-05-20T21:51:25,206   running install_scripts
2022-05-20T21:51:25,376   creating build/bdist.linux-armv7l/wheel/calorine-1.0.dist-info/WHEEL
2022-05-20T21:51:25,381   creating '/tmp/pip-wheel-2tiddvfd/calorine-1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-05-20T21:51:26,580   adding '_nepy.cpython-39-arm-linux-gnueabihf.so'
2022-05-20T21:51:26,650   adding 'calorine/__init__.py'
2022-05-20T21:51:26,654   adding 'calorine/analysis.py'
2022-05-20T21:51:26,659   adding 'calorine/ase_calculator.py'
2022-05-20T21:51:26,663   adding 'calorine/data_analysis.py'
2022-05-20T21:51:26,670   adding 'calorine/io.py'
2022-05-20T21:51:26,674   adding 'calorine/nepy/__init__.py'
2022-05-20T21:51:26,678   adding 'calorine/nepy/nep.py'
2022-05-20T21:51:26,683   adding 'calorine-1.0.dist-info/METADATA'
2022-05-20T21:51:26,685   adding 'calorine-1.0.dist-info/WHEEL'
2022-05-20T21:51:26,688   adding 'calorine-1.0.dist-info/top_level.txt'
2022-05-20T21:51:26,690   adding 'calorine-1.0.dist-info/RECORD'
2022-05-20T21:51:26,721   removing build/bdist.linux-armv7l/wheel
2022-05-20T21:51:27,004   Building wheel for calorine (setup.py): finished with status 'done'
2022-05-20T21:51:27,041   Created wheel for calorine: filename=calorine-1.0-cp39-cp39-linux_armv7l.whl size=991649 sha256=19582f5985781dca6d58bacdb947d1956345ffe73d62312ef2922e5fe2b0274e
2022-05-20T21:51:27,043   Stored in directory: /tmp/pip-ephem-wheel-cache-0h9nxr5i/wheels/cc/2e/86/8dcd7e919de9d90e420e5dcf388668f567fcdde6336b55bfa5
2022-05-20T21:51:27,066 Successfully built calorine
2022-05-20T21:51:27,144 Removed build tracker: '/tmp/pip-build-tracker-rdv3ktzl'