2022-05-26T15:09:18,086 Created temporary directory: /tmp/pip-ephem-wheel-cache-utu2lc2g 2022-05-26T15:09:18,093 Created temporary directory: /tmp/pip-req-tracker-immg7m__ 2022-05-26T15:09:18,094 Initialized build tracking at /tmp/pip-req-tracker-immg7m__ 2022-05-26T15:09:18,094 Created build tracker: /tmp/pip-req-tracker-immg7m__ 2022-05-26T15:09:18,094 Entered build tracker: /tmp/pip-req-tracker-immg7m__ 2022-05-26T15:09:18,096 Created temporary directory: /tmp/pip-wheel-es6rgo48 2022-05-26T15:09:18,157 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-26T15:09:18,160 2 location(s) to search for versions of novartis-pisces: 2022-05-26T15:09:18,160 * https://pypi.org/simple/novartis-pisces/ 2022-05-26T15:09:18,160 * https://www.piwheels.org/simple/novartis-pisces/ 2022-05-26T15:09:18,161 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/ 2022-05-26T15:09:18,163 Getting page https://pypi.org/simple/novartis-pisces/ 2022-05-26T15:09:18,167 Found index url https://pypi.org/simple 2022-05-26T15:09:18,494 Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1 2022-05-26T15:09:18,495 Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2 2022-05-26T15:09:18,496 Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3 2022-05-26T15:09:18,497 Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1 2022-05-26T15:09:18,498 Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4 2022-05-26T15:09:18,498 Found link https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.2 2022-05-26T15:09:18,499 Found link https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.3 2022-05-26T15:09:18,500 Found link https://files.pythonhosted.org/packages/df/1b/609c197d769cf58999fef31ca73018158da30c34fee05041fa4b72131db8/novartis-pisces-0.1.4.4.tar.gz#sha256=c19c9dddb881df716d043368adf8fbf5ad715b2d1b358d26d7b54745e66b11a8 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.4 2022-05-26T15:09:18,501 Found link https://files.pythonhosted.org/packages/f9/86/6109b1944321f01860299418d02854fa363d089bf41f2c88653bdd14cdc0/novartis-pisces-0.1.5.tar.gz#sha256=5b4ceff936dafbea0c0d045a4d2e7246e1991ee120c7c7f80753a7c7d6952d6f (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5 2022-05-26T15:09:18,502 Found link https://files.pythonhosted.org/packages/a3/e9/395d751e1b0d5b42d522459785f13d62837c39fbaf574a74dcbf43838982/novartis-pisces-0.1.5.1.tar.gz#sha256=d1980eb94ccd68e76fd9be5c1afa0b39dadd45f1a8c53c8d31a478336e0a69b0 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5.1 2022-05-26T15:09:18,503 Found link https://files.pythonhosted.org/packages/5d/4f/545e40e9507a80647bfeb966da7da5271920101f1554d36fbc7306d0c0d6/novartis-pisces-0.1.5.2.tar.gz#sha256=97c5fff2251615022e8ce3d57e3df7b8e0c26aa845a09429ac98664aa8499159 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5.2 2022-05-26T15:09:18,503 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/ 2022-05-26T15:09:18,504 Getting page https://www.piwheels.org/simple/novartis-pisces/ 2022-05-26T15:09:18,507 Found index url https://www.piwheels.org/simple 2022-05-26T15:09:18,730 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.5.1-py3-none-any.whl#sha256=87da139877c1ef0c13f62f10cd4b8bb26d9b974802bbeaf78db3a35cc7d3db10 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,731 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.5-py3-none-any.whl#sha256=7e39afffb0c219f2e37c2f7b017192cc9c5bb3792dd6af985d7939124a0103da (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,732 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.4-py3-none-any.whl#sha256=9a602e2da8188d15ac02b3692617eff25353f07156d354e90e113137fa3b61bd (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,732 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.3-py3-none-any.whl#sha256=0df67ceec82649982fda766535f4204513e9793b6cbf2249d232a8b3356a6612 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,733 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.2-py3-none-any.whl#sha256=1f3afb64b4b21079a21a00759a77ab8d214e7fcb2e1828a43af80907f45fe8b1 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,734 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4-py3-none-any.whl#sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,734 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,735 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,736 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,736 Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/) 2022-05-26T15:09:18,770 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates 2022-05-26T15:09:18,802 Collecting novartis-pisces==0.1.5.2 2022-05-26T15:09:18,805 Created temporary directory: /tmp/pip-unpack-7k4lrm3m 2022-05-26T15:09:19,590 Downloading novartis-pisces-0.1.5.2.tar.gz (18.4 MB) 2022-05-26T15:09:28,143 Added novartis-pisces==0.1.5.2 from https://files.pythonhosted.org/packages/5d/4f/545e40e9507a80647bfeb966da7da5271920101f1554d36fbc7306d0c0d6/novartis-pisces-0.1.5.2.tar.gz#sha256=97c5fff2251615022e8ce3d57e3df7b8e0c26aa845a09429ac98664aa8499159 to build tracker '/tmp/pip-req-tracker-immg7m__' 2022-05-26T15:09:28,146 Running setup.py (path:/tmp/pip-wheel-es6rgo48/novartis-pisces_d161cebce2634a10a1eba0bc06898a4d/setup.py) egg_info for package novartis-pisces 2022-05-26T15:09:28,147 Created temporary directory: /tmp/pip-pip-egg-info-uv943okf 2022-05-26T15:09:28,148 Running command python setup.py egg_info 2022-05-26T15:09:33,572 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2022-05-26T15:09:36,630 running egg_info 2022-05-26T15:09:36,637 creating /tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info 2022-05-26T15:09:36,640 writing dependency_links to /tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info/dependency_links.txt 2022-05-26T15:09:36,645 writing entry points to /tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info/entry_points.txt 2022-05-26T15:09:36,648 writing top-level names to /tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info/top_level.txt 2022-05-26T15:09:36,656 writing /tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info/PKG-INFO 2022-05-26T15:09:36,661 writing requirements to /tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info/requires.txt 2022-05-26T15:09:36,666 writing manifest file '/tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info/SOURCES.txt' 2022-05-26T15:09:37,072 reading manifest file '/tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info/SOURCES.txt' 2022-05-26T15:09:37,076 reading manifest template 'MANIFEST.in' 2022-05-26T15:09:37,095 writing manifest file '/tmp/pip-pip-egg-info-uv943okf/novartis_pisces.egg-info/SOURCES.txt' 2022-05-26T15:09:37,253 Source in /tmp/pip-wheel-es6rgo48/novartis-pisces_d161cebce2634a10a1eba0bc06898a4d has version 0.1.5.2, which satisfies requirement novartis-pisces==0.1.5.2 from https://files.pythonhosted.org/packages/5d/4f/545e40e9507a80647bfeb966da7da5271920101f1554d36fbc7306d0c0d6/novartis-pisces-0.1.5.2.tar.gz#sha256=97c5fff2251615022e8ce3d57e3df7b8e0c26aa845a09429ac98664aa8499159 2022-05-26T15:09:37,255 Removed novartis-pisces==0.1.5.2 from https://files.pythonhosted.org/packages/5d/4f/545e40e9507a80647bfeb966da7da5271920101f1554d36fbc7306d0c0d6/novartis-pisces-0.1.5.2.tar.gz#sha256=97c5fff2251615022e8ce3d57e3df7b8e0c26aa845a09429ac98664aa8499159 from build tracker '/tmp/pip-req-tracker-immg7m__' 2022-05-26T15:09:37,263 Created temporary directory: /tmp/pip-unpack-j8w5jsgx 2022-05-26T15:09:37,264 Building wheels for collected packages: novartis-pisces 2022-05-26T15:09:37,273 Created temporary directory: /tmp/pip-wheel-liatz8cg 2022-05-26T15:09:37,274 Building wheel for novartis-pisces (setup.py): started 2022-05-26T15:09:37,275 Destination directory: /tmp/pip-wheel-liatz8cg 2022-05-26T15:09:37,275 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-es6rgo48/novartis-pisces_d161cebce2634a10a1eba0bc06898a4d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-es6rgo48/novartis-pisces_d161cebce2634a10a1eba0bc06898a4d/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-liatz8cg 2022-05-26T15:09:40,310 running bdist_wheel 2022-05-26T15:09:40,317 running build 2022-05-26T15:09:40,318 running build_py 2022-05-26T15:09:40,636 creating build 2022-05-26T15:09:40,637 creating build/lib 2022-05-26T15:09:40,640 creating build/lib/pisces 2022-05-26T15:09:40,643 copying pisces/cli.py -> build/lib/pisces 2022-05-26T15:09:40,649 copying pisces/index.py -> build/lib/pisces 2022-05-26T15:09:40,657 copying pisces/fastq.py -> build/lib/pisces 2022-05-26T15:09:40,662 copying pisces/__init__.py -> build/lib/pisces 2022-05-26T15:09:40,668 copying pisces/run.py -> build/lib/pisces 2022-05-26T15:09:40,676 copying pisces/qc.py -> build/lib/pisces 2022-05-26T15:09:40,684 copying pisces/submit.py -> build/lib/pisces 2022-05-26T15:09:40,690 running egg_info 2022-05-26T15:09:40,705 writing top-level names to novartis_pisces.egg-info/top_level.txt 2022-05-26T15:09:40,708 writing novartis_pisces.egg-info/PKG-INFO 2022-05-26T15:09:40,713 writing dependency_links to novartis_pisces.egg-info/dependency_links.txt 2022-05-26T15:09:40,716 writing requirements to novartis_pisces.egg-info/requires.txt 2022-05-26T15:09:40,720 writing entry points to novartis_pisces.egg-info/entry_points.txt 2022-05-26T15:09:40,761 reading manifest file 'novartis_pisces.egg-info/SOURCES.txt' 2022-05-26T15:09:40,798 reading manifest template 'MANIFEST.in' 2022-05-26T15:09:40,827 writing manifest file 'novartis_pisces.egg-info/SOURCES.txt' 2022-05-26T15:09:40,838 copying pisces/config.json -> build/lib/pisces 2022-05-26T15:09:40,844 creating build/lib/pisces/R 2022-05-26T15:09:40,847 copying pisces/R/.Rprofile -> build/lib/pisces/R 2022-05-26T15:09:40,852 copying pisces/R/.gitignore -> build/lib/pisces/R 2022-05-26T15:09:40,858 copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R 2022-05-26T15:09:40,866 copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R 2022-05-26T15:09:40,872 creating build/lib/pisces/R/renv 2022-05-26T15:09:40,876 copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv 2022-05-26T15:09:40,886 creating build/lib/pisces/data 2022-05-26T15:09:40,890 copying pisces/data/fp_kmers.txt -> build/lib/pisces/data 2022-05-26T15:09:40,901 copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data 2022-05-26T15:09:40,908 creating build/lib/pisces/scripts 2022-05-26T15:09:40,911 copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts 2022-05-26T15:09:40,922 copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts 2022-05-26T15:09:40,931 creating build/lib/pisces/tests 2022-05-26T15:09:40,935 copying pisces/tests/test_cli.py -> build/lib/pisces/tests 2022-05-26T15:09:40,946 installing to build/bdist.linux-armv7l/wheel 2022-05-26T15:09:40,947 running install 2022-05-26T15:09:40,951 running install_lib 2022-05-26T15:09:40,960 creating build/bdist.linux-armv7l 2022-05-26T15:09:40,962 creating build/bdist.linux-armv7l/wheel 2022-05-26T15:09:40,966 creating build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:40,970 creating build/bdist.linux-armv7l/wheel/pisces/scripts 2022-05-26T15:09:40,973 copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts 2022-05-26T15:09:40,980 copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts 2022-05-26T15:09:40,987 copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:40,995 creating build/bdist.linux-armv7l/wheel/pisces/tests 2022-05-26T15:09:40,998 copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests 2022-05-26T15:09:41,005 copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:41,013 copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:41,019 copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:41,026 copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:41,033 copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:41,041 creating build/bdist.linux-armv7l/wheel/pisces/R 2022-05-26T15:09:41,045 creating build/bdist.linux-armv7l/wheel/pisces/R/renv 2022-05-26T15:09:41,048 copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv 2022-05-26T15:09:41,056 copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R 2022-05-26T15:09:41,061 copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R 2022-05-26T15:09:41,067 copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R 2022-05-26T15:09:41,075 copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R 2022-05-26T15:09:41,081 copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:41,087 copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces 2022-05-26T15:09:41,096 creating build/bdist.linux-armv7l/wheel/pisces/data 2022-05-26T15:09:41,098 copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data 2022-05-26T15:09:41,107 copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data 2022-05-26T15:09:41,115 running install_egg_info 2022-05-26T15:09:41,127 Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.5.2-py3.5.egg-info 2022-05-26T15:09:41,158 running install_scripts 2022-05-26T15:09:41,259 creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.5.2.dist-info/WHEEL 2022-05-26T15:09:41,597 Building wheel for novartis-pisces (setup.py): finished with status 'done' 2022-05-26T15:09:41,602 Created wheel for novartis-pisces: filename=novartis_pisces-0.1.5.2-py3-none-any.whl size=57670 sha256=ee8d2bce8468cf80bac576688fb20a9b147bedacf713b28a6331331038c5d297 2022-05-26T15:09:41,603 Stored in directory: /tmp/pip-ephem-wheel-cache-utu2lc2g/wheels/60/35/52/08fe90b409ed563a06168c4dc0d759f62a82bcabe804fa30b7 2022-05-26T15:09:41,621 Successfully built novartis-pisces 2022-05-26T15:09:41,636 Removed build tracker: '/tmp/pip-req-tracker-immg7m__'