2022-05-24T00:56:29,670 Created temporary directory: /tmp/pip-ephem-wheel-cache-uqgiiy0k 2022-05-24T00:56:29,676 Created temporary directory: /tmp/pip-build-tracker-sslng6ni 2022-05-24T00:56:29,676 Initialized build tracking at /tmp/pip-build-tracker-sslng6ni 2022-05-24T00:56:29,677 Created build tracker: /tmp/pip-build-tracker-sslng6ni 2022-05-24T00:56:29,677 Entered build tracker: /tmp/pip-build-tracker-sslng6ni 2022-05-24T00:56:29,678 Created temporary directory: /tmp/pip-wheel-8u3z3hy7 2022-05-24T00:56:29,741 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-24T00:56:29,749 2 location(s) to search for versions of pyinseq: 2022-05-24T00:56:29,749 * https://pypi.org/simple/pyinseq/ 2022-05-24T00:56:29,749 * https://www.piwheels.org/simple/pyinseq/ 2022-05-24T00:56:29,750 Fetching project page and analyzing links: https://pypi.org/simple/pyinseq/ 2022-05-24T00:56:29,751 Getting page https://pypi.org/simple/pyinseq/ 2022-05-24T00:56:29,754 Found index url https://pypi.org/simple 2022-05-24T00:56:29,871 Found link https://files.pythonhosted.org/packages/19/4b/5c2913ecee7b792d5863d5cd8f484314f92ecc02a7a429023e99c5356397/pyinseq-0.1.tar.gz#sha256=a1f8cdec0d28eafc441915dd8698d44161edb9dbe4229e658c2f2b9db9305118 (from https://pypi.org/simple/pyinseq/), version: 0.1 2022-05-24T00:56:29,872 Found link https://files.pythonhosted.org/packages/65/1e/d90f6648dfdf012bef8c28d8ae223787280ff336965ffedd1d3b46e705bc/pyinseq-0.1.1.tar.gz#sha256=d93d1534da55a0ad89ea2c9becbb8db5bd5df767273eab395a334a62cb3ca9d2 (from https://pypi.org/simple/pyinseq/), version: 0.1.1 2022-05-24T00:56:29,873 Found link https://files.pythonhosted.org/packages/97/ac/67a8f633f983598cc441ff5f89cd236d2a708416fc494b6646ca08b771ab/pyinseq-0.2.0.tar.gz#sha256=ef438880849ac104e953309630d5f03432c755579a76cca414e0de8cf1e4bd5d (from https://pypi.org/simple/pyinseq/), version: 0.2.0 2022-05-24T00:56:29,874 Skipping link: No binaries permitted for pyinseq: https://files.pythonhosted.org/packages/f9/0b/4a44adae9e1b048b755f6fa0ae1e9bdf5c3e53d816600a7219422413d455/pyinseq-0.3.0-py3-none-any.whl#sha256=73e992f399a2c81e891b12d50029e6017c862eef3973fb0448c94b9c7bf54e36 (from https://pypi.org/simple/pyinseq/) (requires-python:!=3.8.*,>=3.6.*) 2022-05-24T00:56:29,876 Found link https://files.pythonhosted.org/packages/3d/61/7e53e34ea9c779880632c59401c0f52b378b172ce1e65b57f3b2f406caa1/pyinseq-0.3.0.tar.gz#sha256=e40884917c2d63d36a2a69bcf74bbbcb5b0513eb1b74706179f9ac98cdb802e7 (from https://pypi.org/simple/pyinseq/) (requires-python:!=3.8.*,>=3.6.*), version: 0.3.0 2022-05-24T00:56:29,877 Skipping link: No binaries permitted for pyinseq: https://files.pythonhosted.org/packages/1f/f6/251c7e6dcca547298eb8fb8c1654cdb379e688e93c0fec064956d9b624b9/pyinseq-0.3.1-py3-none-any.whl#sha256=a25bd87acf1ad571438617e1c0e7c47e71385592b8f0ca0fd105a11ef7f0f69c (from https://pypi.org/simple/pyinseq/) (requires-python:!=3.8.*,>=3.6.*) 2022-05-24T00:56:29,878 Found link https://files.pythonhosted.org/packages/39/fa/0199a9fe0e0ba1e445d4b7238f27c5533a7279f239f249156e397e12e6dd/pyinseq-0.3.1.tar.gz#sha256=8de9718a3559a6c5ec8280febdc6f3ffa83dda71e556d16d09d4e30e7632aa0f (from https://pypi.org/simple/pyinseq/) (requires-python:!=3.8.*,>=3.6.*), version: 0.3.1 2022-05-24T00:56:29,879 Skipping link: No binaries permitted for pyinseq: https://files.pythonhosted.org/packages/26/2f/a5dc8099103281daa1955903b843328fa0ce3bb7e10115f0dc71bc64b4d0/pyinseq-0.3.2-py3-none-any.whl#sha256=a17f52eadc7700bf71b68eb804ef6270bc6f9ac3e98d7d12f6c554c16edffe7d (from https://pypi.org/simple/pyinseq/) (requires-python:!=3.9.*,>=3.7.*) 2022-05-24T00:56:29,881 Found link https://files.pythonhosted.org/packages/a7/8f/779d521bdbf12ec2a26d68baff550c7f7eb4447c662448d0145b46e92fab/pyinseq-0.3.2.tar.gz#sha256=081f7d9aa81518949eb80c0f5fd9ed485b45b2a8ca4f755ba2414d84a81d6b43 (from https://pypi.org/simple/pyinseq/) (requires-python:!=3.9.*,>=3.7.*), version: 0.3.2 2022-05-24T00:56:29,882 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyinseq/ 2022-05-24T00:56:29,882 Getting page https://www.piwheels.org/simple/pyinseq/ 2022-05-24T00:56:29,884 Found index url https://www.piwheels.org/simple 2022-05-24T00:56:30,102 Skipping link: No binaries permitted for pyinseq: https://www.piwheels.org/simple/pyinseq/pyinseq-0.3.1-py3-none-any.whl#sha256=a25bd87acf1ad571438617e1c0e7c47e71385592b8f0ca0fd105a11ef7f0f69c (from https://www.piwheels.org/simple/pyinseq/) (requires-python:!=3.8.*,>=3.6.*) 2022-05-24T00:56:30,102 Skipping link: No binaries permitted for pyinseq: https://www.piwheels.org/simple/pyinseq/pyinseq-0.3.0-py3-none-any.whl#sha256=73e992f399a2c81e891b12d50029e6017c862eef3973fb0448c94b9c7bf54e36 (from https://www.piwheels.org/simple/pyinseq/) (requires-python:!=3.8.*,>=3.6.*) 2022-05-24T00:56:30,103 Skipping link: No binaries permitted for pyinseq: https://www.piwheels.org/simple/pyinseq/pyinseq-0.2.0-py3-none-any.whl#sha256=daee83ce7d0f3e7ac78eb227ebf0ac4e362f3b2f716e3fa3b466a8bdd22c78d0 (from https://www.piwheels.org/simple/pyinseq/) 2022-05-24T00:56:30,104 Skipping link: No binaries permitted for pyinseq: https://www.piwheels.org/simple/pyinseq/pyinseq-0.1.1-py3-none-any.whl#sha256=16270b737a3bcab82bec4f830482410eb83e95ac7f6f3b18d26ae742aa88887a (from https://www.piwheels.org/simple/pyinseq/) 2022-05-24T00:56:30,104 Skipping link: No binaries permitted for pyinseq: https://www.piwheels.org/simple/pyinseq/pyinseq-0.1-py3-none-any.whl#sha256=edb0e54cdce54dc90f823958783e83d4301b85471efebc7d7ad44aab051b7a1b (from https://www.piwheels.org/simple/pyinseq/) 2022-05-24T00:56:30,105 Skipping link: not a file: https://www.piwheels.org/simple/pyinseq/ 2022-05-24T00:56:30,105 Skipping link: not a file: https://pypi.org/simple/pyinseq/ 2022-05-24T00:56:30,138 Given no hashes to check 1 links for project 'pyinseq': discarding no candidates 2022-05-24T00:56:30,166 Collecting pyinseq==0.3.2 2022-05-24T00:56:30,171 Created temporary directory: /tmp/pip-unpack-kd7shij7 2022-05-24T00:56:32,099 Downloading pyinseq-0.3.2.tar.gz (37.2 MB) 2022-05-24T00:56:50,109 Added pyinseq==0.3.2 from https://files.pythonhosted.org/packages/a7/8f/779d521bdbf12ec2a26d68baff550c7f7eb4447c662448d0145b46e92fab/pyinseq-0.3.2.tar.gz#sha256=081f7d9aa81518949eb80c0f5fd9ed485b45b2a8ca4f755ba2414d84a81d6b43 to build tracker '/tmp/pip-build-tracker-sslng6ni' 2022-05-24T00:56:50,118 Created temporary directory: /tmp/pip-build-env-yazmkhvm 2022-05-24T00:56:50,131 Created temporary directory: /tmp/pip-standalone-pip-ils_dl0t 2022-05-24T00:56:52,452 Installing build dependencies: started 2022-05-24T00:56:52,455 Running command pip subprocess to install build dependencies 2022-05-24T00:57:02,095 Using pip 22.1 from /tmp/pip-standalone-pip-ils_dl0t/__env_pip__.zip/pip (python 3.7) 2022-05-24T00:57:03,419 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-24T00:57:07,337 Collecting setuptools>=40.8.0 2022-05-24T00:57:07,618 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.3.2-py3-none-any.whl (1.2 MB) 2022-05-24T00:57:08,276 Collecting wheel 2022-05-24T00:57:08,310 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-05-24T00:57:12,753 Installing collected packages: wheel, setuptools 2022-05-24T00:57:13,023 Creating /tmp/pip-build-env-yazmkhvm/overlay/bin 2022-05-24T00:57:13,027 changing mode of /tmp/pip-build-env-yazmkhvm/overlay/bin/wheel to 755 2022-05-24T00:57:17,882 Successfully installed setuptools-62.3.2 wheel-0.37.1 2022-05-24T00:57:18,511 Installing build dependencies: finished with status 'done' 2022-05-24T00:57:18,538 Getting requirements to build wheel: started 2022-05-24T00:57:18,540 Running command Getting requirements to build wheel 2022-05-24T00:57:20,887 Getting requirements to build wheel: finished with status 'done' 2022-05-24T00:57:20,918 Created temporary directory: /tmp/pip-standalone-pip-ybl2zox6 2022-05-24T00:57:23,177 Installing backend dependencies: started 2022-05-24T00:57:23,179 Running command pip subprocess to install backend dependencies 2022-05-24T00:57:32,688 Using pip 22.1 from /tmp/pip-standalone-pip-ybl2zox6/__env_pip__.zip/pip (python 3.7) 2022-05-24T00:57:33,998 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-24T00:57:34,727 Collecting pytest-runner 2022-05-24T00:57:34,770 Using cached https://www.piwheels.org/simple/pytest-runner/pytest_runner-6.0.0-py3-none-any.whl (7.2 kB) 2022-05-24T00:57:38,712 Installing collected packages: pytest-runner 2022-05-24T00:57:38,792 Successfully installed pytest-runner-6.0.0 2022-05-24T00:57:39,341 Installing backend dependencies: finished with status 'done' 2022-05-24T00:57:39,362 Created temporary directory: /tmp/pip-modern-metadata-u4fgps8g 2022-05-24T00:57:39,368 Preparing metadata (pyproject.toml): started 2022-05-24T00:57:39,371 Running command Preparing metadata (pyproject.toml) 2022-05-24T00:57:46,891 running dist_info 2022-05-24T00:57:47,549 creating /tmp/pip-modern-metadata-u4fgps8g/pyinseq.egg-info 2022-05-24T00:57:48,176 writing /tmp/pip-modern-metadata-u4fgps8g/pyinseq.egg-info/PKG-INFO 2022-05-24T00:57:48,771 writing dependency_links to /tmp/pip-modern-metadata-u4fgps8g/pyinseq.egg-info/dependency_links.txt 2022-05-24T00:57:51,722 writing requirements to /tmp/pip-modern-metadata-u4fgps8g/pyinseq.egg-info/requires.txt 2022-05-24T00:57:52,313 writing top-level names to /tmp/pip-modern-metadata-u4fgps8g/pyinseq.egg-info/top_level.txt 2022-05-24T00:57:52,316 writing manifest file '/tmp/pip-modern-metadata-u4fgps8g/pyinseq.egg-info/SOURCES.txt' 2022-05-24T00:57:53,088 reading manifest file '/tmp/pip-modern-metadata-u4fgps8g/pyinseq.egg-info/SOURCES.txt' 2022-05-24T00:57:53,091 reading manifest template 'MANIFEST.in' 2022-05-24T00:57:53,145 adding license file 'LICENSE.md' 2022-05-24T00:57:53,160 writing manifest file '/tmp/pip-modern-metadata-u4fgps8g/pyinseq.egg-info/SOURCES.txt' 2022-05-24T00:57:53,163 creating '/tmp/pip-modern-metadata-u4fgps8g/pyinseq-0.3.2.dist-info' 2022-05-24T00:57:53,419 adding license file "LICENSE.md" (matched pattern "LICENSE.md") 2022-05-24T00:57:53,651 Preparing metadata (pyproject.toml): finished with status 'done' 2022-05-24T00:57:53,669 Source in /tmp/pip-wheel-8u3z3hy7/pyinseq_524493b2fbd644a0bc52a44ea8f3684e has version 0.3.2, which satisfies requirement pyinseq==0.3.2 from https://files.pythonhosted.org/packages/a7/8f/779d521bdbf12ec2a26d68baff550c7f7eb4447c662448d0145b46e92fab/pyinseq-0.3.2.tar.gz#sha256=081f7d9aa81518949eb80c0f5fd9ed485b45b2a8ca4f755ba2414d84a81d6b43 2022-05-24T00:57:53,671 Removed pyinseq==0.3.2 from https://files.pythonhosted.org/packages/a7/8f/779d521bdbf12ec2a26d68baff550c7f7eb4447c662448d0145b46e92fab/pyinseq-0.3.2.tar.gz#sha256=081f7d9aa81518949eb80c0f5fd9ed485b45b2a8ca4f755ba2414d84a81d6b43 from build tracker '/tmp/pip-build-tracker-sslng6ni' 2022-05-24T00:57:53,690 Created temporary directory: /tmp/pip-unpack-tsexre6a 2022-05-24T00:57:53,691 Building wheels for collected packages: pyinseq 2022-05-24T00:57:53,701 Created temporary directory: /tmp/pip-wheel-1dmmd3x8 2022-05-24T00:57:53,701 Destination directory: /tmp/pip-wheel-1dmmd3x8 2022-05-24T00:57:53,706 Building wheel for pyinseq (pyproject.toml): started 2022-05-24T00:57:53,708 Running command Building wheel for pyinseq (pyproject.toml) 2022-05-24T00:58:00,810 running bdist_wheel 2022-05-24T00:58:02,058 running build 2022-05-24T00:58:02,059 running build_py 2022-05-24T00:58:02,745 creating build 2022-05-24T00:58:02,746 creating build/lib 2022-05-24T00:58:02,747 creating build/lib/pyinseq 2022-05-24T00:58:02,749 copying pyinseq/process_mapping.py -> build/lib/pyinseq 2022-05-24T00:58:02,754 copying pyinseq/pipeline.py -> build/lib/pyinseq 2022-05-24T00:58:02,757 copying pyinseq/demultiplex.py -> build/lib/pyinseq 2022-05-24T00:58:02,761 copying pyinseq/parsers.py -> build/lib/pyinseq 2022-05-24T00:58:02,766 copying pyinseq/analyze.py -> build/lib/pyinseq 2022-05-24T00:58:02,771 copying pyinseq/gbk_convert.py -> build/lib/pyinseq 2022-05-24T00:58:02,776 copying pyinseq/logger.py -> build/lib/pyinseq 2022-05-24T00:58:02,780 copying pyinseq/__init__.py -> build/lib/pyinseq 2022-05-24T00:58:02,783 copying pyinseq/map_reads.py -> build/lib/pyinseq 2022-05-24T00:58:02,787 copying pyinseq/config.py -> build/lib/pyinseq 2022-05-24T00:58:02,791 copying pyinseq/utils.py -> build/lib/pyinseq 2022-05-24T00:58:02,795 copying pyinseq/settings.py -> build/lib/pyinseq 2022-05-24T00:58:02,801 creating build/lib/pyinseq/tests 2022-05-24T00:58:02,803 copying pyinseq/tests/test_utils.py -> build/lib/pyinseq/tests 2022-05-24T00:58:02,807 copying pyinseq/tests/test_script.py -> build/lib/pyinseq/tests 2022-05-24T00:58:02,812 copying pyinseq/tests/__init__.py -> build/lib/pyinseq/tests 2022-05-24T00:58:02,815 copying pyinseq/tests/test_functions.py -> build/lib/pyinseq/tests 2022-05-24T00:58:02,819 creating build/lib/pyinseq/workflows 2022-05-24T00:58:02,821 copying pyinseq/workflows/__init__.py -> build/lib/pyinseq/workflows 2022-05-24T00:58:02,825 running egg_info 2022-05-24T00:58:04,114 writing pyinseq.egg-info/PKG-INFO 2022-05-24T00:58:04,711 writing dependency_links to pyinseq.egg-info/dependency_links.txt 2022-05-24T00:58:07,699 writing requirements to pyinseq.egg-info/requires.txt 2022-05-24T00:58:08,293 writing top-level names to pyinseq.egg-info/top_level.txt 2022-05-24T00:58:08,341 reading manifest file 'pyinseq.egg-info/SOURCES.txt' 2022-05-24T00:58:08,381 reading manifest template 'MANIFEST.in' 2022-05-24T00:58:08,423 adding license file 'LICENSE.md' 2022-05-24T00:58:08,443 writing manifest file 'pyinseq.egg-info/SOURCES.txt' 2022-05-24T00:58:08,459 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,460 ############################ 2022-05-24T00:58:08,460 # Package would be ignored # 2022-05-24T00:58:08,461 ############################ 2022-05-24T00:58:08,461 Python recognizes 'pyinseq.envs' as an importable package, however it is 2022-05-24T00:58:08,461 included in the distribution as "data". 2022-05-24T00:58:08,462 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,462 therefore is considered deprecated). 2022-05-24T00:58:08,462 Please make sure that 'pyinseq.envs' is included as a package by using 2022-05-24T00:58:08,463 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,463 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,464 documentation page. 2022-05-24T00:58:08,465 !! 2022-05-24T00:58:08,465 check.warn(importable) 2022-05-24T00:58:08,465 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,466 ############################ 2022-05-24T00:58:08,467 # Package would be ignored # 2022-05-24T00:58:08,467 ############################ 2022-05-24T00:58:08,468 Python recognizes 'pyinseq.tests.data.additional' as an importable package, however it is 2022-05-24T00:58:08,468 included in the distribution as "data". 2022-05-24T00:58:08,468 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,469 therefore is considered deprecated). 2022-05-24T00:58:08,469 Please make sure that 'pyinseq.tests.data.additional' is included as a package by using 2022-05-24T00:58:08,470 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,470 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,471 documentation page. 2022-05-24T00:58:08,472 !! 2022-05-24T00:58:08,472 check.warn(importable) 2022-05-24T00:58:08,473 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,474 ############################ 2022-05-24T00:58:08,474 # Package would be ignored # 2022-05-24T00:58:08,475 ############################ 2022-05-24T00:58:08,475 Python recognizes 'pyinseq.tests.data.input' as an importable package, however it is 2022-05-24T00:58:08,476 included in the distribution as "data". 2022-05-24T00:58:08,476 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,477 therefore is considered deprecated). 2022-05-24T00:58:08,478 Please make sure that 'pyinseq.tests.data.input' is included as a package by using 2022-05-24T00:58:08,478 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,479 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,479 documentation page. 2022-05-24T00:58:08,480 !! 2022-05-24T00:58:08,480 check.warn(importable) 2022-05-24T00:58:08,481 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,482 ############################ 2022-05-24T00:58:08,482 # Package would be ignored # 2022-05-24T00:58:08,482 ############################ 2022-05-24T00:58:08,483 Python recognizes 'pyinseq.tests.data.output_demultiplex' as an importable package, however it is 2022-05-24T00:58:08,483 included in the distribution as "data". 2022-05-24T00:58:08,483 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,483 therefore is considered deprecated). 2022-05-24T00:58:08,484 Please make sure that 'pyinseq.tests.data.output_demultiplex' is included as a package by using 2022-05-24T00:58:08,484 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,485 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,485 documentation page. 2022-05-24T00:58:08,486 !! 2022-05-24T00:58:08,487 check.warn(importable) 2022-05-24T00:58:08,487 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,488 ############################ 2022-05-24T00:58:08,488 # Package would be ignored # 2022-05-24T00:58:08,488 ############################ 2022-05-24T00:58:08,489 Python recognizes 'pyinseq.tests.data.output_demultiplex.raw_data' as an importable package, however it is 2022-05-24T00:58:08,489 included in the distribution as "data". 2022-05-24T00:58:08,489 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,490 therefore is considered deprecated). 2022-05-24T00:58:08,490 Please make sure that 'pyinseq.tests.data.output_demultiplex.raw_data' is included as a package by using 2022-05-24T00:58:08,490 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,491 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,491 documentation page. 2022-05-24T00:58:08,492 !! 2022-05-24T00:58:08,493 check.warn(importable) 2022-05-24T00:58:08,493 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,494 ############################ 2022-05-24T00:58:08,494 # Package would be ignored # 2022-05-24T00:58:08,494 ############################ 2022-05-24T00:58:08,495 Python recognizes 'pyinseq.tests.data.output_demultiplex_notrim' as an importable package, however it is 2022-05-24T00:58:08,495 included in the distribution as "data". 2022-05-24T00:58:08,495 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,496 therefore is considered deprecated). 2022-05-24T00:58:08,496 Please make sure that 'pyinseq.tests.data.output_demultiplex_notrim' is included as a package by using 2022-05-24T00:58:08,497 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,498 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,498 documentation page. 2022-05-24T00:58:08,499 !! 2022-05-24T00:58:08,500 check.warn(importable) 2022-05-24T00:58:08,500 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,501 ############################ 2022-05-24T00:58:08,501 # Package would be ignored # 2022-05-24T00:58:08,501 ############################ 2022-05-24T00:58:08,502 Python recognizes 'pyinseq.tests.data.output_demultiplex_notrim.raw_data' as an importable package, however it is 2022-05-24T00:58:08,502 included in the distribution as "data". 2022-05-24T00:58:08,502 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,503 therefore is considered deprecated). 2022-05-24T00:58:08,503 Please make sure that 'pyinseq.tests.data.output_demultiplex_notrim.raw_data' is included as a package by using 2022-05-24T00:58:08,504 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,504 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,505 documentation page. 2022-05-24T00:58:08,506 !! 2022-05-24T00:58:08,506 check.warn(importable) 2022-05-24T00:58:08,507 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,508 ############################ 2022-05-24T00:58:08,508 # Package would be ignored # 2022-05-24T00:58:08,508 ############################ 2022-05-24T00:58:08,509 Python recognizes 'pyinseq.tests.data.output_genomeprep' as an importable package, however it is 2022-05-24T00:58:08,509 included in the distribution as "data". 2022-05-24T00:58:08,509 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,510 therefore is considered deprecated). 2022-05-24T00:58:08,511 Please make sure that 'pyinseq.tests.data.output_genomeprep' is included as a package by using 2022-05-24T00:58:08,511 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,512 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,512 documentation page. 2022-05-24T00:58:08,513 !! 2022-05-24T00:58:08,514 check.warn(importable) 2022-05-24T00:58:08,514 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,516 ############################ 2022-05-24T00:58:08,516 # Package would be ignored # 2022-05-24T00:58:08,516 ############################ 2022-05-24T00:58:08,517 Python recognizes 'pyinseq.tests.data.output_genomeprep.genome_lookup' as an importable package, however it is 2022-05-24T00:58:08,517 included in the distribution as "data". 2022-05-24T00:58:08,518 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,518 therefore is considered deprecated). 2022-05-24T00:58:08,519 Please make sure that 'pyinseq.tests.data.output_genomeprep.genome_lookup' is included as a package by using 2022-05-24T00:58:08,519 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,520 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,521 documentation page. 2022-05-24T00:58:08,522 !! 2022-05-24T00:58:08,523 check.warn(importable) 2022-05-24T00:58:08,523 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,524 ############################ 2022-05-24T00:58:08,525 # Package would be ignored # 2022-05-24T00:58:08,525 ############################ 2022-05-24T00:58:08,525 Python recognizes 'pyinseq.tests.data.output_genomeprep_gff' as an importable package, however it is 2022-05-24T00:58:08,525 included in the distribution as "data". 2022-05-24T00:58:08,526 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,526 therefore is considered deprecated). 2022-05-24T00:58:08,527 Please make sure that 'pyinseq.tests.data.output_genomeprep_gff' is included as a package by using 2022-05-24T00:58:08,527 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,528 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,528 documentation page. 2022-05-24T00:58:08,529 !! 2022-05-24T00:58:08,529 check.warn(importable) 2022-05-24T00:58:08,530 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:58:08,531 ############################ 2022-05-24T00:58:08,531 # Package would be ignored # 2022-05-24T00:58:08,531 ############################ 2022-05-24T00:58:08,532 Python recognizes 'pyinseq.tests.data.output_genomeprep_gff.genome_lookup' as an importable package, however it is 2022-05-24T00:58:08,532 included in the distribution as "data". 2022-05-24T00:58:08,532 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:58:08,533 therefore is considered deprecated). 2022-05-24T00:58:08,533 Please make sure that 'pyinseq.tests.data.output_genomeprep_gff.genome_lookup' is included as a package by using 2022-05-24T00:58:08,533 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:58:08,534 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:58:08,534 documentation page. 2022-05-24T00:58:08,535 !! 2022-05-24T00:58:08,536 check.warn(importable) 2022-05-24T00:58:08,536 copying pyinseq/VERSION -> build/lib/pyinseq 2022-05-24T00:58:08,536 creating build/lib/pyinseq/envs 2022-05-24T00:58:08,537 copying pyinseq/envs/bowtie.yaml -> build/lib/pyinseq/envs 2022-05-24T00:58:08,537 creating build/lib/pyinseq/tests/data 2022-05-24T00:58:08,537 creating build/lib/pyinseq/tests/data/additional 2022-05-24T00:58:08,538 copying pyinseq/tests/data/additional/sample01_01.txt -> build/lib/pyinseq/tests/data/additional 2022-05-24T00:58:08,538 copying pyinseq/tests/data/additional/sample01_02.txt -> build/lib/pyinseq/tests/data/additional 2022-05-24T00:58:08,538 creating build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,538 copying pyinseq/tests/data/input/ES114v2.gb -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,865 copying pyinseq/tests/data/input/demultiplex-config.yml -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,869 copying pyinseq/tests/data/input/example01.fastq -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,883 copying pyinseq/tests/data/input/example01.txt -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,886 copying pyinseq/tests/data/input/example02.txt -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,890 copying pyinseq/tests/data/input/example03.fastq -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,899 copying pyinseq/tests/data/input/example03.txt -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,903 copying pyinseq/tests/data/input/genomeprep-config.yml -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,906 copying pyinseq/tests/data/input/test-pyinseq-config.yml -> build/lib/pyinseq/tests/data/input 2022-05-24T00:58:08,910 creating build/lib/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:08,911 copying pyinseq/tests/data/output_demultiplex/E001_01_trimmed.fastq -> build/lib/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:08,917 copying pyinseq/tests/data/output_demultiplex/E001_02_trimmed.fastq -> build/lib/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:08,922 copying pyinseq/tests/data/output_demultiplex/log.txt -> build/lib/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:08,926 copying pyinseq/tests/data/output_demultiplex/samples.txt -> build/lib/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:08,930 copying pyinseq/tests/data/output_demultiplex/samples_info.yml -> build/lib/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:08,933 copying pyinseq/tests/data/output_demultiplex/summary_log.txt -> build/lib/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:08,937 creating build/lib/pyinseq/tests/data/output_demultiplex/raw_data 2022-05-24T00:58:08,939 copying pyinseq/tests/data/output_demultiplex/raw_data/E001_01.fastq -> build/lib/pyinseq/tests/data/output_demultiplex/raw_data 2022-05-24T00:58:08,945 copying pyinseq/tests/data/output_demultiplex/raw_data/E001_02.fastq -> build/lib/pyinseq/tests/data/output_demultiplex/raw_data 2022-05-24T00:58:08,951 copying pyinseq/tests/data/output_demultiplex/raw_data/_other.fastq -> build/lib/pyinseq/tests/data/output_demultiplex/raw_data 2022-05-24T00:58:08,955 creating build/lib/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:08,956 copying pyinseq/tests/data/output_demultiplex_notrim/log.txt -> build/lib/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:08,960 copying pyinseq/tests/data/output_demultiplex_notrim/samples.txt -> build/lib/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:08,964 copying pyinseq/tests/data/output_demultiplex_notrim/samples_info.yml -> build/lib/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:08,968 copying pyinseq/tests/data/output_demultiplex_notrim/summary_log.txt -> build/lib/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:08,972 creating build/lib/pyinseq/tests/data/output_demultiplex_notrim/raw_data 2022-05-24T00:58:08,973 copying pyinseq/tests/data/output_demultiplex_notrim/raw_data/E001_01.fastq -> build/lib/pyinseq/tests/data/output_demultiplex_notrim/raw_data 2022-05-24T00:58:08,979 copying pyinseq/tests/data/output_demultiplex_notrim/raw_data/E001_02.fastq -> build/lib/pyinseq/tests/data/output_demultiplex_notrim/raw_data 2022-05-24T00:58:08,986 copying pyinseq/tests/data/output_demultiplex_notrim/raw_data/_other.fastq -> build/lib/pyinseq/tests/data/output_demultiplex_notrim/raw_data 2022-05-24T00:58:08,990 creating build/lib/pyinseq/tests/data/output_genomeprep 2022-05-24T00:58:08,991 copying pyinseq/tests/data/output_genomeprep/log.txt -> build/lib/pyinseq/tests/data/output_genomeprep 2022-05-24T00:58:08,995 creating build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:08,996 copying pyinseq/tests/data/output_genomeprep/genome_lookup/genome.1.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:09,198 copying pyinseq/tests/data/output_genomeprep/genome_lookup/genome.2.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:09,233 copying pyinseq/tests/data/output_genomeprep/genome_lookup/genome.3.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:09,236 copying pyinseq/tests/data/output_genomeprep/genome_lookup/genome.4.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:09,303 copying pyinseq/tests/data/output_genomeprep/genome_lookup/genome.fna -> build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:09,520 copying pyinseq/tests/data/output_genomeprep/genome_lookup/genome.ftt -> build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:09,543 copying pyinseq/tests/data/output_genomeprep/genome_lookup/genome.rev.1.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:09,820 copying pyinseq/tests/data/output_genomeprep/genome_lookup/genome.rev.2.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:09,851 creating build/lib/pyinseq/tests/data/output_genomeprep_gff 2022-05-24T00:58:09,853 copying pyinseq/tests/data/output_genomeprep_gff/log.txt -> build/lib/pyinseq/tests/data/output_genomeprep_gff 2022-05-24T00:58:09,857 creating build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:09,858 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.1.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:10,138 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.2.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:10,170 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.3.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:10,174 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.4.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:10,233 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.fna -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:10,454 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.ftt -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:10,478 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.gff -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:10,709 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.rev.1.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:10,976 copying pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.rev.2.ebwt -> build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:11,002 creating build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,004 copying pyinseq/tests/data/output_pyinseq/E001_01_bowtie.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,009 copying pyinseq/tests/data/output_pyinseq/E001_01_genes.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,013 copying pyinseq/tests/data/output_pyinseq/E001_01_sites.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,017 copying pyinseq/tests/data/output_pyinseq/E001_01_trimmed.fastq -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,023 copying pyinseq/tests/data/output_pyinseq/E001_02_bowtie.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,029 copying pyinseq/tests/data/output_pyinseq/E001_02_genes.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,033 copying pyinseq/tests/data/output_pyinseq/E001_02_sites.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,036 copying pyinseq/tests/data/output_pyinseq/E001_02_trimmed.fastq -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,041 copying pyinseq/tests/data/output_pyinseq/log.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,045 copying pyinseq/tests/data/output_pyinseq/samples.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,048 copying pyinseq/tests/data/output_pyinseq/samples_info.yml -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,052 copying pyinseq/tests/data/output_pyinseq/summary_gene_table.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,075 copying pyinseq/tests/data/output_pyinseq/summary_log.txt -> build/lib/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:11,079 creating build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:11,080 copying pyinseq/tests/data/output_pyinseq/genome_lookup/genome.1.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:11,364 copying pyinseq/tests/data/output_pyinseq/genome_lookup/genome.2.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:11,401 copying pyinseq/tests/data/output_pyinseq/genome_lookup/genome.3.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:11,404 copying pyinseq/tests/data/output_pyinseq/genome_lookup/genome.4.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:11,463 copying pyinseq/tests/data/output_pyinseq/genome_lookup/genome.fna -> build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:11,701 copying pyinseq/tests/data/output_pyinseq/genome_lookup/genome.ftt -> build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:11,726 copying pyinseq/tests/data/output_pyinseq/genome_lookup/genome.rev.1.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:12,018 copying pyinseq/tests/data/output_pyinseq/genome_lookup/genome.rev.2.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:12,050 creating build/lib/pyinseq/tests/data/output_pyinseq/raw_data 2022-05-24T00:58:12,051 copying pyinseq/tests/data/output_pyinseq/raw_data/E001_01.fastq -> build/lib/pyinseq/tests/data/output_pyinseq/raw_data 2022-05-24T00:58:12,058 copying pyinseq/tests/data/output_pyinseq/raw_data/E001_02.fastq -> build/lib/pyinseq/tests/data/output_pyinseq/raw_data 2022-05-24T00:58:12,065 copying pyinseq/tests/data/output_pyinseq/raw_data/_other.fastq -> build/lib/pyinseq/tests/data/output_pyinseq/raw_data 2022-05-24T00:58:12,069 creating build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,071 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_bowtie.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,077 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_genes.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,082 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_sites.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,087 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_trimmed.fastq -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,092 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_bowtie.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,098 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_genes.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,102 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_sites.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,106 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_trimmed.fastq -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,112 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/log.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,116 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/samples.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,121 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/samples_info.yml -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,127 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/summary_gene_table.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,165 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/summary_log.txt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:12,170 creating build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:12,171 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.1.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:12,442 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.2.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:12,477 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.3.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:12,481 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.4.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:12,538 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.fna -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:12,768 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.ftt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:12,791 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.rev.1.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:13,064 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.rev.2.ebwt -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:13,095 creating build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data 2022-05-24T00:58:13,096 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/E001_01.fastq -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data 2022-05-24T00:58:13,104 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/E001_02.fastq -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data 2022-05-24T00:58:13,112 copying pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/_other.fastq -> build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data 2022-05-24T00:58:13,116 creating build/lib/pyinseq/tests/data/yml 2022-05-24T00:58:13,117 copying pyinseq/tests/data/yml/samples.yml -> build/lib/pyinseq/tests/data/yml 2022-05-24T00:58:13,121 creating build/lib/pyinseq/workflows/DemultiplexWorkflow 2022-05-24T00:58:13,122 copying pyinseq/workflows/DemultiplexWorkflow/Snakefile -> build/lib/pyinseq/workflows/DemultiplexWorkflow 2022-05-24T00:58:13,126 creating build/lib/pyinseq/workflows/GenomeprepWorkflow 2022-05-24T00:58:13,130 copying pyinseq/workflows/GenomeprepWorkflow/Snakefile -> build/lib/pyinseq/workflows/GenomeprepWorkflow 2022-05-24T00:58:13,135 creating build/lib/pyinseq/workflows/PyinseqWorkflow 2022-05-24T00:58:13,136 copying pyinseq/workflows/PyinseqWorkflow/Snakefile -> build/lib/pyinseq/workflows/PyinseqWorkflow 2022-05-24T00:58:13,146 running build_scripts 2022-05-24T00:58:13,148 creating build/scripts-3.7 2022-05-24T00:58:13,150 copying and adjusting scripts/pyinseq -> build/scripts-3.7 2022-05-24T00:58:13,153 changing mode of build/scripts-3.7/pyinseq from 644 to 755 2022-05-24T00:58:14,420 installing to build/bdist.linux-armv7l/wheel 2022-05-24T00:58:14,421 running install 2022-05-24T00:58:14,485 running install_lib 2022-05-24T00:58:15,121 creating build/bdist.linux-armv7l 2022-05-24T00:58:15,122 creating build/bdist.linux-armv7l/wheel 2022-05-24T00:58:15,125 creating build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:15,127 copying build/lib/pyinseq/process_mapping.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:15,132 copying build/lib/pyinseq/pipeline.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:15,136 copying build/lib/pyinseq/demultiplex.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:15,141 creating build/bdist.linux-armv7l/wheel/pyinseq/tests 2022-05-24T00:58:15,143 copying build/lib/pyinseq/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/pyinseq/tests 2022-05-24T00:58:15,148 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data 2022-05-24T00:58:15,151 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep 2022-05-24T00:58:15,153 copying build/lib/pyinseq/tests/data/output_genomeprep/log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep 2022-05-24T00:58:15,158 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:15,159 copying build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup/genome.fna -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:15,384 copying build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup/genome.4.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:15,438 copying build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup/genome.2.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:15,462 copying build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup/genome.3.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:15,465 copying build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup/genome.rev.2.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:15,497 copying build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup/genome.1.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:15,722 copying build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup/genome.ftt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:15,744 copying build/lib/pyinseq/tests/data/output_genomeprep/genome_lookup/genome.rev.1.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep/genome_lookup 2022-05-24T00:58:16,034 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,035 copying build/lib/pyinseq/tests/data/input/example02.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,039 copying build/lib/pyinseq/tests/data/input/ES114v2.gb -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,517 copying build/lib/pyinseq/tests/data/input/example01.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,525 copying build/lib/pyinseq/tests/data/input/demultiplex-config.yml -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,528 copying build/lib/pyinseq/tests/data/input/example03.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,538 copying build/lib/pyinseq/tests/data/input/example03.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,541 copying build/lib/pyinseq/tests/data/input/genomeprep-config.yml -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,544 copying build/lib/pyinseq/tests/data/input/test-pyinseq-config.yml -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,547 copying build/lib/pyinseq/tests/data/input/example01.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/input 2022-05-24T00:58:16,552 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,553 copying build/lib/pyinseq/tests/data/output_pyinseq/E001_02_bowtie.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,559 copying build/lib/pyinseq/tests/data/output_pyinseq/E001_01_bowtie.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,564 copying build/lib/pyinseq/tests/data/output_pyinseq/E001_02_genes.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,568 copying build/lib/pyinseq/tests/data/output_pyinseq/E001_01_trimmed.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,573 copying build/lib/pyinseq/tests/data/output_pyinseq/E001_02_trimmed.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,578 copying build/lib/pyinseq/tests/data/output_pyinseq/summary_gene_table.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,600 copying build/lib/pyinseq/tests/data/output_pyinseq/summary_log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,604 copying build/lib/pyinseq/tests/data/output_pyinseq/log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,607 copying build/lib/pyinseq/tests/data/output_pyinseq/samples_info.yml -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,610 copying build/lib/pyinseq/tests/data/output_pyinseq/E001_02_sites.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,615 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/raw_data 2022-05-24T00:58:16,616 copying build/lib/pyinseq/tests/data/output_pyinseq/raw_data/E001_01.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/raw_data 2022-05-24T00:58:16,622 copying build/lib/pyinseq/tests/data/output_pyinseq/raw_data/E001_02.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/raw_data 2022-05-24T00:58:16,628 copying build/lib/pyinseq/tests/data/output_pyinseq/raw_data/_other.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/raw_data 2022-05-24T00:58:16,631 copying build/lib/pyinseq/tests/data/output_pyinseq/E001_01_genes.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:16,635 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:16,637 copying build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup/genome.fna -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:16,852 copying build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup/genome.4.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:16,922 copying build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup/genome.2.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:16,951 copying build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup/genome.3.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:16,954 copying build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup/genome.rev.2.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:16,987 copying build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup/genome.1.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:17,257 copying build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup/genome.ftt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:17,285 copying build/lib/pyinseq/tests/data/output_pyinseq/genome_lookup/genome.rev.1.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq/genome_lookup 2022-05-24T00:58:17,529 copying build/lib/pyinseq/tests/data/output_pyinseq/samples.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:17,532 copying build/lib/pyinseq/tests/data/output_pyinseq/E001_01_sites.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq 2022-05-24T00:58:17,536 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff 2022-05-24T00:58:17,538 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff 2022-05-24T00:58:17,542 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:17,544 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.fna -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:17,783 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.4.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:17,840 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.2.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:17,868 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.gff -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:18,034 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.3.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:18,038 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.rev.2.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:18,069 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.1.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:18,334 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.ftt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:18,358 copying build/lib/pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.rev.1.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_genomeprep_gff/genome_lookup 2022-05-24T00:58:18,627 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:18,628 copying build/lib/pyinseq/tests/data/output_demultiplex_notrim/summary_log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:18,632 copying build/lib/pyinseq/tests/data/output_demultiplex_notrim/log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:18,636 copying build/lib/pyinseq/tests/data/output_demultiplex_notrim/samples_info.yml -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:18,641 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim/raw_data 2022-05-24T00:58:18,642 copying build/lib/pyinseq/tests/data/output_demultiplex_notrim/raw_data/E001_01.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim/raw_data 2022-05-24T00:58:18,651 copying build/lib/pyinseq/tests/data/output_demultiplex_notrim/raw_data/E001_02.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim/raw_data 2022-05-24T00:58:18,657 copying build/lib/pyinseq/tests/data/output_demultiplex_notrim/raw_data/_other.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim/raw_data 2022-05-24T00:58:18,661 copying build/lib/pyinseq/tests/data/output_demultiplex_notrim/samples.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex_notrim 2022-05-24T00:58:18,666 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,668 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_bowtie.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,673 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_bowtie.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,679 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_genes.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,682 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_trimmed.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,688 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_trimmed.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,693 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/summary_gene_table.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,712 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/summary_log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,716 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,719 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/samples_info.yml -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,722 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_sites.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,727 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data 2022-05-24T00:58:18,728 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/E001_01.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data 2022-05-24T00:58:18,734 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/E001_02.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data 2022-05-24T00:58:18,740 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/_other.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data 2022-05-24T00:58:18,743 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_genes.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:18,748 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:18,749 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.fna -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:18,936 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.4.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:18,991 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.2.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:19,024 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.3.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:19,027 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.rev.2.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:19,060 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.1.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:19,324 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.ftt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:19,348 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.rev.1.ebwt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup 2022-05-24T00:58:19,557 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/samples.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:19,561 copying build/lib/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_sites.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length 2022-05-24T00:58:19,565 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/yml 2022-05-24T00:58:19,568 copying build/lib/pyinseq/tests/data/yml/samples.yml -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/yml 2022-05-24T00:58:19,573 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:19,574 copying build/lib/pyinseq/tests/data/output_demultiplex/E001_01_trimmed.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:19,579 copying build/lib/pyinseq/tests/data/output_demultiplex/E001_02_trimmed.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:19,584 copying build/lib/pyinseq/tests/data/output_demultiplex/summary_log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:19,587 copying build/lib/pyinseq/tests/data/output_demultiplex/log.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:19,591 copying build/lib/pyinseq/tests/data/output_demultiplex/samples_info.yml -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:19,595 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex/raw_data 2022-05-24T00:58:19,596 copying build/lib/pyinseq/tests/data/output_demultiplex/raw_data/E001_01.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex/raw_data 2022-05-24T00:58:19,602 copying build/lib/pyinseq/tests/data/output_demultiplex/raw_data/E001_02.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex/raw_data 2022-05-24T00:58:19,609 copying build/lib/pyinseq/tests/data/output_demultiplex/raw_data/_other.fastq -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex/raw_data 2022-05-24T00:58:19,612 copying build/lib/pyinseq/tests/data/output_demultiplex/samples.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/output_demultiplex 2022-05-24T00:58:19,616 creating build/bdist.linux-armv7l/wheel/pyinseq/tests/data/additional 2022-05-24T00:58:19,618 copying build/lib/pyinseq/tests/data/additional/sample01_02.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/additional 2022-05-24T00:58:19,621 copying build/lib/pyinseq/tests/data/additional/sample01_01.txt -> build/bdist.linux-armv7l/wheel/pyinseq/tests/data/additional 2022-05-24T00:58:19,624 copying build/lib/pyinseq/tests/test_script.py -> build/bdist.linux-armv7l/wheel/pyinseq/tests 2022-05-24T00:58:19,628 copying build/lib/pyinseq/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pyinseq/tests 2022-05-24T00:58:19,631 copying build/lib/pyinseq/tests/test_functions.py -> build/bdist.linux-armv7l/wheel/pyinseq/tests 2022-05-24T00:58:19,634 copying build/lib/pyinseq/parsers.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,638 copying build/lib/pyinseq/analyze.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,642 copying build/lib/pyinseq/gbk_convert.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,648 creating build/bdist.linux-armv7l/wheel/pyinseq/envs 2022-05-24T00:58:19,649 copying build/lib/pyinseq/envs/bowtie.yaml -> build/bdist.linux-armv7l/wheel/pyinseq/envs 2022-05-24T00:58:19,653 copying build/lib/pyinseq/logger.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,656 copying build/lib/pyinseq/__init__.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,659 copying build/lib/pyinseq/map_reads.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,663 creating build/bdist.linux-armv7l/wheel/pyinseq/workflows 2022-05-24T00:58:19,666 creating build/bdist.linux-armv7l/wheel/pyinseq/workflows/DemultiplexWorkflow 2022-05-24T00:58:19,668 copying build/lib/pyinseq/workflows/DemultiplexWorkflow/Snakefile -> build/bdist.linux-armv7l/wheel/pyinseq/workflows/DemultiplexWorkflow 2022-05-24T00:58:19,672 creating build/bdist.linux-armv7l/wheel/pyinseq/workflows/PyinseqWorkflow 2022-05-24T00:58:19,674 copying build/lib/pyinseq/workflows/PyinseqWorkflow/Snakefile -> build/bdist.linux-armv7l/wheel/pyinseq/workflows/PyinseqWorkflow 2022-05-24T00:58:19,678 copying build/lib/pyinseq/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/pyinseq/workflows 2022-05-24T00:58:19,682 creating build/bdist.linux-armv7l/wheel/pyinseq/workflows/GenomeprepWorkflow 2022-05-24T00:58:19,683 copying build/lib/pyinseq/workflows/GenomeprepWorkflow/Snakefile -> build/bdist.linux-armv7l/wheel/pyinseq/workflows/GenomeprepWorkflow 2022-05-24T00:58:19,687 copying build/lib/pyinseq/config.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,690 copying build/lib/pyinseq/utils.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,694 copying build/lib/pyinseq/settings.py -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,698 copying build/lib/pyinseq/VERSION -> build/bdist.linux-armv7l/wheel/pyinseq 2022-05-24T00:58:19,701 running install_egg_info 2022-05-24T00:58:20,342 Copying pyinseq.egg-info to build/bdist.linux-armv7l/wheel/pyinseq-0.3.2-py3.7.egg-info 2022-05-24T00:58:20,369 running install_scripts 2022-05-24T00:58:20,484 creating build/bdist.linux-armv7l/wheel/pyinseq-0.3.2.data 2022-05-24T00:58:20,484 creating build/bdist.linux-armv7l/wheel/pyinseq-0.3.2.data/scripts 2022-05-24T00:58:20,486 copying build/scripts-3.7/pyinseq -> build/bdist.linux-armv7l/wheel/pyinseq-0.3.2.data/scripts 2022-05-24T00:58:20,489 changing mode of build/bdist.linux-armv7l/wheel/pyinseq-0.3.2.data/scripts/pyinseq to 755 2022-05-24T00:58:20,572 adding license file "LICENSE.md" (matched pattern "LICENSE.md") 2022-05-24T00:58:20,578 creating build/bdist.linux-armv7l/wheel/pyinseq-0.3.2.dist-info/WHEEL 2022-05-24T00:58:20,583 creating '/tmp/pip-wheel-1dmmd3x8/tmpjeyux3y3/pyinseq-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-05-24T00:58:20,587 adding 'pyinseq/VERSION' 2022-05-24T00:58:20,590 adding 'pyinseq/__init__.py' 2022-05-24T00:58:20,593 adding 'pyinseq/analyze.py' 2022-05-24T00:58:20,595 adding 'pyinseq/config.py' 2022-05-24T00:58:20,598 adding 'pyinseq/demultiplex.py' 2022-05-24T00:58:20,602 adding 'pyinseq/gbk_convert.py' 2022-05-24T00:58:20,605 adding 'pyinseq/logger.py' 2022-05-24T00:58:20,608 adding 'pyinseq/map_reads.py' 2022-05-24T00:58:20,611 adding 'pyinseq/parsers.py' 2022-05-24T00:58:20,613 adding 'pyinseq/pipeline.py' 2022-05-24T00:58:20,618 adding 'pyinseq/process_mapping.py' 2022-05-24T00:58:20,622 adding 'pyinseq/settings.py' 2022-05-24T00:58:20,625 adding 'pyinseq/utils.py' 2022-05-24T00:58:20,629 adding 'pyinseq/envs/bowtie.yaml' 2022-05-24T00:58:20,632 adding 'pyinseq/tests/__init__.py' 2022-05-24T00:58:20,634 adding 'pyinseq/tests/test_functions.py' 2022-05-24T00:58:20,637 adding 'pyinseq/tests/test_script.py' 2022-05-24T00:58:20,640 adding 'pyinseq/tests/test_utils.py' 2022-05-24T00:58:20,645 adding 'pyinseq/tests/data/additional/sample01_01.txt' 2022-05-24T00:58:20,647 adding 'pyinseq/tests/data/additional/sample01_02.txt' 2022-05-24T00:58:29,981 adding 'pyinseq/tests/data/input/ES114v2.gb' 2022-05-24T00:58:30,176 adding 'pyinseq/tests/data/input/demultiplex-config.yml' 2022-05-24T00:58:30,183 adding 'pyinseq/tests/data/input/example01.fastq' 2022-05-24T00:58:30,187 adding 'pyinseq/tests/data/input/example01.txt' 2022-05-24T00:58:30,190 adding 'pyinseq/tests/data/input/example02.txt' 2022-05-24T00:58:30,198 adding 'pyinseq/tests/data/input/example03.fastq' 2022-05-24T00:58:30,203 adding 'pyinseq/tests/data/input/example03.txt' 2022-05-24T00:58:30,206 adding 'pyinseq/tests/data/input/genomeprep-config.yml' 2022-05-24T00:58:30,209 adding 'pyinseq/tests/data/input/test-pyinseq-config.yml' 2022-05-24T00:58:30,213 adding 'pyinseq/tests/data/output_demultiplex/E001_01_trimmed.fastq' 2022-05-24T00:58:30,217 adding 'pyinseq/tests/data/output_demultiplex/E001_02_trimmed.fastq' 2022-05-24T00:58:30,220 adding 'pyinseq/tests/data/output_demultiplex/log.txt' 2022-05-24T00:58:30,222 adding 'pyinseq/tests/data/output_demultiplex/samples.txt' 2022-05-24T00:58:30,224 adding 'pyinseq/tests/data/output_demultiplex/samples_info.yml' 2022-05-24T00:58:30,227 adding 'pyinseq/tests/data/output_demultiplex/summary_log.txt' 2022-05-24T00:58:30,232 adding 'pyinseq/tests/data/output_demultiplex/raw_data/E001_01.fastq' 2022-05-24T00:58:30,237 adding 'pyinseq/tests/data/output_demultiplex/raw_data/E001_02.fastq' 2022-05-24T00:58:30,240 adding 'pyinseq/tests/data/output_demultiplex/raw_data/_other.fastq' 2022-05-24T00:58:30,244 adding 'pyinseq/tests/data/output_demultiplex_notrim/log.txt' 2022-05-24T00:58:30,246 adding 'pyinseq/tests/data/output_demultiplex_notrim/samples.txt' 2022-05-24T00:58:30,249 adding 'pyinseq/tests/data/output_demultiplex_notrim/samples_info.yml' 2022-05-24T00:58:30,251 adding 'pyinseq/tests/data/output_demultiplex_notrim/summary_log.txt' 2022-05-24T00:58:30,256 adding 'pyinseq/tests/data/output_demultiplex_notrim/raw_data/E001_01.fastq' 2022-05-24T00:58:30,261 adding 'pyinseq/tests/data/output_demultiplex_notrim/raw_data/E001_02.fastq' 2022-05-24T00:58:30,264 adding 'pyinseq/tests/data/output_demultiplex_notrim/raw_data/_other.fastq' 2022-05-24T00:58:30,268 adding 'pyinseq/tests/data/output_genomeprep/log.txt' 2022-05-24T00:58:33,267 adding 'pyinseq/tests/data/output_genomeprep/genome_lookup/genome.1.ebwt' 2022-05-24T00:58:33,623 adding 'pyinseq/tests/data/output_genomeprep/genome_lookup/genome.2.ebwt' 2022-05-24T00:58:33,636 adding 'pyinseq/tests/data/output_genomeprep/genome_lookup/genome.3.ebwt' 2022-05-24T00:58:33,978 adding 'pyinseq/tests/data/output_genomeprep/genome_lookup/genome.4.ebwt' 2022-05-24T00:58:39,884 adding 'pyinseq/tests/data/output_genomeprep/genome_lookup/genome.fna' 2022-05-24T00:58:40,103 adding 'pyinseq/tests/data/output_genomeprep/genome_lookup/genome.ftt' 2022-05-24T00:58:43,092 adding 'pyinseq/tests/data/output_genomeprep/genome_lookup/genome.rev.1.ebwt' 2022-05-24T00:58:43,453 adding 'pyinseq/tests/data/output_genomeprep/genome_lookup/genome.rev.2.ebwt' 2022-05-24T00:58:43,467 adding 'pyinseq/tests/data/output_genomeprep_gff/log.txt' 2022-05-24T00:58:46,463 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.1.ebwt' 2022-05-24T00:58:46,819 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.2.ebwt' 2022-05-24T00:58:46,832 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.3.ebwt' 2022-05-24T00:58:47,174 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.4.ebwt' 2022-05-24T00:58:53,458 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.fna' 2022-05-24T00:58:53,678 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.ftt' 2022-05-24T00:58:59,625 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.gff' 2022-05-24T00:59:02,707 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.rev.1.ebwt' 2022-05-24T00:59:03,063 adding 'pyinseq/tests/data/output_genomeprep_gff/genome_lookup/genome.rev.2.ebwt' 2022-05-24T00:59:03,079 adding 'pyinseq/tests/data/output_pyinseq/E001_01_bowtie.txt' 2022-05-24T00:59:03,082 adding 'pyinseq/tests/data/output_pyinseq/E001_01_genes.txt' 2022-05-24T00:59:03,084 adding 'pyinseq/tests/data/output_pyinseq/E001_01_sites.txt' 2022-05-24T00:59:03,088 adding 'pyinseq/tests/data/output_pyinseq/E001_01_trimmed.fastq' 2022-05-24T00:59:03,091 adding 'pyinseq/tests/data/output_pyinseq/E001_02_bowtie.txt' 2022-05-24T00:59:03,094 adding 'pyinseq/tests/data/output_pyinseq/E001_02_genes.txt' 2022-05-24T00:59:03,096 adding 'pyinseq/tests/data/output_pyinseq/E001_02_sites.txt' 2022-05-24T00:59:03,100 adding 'pyinseq/tests/data/output_pyinseq/E001_02_trimmed.fastq' 2022-05-24T00:59:03,103 adding 'pyinseq/tests/data/output_pyinseq/log.txt' 2022-05-24T00:59:03,105 adding 'pyinseq/tests/data/output_pyinseq/samples.txt' 2022-05-24T00:59:03,107 adding 'pyinseq/tests/data/output_pyinseq/samples_info.yml' 2022-05-24T00:59:03,242 adding 'pyinseq/tests/data/output_pyinseq/summary_gene_table.txt' 2022-05-24T00:59:03,252 adding 'pyinseq/tests/data/output_pyinseq/summary_log.txt' 2022-05-24T00:59:06,253 adding 'pyinseq/tests/data/output_pyinseq/genome_lookup/genome.1.ebwt' 2022-05-24T00:59:06,605 adding 'pyinseq/tests/data/output_pyinseq/genome_lookup/genome.2.ebwt' 2022-05-24T00:59:06,618 adding 'pyinseq/tests/data/output_pyinseq/genome_lookup/genome.3.ebwt' 2022-05-24T00:59:06,959 adding 'pyinseq/tests/data/output_pyinseq/genome_lookup/genome.4.ebwt' 2022-05-24T00:59:12,865 adding 'pyinseq/tests/data/output_pyinseq/genome_lookup/genome.fna' 2022-05-24T00:59:13,083 adding 'pyinseq/tests/data/output_pyinseq/genome_lookup/genome.ftt' 2022-05-24T00:59:16,077 adding 'pyinseq/tests/data/output_pyinseq/genome_lookup/genome.rev.1.ebwt' 2022-05-24T00:59:16,430 adding 'pyinseq/tests/data/output_pyinseq/genome_lookup/genome.rev.2.ebwt' 2022-05-24T00:59:16,447 adding 'pyinseq/tests/data/output_pyinseq/raw_data/E001_01.fastq' 2022-05-24T00:59:16,451 adding 'pyinseq/tests/data/output_pyinseq/raw_data/E001_02.fastq' 2022-05-24T00:59:16,455 adding 'pyinseq/tests/data/output_pyinseq/raw_data/_other.fastq' 2022-05-24T00:59:16,460 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_bowtie.txt' 2022-05-24T00:59:16,463 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_genes.txt' 2022-05-24T00:59:16,465 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_sites.txt' 2022-05-24T00:59:16,468 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_01_trimmed.fastq' 2022-05-24T00:59:16,472 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_bowtie.txt' 2022-05-24T00:59:16,475 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_genes.txt' 2022-05-24T00:59:16,477 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_sites.txt' 2022-05-24T00:59:16,481 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/E001_02_trimmed.fastq' 2022-05-24T00:59:16,484 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/log.txt' 2022-05-24T00:59:16,486 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/samples.txt' 2022-05-24T00:59:16,488 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/samples_info.yml' 2022-05-24T00:59:16,619 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/summary_gene_table.txt' 2022-05-24T00:59:16,629 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/summary_log.txt' 2022-05-24T00:59:19,945 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.1.ebwt' 2022-05-24T00:59:20,298 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.2.ebwt' 2022-05-24T00:59:20,311 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.3.ebwt' 2022-05-24T00:59:20,649 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.4.ebwt' 2022-05-24T00:59:26,626 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.fna' 2022-05-24T00:59:26,843 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.ftt' 2022-05-24T00:59:29,832 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.rev.1.ebwt' 2022-05-24T00:59:30,186 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/genome_lookup/genome.rev.2.ebwt' 2022-05-24T00:59:30,202 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/E001_01.fastq' 2022-05-24T00:59:30,207 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/E001_02.fastq' 2022-05-24T00:59:30,210 adding 'pyinseq/tests/data/output_pyinseq_unique_transposon_barcode_length/raw_data/_other.fastq' 2022-05-24T00:59:30,214 adding 'pyinseq/tests/data/yml/samples.yml' 2022-05-24T00:59:30,217 adding 'pyinseq/workflows/__init__.py' 2022-05-24T00:59:30,221 adding 'pyinseq/workflows/DemultiplexWorkflow/Snakefile' 2022-05-24T00:59:30,224 adding 'pyinseq/workflows/GenomeprepWorkflow/Snakefile' 2022-05-24T00:59:30,228 adding 'pyinseq/workflows/PyinseqWorkflow/Snakefile' 2022-05-24T00:59:30,233 adding 'pyinseq-0.3.2.data/scripts/pyinseq' 2022-05-24T00:59:30,238 adding 'pyinseq-0.3.2.dist-info/LICENSE.md' 2022-05-24T00:59:30,244 adding 'pyinseq-0.3.2.dist-info/METADATA' 2022-05-24T00:59:30,246 adding 'pyinseq-0.3.2.dist-info/WHEEL' 2022-05-24T00:59:30,248 adding 'pyinseq-0.3.2.dist-info/top_level.txt' 2022-05-24T00:59:30,253 adding 'pyinseq-0.3.2.dist-info/RECORD' 2022-05-24T00:59:30,414 removing build/bdist.linux-armv7l/wheel 2022-05-24T00:59:30,559 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,561 ############################ 2022-05-24T00:59:30,561 # Package would be ignored # 2022-05-24T00:59:30,562 ############################ 2022-05-24T00:59:30,562 Python recognizes 'pyinseq.tests.data.output_pyinseq' as an importable package, however it is 2022-05-24T00:59:30,563 included in the distribution as "data". 2022-05-24T00:59:30,563 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,564 therefore is considered deprecated). 2022-05-24T00:59:30,565 Please make sure that 'pyinseq.tests.data.output_pyinseq' is included as a package by using 2022-05-24T00:59:30,565 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,566 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,566 documentation page. 2022-05-24T00:59:30,568 !! 2022-05-24T00:59:30,569 check.warn(importable) 2022-05-24T00:59:30,569 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,571 ############################ 2022-05-24T00:59:30,571 # Package would be ignored # 2022-05-24T00:59:30,571 ############################ 2022-05-24T00:59:30,572 Python recognizes 'pyinseq.tests.data.output_pyinseq.genome_lookup' as an importable package, however it is 2022-05-24T00:59:30,572 included in the distribution as "data". 2022-05-24T00:59:30,573 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,573 therefore is considered deprecated). 2022-05-24T00:59:30,574 Please make sure that 'pyinseq.tests.data.output_pyinseq.genome_lookup' is included as a package by using 2022-05-24T00:59:30,574 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,575 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,575 documentation page. 2022-05-24T00:59:30,577 !! 2022-05-24T00:59:30,577 check.warn(importable) 2022-05-24T00:59:30,578 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,579 ############################ 2022-05-24T00:59:30,579 # Package would be ignored # 2022-05-24T00:59:30,580 ############################ 2022-05-24T00:59:30,580 Python recognizes 'pyinseq.tests.data.output_pyinseq.raw_data' as an importable package, however it is 2022-05-24T00:59:30,581 included in the distribution as "data". 2022-05-24T00:59:30,581 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,581 therefore is considered deprecated). 2022-05-24T00:59:30,582 Please make sure that 'pyinseq.tests.data.output_pyinseq.raw_data' is included as a package by using 2022-05-24T00:59:30,583 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,583 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,584 documentation page. 2022-05-24T00:59:30,585 !! 2022-05-24T00:59:30,586 check.warn(importable) 2022-05-24T00:59:30,586 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,588 ############################ 2022-05-24T00:59:30,588 # Package would be ignored # 2022-05-24T00:59:30,588 ############################ 2022-05-24T00:59:30,589 Python recognizes 'pyinseq.tests.data.output_pyinseq_unique_transposon_barcode_length' as an importable package, however it is 2022-05-24T00:59:30,589 included in the distribution as "data". 2022-05-24T00:59:30,590 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,590 therefore is considered deprecated). 2022-05-24T00:59:30,591 Please make sure that 'pyinseq.tests.data.output_pyinseq_unique_transposon_barcode_length' is included as a package by using 2022-05-24T00:59:30,591 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,592 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,592 documentation page. 2022-05-24T00:59:30,593 !! 2022-05-24T00:59:30,594 check.warn(importable) 2022-05-24T00:59:30,595 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,596 ############################ 2022-05-24T00:59:30,596 # Package would be ignored # 2022-05-24T00:59:30,596 ############################ 2022-05-24T00:59:30,597 Python recognizes 'pyinseq.tests.data.output_pyinseq_unique_transposon_barcode_length.genome_lookup' as an importable package, however it is 2022-05-24T00:59:30,597 included in the distribution as "data". 2022-05-24T00:59:30,598 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,598 therefore is considered deprecated). 2022-05-24T00:59:30,599 Please make sure that 'pyinseq.tests.data.output_pyinseq_unique_transposon_barcode_length.genome_lookup' is included as a package by using 2022-05-24T00:59:30,599 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,600 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,601 documentation page. 2022-05-24T00:59:30,602 !! 2022-05-24T00:59:30,602 check.warn(importable) 2022-05-24T00:59:30,603 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,604 ############################ 2022-05-24T00:59:30,605 # Package would be ignored # 2022-05-24T00:59:30,605 ############################ 2022-05-24T00:59:30,606 Python recognizes 'pyinseq.tests.data.output_pyinseq_unique_transposon_barcode_length.raw_data' as an importable package, however it is 2022-05-24T00:59:30,606 included in the distribution as "data". 2022-05-24T00:59:30,607 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,607 therefore is considered deprecated). 2022-05-24T00:59:30,608 Please make sure that 'pyinseq.tests.data.output_pyinseq_unique_transposon_barcode_length.raw_data' is included as a package by using 2022-05-24T00:59:30,608 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,609 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,609 documentation page. 2022-05-24T00:59:30,611 !! 2022-05-24T00:59:30,611 check.warn(importable) 2022-05-24T00:59:30,612 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,613 ############################ 2022-05-24T00:59:30,613 # Package would be ignored # 2022-05-24T00:59:30,614 ############################ 2022-05-24T00:59:30,614 Python recognizes 'pyinseq.tests.data.yml' as an importable package, however it is 2022-05-24T00:59:30,614 included in the distribution as "data". 2022-05-24T00:59:30,615 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,615 therefore is considered deprecated). 2022-05-24T00:59:30,616 Please make sure that 'pyinseq.tests.data.yml' is included as a package by using 2022-05-24T00:59:30,616 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,617 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,617 documentation page. 2022-05-24T00:59:30,618 !! 2022-05-24T00:59:30,619 check.warn(importable) 2022-05-24T00:59:30,619 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,620 ############################ 2022-05-24T00:59:30,621 # Package would be ignored # 2022-05-24T00:59:30,621 ############################ 2022-05-24T00:59:30,621 Python recognizes 'pyinseq.workflows.DemultiplexWorkflow' as an importable package, however it is 2022-05-24T00:59:30,622 included in the distribution as "data". 2022-05-24T00:59:30,622 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,622 therefore is considered deprecated). 2022-05-24T00:59:30,623 Please make sure that 'pyinseq.workflows.DemultiplexWorkflow' is included as a package by using 2022-05-24T00:59:30,623 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,624 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,625 documentation page. 2022-05-24T00:59:30,626 !! 2022-05-24T00:59:30,627 check.warn(importable) 2022-05-24T00:59:30,628 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,629 ############################ 2022-05-24T00:59:30,629 # Package would be ignored # 2022-05-24T00:59:30,630 ############################ 2022-05-24T00:59:30,630 Python recognizes 'pyinseq.workflows.GenomeprepWorkflow' as an importable package, however it is 2022-05-24T00:59:30,631 included in the distribution as "data". 2022-05-24T00:59:30,631 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,632 therefore is considered deprecated). 2022-05-24T00:59:30,632 Please make sure that 'pyinseq.workflows.GenomeprepWorkflow' is included as a package by using 2022-05-24T00:59:30,633 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,634 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,634 documentation page. 2022-05-24T00:59:30,635 !! 2022-05-24T00:59:30,636 check.warn(importable) 2022-05-24T00:59:30,636 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-05-24T00:59:30,638 ############################ 2022-05-24T00:59:30,638 # Package would be ignored # 2022-05-24T00:59:30,638 ############################ 2022-05-24T00:59:30,639 Python recognizes 'pyinseq.workflows.PyinseqWorkflow' as an importable package, however it is 2022-05-24T00:59:30,639 included in the distribution as "data". 2022-05-24T00:59:30,639 This behavior is likely to change in future versions of setuptools (and 2022-05-24T00:59:30,640 therefore is considered deprecated). 2022-05-24T00:59:30,641 Please make sure that 'pyinseq.workflows.PyinseqWorkflow' is included as a package by using 2022-05-24T00:59:30,641 setuptools' `packages` configuration field or the proper discovery methods. 2022-05-24T00:59:30,642 You can read more about "package discovery" and "data files" on setuptools 2022-05-24T00:59:30,642 documentation page. 2022-05-24T00:59:30,644 !! 2022-05-24T00:59:30,645 check.warn(importable) 2022-05-24T00:59:30,825 Building wheel for pyinseq (pyproject.toml): finished with status 'done' 2022-05-24T00:59:33,021 Created wheel for pyinseq: filename=pyinseq-0.3.2-py3-none-any.whl size=37522138 sha256=9c3cfe0343eb24ab35ceb90b456ab1d9c04de11f5264c335fa081b30c45a7187 2022-05-24T00:59:33,023 Stored in directory: /tmp/pip-ephem-wheel-cache-uqgiiy0k/wheels/9f/ba/b0/1a3f91e3ff2fccd8895a274d5b8270def7a037af628fb838c7 2022-05-24T00:59:33,103 Successfully built pyinseq 2022-05-24T00:59:35,917 Removed build tracker: '/tmp/pip-build-tracker-sslng6ni'