2022-05-24T18:28:00,746 Created temporary directory: /tmp/pip-ephem-wheel-cache-dv1ph2gj 2022-05-24T18:28:00,752 Created temporary directory: /tmp/pip-build-tracker-m6ibqp2s 2022-05-24T18:28:00,752 Initialized build tracking at /tmp/pip-build-tracker-m6ibqp2s 2022-05-24T18:28:00,753 Created build tracker: /tmp/pip-build-tracker-m6ibqp2s 2022-05-24T18:28:00,753 Entered build tracker: /tmp/pip-build-tracker-m6ibqp2s 2022-05-24T18:28:00,754 Created temporary directory: /tmp/pip-wheel-nai_4i70 2022-05-24T18:28:00,825 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-24T18:28:00,833 2 location(s) to search for versions of indelpost: 2022-05-24T18:28:00,833 * https://pypi.org/simple/indelpost/ 2022-05-24T18:28:00,833 * https://www.piwheels.org/simple/indelpost/ 2022-05-24T18:28:00,835 Fetching project page and analyzing links: https://pypi.org/simple/indelpost/ 2022-05-24T18:28:00,836 Getting page https://pypi.org/simple/indelpost/ 2022-05-24T18:28:00,839 Found index url https://pypi.org/simple 2022-05-24T18:28:00,970 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/2c/1d/2aaf490785fed09605d1194a93f0d4c6693e0700fe2fcd9185b1aac27ef2/indelpost-0.0.1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=22dd2ce3f806b04ebc5c5587736e8ee360d798fdf01d28711357185cf1703961 (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,971 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/54/c1/a67da73389badb8221981f0fb0fbbbfdb7342ab8f85f905d6698c6347f6b/indelpost-0.0.2-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=90d86337c0008370f0c2752bfd1dcf1dda8bb34475cac842ed9cbb3dc0073027 (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,971 Found link https://files.pythonhosted.org/packages/de/7b/8b8e90a4883daa231b77b3b20d07430734622d3dabe47f8d341f6b9ebb49/indelpost-0.0.2.tar.gz#sha256=d2cdebe02749d55eff6a4e0fbc455ac90d8e9ddc730ff5baa14b6743931797d6 (from https://pypi.org/simple/indelpost/), version: 0.0.2 2022-05-24T18:28:00,972 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/dc/d5/5e20c3069e99a36caf23bbf9ac6e0f654a23178bb7346541676872fa9bbe/indelpost-0.0.3-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=d401a2411fd0f40975c5d11ddaa1100eeb04e60f44de5fb703c8b261c5dd14b0 (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,973 Found link https://files.pythonhosted.org/packages/8d/6a/e12e7e15eeb48b35ae38b9382b0e3b8853fe62c2147f13c7152c1285efe0/indelpost-0.0.3.tar.gz#sha256=15b1108f2a9382c2e0133d585e96e4f3a109de9c14ec91df7910637bb882e8cf (from https://pypi.org/simple/indelpost/), version: 0.0.3 2022-05-24T18:28:00,973 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/bf/82/58a1ee8cb0385c502afceb21d718179cbe56dd2318656de1c11f1d16af8b/indelpost-0.0.4-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=10782ed395a864d0e4d9d7bdb6b047e0d919eb6eb19b2eb38536c083aee6010e (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,974 Found link https://files.pythonhosted.org/packages/ef/04/6d459daa1e4c992bc65ee1bedd624a7c061e7026df01e2f835591a205a54/indelpost-0.0.4.tar.gz#sha256=81a6d7220973f36e1ed0b7f45a9602780b153e2c82769e77faab517ac5874095 (from https://pypi.org/simple/indelpost/), version: 0.0.4 2022-05-24T18:28:00,975 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/fc/60/d2dc04e1503d76a934265af72306fe6883bbeab466e30e4104e04565da6f/indelpost-0.0.5-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=36390346ce23d74882e6017c14789aa661b165579dc63442b62d08b84c219ca5 (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,975 Found link https://files.pythonhosted.org/packages/59/c4/b639f75fe326c6712d462f6154ea6047c4774a661f00c2551fff984db194/indelpost-0.0.5.tar.gz#sha256=43d39835821c9564eed9148c529fd9833db6b3042cf259ffc69398e25cd86768 (from https://pypi.org/simple/indelpost/), version: 0.0.5 2022-05-24T18:28:00,976 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/f1/6e/26ec6199f8df542adc339cf3caebfdcfd5cdf438591aa6e7b3881b2d9682/indelpost-0.0.6-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=29b3d6634007ef21c4c88f72e1ea5594e9e7b1d04f084dfdcbc70b749394aed6 (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,976 Found link https://files.pythonhosted.org/packages/82/50/d5d04f27a9317f5c24850b2388713c240a6c07fdb5f9a3cbc5b3aef6032c/indelpost-0.0.6.tar.gz#sha256=ea9a534f8f0a7dcec35a004d1f42632fe245d28d74914f226eeab262dbf84410 (from https://pypi.org/simple/indelpost/), version: 0.0.6 2022-05-24T18:28:00,977 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/ea/da/03d68b7bb51d84b8c88303fc6c7554db09bb3ec1fc6e01db8445b936bd6c/indelpost-0.0.7-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=aa1931e5f50c8d9b66f8dc512e71d923f2eef1c4c86d5c672e4d16d22334f66d (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,978 Found link https://files.pythonhosted.org/packages/97/55/92a64a3f1d8bbe3b3d326f32aeb87516e3c461ce8f44a4d09cc10de90077/indelpost-0.0.7.tar.gz#sha256=bb16d11fe858c0a3d4c8e6046961657622a4c7eaa0559bb62629eeef81a1b8f9 (from https://pypi.org/simple/indelpost/), version: 0.0.7 2022-05-24T18:28:00,978 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/33/67/ae5323d7d9c609a60fb4d425b0d8ba5299453b63b9125f35e3743636bf12/indelpost-0.1.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=f42eec0a7acc7840c14d9d3ee5c011bf1036899673ed7905ca919bfd134bd7fb (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,979 Found link https://files.pythonhosted.org/packages/ad/13/3367cfe66b9dee3034ca7f4188d61a55e7cf1817558dd1322313ea693384/indelpost-0.1.0.tar.gz#sha256=513a086552e176415620c57b048110028b926d18ae225ff3b5b6a2a826224f52 (from https://pypi.org/simple/indelpost/), version: 0.1.0 2022-05-24T18:28:00,980 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/c7/09/70c352d9d6f3bcdc410810d35d44cf66493f66c07ac996c07da53d5a6375/indelpost-0.1.2-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=b9bde1f02a9c2d379aca928fdb302d39d668205e881dca8bd3568126656cc14a (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,980 Found link https://files.pythonhosted.org/packages/28/7f/62eb40e0bdf79cc0b56bd12c4fa5598e13bbf140f44080c842d5284acc6f/indelpost-0.1.2.tar.gz#sha256=b2572871b17524491d11c82512c891c8ced26d7d4a04d5d41cf03f115c447426 (from https://pypi.org/simple/indelpost/), version: 0.1.2 2022-05-24T18:28:00,981 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/7f/a2/1341f6e0b449d1fa03df8b323c79c236ec134ed4b98808fd0e9b64083394/indelpost-0.1.3-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=fe074207ed3cfb7227e4c3eb7248ed0e790e9a6a6906dd93b48aecedeed88b6f (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,982 Found link https://files.pythonhosted.org/packages/bf/c0/fa6d273124ec3d739322db2f82410b21cfa06961e8ad74a75b4049780489/indelpost-0.1.3.tar.gz#sha256=269bce4bf476bf05c5ab3c2e785932ae4ff75524ad88215e1676ada179aa85c9 (from https://pypi.org/simple/indelpost/), version: 0.1.3 2022-05-24T18:28:00,982 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/84/b8/2960198caddb27814e86ee54022a85834c9315e08250df8210108e608832/indelpost-0.1.4-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=3d8ea641a270815ff18c4a86b00ff00489e1b1cdaced1ca61ca9cae797c4aeac (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,983 Found link https://files.pythonhosted.org/packages/8b/94/e98ddc3e8f24f3a3ac5f5ef94d4f2db0346e0a14e5cdbbdd3e1dd4a01e98/indelpost-0.1.4.tar.gz#sha256=647e20e4b777967edb981e06b6b477000112169c0a0cac15243c91869852eaf8 (from https://pypi.org/simple/indelpost/), version: 0.1.4 2022-05-24T18:28:00,983 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/5b/ad/d974f31584f0e4fede49aa915151215142af3c2a96be0169464b2d0b0948/indelpost-0.1.5-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=511b753d15748e6648d223112afddeacc040308f9bbe932e67c707c3f95ebafc (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,984 Found link https://files.pythonhosted.org/packages/1f/31/fa53ce469a6aea3029caa39b715d7eec5378b466038591b954e0f356e907/indelpost-0.1.5.tar.gz#sha256=546896754e075f0abb5bcea2d5e23039c7b3de265178a5c632955f7c53ec8a38 (from https://pypi.org/simple/indelpost/), version: 0.1.5 2022-05-24T18:28:00,985 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/46/f9/706bf8cae759e72d9da70746ef37ea6b72b746786582fc16aafe0a140d68/indelpost-0.1.6-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=e60f38ca5b74b4098685dbdfb338f4e4186ff694fd5962c3449e2d093c600c09 (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,985 Found link https://files.pythonhosted.org/packages/81/75/62103326be8bd02fc0f7d11a3f20693fcb106f39e8c0c09204ec662d9c96/indelpost-0.1.6.tar.gz#sha256=ee81455d5cc6d8bb3c82e4c4ff14e5401b2c2f142a09536d6fa9b57ac95f0685 (from https://pypi.org/simple/indelpost/), version: 0.1.6 2022-05-24T18:28:00,986 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/b1/2d/d0e5613b6228ecaadc8426369234d2f2f845ef4b0efc37eb6a9334154eb6/indelpost-0.1.7-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=3426f3149cda97584ccd7b6e87bf8604bd026f7cb71d7153ab03a928773933f2 (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,986 Found link https://files.pythonhosted.org/packages/1d/49/ad1dceecb2fc74d484b251f5065c94e5206a53613d3c24384c61201d15b3/indelpost-0.1.7.tar.gz#sha256=842dffbb6eeeb4c1f6c9cc0ea18d5a97e2ea75c3571f925e984d2411c8c4624a (from https://pypi.org/simple/indelpost/), version: 0.1.7 2022-05-24T18:28:00,987 Skipping link: No binaries permitted for indelpost: https://files.pythonhosted.org/packages/46/cb/e3d2658e49d38ec2d4e5c808890b859d40fea97cd421707db6efda498aa9/indelpost-0.1.8-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=5c358b019dd1ba28f789e3dcf9ba2d4ea6efbbb9c04690a10b98adda58eaa983 (from https://pypi.org/simple/indelpost/) 2022-05-24T18:28:00,988 Found link https://files.pythonhosted.org/packages/15/55/087b1218bd7993207557d92e81ffe95dacade518fa4ab67c5fe84bfa8797/indelpost-0.1.8.tar.gz#sha256=b8eef717cfdad225ed11536adbcc4568f77a0016ffe4998af44a9d42acb41fc3 (from https://pypi.org/simple/indelpost/), version: 0.1.8 2022-05-24T18:28:00,989 Fetching project page and analyzing links: https://www.piwheels.org/simple/indelpost/ 2022-05-24T18:28:00,989 Getting page https://www.piwheels.org/simple/indelpost/ 2022-05-24T18:28:00,991 Found index url https://www.piwheels.org/simple 2022-05-24T18:28:01,248 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp37-cp37m-linux_armv7l.whl#sha256=c40acb17510a588797f13ff0e101549ac2b9d2e61f82954a28f48edd6432e411 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,248 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp37-cp37m-linux_armv6l.whl#sha256=c40acb17510a588797f13ff0e101549ac2b9d2e61f82954a28f48edd6432e411 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,249 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp35-cp35m-linux_armv7l.whl#sha256=f7838c7a1da294affea271852d1e4dc31ae67d395ec0237bde5bce0fc8f3faf6 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,249 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.8-cp35-cp35m-linux_armv6l.whl#sha256=f7838c7a1da294affea271852d1e4dc31ae67d395ec0237bde5bce0fc8f3faf6 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,250 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp39-cp39-linux_armv7l.whl#sha256=0ce1dfc2ebbdf77714be1d25a5acb833a500dbf5f95a3539b6c4fa56d0938eed (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,251 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp39-cp39-linux_armv6l.whl#sha256=0ce1dfc2ebbdf77714be1d25a5acb833a500dbf5f95a3539b6c4fa56d0938eed (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,251 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp37-cp37m-linux_armv7l.whl#sha256=3ee6dc5d8f3af8abe85b3fbd0b57bfecf62440effa5e3dec2fb2d4af5582d6cb (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,252 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp37-cp37m-linux_armv6l.whl#sha256=3ee6dc5d8f3af8abe85b3fbd0b57bfecf62440effa5e3dec2fb2d4af5582d6cb (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,252 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp35-cp35m-linux_armv7l.whl#sha256=45d522081bd999e88622b3f6853ed39d08e9329a193c2802b370b31aeea4ac1f (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,253 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.7-cp35-cp35m-linux_armv6l.whl#sha256=45d522081bd999e88622b3f6853ed39d08e9329a193c2802b370b31aeea4ac1f (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,253 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp39-cp39-linux_armv7l.whl#sha256=40384927b582f8c1468e689af5467455482a2d8fe807f4fd39a85bce5aa3486e (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,254 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp39-cp39-linux_armv6l.whl#sha256=40384927b582f8c1468e689af5467455482a2d8fe807f4fd39a85bce5aa3486e (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,254 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp37-cp37m-linux_armv7l.whl#sha256=b87c71c0eef4a84e4273697527aced120c3f6618c1aca00df8a7e3c298f3b893 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,255 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp37-cp37m-linux_armv6l.whl#sha256=b87c71c0eef4a84e4273697527aced120c3f6618c1aca00df8a7e3c298f3b893 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,255 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp35-cp35m-linux_armv7l.whl#sha256=4f3c694ada7ad26f382ba87bcc9f19a66237df3db3c4a29020812c2006d1dcdb (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,256 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.6-cp35-cp35m-linux_armv6l.whl#sha256=4f3c694ada7ad26f382ba87bcc9f19a66237df3db3c4a29020812c2006d1dcdb (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,256 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.5-cp39-cp39-linux_armv7l.whl#sha256=8e716a1cb37b6a64ba5f610942d8762b4b3fe08d9ece4918bbdb930e2511acd9 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,257 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.5-cp39-cp39-linux_armv6l.whl#sha256=8e716a1cb37b6a64ba5f610942d8762b4b3fe08d9ece4918bbdb930e2511acd9 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,257 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.5-cp37-cp37m-linux_armv7l.whl#sha256=6bf911db05b496bfe00bf54a79466323200b1d2cbf3d8013d835bd93a998604d (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,258 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.5-cp37-cp37m-linux_armv6l.whl#sha256=6bf911db05b496bfe00bf54a79466323200b1d2cbf3d8013d835bd93a998604d (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,258 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.5-cp35-cp35m-linux_armv7l.whl#sha256=b6794baa812e4240cb4e4fb580321ae21d228d821e79e542d53c29d66c0db434 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,259 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.5-cp35-cp35m-linux_armv6l.whl#sha256=b6794baa812e4240cb4e4fb580321ae21d228d821e79e542d53c29d66c0db434 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,259 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.4-cp39-cp39-linux_armv7l.whl#sha256=33889dae6324730a55f67f6edf521ad6221afad230912229ec83b9933a275d1e (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,260 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.4-cp39-cp39-linux_armv6l.whl#sha256=33889dae6324730a55f67f6edf521ad6221afad230912229ec83b9933a275d1e (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,260 Skipping link: No binaries permitted for indelpost: 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https://www.piwheels.org/simple/indelpost/indelpost-0.1.4-cp35-cp35m-linux_armv6l.whl#sha256=28d176690693a312eccf2d0193bb8356a5d1be9e94dd2f751cec5c8142cd74a1 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,262 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.3-cp39-cp39-linux_armv7l.whl#sha256=82d4b74a5b0c08b2e6e8cdb19d8686fe91f00bc6423d776897f611b6271cb9ed (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,263 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.3-cp39-cp39-linux_armv6l.whl#sha256=82d4b74a5b0c08b2e6e8cdb19d8686fe91f00bc6423d776897f611b6271cb9ed (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,263 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.3-cp37-cp37m-linux_armv7l.whl#sha256=1ae4eceba7c821e63f647d587090644e56e20794f722d32bbd1a07622bba7a6a (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,264 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.3-cp37-cp37m-linux_armv6l.whl#sha256=1ae4eceba7c821e63f647d587090644e56e20794f722d32bbd1a07622bba7a6a (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,264 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.3-cp35-cp35m-linux_armv7l.whl#sha256=51f8706a7df2b594def377030b9ade1a6336209f461c1e86deab37f47e5372c0 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,264 Skipping link: No binaries permitted for indelpost: 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https://www.piwheels.org/simple/indelpost/indelpost-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=b8e074dd094caa2d1a34f02d321df7065f7d2ad135c7c67335fae7b303e330b8 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,267 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=b8e074dd094caa2d1a34f02d321df7065f7d2ad135c7c67335fae7b303e330b8 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,267 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.2-cp35-cp35m-linux_armv7l.whl#sha256=51ba919878703ce936b72a80f3d767c9c60d65e7a9165fa9c49baf99243c0f7f (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,267 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.2-cp35-cp35m-linux_armv6l.whl#sha256=51ba919878703ce936b72a80f3d767c9c60d65e7a9165fa9c49baf99243c0f7f (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,268 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=7fa7caeb896b7fc58ac14b1462a6a0a5bc7cfe304d0c2d99851dd52b322ba811 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,269 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=7fa7caeb896b7fc58ac14b1462a6a0a5bc7cfe304d0c2d99851dd52b322ba811 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,269 Skipping link: No binaries permitted for indelpost: 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https://www.piwheels.org/simple/indelpost/indelpost-0.0.4-cp35-cp35m-linux_armv7l.whl#sha256=ef2c25b3285b57f47cb57dc92d2c4e76e2e8b5f4ab9a6d50c547bcad37e6e6f1 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,281 Skipping link: No binaries permitted for indelpost: https://www.piwheels.org/simple/indelpost/indelpost-0.0.4-cp35-cp35m-linux_armv6l.whl#sha256=ef2c25b3285b57f47cb57dc92d2c4e76e2e8b5f4ab9a6d50c547bcad37e6e6f1 (from https://www.piwheels.org/simple/indelpost/) 2022-05-24T18:28:01,282 Skipping link: not a file: https://www.piwheels.org/simple/indelpost/ 2022-05-24T18:28:01,282 Skipping link: not a file: https://pypi.org/simple/indelpost/ 2022-05-24T18:28:01,333 Given no hashes to check 1 links for project 'indelpost': discarding no candidates 2022-05-24T18:28:01,375 Collecting indelpost==0.1.8 2022-05-24T18:28:01,380 Created temporary directory: /tmp/pip-unpack-xbo1ofbo 2022-05-24T18:28:01,476 Downloading indelpost-0.1.8.tar.gz (973 kB) 2022-05-24T18:28:02,618 Added indelpost==0.1.8 from https://files.pythonhosted.org/packages/15/55/087b1218bd7993207557d92e81ffe95dacade518fa4ab67c5fe84bfa8797/indelpost-0.1.8.tar.gz#sha256=b8eef717cfdad225ed11536adbcc4568f77a0016ffe4998af44a9d42acb41fc3 to build tracker '/tmp/pip-build-tracker-m6ibqp2s' 2022-05-24T18:28:02,639 Created temporary directory: /tmp/pip-build-env-xychvway 2022-05-24T18:28:02,660 Created temporary directory: /tmp/pip-standalone-pip-v9nkba8h 2022-05-24T18:28:05,093 Installing build dependencies: started 2022-05-24T18:28:05,095 Running command pip subprocess to install build dependencies 2022-05-24T18:28:16,278 Using pip 22.1 from /tmp/pip-standalone-pip-v9nkba8h/__env_pip__.zip/pip (python 3.9) 2022-05-24T18:28:17,732 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-24T18:28:21,858 Collecting setuptools 2022-05-24T18:28:22,144 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.3.2-py3-none-any.whl (1.2 MB) 2022-05-24T18:28:22,826 Collecting wheel 2022-05-24T18:28:22,861 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-05-24T18:28:23,466 Collecting pysam>=0.15.0 2022-05-24T18:28:23,495 Downloading https://www.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv7l.whl (11.4 MB) 2022-05-24T18:28:26,190 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.4/11.4 MB 4.1 MB/s eta 0:00:00 2022-05-24T18:28:30,445 Collecting numpy>=1.16.0 2022-05-24T18:28:33,066 Using cached https://www.piwheels.org/simple/numpy/numpy-1.22.4-cp39-cp39-linux_armv7l.whl (13.0 MB) 2022-05-24T18:28:37,800 Collecting cython>=0.29.12 2022-05-24T18:28:38,966 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.30-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-05-24T18:28:43,514 Installing collected packages: pysam, wheel, setuptools, numpy, cython 2022-05-24T18:28:46,739 Creating /tmp/pip-build-env-xychvway/overlay/bin 2022-05-24T18:28:46,743 changing mode of /tmp/pip-build-env-xychvway/overlay/bin/wheel to 755 2022-05-24T18:29:10,327 changing mode of /tmp/pip-build-env-xychvway/overlay/bin/f2py to 755 2022-05-24T18:29:10,331 changing mode of /tmp/pip-build-env-xychvway/overlay/bin/f2py3 to 755 2022-05-24T18:29:10,336 changing mode of /tmp/pip-build-env-xychvway/overlay/bin/f2py3.9 to 755 2022-05-24T18:29:16,703 changing mode of /tmp/pip-build-env-xychvway/overlay/bin/cygdb to 755 2022-05-24T18:29:16,708 changing mode of /tmp/pip-build-env-xychvway/overlay/bin/cython to 755 2022-05-24T18:29:16,712 changing mode of /tmp/pip-build-env-xychvway/overlay/bin/cythonize to 755 2022-05-24T18:29:16,769 Successfully installed cython-0.29.30 numpy-1.22.4 pysam-0.19.0 setuptools-62.3.2 wheel-0.37.1 2022-05-24T18:29:17,643 Installing build dependencies: finished with status 'done' 2022-05-24T18:29:17,674 Getting requirements to build wheel: started 2022-05-24T18:29:17,676 Running command Getting requirements to build wheel 2022-05-24T18:30:18,502 Compiling indelpost/variant.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,504 Compiling indelpost/utilities.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,504 Compiling indelpost/pileup.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,504 Compiling indelpost/varaln.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,505 Compiling indelpost/contig.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,505 Compiling indelpost/local_reference.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,505 Compiling indelpost/softclip.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,506 Compiling indelpost/localn.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,506 Compiling indelpost/gappedaln.pyx because it depends on /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/libchtslib.pxd. 2022-05-24T18:30:18,506 [1/9] Cythonizing indelpost/contig.pyx 2022-05-24T18:30:18,506 [2/9] Cythonizing indelpost/gappedaln.pyx 2022-05-24T18:30:18,507 [3/9] Cythonizing indelpost/local_reference.pyx 2022-05-24T18:30:18,507 [4/9] Cythonizing indelpost/localn.pyx 2022-05-24T18:30:18,507 [5/9] Cythonizing indelpost/pileup.pyx 2022-05-24T18:30:18,508 [6/9] Cythonizing indelpost/softclip.pyx 2022-05-24T18:30:18,508 [7/9] Cythonizing indelpost/utilities.pyx 2022-05-24T18:30:18,508 [8/9] Cythonizing indelpost/varaln.pyx 2022-05-24T18:30:18,509 [9/9] Cythonizing indelpost/variant.pyx 2022-05-24T18:30:22,592 running egg_info 2022-05-24T18:30:23,201 writing indelpost.egg-info/PKG-INFO 2022-05-24T18:30:23,777 writing dependency_links to indelpost.egg-info/dependency_links.txt 2022-05-24T18:30:26,648 writing requirements to indelpost.egg-info/requires.txt 2022-05-24T18:30:27,221 writing top-level names to indelpost.egg-info/top_level.txt 2022-05-24T18:30:27,909 reading manifest file 'indelpost.egg-info/SOURCES.txt' 2022-05-24T18:30:27,914 reading manifest template 'MANIFEST.in' 2022-05-24T18:30:27,921 adding license file 'LICENSE' 2022-05-24T18:30:27,929 writing manifest file 'indelpost.egg-info/SOURCES.txt' 2022-05-24T18:30:29,099 Getting requirements to build wheel: finished with status 'done' 2022-05-24T18:30:29,124 Created temporary directory: /tmp/pip-modern-metadata-n10_6sin 2022-05-24T18:30:29,130 Preparing metadata (pyproject.toml): started 2022-05-24T18:30:29,132 Running command Preparing metadata (pyproject.toml) 2022-05-24T18:30:37,534 running dist_info 2022-05-24T18:30:38,150 creating /tmp/pip-modern-metadata-n10_6sin/indelpost.egg-info 2022-05-24T18:30:38,739 writing /tmp/pip-modern-metadata-n10_6sin/indelpost.egg-info/PKG-INFO 2022-05-24T18:30:39,297 writing dependency_links to /tmp/pip-modern-metadata-n10_6sin/indelpost.egg-info/dependency_links.txt 2022-05-24T18:30:42,078 writing requirements to /tmp/pip-modern-metadata-n10_6sin/indelpost.egg-info/requires.txt 2022-05-24T18:30:42,636 writing top-level names to /tmp/pip-modern-metadata-n10_6sin/indelpost.egg-info/top_level.txt 2022-05-24T18:30:42,638 writing manifest file '/tmp/pip-modern-metadata-n10_6sin/indelpost.egg-info/SOURCES.txt' 2022-05-24T18:30:43,303 reading manifest file '/tmp/pip-modern-metadata-n10_6sin/indelpost.egg-info/SOURCES.txt' 2022-05-24T18:30:43,306 reading manifest template 'MANIFEST.in' 2022-05-24T18:30:43,312 adding license file 'LICENSE' 2022-05-24T18:30:43,319 writing manifest file '/tmp/pip-modern-metadata-n10_6sin/indelpost.egg-info/SOURCES.txt' 2022-05-24T18:30:43,321 creating '/tmp/pip-modern-metadata-n10_6sin/indelpost-0.1.8.dist-info' 2022-05-24T18:30:43,519 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-05-24T18:30:43,878 Preparing metadata (pyproject.toml): finished with status 'done' 2022-05-24T18:30:43,892 Source in /tmp/pip-wheel-nai_4i70/indelpost_c0b058a6d8ac40708d9af918eaa15b9a has version 0.1.8, which satisfies requirement indelpost==0.1.8 from https://files.pythonhosted.org/packages/15/55/087b1218bd7993207557d92e81ffe95dacade518fa4ab67c5fe84bfa8797/indelpost-0.1.8.tar.gz#sha256=b8eef717cfdad225ed11536adbcc4568f77a0016ffe4998af44a9d42acb41fc3 2022-05-24T18:30:43,894 Removed indelpost==0.1.8 from https://files.pythonhosted.org/packages/15/55/087b1218bd7993207557d92e81ffe95dacade518fa4ab67c5fe84bfa8797/indelpost-0.1.8.tar.gz#sha256=b8eef717cfdad225ed11536adbcc4568f77a0016ffe4998af44a9d42acb41fc3 from build tracker '/tmp/pip-build-tracker-m6ibqp2s' 2022-05-24T18:30:43,903 Created temporary directory: /tmp/pip-unpack-xks9un0o 2022-05-24T18:30:43,904 Building wheels for collected packages: indelpost 2022-05-24T18:30:43,913 Created temporary directory: /tmp/pip-wheel-geizl56u 2022-05-24T18:30:43,914 Destination directory: /tmp/pip-wheel-geizl56u 2022-05-24T18:30:43,919 Building wheel for indelpost (pyproject.toml): started 2022-05-24T18:30:43,921 Running command Building wheel for indelpost (pyproject.toml) 2022-05-24T18:30:51,685 running bdist_wheel 2022-05-24T18:30:51,784 running build 2022-05-24T18:30:51,785 running build_py 2022-05-24T18:30:52,385 creating build 2022-05-24T18:30:52,386 creating build/lib.linux-armv7l-cpython-39 2022-05-24T18:30:52,387 creating build/lib.linux-armv7l-cpython-39/indelpost 2022-05-24T18:30:52,389 copying indelpost/alleles.py -> build/lib.linux-armv7l-cpython-39/indelpost 2022-05-24T18:30:52,394 copying indelpost/consensus.py -> build/lib.linux-armv7l-cpython-39/indelpost 2022-05-24T18:30:52,398 copying indelpost/version.py -> build/lib.linux-armv7l-cpython-39/indelpost 2022-05-24T18:30:52,401 copying indelpost/__init__.py -> build/lib.linux-armv7l-cpython-39/indelpost 2022-05-24T18:30:52,405 running build_ext 2022-05-24T18:30:52,418 building 'indelpost.variant' extension 2022-05-24T18:30:52,419 creating build/temp.linux-armv7l-cpython-39 2022-05-24T18:30:52,420 creating build/temp.linux-armv7l-cpython-39/indelpost 2022-05-24T18:30:52,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/variant.c -o build/temp.linux-armv7l-cpython-39/indelpost/variant.o 2022-05-24T18:30:53,308 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:30:53,309 from indelpost/variant.c:735: 2022-05-24T18:30:53,309 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:30:53,310 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:30:53,310 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:30:53,310 | ^ 2022-05-24T18:30:55,829 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:30:55,829 from indelpost/variant.c:745: 2022-05-24T18:30:55,830 At top level: 2022-05-24T18:30:55,830 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:30:55,831 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:30:55,831 | ^~~~~~~~~ 2022-05-24T18:30:55,832 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:30:55,832 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:30:55,833 | ^~~~~~~~~~~ 2022-05-24T18:30:55,833 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:30:55,833 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:30:55,834 | ^~~~~~~~~~ 2022-05-24T18:30:55,834 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:30:55,834 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:30:55,835 | ^~~~~~~~~ 2022-05-24T18:30:55,835 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:30:55,835 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:30:55,836 | ^~~~~~~~~~~~ 2022-05-24T18:30:55,836 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:30:55,836 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:30:55,837 | ^~~~~~~~~~~~ 2022-05-24T18:30:55,837 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:30:55,837 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:30:55,837 | ^~~~~~~~~~ 2022-05-24T18:30:55,838 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:30:55,838 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:30:55,838 | ^~~~~~~~~ 2022-05-24T18:30:55,839 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:30:55,839 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:30:55,839 | ^~~~~~~~~ 2022-05-24T18:30:55,840 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:30:55,840 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:30:55,840 | ^~~~~~~~~~~~ 2022-05-24T18:30:55,841 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:30:55,841 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:30:55,841 | ^~~~~~~~~~ 2022-05-24T18:30:55,842 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:30:55,842 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:30:55,842 | ^~~~~~~~~ 2022-05-24T18:31:34,946 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/variant.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/variant.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:31:35,336 building 'indelpost.utilities' extension 2022-05-24T18:31:35,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/utilities.c -o build/temp.linux-armv7l-cpython-39/indelpost/utilities.o 2022-05-24T18:31:36,168 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:31:36,168 from indelpost/utilities.c:735: 2022-05-24T18:31:36,169 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:31:36,169 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:31:36,170 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:31:36,170 | ^ 2022-05-24T18:31:41,836 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:31:41,837 from indelpost/utilities.c:745: 2022-05-24T18:31:41,837 At top level: 2022-05-24T18:31:41,839 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:31:41,840 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:31:41,840 | ^~~~~~~~~ 2022-05-24T18:31:41,841 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:31:41,841 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:31:41,841 | ^~~~~~~~~~~ 2022-05-24T18:31:41,841 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:31:41,842 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:31:41,842 | ^~~~~~~~~~ 2022-05-24T18:31:41,842 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:31:41,843 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:31:41,843 | ^~~~~~~~~ 2022-05-24T18:31:41,844 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:31:41,844 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:31:41,844 | ^~~~~~~~~~~~ 2022-05-24T18:31:41,845 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:31:41,845 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:31:41,845 | ^~~~~~~~~~~~ 2022-05-24T18:31:41,846 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:31:41,846 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:31:41,846 | ^~~~~~~~~~ 2022-05-24T18:31:41,846 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:31:41,847 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:31:41,847 | ^~~~~~~~~ 2022-05-24T18:31:41,848 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:31:41,849 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:31:41,849 | ^~~~~~~~~ 2022-05-24T18:31:41,849 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:31:41,850 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:31:41,850 | ^~~~~~~~~~~~ 2022-05-24T18:31:41,850 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:31:41,851 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:31:41,851 | ^~~~~~~~~~ 2022-05-24T18:31:41,852 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:31:41,852 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:31:41,852 | ^~~~~~~~~ 2022-05-24T18:32:37,339 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/utilities.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/utilities.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:32:37,824 building 'indelpost.pileup' extension 2022-05-24T18:32:37,827 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/pileup.c -o build/temp.linux-armv7l-cpython-39/indelpost/pileup.o 2022-05-24T18:32:38,696 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:32:38,697 from indelpost/pileup.c:735: 2022-05-24T18:32:38,697 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:32:38,698 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:32:38,698 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:32:38,698 | ^ 2022-05-24T18:32:43,618 At top level: 2022-05-24T18:32:43,630 indelpost/pileup.c:8523:18: warning: ‘__pyx_f_9indelpost_6pileup_leftalign_cigar’ defined but not used [-Wunused-function] 2022-05-24T18:32:43,630 8523 | static PyObject *__pyx_f_9indelpost_6pileup_leftalign_cigar(PyObject *__pyx_v_cigarstring, struct __pyx_obj_9indelpost_7variant_Variant *__pyx_v_target, int __pyx_v_read_start) { 2022-05-24T18:32:43,631 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-05-24T18:32:43,632 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:32:43,632 from indelpost/pileup.c:745: 2022-05-24T18:32:43,633 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:32:43,633 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:32:43,633 | ^~~~~~~~~ 2022-05-24T18:32:43,634 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:32:43,634 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:32:43,634 | ^~~~~~~~~~~ 2022-05-24T18:32:43,635 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:32:43,635 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:32:43,635 | ^~~~~~~~~~ 2022-05-24T18:32:43,636 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:32:43,636 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:32:43,636 | ^~~~~~~~~ 2022-05-24T18:32:43,637 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:32:43,637 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:32:43,638 | ^~~~~~~~~~~~ 2022-05-24T18:32:43,638 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:32:43,638 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:32:43,639 | ^~~~~~~~~~~~ 2022-05-24T18:32:43,639 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:32:43,639 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:32:43,640 | ^~~~~~~~~~ 2022-05-24T18:32:43,640 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:32:43,640 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:32:43,641 | ^~~~~~~~~ 2022-05-24T18:32:43,641 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:32:43,641 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:32:43,641 | ^~~~~~~~~ 2022-05-24T18:32:43,642 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:32:43,642 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:32:43,642 | ^~~~~~~~~~~~ 2022-05-24T18:32:43,643 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:32:43,643 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:32:43,643 | ^~~~~~~~~~ 2022-05-24T18:32:43,643 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:32:43,644 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:32:43,644 | ^~~~~~~~~ 2022-05-24T18:34:15,440 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/pileup.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/pileup.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:34:15,954 building 'indelpost.varaln' extension 2022-05-24T18:34:15,955 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/varaln.c -o build/temp.linux-armv7l-cpython-39/indelpost/varaln.o 2022-05-24T18:34:16,841 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:34:16,841 from indelpost/varaln.c:735: 2022-05-24T18:34:16,842 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:34:16,842 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:34:16,843 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:34:16,843 | ^ 2022-05-24T18:34:22,171 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:34:22,171 from indelpost/varaln.c:745: 2022-05-24T18:34:22,172 At top level: 2022-05-24T18:34:22,173 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:34:22,173 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:34:22,173 | ^~~~~~~~~ 2022-05-24T18:34:22,174 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:34:22,174 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:34:22,175 | ^~~~~~~~~~~ 2022-05-24T18:34:22,175 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:34:22,175 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:34:22,176 | ^~~~~~~~~~ 2022-05-24T18:34:22,176 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:34:22,176 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:34:22,177 | ^~~~~~~~~ 2022-05-24T18:34:22,177 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:34:22,177 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:34:22,178 | ^~~~~~~~~~~~ 2022-05-24T18:34:22,178 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:34:22,179 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:34:22,179 | ^~~~~~~~~~~~ 2022-05-24T18:34:22,179 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:34:22,179 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:34:22,180 | ^~~~~~~~~~ 2022-05-24T18:34:22,180 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:34:22,180 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:34:22,181 | ^~~~~~~~~ 2022-05-24T18:34:22,181 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:34:22,181 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:34:22,182 | ^~~~~~~~~ 2022-05-24T18:34:22,182 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:34:22,182 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:34:22,182 | ^~~~~~~~~~~~ 2022-05-24T18:34:22,183 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:34:22,183 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:34:22,183 | ^~~~~~~~~~ 2022-05-24T18:34:22,184 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:34:22,184 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:34:22,184 | ^~~~~~~~~ 2022-05-24T18:35:36,569 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/varaln.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/varaln.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:35:37,072 building 'indelpost.contig' extension 2022-05-24T18:35:37,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/contig.c -o build/temp.linux-armv7l-cpython-39/indelpost/contig.o 2022-05-24T18:35:37,974 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:35:37,975 from indelpost/contig.c:735: 2022-05-24T18:35:37,975 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:35:37,976 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:35:37,976 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:35:37,976 | ^ 2022-05-24T18:35:40,456 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:35:40,457 from indelpost/contig.c:745: 2022-05-24T18:35:40,457 At top level: 2022-05-24T18:35:40,458 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:35:40,459 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:35:40,459 | ^~~~~~~~~ 2022-05-24T18:35:40,459 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:35:40,460 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:35:40,460 | ^~~~~~~~~~~ 2022-05-24T18:35:40,460 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:35:40,461 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:35:40,461 | ^~~~~~~~~~ 2022-05-24T18:35:40,461 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:35:40,462 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:35:40,462 | ^~~~~~~~~ 2022-05-24T18:35:40,462 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:35:40,463 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:35:40,463 | ^~~~~~~~~~~~ 2022-05-24T18:35:40,463 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:35:40,464 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:35:40,464 | ^~~~~~~~~~~~ 2022-05-24T18:35:40,464 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:35:40,465 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:35:40,465 | ^~~~~~~~~~ 2022-05-24T18:35:40,465 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:35:40,466 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:35:40,466 | ^~~~~~~~~ 2022-05-24T18:35:40,466 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:35:40,466 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:35:40,467 | ^~~~~~~~~ 2022-05-24T18:35:40,467 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:35:40,467 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:35:40,468 | ^~~~~~~~~~~~ 2022-05-24T18:35:40,468 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:35:40,468 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:35:40,469 | ^~~~~~~~~~ 2022-05-24T18:35:40,469 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:35:40,469 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:35:40,469 | ^~~~~~~~~ 2022-05-24T18:36:12,510 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/contig.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/contig.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:36:12,869 building 'indelpost.local_reference' extension 2022-05-24T18:36:12,871 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/local_reference.c -o build/temp.linux-armv7l-cpython-39/indelpost/local_reference.o 2022-05-24T18:36:13,687 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:36:13,687 from indelpost/local_reference.c:735: 2022-05-24T18:36:13,688 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:36:13,688 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:36:13,689 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:36:13,689 | ^ 2022-05-24T18:36:14,409 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:36:14,410 from indelpost/local_reference.c:745: 2022-05-24T18:36:14,410 At top level: 2022-05-24T18:36:14,411 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:36:14,411 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:36:14,411 | ^~~~~~~~~ 2022-05-24T18:36:14,412 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:36:14,412 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:36:14,412 | ^~~~~~~~~~~ 2022-05-24T18:36:14,413 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:14,413 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:14,413 | ^~~~~~~~~~ 2022-05-24T18:36:14,414 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:14,414 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:14,414 | ^~~~~~~~~ 2022-05-24T18:36:14,415 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:36:14,415 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:36:14,415 | ^~~~~~~~~~~~ 2022-05-24T18:36:14,416 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:36:14,416 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:36:14,416 | ^~~~~~~~~~~~ 2022-05-24T18:36:14,417 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:14,417 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:14,417 | ^~~~~~~~~~ 2022-05-24T18:36:14,418 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:14,418 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:14,419 | ^~~~~~~~~ 2022-05-24T18:36:14,419 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:36:14,420 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:36:14,420 | ^~~~~~~~~ 2022-05-24T18:36:14,421 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:36:14,421 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:36:14,421 | ^~~~~~~~~~~~ 2022-05-24T18:36:14,422 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:14,422 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:14,422 | ^~~~~~~~~~ 2022-05-24T18:36:14,423 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:14,423 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:14,423 | ^~~~~~~~~ 2022-05-24T18:36:22,926 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/local_reference.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/local_reference.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:36:23,197 building 'indelpost.softclip' extension 2022-05-24T18:36:23,199 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/softclip.c -o build/temp.linux-armv7l-cpython-39/indelpost/softclip.o 2022-05-24T18:36:24,005 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:36:24,006 from indelpost/softclip.c:735: 2022-05-24T18:36:24,006 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:36:24,006 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:36:24,007 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:36:24,007 | ^ 2022-05-24T18:36:24,861 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:36:24,862 from indelpost/softclip.c:745: 2022-05-24T18:36:24,862 At top level: 2022-05-24T18:36:24,863 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:36:24,863 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:36:24,863 | ^~~~~~~~~ 2022-05-24T18:36:24,864 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:36:24,864 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:36:24,864 | ^~~~~~~~~~~ 2022-05-24T18:36:24,865 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:24,865 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:24,866 | ^~~~~~~~~~ 2022-05-24T18:36:24,866 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:24,866 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:24,866 | ^~~~~~~~~ 2022-05-24T18:36:24,867 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:36:24,867 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:36:24,867 | ^~~~~~~~~~~~ 2022-05-24T18:36:24,868 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:36:24,868 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:36:24,868 | ^~~~~~~~~~~~ 2022-05-24T18:36:24,869 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:24,869 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:24,869 | ^~~~~~~~~~ 2022-05-24T18:36:24,870 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:24,870 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:24,870 | ^~~~~~~~~ 2022-05-24T18:36:24,871 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:36:24,871 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:36:24,872 | ^~~~~~~~~ 2022-05-24T18:36:24,872 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:36:24,873 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:36:24,873 | ^~~~~~~~~~~~ 2022-05-24T18:36:24,873 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:24,874 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:24,874 | ^~~~~~~~~~ 2022-05-24T18:36:24,875 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:24,875 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:24,875 | ^~~~~~~~~ 2022-05-24T18:36:36,390 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/softclip.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/softclip.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:36:36,674 building 'indelpost.localn' extension 2022-05-24T18:36:36,676 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/localn.c -o build/temp.linux-armv7l-cpython-39/indelpost/localn.o 2022-05-24T18:36:37,492 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:36:37,492 from indelpost/localn.c:735: 2022-05-24T18:36:37,493 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:36:37,493 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:36:37,494 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:36:37,494 | ^ 2022-05-24T18:36:39,546 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:36:39,547 from indelpost/localn.c:745: 2022-05-24T18:36:39,547 At top level: 2022-05-24T18:36:39,549 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:36:39,550 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:36:39,550 | ^~~~~~~~~ 2022-05-24T18:36:39,550 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:36:39,551 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:36:39,551 | ^~~~~~~~~~~ 2022-05-24T18:36:39,551 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:39,552 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:39,552 | ^~~~~~~~~~ 2022-05-24T18:36:39,552 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:39,553 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:39,553 | ^~~~~~~~~ 2022-05-24T18:36:39,554 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:36:39,554 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:36:39,554 | ^~~~~~~~~~~~ 2022-05-24T18:36:39,555 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:36:39,555 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:36:39,555 | ^~~~~~~~~~~~ 2022-05-24T18:36:39,555 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:39,556 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:39,556 | ^~~~~~~~~~ 2022-05-24T18:36:39,557 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:39,557 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:39,557 | ^~~~~~~~~ 2022-05-24T18:36:39,558 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:36:39,558 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:36:39,558 | ^~~~~~~~~ 2022-05-24T18:36:39,559 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:36:39,559 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:36:39,560 | ^~~~~~~~~~~~ 2022-05-24T18:36:39,560 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:36:39,560 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:36:39,560 | ^~~~~~~~~~ 2022-05-24T18:36:39,561 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:36:39,561 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:36:39,561 | ^~~~~~~~~ 2022-05-24T18:37:17,574 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/localn.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/localn.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:37:17,941 building 'indelpost.gappedaln' extension 2022-05-24T18:37:17,943 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c indelpost/gappedaln.c -o build/temp.linux-armv7l-cpython-39/indelpost/gappedaln.o 2022-05-24T18:37:18,757 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/htslib_util.h:4, 2022-05-24T18:37:18,758 from indelpost/gappedaln.c:735: 2022-05-24T18:37:18,758 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h: In function ‘sam_format_aux1’: 2022-05-24T18:37:18,759 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h:1550:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-05-24T18:37:18,759 1550 | if ((end - s) / sub_type_size < n) 2022-05-24T18:37:18,759 | ^ 2022-05-24T18:37:20,245 In file included from /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4, 2022-05-24T18:37:20,246 from indelpost/gappedaln.c:745: 2022-05-24T18:37:20,246 At top level: 2022-05-24T18:37:20,247 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:185:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2022-05-24T18:37:20,248 185 | SCOPE int kseq_read(kseq_t *seq) \ 2022-05-24T18:37:20,248 | ^~~~~~~~~ 2022-05-24T18:37:20,248 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:238:2: note: in expansion of macro ‘__KSEQ_READ’ 2022-05-24T18:37:20,249 238 | __KSEQ_READ(SCOPE) 2022-05-24T18:37:20,249 | ^~~~~~~~~~~ 2022-05-24T18:37:20,249 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:37:20,250 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:37:20,250 | ^~~~~~~~~~ 2022-05-24T18:37:20,250 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:37:20,251 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:37:20,251 | ^~~~~~~~~ 2022-05-24T18:37:20,251 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:171:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2022-05-24T18:37:20,252 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2022-05-24T18:37:20,252 | ^~~~~~~~~~~~ 2022-05-24T18:37:20,252 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:37:20,253 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:37:20,253 | ^~~~~~~~~~~~ 2022-05-24T18:37:20,253 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:37:20,254 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:37:20,254 | ^~~~~~~~~~ 2022-05-24T18:37:20,254 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:37:20,255 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:37:20,255 | ^~~~~~~~~ 2022-05-24T18:37:20,255 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:165:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2022-05-24T18:37:20,255 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2022-05-24T18:37:20,256 | ^~~~~~~~~ 2022-05-24T18:37:20,256 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:237:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2022-05-24T18:37:20,256 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2022-05-24T18:37:20,257 | ^~~~~~~~~~~~ 2022-05-24T18:37:20,257 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2022-05-24T18:37:20,257 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2022-05-24T18:37:20,258 | ^~~~~~~~~~ 2022-05-24T18:37:20,258 /tmp/pip-build-env-xychvway/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2022-05-24T18:37:20,258 9 | KSEQ_INIT(BGZF *, bgzf_read) 2022-05-24T18:37:20,259 | ^~~~~~~~~ 2022-05-24T18:37:51,786 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/indelpost/gappedaln.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/indelpost/gappedaln.cpython-39-arm-linux-gnueabihf.so 2022-05-24T18:37:53,357 installing to build/bdist.linux-armv7l/wheel 2022-05-24T18:37:53,358 running install 2022-05-24T18:37:53,428 running install_lib 2022-05-24T18:37:54,036 creating build/bdist.linux-armv7l 2022-05-24T18:37:54,037 creating build/bdist.linux-armv7l/wheel 2022-05-24T18:37:54,041 creating build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,043 copying build/lib.linux-armv7l-cpython-39/indelpost/alleles.py -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,049 copying build/lib.linux-armv7l-cpython-39/indelpost/variant.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,114 copying build/lib.linux-armv7l-cpython-39/indelpost/varaln.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,216 copying build/lib.linux-armv7l-cpython-39/indelpost/localn.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,272 copying build/lib.linux-armv7l-cpython-39/indelpost/softclip.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,294 copying build/lib.linux-armv7l-cpython-39/indelpost/local_reference.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,316 copying build/lib.linux-armv7l-cpython-39/indelpost/consensus.py -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,321 copying build/lib.linux-armv7l-cpython-39/indelpost/gappedaln.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,381 copying build/lib.linux-armv7l-cpython-39/indelpost/utilities.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,460 copying build/lib.linux-armv7l-cpython-39/indelpost/version.py -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,463 copying build/lib.linux-armv7l-cpython-39/indelpost/pileup.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,577 copying build/lib.linux-armv7l-cpython-39/indelpost/__init__.py -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,580 copying build/lib.linux-armv7l-cpython-39/indelpost/contig.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/indelpost 2022-05-24T18:37:54,632 running install_egg_info 2022-05-24T18:37:55,853 running egg_info 2022-05-24T18:37:56,443 writing indelpost.egg-info/PKG-INFO 2022-05-24T18:37:57,004 writing dependency_links to indelpost.egg-info/dependency_links.txt 2022-05-24T18:37:59,798 writing requirements to indelpost.egg-info/requires.txt 2022-05-24T18:38:00,361 writing top-level names to indelpost.egg-info/top_level.txt 2022-05-24T18:38:00,404 reading manifest file 'indelpost.egg-info/SOURCES.txt' 2022-05-24T18:38:00,413 reading manifest template 'MANIFEST.in' 2022-05-24T18:38:00,420 adding license file 'LICENSE' 2022-05-24T18:38:00,428 writing manifest file 'indelpost.egg-info/SOURCES.txt' 2022-05-24T18:38:00,431 Copying indelpost.egg-info to build/bdist.linux-armv7l/wheel/indelpost-0.1.8-py3.9.egg-info 2022-05-24T18:38:00,464 running install_scripts 2022-05-24T18:38:00,585 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-05-24T18:38:00,636 creating build/bdist.linux-armv7l/wheel/indelpost-0.1.8.dist-info/WHEEL 2022-05-24T18:38:00,642 creating '/tmp/pip-wheel-geizl56u/tmpb6k7c7d9/indelpost-0.1.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-05-24T18:38:00,648 adding 'indelpost/__init__.py' 2022-05-24T18:38:00,654 adding 'indelpost/alleles.py' 2022-05-24T18:38:00,660 adding 'indelpost/consensus.py' 2022-05-24T18:38:01,167 adding 'indelpost/contig.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:01,582 adding 'indelpost/gappedaln.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:01,759 adding 'indelpost/local_reference.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:02,280 adding 'indelpost/localn.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:03,304 adding 'indelpost/pileup.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:03,539 adding 'indelpost/softclip.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:04,378 adding 'indelpost/utilities.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:05,373 adding 'indelpost/varaln.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:06,003 adding 'indelpost/variant.cpython-39-arm-linux-gnueabihf.so' 2022-05-24T18:38:06,029 adding 'indelpost/version.py' 2022-05-24T18:38:06,036 adding 'indelpost-0.1.8.dist-info/LICENSE' 2022-05-24T18:38:06,039 adding 'indelpost-0.1.8.dist-info/METADATA' 2022-05-24T18:38:06,041 adding 'indelpost-0.1.8.dist-info/WHEEL' 2022-05-24T18:38:06,044 adding 'indelpost-0.1.8.dist-info/top_level.txt' 2022-05-24T18:38:06,046 adding 'indelpost-0.1.8.dist-info/RECORD' 2022-05-24T18:38:06,188 removing build/bdist.linux-armv7l/wheel 2022-05-24T18:38:06,618 Building wheel for indelpost (pyproject.toml): finished with status 'done' 2022-05-24T18:38:06,813 Created wheel for indelpost: filename=indelpost-0.1.8-cp39-cp39-linux_armv7l.whl size=3736344 sha256=99b4070611f04a313a631aa9d1abc38544818f03296cdd76021131318497ab11 2022-05-24T18:38:06,815 Stored in directory: /tmp/pip-ephem-wheel-cache-dv1ph2gj/wheels/1c/3e/20/0cbdf2660a21b7d37f6ff2997fb8646f860050bb7e97b462d7 2022-05-24T18:38:06,841 Successfully built indelpost 2022-05-24T18:38:07,108 Removed build tracker: '/tmp/pip-build-tracker-m6ibqp2s'