2022-05-26T19:42:37,702 Created temporary directory: /tmp/pip-ephem-wheel-cache-3jx3x33n
2022-05-26T19:42:37,709 Created temporary directory: /tmp/pip-req-tracker-lp_k99gh
2022-05-26T19:42:37,709 Initialized build tracking at /tmp/pip-req-tracker-lp_k99gh
2022-05-26T19:42:37,710 Created build tracker: /tmp/pip-req-tracker-lp_k99gh
2022-05-26T19:42:37,710 Entered build tracker: /tmp/pip-req-tracker-lp_k99gh
2022-05-26T19:42:37,712 Created temporary directory: /tmp/pip-wheel-eg6erfp_
2022-05-26T19:42:37,772 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-05-26T19:42:37,776 2 location(s) to search for versions of novartis-pisces:
2022-05-26T19:42:37,776 * https://pypi.org/simple/novartis-pisces/
2022-05-26T19:42:37,776 * https://www.piwheels.org/simple/novartis-pisces/
2022-05-26T19:42:37,776 Fetching project page and analyzing links: https://pypi.org/simple/novartis-pisces/
2022-05-26T19:42:37,779 Getting page https://pypi.org/simple/novartis-pisces/
2022-05-26T19:42:37,783 Found index url https://pypi.org/simple
2022-05-26T19:42:38,111   Found link https://files.pythonhosted.org/packages/7a/69/6e62653f167dfe6d2fa7f2f6527efa22825fecf80941f3190b20b8c0b972/novartis-pisces-0.1.1.tar.gz#sha256=b41fa61940d3517b258f8d1387453bd73814aad7e987ac21641a81dba5165460 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.1
2022-05-26T19:42:38,112   Found link https://files.pythonhosted.org/packages/88/19/cdb5149b3ea5580bafffd7f6b2b18807bdd1cf364154be052bfb17b7a392/novartis-pisces-0.1.2.tar.gz#sha256=f334f331f7f9b29892fe2aa993e75b7d5fb372e7864fcc98c0e32c5b11225e00 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.2
2022-05-26T19:42:38,113   Found link https://files.pythonhosted.org/packages/b6/72/9686797df03a1087913e92f359e09d7f35458b06c9503d27cbfce69959d6/novartis-pisces-0.1.3.tar.gz#sha256=4840853713bdf9cf9c9993c1e2b3cded285f50797868c6321bce2ef669c54ced (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3
2022-05-26T19:42:38,114   Found link https://files.pythonhosted.org/packages/63/0c/bd21a99df2f38fc359ec3531b30c5439dbdd1d22e06cfeadf657af9be952/novartis-pisces-0.1.3.1.tar.gz#sha256=db8e4c9270d9b269f6dac35e7c48197f27c3127ec750b42e68d359dcaac54b39 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.3.1
2022-05-26T19:42:38,115   Found link https://files.pythonhosted.org/packages/9b/25/e64baf962e42cecb02340a0221e24866dedd8c857121a69db18f86ed86a8/novartis-pisces-0.1.4.tar.gz#sha256=51fb823659e373dc9f5dce87b5f0250b61463616ae4cdd1a480d29edef7bdb20 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4
2022-05-26T19:42:38,116   Found link https://files.pythonhosted.org/packages/47/d7/f2333e006f03d2cb23636c41e665d0b6b5d1d4bd693e0c4328306fc581f2/novartis-pisces-0.1.4.2.tar.gz#sha256=a945adbcfdb0ebe7673a58993ae9dec69b327cf60480ebb19a79af9e1dd17938 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.2
2022-05-26T19:42:38,117   Found link https://files.pythonhosted.org/packages/0a/48/055cb93cbf103efb27a5299a5784324ad7e76fe666b9eea4ea529a6c784a/novartis-pisces-0.1.4.3.tar.gz#sha256=d55da8be9deb6db568a6ce18c847486f4bf8cffdb3070c1b39b7a7a212719618 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.3
2022-05-26T19:42:38,118   Found link https://files.pythonhosted.org/packages/df/1b/609c197d769cf58999fef31ca73018158da30c34fee05041fa4b72131db8/novartis-pisces-0.1.4.4.tar.gz#sha256=c19c9dddb881df716d043368adf8fbf5ad715b2d1b358d26d7b54745e66b11a8 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.4.4
2022-05-26T19:42:38,118   Found link https://files.pythonhosted.org/packages/f9/86/6109b1944321f01860299418d02854fa363d089bf41f2c88653bdd14cdc0/novartis-pisces-0.1.5.tar.gz#sha256=5b4ceff936dafbea0c0d045a4d2e7246e1991ee120c7c7f80753a7c7d6952d6f (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5
2022-05-26T19:42:38,119   Found link https://files.pythonhosted.org/packages/a3/e9/395d751e1b0d5b42d522459785f13d62837c39fbaf574a74dcbf43838982/novartis-pisces-0.1.5.1.tar.gz#sha256=d1980eb94ccd68e76fd9be5c1afa0b39dadd45f1a8c53c8d31a478336e0a69b0 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5.1
2022-05-26T19:42:38,120   Found link https://files.pythonhosted.org/packages/5d/4f/545e40e9507a80647bfeb966da7da5271920101f1554d36fbc7306d0c0d6/novartis-pisces-0.1.5.2.tar.gz#sha256=97c5fff2251615022e8ce3d57e3df7b8e0c26aa845a09429ac98664aa8499159 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5.2
2022-05-26T19:42:38,121   Found link https://files.pythonhosted.org/packages/49/5a/10d741c26a5aadf722151c257b4ace447289e332b20af2ac5e0004d91717/novartis-pisces-0.1.5.3.tar.gz#sha256=e3739a047556b8735e92bb901606dd86059177a5447e6163781856d3f1a14e24 (from https://pypi.org/simple/novartis-pisces/), version: 0.1.5.3
2022-05-26T19:42:38,122 Fetching project page and analyzing links: https://www.piwheels.org/simple/novartis-pisces/
2022-05-26T19:42:38,122 Getting page https://www.piwheels.org/simple/novartis-pisces/
2022-05-26T19:42:38,125 Found index url https://www.piwheels.org/simple
2022-05-26T19:42:38,373   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.5.2-py3-none-any.whl#sha256=ee8d2bce8468cf80bac576688fb20a9b147bedacf713b28a6331331038c5d297 (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,374   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.5.1-py3-none-any.whl#sha256=87da139877c1ef0c13f62f10cd4b8bb26d9b974802bbeaf78db3a35cc7d3db10 (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,374   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.5-py3-none-any.whl#sha256=7e39afffb0c219f2e37c2f7b017192cc9c5bb3792dd6af985d7939124a0103da (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,375   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.4-py3-none-any.whl#sha256=9a602e2da8188d15ac02b3692617eff25353f07156d354e90e113137fa3b61bd (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,376   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.3-py3-none-any.whl#sha256=0df67ceec82649982fda766535f4204513e9793b6cbf2249d232a8b3356a6612 (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,377   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4.2-py3-none-any.whl#sha256=1f3afb64b4b21079a21a00759a77ab8d214e7fcb2e1828a43af80907f45fe8b1 (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,377   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.4-py3-none-any.whl#sha256=39a3055ebdc62506630a204a088cfa4f42615ade27909d36f06560f2ac8b75ba (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,378   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3.1-py3-none-any.whl#sha256=01160ead2aa7f47bfe8a6b47b1989993ec6cc55701d98eb00b283a7dd2c005a0 (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,378   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.3-py3-none-any.whl#sha256=0022b6d3eb89c050d399a54f590cce7fd6b6ec8a6a2288d8d261e0e5cbefc8f4 (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,379   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.2-py3-none-any.whl#sha256=532b73754e880867474c1c9c9046f131bb6ac4a8f405bb90e268a409061f484b (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,380   Skipping link: No binaries permitted for novartis-pisces: https://www.piwheels.org/simple/novartis-pisces/novartis_pisces-0.1.1-py3-none-any.whl#sha256=7f340ebd9be1b1aef037720ffe1fc5123b123bf5952db113595023dc095cb0b4 (from https://www.piwheels.org/simple/novartis-pisces/)
2022-05-26T19:42:38,414 Given no hashes to check 1 links for project 'novartis-pisces': discarding no candidates
2022-05-26T19:42:38,446 Collecting novartis-pisces==0.1.5.3
2022-05-26T19:42:38,449   Created temporary directory: /tmp/pip-unpack-l_wmck1s
2022-05-26T19:42:39,364   Downloading novartis-pisces-0.1.5.3.tar.gz (18.4 MB)
2022-05-26T19:42:47,892   Added novartis-pisces==0.1.5.3 from https://files.pythonhosted.org/packages/49/5a/10d741c26a5aadf722151c257b4ace447289e332b20af2ac5e0004d91717/novartis-pisces-0.1.5.3.tar.gz#sha256=e3739a047556b8735e92bb901606dd86059177a5447e6163781856d3f1a14e24 to build tracker '/tmp/pip-req-tracker-lp_k99gh'
2022-05-26T19:42:47,898     Running setup.py (path:/tmp/pip-wheel-eg6erfp_/novartis-pisces_ee71fcd639554181801e447b9946f00f/setup.py) egg_info for package novartis-pisces
2022-05-26T19:42:47,899     Created temporary directory: /tmp/pip-pip-egg-info-placccpm
2022-05-26T19:42:47,900     Running command python setup.py egg_info
2022-05-26T19:42:50,206     running egg_info
2022-05-26T19:42:50,212     creating /tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info
2022-05-26T19:42:50,214     writing entry points to /tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info/entry_points.txt
2022-05-26T19:42:50,218     writing requirements to /tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info/requires.txt
2022-05-26T19:42:50,220     writing dependency_links to /tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info/dependency_links.txt
2022-05-26T19:42:50,222     writing top-level names to /tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info/top_level.txt
2022-05-26T19:42:50,224     writing /tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info/PKG-INFO
2022-05-26T19:42:50,232     writing manifest file '/tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info/SOURCES.txt'
2022-05-26T19:42:50,624     reading manifest file '/tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info/SOURCES.txt'
2022-05-26T19:42:50,628     reading manifest template 'MANIFEST.in'
2022-05-26T19:42:50,645     writing manifest file '/tmp/pip-pip-egg-info-placccpm/novartis_pisces.egg-info/SOURCES.txt'
2022-05-26T19:42:50,787   Source in /tmp/pip-wheel-eg6erfp_/novartis-pisces_ee71fcd639554181801e447b9946f00f has version 0.1.5.3, which satisfies requirement novartis-pisces==0.1.5.3 from https://files.pythonhosted.org/packages/49/5a/10d741c26a5aadf722151c257b4ace447289e332b20af2ac5e0004d91717/novartis-pisces-0.1.5.3.tar.gz#sha256=e3739a047556b8735e92bb901606dd86059177a5447e6163781856d3f1a14e24
2022-05-26T19:42:50,789   Removed novartis-pisces==0.1.5.3 from https://files.pythonhosted.org/packages/49/5a/10d741c26a5aadf722151c257b4ace447289e332b20af2ac5e0004d91717/novartis-pisces-0.1.5.3.tar.gz#sha256=e3739a047556b8735e92bb901606dd86059177a5447e6163781856d3f1a14e24 from build tracker '/tmp/pip-req-tracker-lp_k99gh'
2022-05-26T19:42:50,797 Created temporary directory: /tmp/pip-unpack-bgype6zh
2022-05-26T19:42:50,798 Building wheels for collected packages: novartis-pisces
2022-05-26T19:42:50,807   Created temporary directory: /tmp/pip-wheel-7v94bihw
2022-05-26T19:42:50,808   Building wheel for novartis-pisces (setup.py): started
2022-05-26T19:42:50,809   Destination directory: /tmp/pip-wheel-7v94bihw
2022-05-26T19:42:50,809   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-eg6erfp_/novartis-pisces_ee71fcd639554181801e447b9946f00f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-eg6erfp_/novartis-pisces_ee71fcd639554181801e447b9946f00f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7v94bihw
2022-05-26T19:42:53,204   running bdist_wheel
2022-05-26T19:42:53,221   running build
2022-05-26T19:42:53,221   running build_py
2022-05-26T19:42:53,559   creating build
2022-05-26T19:42:53,561   creating build/lib
2022-05-26T19:42:53,562   creating build/lib/pisces
2022-05-26T19:42:53,564   copying pisces/index.py -> build/lib/pisces
2022-05-26T19:42:53,571   copying pisces/cli.py -> build/lib/pisces
2022-05-26T19:42:53,576   copying pisces/qc.py -> build/lib/pisces
2022-05-26T19:42:53,582   copying pisces/fastq.py -> build/lib/pisces
2022-05-26T19:42:53,590   copying pisces/__init__.py -> build/lib/pisces
2022-05-26T19:42:53,597   copying pisces/submit.py -> build/lib/pisces
2022-05-26T19:42:53,604   copying pisces/run.py -> build/lib/pisces
2022-05-26T19:42:53,609   running egg_info
2022-05-26T19:42:53,644   writing dependency_links to novartis_pisces.egg-info/dependency_links.txt
2022-05-26T19:42:53,646   writing novartis_pisces.egg-info/PKG-INFO
2022-05-26T19:42:53,650   writing entry points to novartis_pisces.egg-info/entry_points.txt
2022-05-26T19:42:53,652   writing top-level names to novartis_pisces.egg-info/top_level.txt
2022-05-26T19:42:53,655   writing requirements to novartis_pisces.egg-info/requires.txt
2022-05-26T19:42:53,703   reading manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2022-05-26T19:42:53,737   reading manifest template 'MANIFEST.in'
2022-05-26T19:42:53,763   writing manifest file 'novartis_pisces.egg-info/SOURCES.txt'
2022-05-26T19:42:53,773   copying pisces/config.json -> build/lib/pisces
2022-05-26T19:42:53,778   creating build/lib/pisces/R
2022-05-26T19:42:53,780   copying pisces/R/.Rprofile -> build/lib/pisces/R
2022-05-26T19:42:53,785   copying pisces/R/.gitignore -> build/lib/pisces/R
2022-05-26T19:42:53,789   copying pisces/R/make_expression_matrix.R -> build/lib/pisces/R
2022-05-26T19:42:53,797   copying pisces/R/set_up_dependencies.R -> build/lib/pisces/R
2022-05-26T19:42:53,801   creating build/lib/pisces/R/renv
2022-05-26T19:42:53,803   copying pisces/R/renv/activate.R -> build/lib/pisces/R/renv
2022-05-26T19:42:53,809   creating build/lib/pisces/data
2022-05-26T19:42:53,812   copying pisces/data/fp_kmers.txt -> build/lib/pisces/data
2022-05-26T19:42:53,823   copying pisces/data/fp_kmers_col1.txt -> build/lib/pisces/data
2022-05-26T19:42:53,831   creating build/lib/pisces/scripts
2022-05-26T19:42:53,834   copying pisces/scripts/create_sample_sets_stripped.py -> build/lib/pisces/scripts
2022-05-26T19:42:53,843   copying pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/lib/pisces/scripts
2022-05-26T19:42:53,851   creating build/lib/pisces/tests
2022-05-26T19:42:53,853   copying pisces/tests/test_cli.py -> build/lib/pisces/tests
2022-05-26T19:42:53,877   installing to build/bdist.linux-armv7l/wheel
2022-05-26T19:42:53,878   running install
2022-05-26T19:42:53,880   running install_lib
2022-05-26T19:42:53,887   creating build/bdist.linux-armv7l
2022-05-26T19:42:53,888   creating build/bdist.linux-armv7l/wheel
2022-05-26T19:42:53,892   creating build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:53,894   copying build/lib/pisces/index.py -> build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:53,900   copying build/lib/pisces/cli.py -> build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:53,906   creating build/bdist.linux-armv7l/wheel/pisces/tests
2022-05-26T19:42:53,908   copying build/lib/pisces/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/pisces/tests
2022-05-26T19:42:53,912   copying build/lib/pisces/qc.py -> build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:53,917   copying build/lib/pisces/fastq.py -> build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:53,924   copying build/lib/pisces/__init__.py -> build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:53,931   copying build/lib/pisces/submit.py -> build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:53,939   creating build/bdist.linux-armv7l/wheel/pisces/scripts
2022-05-26T19:42:53,942   copying build/lib/pisces/scripts/kmer_counts_to_fingerprint_strand_and_pcthuman.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2022-05-26T19:42:53,949   copying build/lib/pisces/scripts/create_sample_sets_stripped.py -> build/bdist.linux-armv7l/wheel/pisces/scripts
2022-05-26T19:42:53,958   creating build/bdist.linux-armv7l/wheel/pisces/data
2022-05-26T19:42:53,961   copying build/lib/pisces/data/fp_kmers.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2022-05-26T19:42:53,971   copying build/lib/pisces/data/fp_kmers_col1.txt -> build/bdist.linux-armv7l/wheel/pisces/data
2022-05-26T19:42:53,980   creating build/bdist.linux-armv7l/wheel/pisces/R
2022-05-26T19:42:53,984   creating build/bdist.linux-armv7l/wheel/pisces/R/renv
2022-05-26T19:42:53,987   copying build/lib/pisces/R/renv/activate.R -> build/bdist.linux-armv7l/wheel/pisces/R/renv
2022-05-26T19:42:53,994   copying build/lib/pisces/R/make_expression_matrix.R -> build/bdist.linux-armv7l/wheel/pisces/R
2022-05-26T19:42:54,002   copying build/lib/pisces/R/set_up_dependencies.R -> build/bdist.linux-armv7l/wheel/pisces/R
2022-05-26T19:42:54,008   copying build/lib/pisces/R/.gitignore -> build/bdist.linux-armv7l/wheel/pisces/R
2022-05-26T19:42:54,013   copying build/lib/pisces/R/.Rprofile -> build/bdist.linux-armv7l/wheel/pisces/R
2022-05-26T19:42:54,018   copying build/lib/pisces/config.json -> build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:54,024   copying build/lib/pisces/run.py -> build/bdist.linux-armv7l/wheel/pisces
2022-05-26T19:42:54,029   running install_egg_info
2022-05-26T19:42:54,042   Copying novartis_pisces.egg-info to build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.5.3-py3.5.egg-info
2022-05-26T19:42:54,071   running install_scripts
2022-05-26T19:42:54,285   creating build/bdist.linux-armv7l/wheel/novartis_pisces-0.1.5.3.dist-info/WHEEL
2022-05-26T19:42:54,614   Building wheel for novartis-pisces (setup.py): finished with status 'done'
2022-05-26T19:42:54,619   Created wheel for novartis-pisces: filename=novartis_pisces-0.1.5.3-py3-none-any.whl size=57672 sha256=0be70a0f10f544c510e42d56da47ae61656817a7a51943dbcaa0152b2f9d5b2e
2022-05-26T19:42:54,620   Stored in directory: /tmp/pip-ephem-wheel-cache-3jx3x33n/wheels/37/6d/f7/917dbf20256b5c8cefd00ac5706745d37bf58d4e17f1812a82
2022-05-26T19:42:54,638 Successfully built novartis-pisces
2022-05-26T19:42:54,653 Removed build tracker: '/tmp/pip-req-tracker-lp_k99gh'