2022-05-31T20:51:32,547 Created temporary directory: /tmp/pip-ephem-wheel-cache-bf0bhy0r 2022-05-31T20:51:32,554 Created temporary directory: /tmp/pip-req-tracker-b6uebvuy 2022-05-31T20:51:32,555 Initialized build tracking at /tmp/pip-req-tracker-b6uebvuy 2022-05-31T20:51:32,555 Created build tracker: /tmp/pip-req-tracker-b6uebvuy 2022-05-31T20:51:32,556 Entered build tracker: /tmp/pip-req-tracker-b6uebvuy 2022-05-31T20:51:32,557 Created temporary directory: /tmp/pip-wheel-18qghjxl 2022-05-31T20:51:32,617 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-05-31T20:51:32,620 2 location(s) to search for versions of staramr: 2022-05-31T20:51:32,620 * https://pypi.org/simple/staramr/ 2022-05-31T20:51:32,620 * https://www.piwheels.org/simple/staramr/ 2022-05-31T20:51:32,621 Fetching project page and analyzing links: https://pypi.org/simple/staramr/ 2022-05-31T20:51:32,623 Getting page https://pypi.org/simple/staramr/ 2022-05-31T20:51:32,627 Found index url 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https://files.pythonhosted.org/packages/b6/87/83b39de77cbc4f04d955d71999b431eb94235d79f98534294fef8aaf2581/staramr-0.2.0.tar.gz#sha256=8fcad2bf731089d97d9536c305b178e196c8568636768e5da9dc7edb9241baec (from https://pypi.org/simple/staramr/), version: 0.2.0 2022-05-31T20:51:33,009 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/32/fe/ef8abc1db55c973cd70f6ce91a941f613e3fe7b6af06178071ca60c15d10/staramr-0.2.1-py3-none-any.whl#sha256=e79bd3578035dc6b04d3409d3e6f3e284fbb1003625e3894e28104986ffd15e9 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,010 Found link https://files.pythonhosted.org/packages/9b/11/b64e9c1ecab39a830cc4328fc690aafbaf56bc6826708a90eeadb1b8d622/staramr-0.2.1.tar.gz#sha256=e0bdec172dea2ce1a26256cfa57570440ce636bc732e20ddbea848df9f20f102 (from https://pypi.org/simple/staramr/), version: 0.2.1 2022-05-31T20:51:33,011 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/26/23/e5c02cc1973e976dafac6a1e55097c8ea917b9886d1090338d41c90fc2f7/staramr-0.2.2-py3-none-any.whl#sha256=71fa01a4024a0fcf881dffbf1743b35b6c5be99de1fa504f2883d1ad0ce2dc49 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,012 Found link https://files.pythonhosted.org/packages/e0/a1/94a38de83f532627b171a0aead2baf59a6b4fb82b4b53a20f6d7988f0319/staramr-0.2.2.tar.gz#sha256=27f8e5da33342429dd3e0dccba4ab6198a1df2787f5570298615ec661bb68428 (from https://pypi.org/simple/staramr/), version: 0.2.2 2022-05-31T20:51:33,013 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/d5/21/baa299f120521330371ffe58d49603d0049e92f931ab00177044de6623d5/staramr-0.3.0-py3-none-any.whl#sha256=989b5362c5877dcfba34656d7210dc0597b1e6a9b1ca0b7f2c524686c7968e0b (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,013 Found link https://files.pythonhosted.org/packages/97/e2/c526bee2f9f2ca0dca92d046ffc2f4185a56f4132e15356ca45235aaf8bd/staramr-0.3.0.tar.gz#sha256=ab9b5acbed55f0cff57ee67e5288981c2002f6befd808a7ed65f4f3d98c97ca0 (from https://pypi.org/simple/staramr/), version: 0.3.0 2022-05-31T20:51:33,014 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/f7/9b/7f09766ae1e54baea291c3266e29792c46c31d5b6d2b3a56f889697ffc1a/staramr-0.4.0-py3-none-any.whl#sha256=fd6d7e296b21430588fa209c09611f4666eb50bb3958f2e78178b6ecd23fa1bc (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,015 Found link https://files.pythonhosted.org/packages/36/f5/eb4cf7a9d69810de1b3f82aba7deda78fb45e5894b298daea00fa1721bb9/staramr-0.4.0.tar.gz#sha256=3b6ad69ef280f3de6e93b3209617f0a4a29d60d9a47a0dd972ea898f0323d19e (from https://pypi.org/simple/staramr/), version: 0.4.0 2022-05-31T20:51:33,016 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/80/39/1dac22e5cdd2a94999bd82291c4c2ae1251a1b243b283de304c2f8755589/staramr-0.5.0-py3-none-any.whl#sha256=eeccb3c6b929280fccae3b59064afe461e6064782a5239a1790e34511a8b4f30 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,017 Found link https://files.pythonhosted.org/packages/70/58/7bac828bc88df38a1841df7a6ad5cf59524d4085b58bd3fd710d052176e3/staramr-0.5.0.tar.gz#sha256=6eb8bb4607a2afb4345cb346d1e09f8772dea14df4bb76212431bace9a08b57f (from https://pypi.org/simple/staramr/), version: 0.5.0 2022-05-31T20:51:33,017 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/1b/af/bc801c0cb31ecf523e0ed826478d384cb1a461694b45f70cd8512a902d05/staramr-0.5.1-py3-none-any.whl#sha256=5bf6387b50880ffb5ee980f712d43a8e15e4603908433c8882a312d9b9b31274 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,018 Found link https://files.pythonhosted.org/packages/10/6a/a33fcd3f1523ae336edd2f3db7cb0791cd7278b3d13d0a10287ff50d4cf0/staramr-0.5.1.tar.gz#sha256=6e8a63ead2c6d8aff3e459f019560f98663772166272c2345ba16f5c9c97bded (from https://pypi.org/simple/staramr/), version: 0.5.1 2022-05-31T20:51:33,019 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/f4/11/38982e14f878caec3d6d47557acbf8ec35ae45d8b9be5e16152ea0904d08/staramr-0.6.0-py3-none-any.whl#sha256=45fa75c521756c6d726a63480dde09f2d5e8a30466d632468b57b03e985744cf (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,020 Found link https://files.pythonhosted.org/packages/33/37/213f6895f0dddb21d1a7c448dc4609f560115cca0b66cfda2e08375f191b/staramr-0.6.0.tar.gz#sha256=5018d319703c769019e1cc2ba4e8dc0448f5cc86727457d7d51d7e77c4593c0b (from https://pypi.org/simple/staramr/), version: 0.6.0 2022-05-31T20:51:33,021 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/f3/bd/96e937df3bf7433e0d115eaabfa5de53e284a651b64e67122d12fa9a107b/staramr-0.6.1-py3-none-any.whl#sha256=b9537c2185b7a551704639273c48fdc790d7b997313a9d496df23f6e1f4de98b (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,021 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ad/d9/fbe1168693468fa864f87ba19de12e606520a187859926f8156b46047cf8/staramr-0.6.1-py3.6.egg#sha256=54637b9cba652407309ff4c5567bdf100a9495689cdc071dd03dcd8e8409fb37 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,022 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/cd/68/0c243dac827bf9345878d7ad4337c9d65800c21d0d9693b0fbe8f2b58714/staramr-0.6.1-py3.7.egg#sha256=1e57cbbf60883fbd204ea5689605ec5b3625b97cff0b6b42e6ee4bebd8b2097c (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,023 Found link 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https://files.pythonhosted.org/packages/bd/c5/0a1cd1ac4eba7a432fad3fe9fe8aaadd5f5d8381b870a56d0b1d2ced1278/staramr-0.7.0-py3-none-any.whl#sha256=8fc931f6f4eaa25abd53127962b2a17912a926d355290aee609d5931545f76b1 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,026 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/51/d4/ed56738b25bd9c295b62360c7bc4bfa4894235f742a4cb18eb9c52f6c0a9/staramr-0.7.0-py3.7.egg#sha256=8214114d8e120113007a7fd06f2fc83847700f1b4bc917ba3ef38e37dd48c228 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,027 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c3/6d/b6163b8e6bc20efd5e06213692ba2c0092f5b4d0ba49285df22c053efb99/staramr-0.7.0-py3.8.egg#sha256=ff33bcdf1a12c93f346fcc3fcb7a97f72d712a64f24ce83f2f3fe6764c5f508c (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,027 Found link https://files.pythonhosted.org/packages/b0/73/8d598f8d11bda54c3e0e80f1f0e64daee597d44a28aa9346c7923b9a566b/staramr-0.7.0.tar.gz#sha256=2953a17aff3dfc29258ef0f7a4ca9228de81699e3fc01d371a4e2660a760b45b (from https://pypi.org/simple/staramr/), version: 0.7.0 2022-05-31T20:51:33,028 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/4e/42/1d6e54ed69d7b28e7a6bf2b9e37c6d44fb06ac4cc0a0e89d6bc2d7f4ccce/staramr-0.7.1-py3.8.egg#sha256=2aa8da49f121091ec924f6b77d8ff65dec7142e9592f00e3d6fecf4652e0d811 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,029 Found link https://files.pythonhosted.org/packages/66/47/b016a0dc8fd4a69986c4961f58f02776bdb91ea1039abeb55e556da043c7/staramr-0.7.1.tar.gz#sha256=de411000a479bfbc6291e85bfa7012f87588ac090483dfdcd598f622bbb9d0ba (from https://pypi.org/simple/staramr/), version: 0.7.1 2022-05-31T20:51:33,030 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/cb/bb/f8102643c61c8551b32ddd47b1a7518d8012e76e75af24603edd15a960d4/staramr-0.7.2-py3-none-any.whl#sha256=4d8b00445b2ca860a9a4cdbcee25a06fa8d559db8005a092c668d796792a63e6 (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,031 Found link https://files.pythonhosted.org/packages/e4/71/3ba1115a29c1b2c4a163b5d1f9ab3e44c029db5181b424a37a8449287a2c/staramr-0.7.2.tar.gz#sha256=8b17f5094b15aa701790b3965a7743d71cb8bbb8469b2e1dfcab5cbbbb2ae6cf (from https://pypi.org/simple/staramr/), version: 0.7.2 2022-05-31T20:51:33,031 Skipping link: No binaries permitted for staramr: https://files.pythonhosted.org/packages/89/4b/7676e12549d4dadedaca7cddf6274e36775763324166ced94aa72d06838c/staramr-0.8.0-py3-none-any.whl#sha256=a62795a88d3ed4e1c41665523809c83e6a5d3b89d83aed2e62e3f2818bb63f6b (from https://pypi.org/simple/staramr/) 2022-05-31T20:51:33,032 Found link https://files.pythonhosted.org/packages/bb/c3/4f9d134050c63b9c6d911025d03abaf5cfeedd112893f3906cacd331f942/staramr-0.8.0.tar.gz#sha256=1d4e7db539984fdcf1caa26cdeb96e709b6173215443203e63cb440cc516a9b7 (from https://pypi.org/simple/staramr/), version: 0.8.0 2022-05-31T20:51:33,033 Fetching project page and analyzing links: https://www.piwheels.org/simple/staramr/ 2022-05-31T20:51:33,034 Getting page https://www.piwheels.org/simple/staramr/ 2022-05-31T20:51:33,037 Found index url https://www.piwheels.org/simple 2022-05-31T20:51:33,277 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.7.2-py3-none-any.whl#sha256=4d8b00445b2ca860a9a4cdbcee25a06fa8d559db8005a092c668d796792a63e6 (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,278 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.7.1-py3-none-any.whl#sha256=18edee67061357bd5b0b96011f95963950e33b1ab03acec5540159de4bc8dbd5 (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,278 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.7.0-py3-none-any.whl#sha256=8fc931f6f4eaa25abd53127962b2a17912a926d355290aee609d5931545f76b1 (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,279 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.7.0a0-py3-none-any.whl#sha256=777b88380e6dcad1504e93a926ab2783b3d9d7102b83c469d0393e51ac67cd45 (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,280 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.6.1-py3-none-any.whl#sha256=b9537c2185b7a551704639273c48fdc790d7b997313a9d496df23f6e1f4de98b (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,280 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.6.0-py3-none-any.whl#sha256=45fa75c521756c6d726a63480dde09f2d5e8a30466d632468b57b03e985744cf (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,281 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.5.1-py3-none-any.whl#sha256=5bf6387b50880ffb5ee980f712d43a8e15e4603908433c8882a312d9b9b31274 (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,282 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.5.0-py3-none-any.whl#sha256=eeccb3c6b929280fccae3b59064afe461e6064782a5239a1790e34511a8b4f30 (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,282 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.4.0-py3-none-any.whl#sha256=fd6d7e296b21430588fa209c09611f4666eb50bb3958f2e78178b6ecd23fa1bc (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,283 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.3.0-py3-none-any.whl#sha256=989b5362c5877dcfba34656d7210dc0597b1e6a9b1ca0b7f2c524686c7968e0b (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,284 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.2.2-py3-none-any.whl#sha256=71fa01a4024a0fcf881dffbf1743b35b6c5be99de1fa504f2883d1ad0ce2dc49 (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,284 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.2.1-py3-none-any.whl#sha256=e79bd3578035dc6b04d3409d3e6f3e284fbb1003625e3894e28104986ffd15e9 (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,285 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.2.0-py3-none-any.whl#sha256=bcc339941ae43d23708135066a14b0b587e37a84c0eb84f85d06cef6f433aa2b (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,285 Skipping link: No binaries permitted for staramr: https://www.piwheels.org/simple/staramr/staramr-0.1.0-py3-none-any.whl#sha256=e6196caf71f9bc8fa59b2fb7a13d74b0f2247207488039b6b908d9ccd52cdc4a (from https://www.piwheels.org/simple/staramr/) 2022-05-31T20:51:33,322 Given no hashes to check 1 links for project 'staramr': discarding no candidates 2022-05-31T20:51:33,354 Collecting staramr==0.8.0 2022-05-31T20:51:33,358 Created temporary directory: /tmp/pip-unpack-uh27w1dy 2022-05-31T20:51:34,011 Downloading staramr-0.8.0.tar.gz (742 kB) 2022-05-31T20:51:36,772 Added staramr==0.8.0 from https://files.pythonhosted.org/packages/bb/c3/4f9d134050c63b9c6d911025d03abaf5cfeedd112893f3906cacd331f942/staramr-0.8.0.tar.gz#sha256=1d4e7db539984fdcf1caa26cdeb96e709b6173215443203e63cb440cc516a9b7 to build tracker '/tmp/pip-req-tracker-b6uebvuy' 2022-05-31T20:51:36,776 Running setup.py (path:/tmp/pip-wheel-18qghjxl/staramr_684d3f5f432543cdb320567f376986aa/setup.py) egg_info for package staramr 2022-05-31T20:51:36,778 Created temporary directory: /tmp/pip-pip-egg-info-xny7wpbx 2022-05-31T20:51:36,779 Running command python setup.py egg_info 2022-05-31T20:51:39,154 running egg_info 2022-05-31T20:51:39,159 creating /tmp/pip-pip-egg-info-xny7wpbx/staramr.egg-info 2022-05-31T20:51:39,163 writing /tmp/pip-pip-egg-info-xny7wpbx/staramr.egg-info/PKG-INFO 2022-05-31T20:51:39,167 writing top-level names to /tmp/pip-pip-egg-info-xny7wpbx/staramr.egg-info/top_level.txt 2022-05-31T20:51:39,170 writing requirements to /tmp/pip-pip-egg-info-xny7wpbx/staramr.egg-info/requires.txt 2022-05-31T20:51:39,172 writing dependency_links to /tmp/pip-pip-egg-info-xny7wpbx/staramr.egg-info/dependency_links.txt 2022-05-31T20:51:39,176 writing manifest file '/tmp/pip-pip-egg-info-xny7wpbx/staramr.egg-info/SOURCES.txt' 2022-05-31T20:51:39,584 reading manifest file '/tmp/pip-pip-egg-info-xny7wpbx/staramr.egg-info/SOURCES.txt' 2022-05-31T20:51:39,587 reading manifest template 'MANIFEST.in' 2022-05-31T20:51:39,865 writing manifest file '/tmp/pip-pip-egg-info-xny7wpbx/staramr.egg-info/SOURCES.txt' 2022-05-31T20:51:40,003 Source in /tmp/pip-wheel-18qghjxl/staramr_684d3f5f432543cdb320567f376986aa has version 0.8.0, which satisfies requirement staramr==0.8.0 from https://files.pythonhosted.org/packages/bb/c3/4f9d134050c63b9c6d911025d03abaf5cfeedd112893f3906cacd331f942/staramr-0.8.0.tar.gz#sha256=1d4e7db539984fdcf1caa26cdeb96e709b6173215443203e63cb440cc516a9b7 2022-05-31T20:51:40,005 Removed staramr==0.8.0 from https://files.pythonhosted.org/packages/bb/c3/4f9d134050c63b9c6d911025d03abaf5cfeedd112893f3906cacd331f942/staramr-0.8.0.tar.gz#sha256=1d4e7db539984fdcf1caa26cdeb96e709b6173215443203e63cb440cc516a9b7 from build tracker '/tmp/pip-req-tracker-b6uebvuy' 2022-05-31T20:51:40,013 Created temporary directory: /tmp/pip-unpack-0kgpv883 2022-05-31T20:51:40,014 Building wheels for collected packages: staramr 2022-05-31T20:51:40,023 Created temporary directory: /tmp/pip-wheel-jt287p0v 2022-05-31T20:51:40,025 Building wheel for staramr (setup.py): started 2022-05-31T20:51:40,025 Destination directory: /tmp/pip-wheel-jt287p0v 2022-05-31T20:51:40,026 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-18qghjxl/staramr_684d3f5f432543cdb320567f376986aa/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-18qghjxl/staramr_684d3f5f432543cdb320567f376986aa/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-jt287p0v 2022-05-31T20:51:42,357 running bdist_wheel 2022-05-31T20:51:42,372 running build 2022-05-31T20:51:42,373 running build_py 2022-05-31T20:51:42,714 creating build 2022-05-31T20:51:42,715 creating build/lib 2022-05-31T20:51:42,716 creating build/lib/staramr 2022-05-31T20:51:42,719 copying staramr/SubCommand.py -> build/lib/staramr 2022-05-31T20:51:42,723 copying staramr/Utils.py -> build/lib/staramr 2022-05-31T20:51:42,727 copying staramr/__init__.py -> build/lib/staramr 2022-05-31T20:51:42,732 creating build/lib/staramr/blast 2022-05-31T20:51:42,733 copying staramr/blast/AbstractBlastDatabase.py -> build/lib/staramr/blast 2022-05-31T20:51:42,738 copying staramr/blast/__init__.py -> build/lib/staramr/blast 2022-05-31T20:51:42,741 copying staramr/blast/JobHandler.py -> build/lib/staramr/blast 2022-05-31T20:51:42,747 creating build/lib/staramr/tests 2022-05-31T20:51:42,749 copying staramr/tests/__init__.py -> build/lib/staramr/tests 2022-05-31T20:51:42,753 creating build/lib/staramr/subcommand 2022-05-31T20:51:42,755 copying staramr/subcommand/Search.py -> build/lib/staramr/subcommand 2022-05-31T20:51:42,763 copying staramr/subcommand/__init__.py -> build/lib/staramr/subcommand 2022-05-31T20:51:42,767 copying staramr/subcommand/Database.py -> build/lib/staramr/subcommand 2022-05-31T20:51:42,774 creating build/lib/staramr/exceptions 2022-05-31T20:51:42,776 copying staramr/exceptions/BlastProcessError.py -> build/lib/staramr/exceptions 2022-05-31T20:51:42,781 copying staramr/exceptions/DatabaseNotFoundException.py -> build/lib/staramr/exceptions 2022-05-31T20:51:42,785 copying staramr/exceptions/__init__.py -> build/lib/staramr/exceptions 2022-05-31T20:51:42,788 copying staramr/exceptions/InvalidPositionException.py -> build/lib/staramr/exceptions 2022-05-31T20:51:42,792 copying staramr/exceptions/CommandParseException.py -> build/lib/staramr/exceptions 2022-05-31T20:51:42,796 copying staramr/exceptions/GenotypePhenotypeMatchException.py -> build/lib/staramr/exceptions 2022-05-31T20:51:42,801 copying staramr/exceptions/DatabaseErrorException.py -> build/lib/staramr/exceptions 2022-05-31T20:51:42,806 creating build/lib/staramr/results 2022-05-31T20:51:42,808 copying staramr/results/QualityModule.py -> build/lib/staramr/results 2022-05-31T20:51:42,814 copying staramr/results/__init__.py -> build/lib/staramr/results 2022-05-31T20:51:42,818 copying staramr/results/AMRDetectionSummary.py -> build/lib/staramr/results 2022-05-31T20:51:42,824 copying staramr/results/AMRDetectionSummaryResistance.py -> build/lib/staramr/results 2022-05-31T20:51:42,829 creating build/lib/staramr/detection 2022-05-31T20:51:42,832 copying staramr/detection/AMRDetection.py -> build/lib/staramr/detection 2022-05-31T20:51:42,841 copying staramr/detection/AMRDetectionResistance.py -> build/lib/staramr/detection 2022-05-31T20:51:42,848 copying staramr/detection/AMRDetectionFactory.py -> build/lib/staramr/detection 2022-05-31T20:51:42,854 copying staramr/detection/__init__.py -> build/lib/staramr/detection 2022-05-31T20:51:42,862 creating build/lib/staramr/databases 2022-05-31T20:51:42,866 copying staramr/databases/BlastDatabaseRepositories.py -> build/lib/staramr/databases 2022-05-31T20:51:42,873 copying staramr/databases/__init__.py -> build/lib/staramr/databases 2022-05-31T20:51:42,877 copying staramr/databases/BlastDatabaseRepository.py -> build/lib/staramr/databases 2022-05-31T20:51:42,882 copying staramr/databases/AMRDatabasesManager.py -> build/lib/staramr/databases 2022-05-31T20:51:42,889 creating build/lib/staramr/blast/pointfinder 2022-05-31T20:51:42,892 copying staramr/blast/pointfinder/PointfinderBlastDatabase.py -> build/lib/staramr/blast/pointfinder 2022-05-31T20:51:42,897 copying staramr/blast/pointfinder/__init__.py -> build/lib/staramr/blast/pointfinder 2022-05-31T20:51:42,901 copying staramr/blast/pointfinder/PointfinderDatabaseInfo.py -> build/lib/staramr/blast/pointfinder 2022-05-31T20:51:42,908 creating build/lib/staramr/blast/resfinder 2022-05-31T20:51:42,911 copying staramr/blast/resfinder/ResfinderBlastDatabase.py -> build/lib/staramr/blast/resfinder 2022-05-31T20:51:42,916 copying staramr/blast/resfinder/__init__.py -> build/lib/staramr/blast/resfinder 2022-05-31T20:51:42,921 creating build/lib/staramr/blast/results 2022-05-31T20:51:42,923 copying staramr/blast/results/AMRHitHSP.py -> build/lib/staramr/blast/results 2022-05-31T20:51:42,929 copying staramr/blast/results/__init__.py -> build/lib/staramr/blast/results 2022-05-31T20:51:42,933 copying staramr/blast/results/BlastHitPartitions.py -> build/lib/staramr/blast/results 2022-05-31T20:51:42,938 copying staramr/blast/results/BlastResultsParser.py -> build/lib/staramr/blast/results 2022-05-31T20:51:42,945 creating build/lib/staramr/blast/plasmidfinder 2022-05-31T20:51:42,947 copying staramr/blast/plasmidfinder/__init__.py -> build/lib/staramr/blast/plasmidfinder 2022-05-31T20:51:42,952 copying staramr/blast/plasmidfinder/PlasmidfinderBlastDatabase.py -> build/lib/staramr/blast/plasmidfinder 2022-05-31T20:51:42,959 creating build/lib/staramr/blast/results/pointfinder 2022-05-31T20:51:42,961 copying staramr/blast/results/pointfinder/__init__.py -> build/lib/staramr/blast/results/pointfinder 2022-05-31T20:51:42,965 copying staramr/blast/results/pointfinder/PointfinderHitHSP.py -> build/lib/staramr/blast/results/pointfinder 2022-05-31T20:51:42,970 copying staramr/blast/results/pointfinder/BlastResultsParserPointfinderResistance.py -> build/lib/staramr/blast/results/pointfinder 2022-05-31T20:51:42,975 copying staramr/blast/results/pointfinder/BlastResultsParserPointfinder.py -> build/lib/staramr/blast/results/pointfinder 2022-05-31T20:51:42,981 copying staramr/blast/results/pointfinder/MutationPosition.py -> build/lib/staramr/blast/results/pointfinder 2022-05-31T20:51:42,986 creating build/lib/staramr/blast/results/resfinder 2022-05-31T20:51:42,988 copying staramr/blast/results/resfinder/BlastResultsParserResfinder.py -> build/lib/staramr/blast/results/resfinder 2022-05-31T20:51:42,992 copying staramr/blast/results/resfinder/__init__.py -> build/lib/staramr/blast/results/resfinder 2022-05-31T20:51:42,996 copying staramr/blast/results/resfinder/ResfinderHitHSP.py -> build/lib/staramr/blast/results/resfinder 2022-05-31T20:51:43,002 copying staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py -> build/lib/staramr/blast/results/resfinder 2022-05-31T20:51:43,010 creating build/lib/staramr/blast/results/plasmidfinder 2022-05-31T20:51:43,013 copying staramr/blast/results/plasmidfinder/PlasmidfinderHitHSP.py -> build/lib/staramr/blast/results/plasmidfinder 2022-05-31T20:51:43,017 copying staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinderResistance.py -> build/lib/staramr/blast/results/plasmidfinder 2022-05-31T20:51:43,021 copying staramr/blast/results/plasmidfinder/__init__.py -> build/lib/staramr/blast/results/plasmidfinder 2022-05-31T20:51:43,024 copying staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinder.py -> build/lib/staramr/blast/results/plasmidfinder 2022-05-31T20:51:43,030 creating build/lib/staramr/blast/results/pointfinder/nucleotide 2022-05-31T20:51:43,031 copying staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPRNA.py -> build/lib/staramr/blast/results/pointfinder/nucleotide 2022-05-31T20:51:43,037 copying staramr/blast/results/pointfinder/nucleotide/NucleotideMutationPosition.py -> build/lib/staramr/blast/results/pointfinder/nucleotide 2022-05-31T20:51:43,043 copying staramr/blast/results/pointfinder/nucleotide/__init__.py -> build/lib/staramr/blast/results/pointfinder/nucleotide 2022-05-31T20:51:43,049 creating build/lib/staramr/blast/results/pointfinder/codon 2022-05-31T20:51:43,051 copying staramr/blast/results/pointfinder/codon/__init__.py -> build/lib/staramr/blast/results/pointfinder/codon 2022-05-31T20:51:43,056 copying staramr/blast/results/pointfinder/codon/CodonMutationPosition.py -> build/lib/staramr/blast/results/pointfinder/codon 2022-05-31T20:51:43,061 creating build/lib/staramr/tests/unit 2022-05-31T20:51:43,063 copying staramr/tests/unit/__init__.py -> build/lib/staramr/tests/unit 2022-05-31T20:51:43,067 creating build/lib/staramr/tests/integration 2022-05-31T20:51:43,069 copying staramr/tests/integration/__init__.py -> build/lib/staramr/tests/integration 2022-05-31T20:51:43,073 creating build/lib/staramr/tests/unit/blast 2022-05-31T20:51:43,074 copying staramr/tests/unit/blast/__init__.py -> build/lib/staramr/tests/unit/blast 2022-05-31T20:51:43,079 creating build/lib/staramr/tests/unit/results 2022-05-31T20:51:43,081 copying staramr/tests/unit/results/test_AMRDetectionSummary.py -> build/lib/staramr/tests/unit/results 2022-05-31T20:51:43,091 copying staramr/tests/unit/results/test_QualityModule.py -> build/lib/staramr/tests/unit/results 2022-05-31T20:51:43,099 copying staramr/tests/unit/results/test_AMRDetectionSummaryResistance.py -> build/lib/staramr/tests/unit/results 2022-05-31T20:51:43,106 copying staramr/tests/unit/results/__init__.py -> build/lib/staramr/tests/unit/results 2022-05-31T20:51:43,112 creating build/lib/staramr/tests/unit/blast/pointfinder 2022-05-31T20:51:43,114 copying staramr/tests/unit/blast/pointfinder/__init__.py -> build/lib/staramr/tests/unit/blast/pointfinder 2022-05-31T20:51:43,118 copying staramr/tests/unit/blast/pointfinder/test_PointfinderDatabaseInfo.py -> build/lib/staramr/tests/unit/blast/pointfinder 2022-05-31T20:51:43,124 creating build/lib/staramr/tests/unit/blast/results 2022-05-31T20:51:43,126 copying staramr/tests/unit/blast/results/__init__.py -> build/lib/staramr/tests/unit/blast/results 2022-05-31T20:51:43,129 copying staramr/tests/unit/blast/results/test_BlastHitPartitions.py -> build/lib/staramr/tests/unit/blast/results 2022-05-31T20:51:43,141 creating build/lib/staramr/tests/unit/blast/results/pointfinder 2022-05-31T20:51:43,143 copying staramr/tests/unit/blast/results/pointfinder/test_PlasmidfinderHitHSP.py -> build/lib/staramr/tests/unit/blast/results/pointfinder 2022-05-31T20:51:43,150 copying staramr/tests/unit/blast/results/pointfinder/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder 2022-05-31T20:51:43,155 copying staramr/tests/unit/blast/results/pointfinder/test_PointfinderHitHSP.py -> build/lib/staramr/tests/unit/blast/results/pointfinder 2022-05-31T20:51:43,160 creating build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide 2022-05-31T20:51:43,162 copying staramr/tests/unit/blast/results/pointfinder/nucleotide/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide 2022-05-31T20:51:43,165 copying staramr/tests/unit/blast/results/pointfinder/nucleotide/test_NucleotideMutationPosition.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide 2022-05-31T20:51:43,171 creating build/lib/staramr/tests/unit/blast/results/pointfinder/codon 2022-05-31T20:51:43,173 copying staramr/tests/unit/blast/results/pointfinder/codon/test_CodonMutationPosition.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/codon 2022-05-31T20:51:43,183 copying staramr/tests/unit/blast/results/pointfinder/codon/__init__.py -> build/lib/staramr/tests/unit/blast/results/pointfinder/codon 2022-05-31T20:51:43,189 creating build/lib/staramr/tests/integration/detection 2022-05-31T20:51:43,192 copying staramr/tests/integration/detection/test_AMRDetection.py -> build/lib/staramr/tests/integration/detection 2022-05-31T20:51:43,204 copying staramr/tests/integration/detection/__init__.py -> build/lib/staramr/tests/integration/detection 2022-05-31T20:51:43,208 copying staramr/tests/integration/detection/test_AMRDetectionPlasmid.py -> build/lib/staramr/tests/integration/detection 2022-05-31T20:51:43,213 copying staramr/tests/integration/detection/test_AMRDetectionMLST.py -> build/lib/staramr/tests/integration/detection 2022-05-31T20:51:43,221 creating build/lib/staramr/tests/integration/databases 2022-05-31T20:51:43,223 copying staramr/tests/integration/databases/__init__.py -> build/lib/staramr/tests/integration/databases 2022-05-31T20:51:43,229 copying staramr/tests/integration/databases/test_BlastDatabaseRepositories.py -> build/lib/staramr/tests/integration/databases 2022-05-31T20:51:43,235 copying staramr/tests/integration/databases/test_AMRDatabasesManager.py -> build/lib/staramr/tests/integration/databases 2022-05-31T20:51:43,241 creating build/lib/staramr/databases/resistance 2022-05-31T20:51:43,244 copying staramr/databases/resistance/ARGDrugTable.py -> build/lib/staramr/databases/resistance 2022-05-31T20:51:43,248 copying staramr/databases/resistance/__init__.py -> build/lib/staramr/databases/resistance 2022-05-31T20:51:43,252 creating build/lib/staramr/databases/exclude 2022-05-31T20:51:43,254 copying staramr/databases/exclude/__init__.py -> build/lib/staramr/databases/exclude 2022-05-31T20:51:43,258 copying staramr/databases/exclude/ExcludeGenesList.py -> build/lib/staramr/databases/exclude 2022-05-31T20:51:43,265 creating build/lib/staramr/databases/resistance/pointfinder 2022-05-31T20:51:43,268 copying staramr/databases/resistance/pointfinder/ARGDrugTablePointfinder.py -> build/lib/staramr/databases/resistance/pointfinder 2022-05-31T20:51:43,274 copying staramr/databases/resistance/pointfinder/__init__.py -> build/lib/staramr/databases/resistance/pointfinder 2022-05-31T20:51:43,279 creating build/lib/staramr/databases/resistance/resfinder 2022-05-31T20:51:43,281 copying staramr/databases/resistance/resfinder/ARGDrugTableResfinder.py -> build/lib/staramr/databases/resistance/resfinder 2022-05-31T20:51:43,286 copying staramr/databases/resistance/resfinder/__init__.py -> build/lib/staramr/databases/resistance/resfinder 2022-05-31T20:51:43,289 running egg_info 2022-05-31T20:51:43,318 writing dependency_links to staramr.egg-info/dependency_links.txt 2022-05-31T20:51:43,320 writing staramr.egg-info/PKG-INFO 2022-05-31T20:51:43,324 writing top-level names to staramr.egg-info/top_level.txt 2022-05-31T20:51:43,326 writing requirements to staramr.egg-info/requires.txt 2022-05-31T20:51:43,370 reading manifest file 'staramr.egg-info/SOURCES.txt' 2022-05-31T20:51:43,399 reading manifest template 'MANIFEST.in' 2022-05-31T20:51:43,711 writing manifest file 'staramr.egg-info/SOURCES.txt' 2022-05-31T20:51:43,798 creating build/lib/staramr/databases/data 2022-05-31T20:51:43,799 creating build/lib/staramr/databases/data/dist 2022-05-31T20:51:43,802 copying staramr/databases/data/dist/plasmidfinder-info.ini -> build/lib/staramr/databases/data/dist 2022-05-31T20:51:43,808 copying staramr/databases/data/dist/pointfinder-info.ini -> build/lib/staramr/databases/data/dist 2022-05-31T20:51:43,813 copying staramr/databases/data/dist/resfinder-info.ini -> build/lib/staramr/databases/data/dist 2022-05-31T20:51:43,818 creating build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,821 copying staramr/databases/data/dist/plasmidfinder/.gitignore -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,828 copying staramr/databases/data/dist/plasmidfinder/INSTALL.py -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,835 copying staramr/databases/data/dist/plasmidfinder/Inc18.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,847 copying staramr/databases/data/dist/plasmidfinder/NT_Rep.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,854 copying staramr/databases/data/dist/plasmidfinder/Rep1.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,867 copying staramr/databases/data/dist/plasmidfinder/Rep2.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,876 copying staramr/databases/data/dist/plasmidfinder/Rep3.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,888 copying staramr/databases/data/dist/plasmidfinder/RepA_N.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,902 copying staramr/databases/data/dist/plasmidfinder/RepL.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,910 copying staramr/databases/data/dist/plasmidfinder/Rep_trans.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,922 copying staramr/databases/data/dist/plasmidfinder/config -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,929 copying staramr/databases/data/dist/plasmidfinder/enterobacteriales.fsa -> build/lib/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:43,943 creating build/lib/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:43,948 copying staramr/databases/data/dist/pointfinder/.gitignore -> build/lib/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:43,956 copying staramr/databases/data/dist/pointfinder/INSTALL.py -> build/lib/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:43,965 copying staramr/databases/data/dist/pointfinder/README.md -> build/lib/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:43,972 copying staramr/databases/data/dist/pointfinder/config -> build/lib/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:43,978 creating build/lib/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:43,981 copying staramr/databases/data/dist/pointfinder/campylobacter/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:43,989 copying staramr/databases/data/dist/pointfinder/campylobacter/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:43,997 copying staramr/databases/data/dist/pointfinder/campylobacter/cmeR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:44,006 copying staramr/databases/data/dist/pointfinder/campylobacter/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:44,012 copying staramr/databases/data/dist/pointfinder/campylobacter/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:44,018 copying staramr/databases/data/dist/pointfinder/campylobacter/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:44,024 copying staramr/databases/data/dist/pointfinder/campylobacter/rpsL.fsa -> build/lib/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:44,030 creating build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:44,033 copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:44,039 copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:44,045 copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:44,053 copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:44,062 copying staramr/databases/data/dist/pointfinder/enterococcus_faecalis/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:44,069 creating build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:44,072 copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:44,078 copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:44,084 copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:44,092 copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:44,101 copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/pbp5.fsa -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:44,109 copying staramr/databases/data/dist/pointfinder/enterococcus_faecium/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:44,115 creating build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,118 copying staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,125 copying staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,133 copying staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsH.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,142 copying staramr/databases/data/dist/pointfinder/escherichia_coli/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,150 copying staramr/databases/data/dist/pointfinder/escherichia_coli/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,156 copying staramr/databases/data/dist/pointfinder/escherichia_coli/ampC_promoter_size_53bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,161 copying staramr/databases/data/dist/pointfinder/escherichia_coli/folP.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,166 copying staramr/databases/data/dist/pointfinder/escherichia_coli/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,173 copying staramr/databases/data/dist/pointfinder/escherichia_coli/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,180 copying staramr/databases/data/dist/pointfinder/escherichia_coli/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,187 copying staramr/databases/data/dist/pointfinder/escherichia_coli/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,195 copying staramr/databases/data/dist/pointfinder/escherichia_coli/parE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,202 copying staramr/databases/data/dist/pointfinder/escherichia_coli/pmrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,209 copying staramr/databases/data/dist/pointfinder/escherichia_coli/pmrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,216 copying staramr/databases/data/dist/pointfinder/escherichia_coli/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,225 copying staramr/databases/data/dist/pointfinder/escherichia_coli/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:44,233 creating build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:44,236 copying staramr/databases/data/dist/pointfinder/helicobacter_pylori/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:44,242 copying staramr/databases/data/dist/pointfinder/helicobacter_pylori/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:44,249 copying staramr/databases/data/dist/pointfinder/helicobacter_pylori/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:44,257 copying staramr/databases/data/dist/pointfinder/helicobacter_pylori/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:44,265 creating build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,268 copying staramr/databases/data/dist/pointfinder/klebsiella/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,275 copying staramr/databases/data/dist/pointfinder/klebsiella/acrR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,282 copying staramr/databases/data/dist/pointfinder/klebsiella/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,289 copying staramr/databases/data/dist/pointfinder/klebsiella/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,297 copying staramr/databases/data/dist/pointfinder/klebsiella/ompK35.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,304 copying staramr/databases/data/dist/pointfinder/klebsiella/ompK36.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,311 copying staramr/databases/data/dist/pointfinder/klebsiella/ompK37.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,318 copying staramr/databases/data/dist/pointfinder/klebsiella/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,325 copying staramr/databases/data/dist/pointfinder/klebsiella/ramR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,333 copying staramr/databases/data/dist/pointfinder/klebsiella/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:44,341 creating build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,343 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,351 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/Rv0678.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,358 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ahpC_promoter_size_180bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,366 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/alr.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,373 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/drrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,381 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/eis_promoter_size_119bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,388 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embA_promoter_size_115bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,396 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,403 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,411 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,418 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethA_promoter_size_74bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,425 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,432 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/fabG1_promoter_size_223bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,439 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/folC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,447 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,454 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gidB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,461 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,468 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,475 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/idsA2_promoter_size_181bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,481 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/inhA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,488 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/iniA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,495 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/kasA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,499 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/katG_promoter_size_107bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,504 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/nuoA_promoter_size_365bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,509 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/panD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,514 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/pncA_promoter_size_107bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,520 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,533 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ribD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,539 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rplC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,546 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,553 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,559 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,564 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsL.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,568 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrl.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,573 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrs.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,579 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,585 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyX_promoter_size_259bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,592 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/tlyA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,599 copying staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ubiA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:44,605 creating build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,608 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/16S_rRNA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,615 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a1.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,620 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a2.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,625 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a3.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,629 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a4.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,635 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,640 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,647 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,653 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/macAB_promoter_size_225bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,659 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrC_promoter_size_174bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,664 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrR_promoter_size_66bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,668 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,673 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/penA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,678 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/pilQ.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,685 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/ponA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,692 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/porB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,698 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,704 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,709 copying staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsJ.fsa -> build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:44,713 creating build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,715 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/CRT.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,721 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHFR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,727 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHPS.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,734 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/K13.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,740 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/MDR.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,746 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/PIP.fsa -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,751 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,755 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/config -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,760 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,766 copying staramr/databases/data/dist/pointfinder/plasmodium_falciparum/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:44,772 creating build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,775 copying staramr/databases/data/dist/pointfinder/salmonella/16S_rrsD.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,782 copying staramr/databases/data/dist/pointfinder/salmonella/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,786 copying staramr/databases/data/dist/pointfinder/salmonella/acrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,791 copying staramr/databases/data/dist/pointfinder/salmonella/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,796 copying staramr/databases/data/dist/pointfinder/salmonella/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,801 copying staramr/databases/data/dist/pointfinder/salmonella/gyrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,807 copying staramr/databases/data/dist/pointfinder/salmonella/parC.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,814 copying staramr/databases/data/dist/pointfinder/salmonella/parE.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,820 copying staramr/databases/data/dist/pointfinder/salmonella/pmrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,825 copying staramr/databases/data/dist/pointfinder/salmonella/pmrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,830 copying staramr/databases/data/dist/pointfinder/salmonella/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:44,835 creating build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,837 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/23S.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,843 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/RNA_genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,849 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/dfrB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,856 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/fusA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,862 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/genes.txt -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,867 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,872 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,877 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/gyrA.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,881 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/ileS.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,888 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp2.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,895 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,901 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4_promoter_size_304bp.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,906 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/resistens-overview.txt -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,912 copying staramr/databases/data/dist/pointfinder/staphylococcus_aureus/rpoB.fsa -> build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:44,917 creating build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:44,919 copying staramr/databases/data/dist/resfinder/.gitignore -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:44,925 copying staramr/databases/data/dist/resfinder/CHECK-entries.sh -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:44,931 copying staramr/databases/data/dist/resfinder/INSTALL.py -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:44,938 copying staramr/databases/data/dist/resfinder/README.md -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:44,946 copying staramr/databases/data/dist/resfinder/aminoglycoside.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:44,972 copying staramr/databases/data/dist/resfinder/antibiotic_classes.txt -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:44,979 copying staramr/databases/data/dist/resfinder/beta-lactam.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,160 copying staramr/databases/data/dist/resfinder/colistin.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,175 copying staramr/databases/data/dist/resfinder/config -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,181 copying staramr/databases/data/dist/resfinder/disinfectant.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,191 copying staramr/databases/data/dist/resfinder/fosfomycin.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,200 copying staramr/databases/data/dist/resfinder/fusidicacid.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,207 copying staramr/databases/data/dist/resfinder/glycopeptide.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,222 copying staramr/databases/data/dist/resfinder/history.txt -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,231 copying staramr/databases/data/dist/resfinder/macrolide.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,254 copying staramr/databases/data/dist/resfinder/nitroimidazole.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,260 copying staramr/databases/data/dist/resfinder/notes.txt -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,274 copying staramr/databases/data/dist/resfinder/oxazolidinone.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,285 copying staramr/databases/data/dist/resfinder/phenicol.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,297 copying staramr/databases/data/dist/resfinder/phenotype_panels.txt -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,302 copying staramr/databases/data/dist/resfinder/phenotypes.txt -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,355 copying staramr/databases/data/dist/resfinder/pseudomonicacid.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,364 copying staramr/databases/data/dist/resfinder/quinolone.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,380 copying staramr/databases/data/dist/resfinder/rifampicin.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,388 copying staramr/databases/data/dist/resfinder/sulphonamide.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,399 copying staramr/databases/data/dist/resfinder/tetracycline.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,429 copying staramr/databases/data/dist/resfinder/trimethoprim.fsa -> build/lib/staramr/databases/data/dist/resfinder 2022-05-31T20:51:45,441 creating build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,444 copying staramr/tests/unit/data/test-Genome-Size-Exactly-Maximum.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,451 copying staramr/tests/unit/data/test-Genome-Size-Exactly-Minimum.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,457 copying staramr/tests/unit/data/test-Genome-Size-Larger-Than-Maximum.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,462 copying staramr/tests/unit/data/test-Genome-Size-Smaller-Than-Minimum.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,467 copying staramr/tests/unit/data/test-Genome-Size-Unaffected-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,471 copying staramr/tests/unit/data/test-Genome-Size-Within-Accepted-Range.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,476 copying staramr/tests/unit/data/test-N50-Calculation.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,482 copying staramr/tests/unit/data/test-N50-Exactly-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,488 copying staramr/tests/unit/data/test-N50-Much-Larger-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,496 copying staramr/tests/unit/data/test-N50-One-BP-Larger-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,503 copying staramr/tests/unit/data/test-N50-Smaller-Than-Minimum-Value.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,509 copying staramr/tests/unit/data/test-N50-Unaffected-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,515 copying staramr/tests/unit/data/test-NC-Exactly-Unacceptable.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,522 copying staramr/tests/unit/data/test-NC-One-Under-Unacceptable.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,529 copying staramr/tests/unit/data/test-NC-Unacceptable-By-Empty-Contigs.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,536 copying staramr/tests/unit/data/test-NCO-Much-Higher-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,546 copying staramr/tests/unit/data/test-NCO-Much-Lower-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,551 copying staramr/tests/unit/data/test-NCO-One-Under-Unacceptable.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,556 copying staramr/tests/unit/data/test-NCU-Exactly-Unacceptable.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,562 copying staramr/tests/unit/data/test-NCU-Much-Higher-Than-Unacceptable.fasta -> build/lib/staramr/tests/unit/data 2022-05-31T20:51:45,568 creating build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,571 copying staramr/tests/integration/data/16S-rc_gyrA-rc_beta-lactam.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,579 copying staramr/tests/integration/data/16S_gyrA_beta-lactam.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,586 copying staramr/tests/integration/data/16S_rrsD-1T1065.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,593 copying staramr/tests/integration/data/23S-A2075G.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,600 copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle-rc.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,605 copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,610 copying staramr/tests/integration/data/beta-lactam-blaIMP-42-del-start.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,615 copying staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-middle.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,621 copying staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-start.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,628 copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies-one-rev-complement.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,635 copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,641 copying staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,646 copying staramr/tests/integration/data/gyrA-A67P-del-end.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,652 copying staramr/tests/integration/data/gyrA-A67P-rc.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,657 copying staramr/tests/integration/data/gyrA-A67P.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,663 copying staramr/tests/integration/data/gyrA-A67T.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,670 copying staramr/tests/integration/data/gyrA-A70T.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,677 copying staramr/tests/integration/data/gyrA-S83I.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,684 copying staramr/tests/integration/data/gyrA-S83R.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,689 copying staramr/tests/integration/data/gyrA-S97N.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,694 copying staramr/tests/integration/data/non-match.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,699 copying staramr/tests/integration/data/pbp5-ins-466.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,705 copying staramr/tests/integration/data/resfinder_beta-lactam-blaIMP-42-del-middle.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,712 copying staramr/tests/integration/data/test-aminoglycoside.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,719 copying staramr/tests/integration/data/test-detailed-summary.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,725 copying staramr/tests/integration/data/test-index-range-plasmid.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,730 copying staramr/tests/integration/data/test-mlst-summary.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,735 copying staramr/tests/integration/data/test-plasmids-seq.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,740 copying staramr/tests/integration/data/test-resfinder-correct-seq.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,747 copying staramr/tests/integration/data/test-resistance-plasmid.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,754 copying staramr/tests/integration/data/test-seq-id.fsa -> build/lib/staramr/tests/integration/data 2022-05-31T20:51:45,761 creating build/lib/staramr/tests/integration/data/gene-drug-tables 2022-05-31T20:51:45,764 copying staramr/tests/integration/data/gene-drug-tables/drug_key_pointfinder_invalid.tsv -> build/lib/staramr/tests/integration/data/gene-drug-tables 2022-05-31T20:51:45,769 copying staramr/tests/integration/data/gene-drug-tables/drug_key_resfinder_invalid.tsv -> build/lib/staramr/tests/integration/data/gene-drug-tables 2022-05-31T20:51:45,773 creating build/lib/staramr/databases/resistance/data 2022-05-31T20:51:45,775 copying staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv -> build/lib/staramr/databases/resistance/data 2022-05-31T20:51:45,781 copying staramr/databases/resistance/data/ARG_drug_key_resfinder.tsv -> build/lib/staramr/databases/resistance/data 2022-05-31T20:51:45,804 copying staramr/databases/resistance/data/info.ini -> build/lib/staramr/databases/resistance/data 2022-05-31T20:51:45,811 creating build/lib/staramr/databases/exclude/data 2022-05-31T20:51:45,813 copying staramr/databases/exclude/data/genes_to_exclude.tsv -> build/lib/staramr/databases/exclude/data 2022-05-31T20:51:45,858 running build_scripts 2022-05-31T20:51:45,859 creating build/scripts-3.5 2022-05-31T20:51:45,862 copying and adjusting bin/staramr -> build/scripts-3.5 2022-05-31T20:51:45,865 changing mode of build/scripts-3.5/staramr from 644 to 755 2022-05-31T20:51:45,872 installing to build/bdist.linux-armv7l/wheel 2022-05-31T20:51:45,873 running install 2022-05-31T20:51:45,875 running install_lib 2022-05-31T20:51:45,883 creating build/bdist.linux-armv7l 2022-05-31T20:51:45,884 creating build/bdist.linux-armv7l/wheel 2022-05-31T20:51:45,887 creating build/bdist.linux-armv7l/wheel/staramr 2022-05-31T20:51:45,891 creating build/bdist.linux-armv7l/wheel/staramr/blast 2022-05-31T20:51:45,894 creating build/bdist.linux-armv7l/wheel/staramr/blast/pointfinder 2022-05-31T20:51:45,896 copying build/lib/staramr/blast/pointfinder/PointfinderBlastDatabase.py -> build/bdist.linux-armv7l/wheel/staramr/blast/pointfinder 2022-05-31T20:51:45,901 copying build/lib/staramr/blast/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/pointfinder 2022-05-31T20:51:45,905 copying build/lib/staramr/blast/pointfinder/PointfinderDatabaseInfo.py -> build/bdist.linux-armv7l/wheel/staramr/blast/pointfinder 2022-05-31T20:51:45,912 creating build/bdist.linux-armv7l/wheel/staramr/blast/resfinder 2022-05-31T20:51:45,914 copying build/lib/staramr/blast/resfinder/ResfinderBlastDatabase.py -> build/bdist.linux-armv7l/wheel/staramr/blast/resfinder 2022-05-31T20:51:45,920 copying build/lib/staramr/blast/resfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/resfinder 2022-05-31T20:51:45,925 copying build/lib/staramr/blast/AbstractBlastDatabase.py -> build/bdist.linux-armv7l/wheel/staramr/blast 2022-05-31T20:51:45,931 copying build/lib/staramr/blast/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast 2022-05-31T20:51:45,935 creating build/bdist.linux-armv7l/wheel/staramr/blast/results 2022-05-31T20:51:45,938 creating build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder 2022-05-31T20:51:45,941 creating build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide 2022-05-31T20:51:45,943 copying build/lib/staramr/blast/results/pointfinder/nucleotide/PointfinderHitHSPRNA.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide 2022-05-31T20:51:45,948 copying build/lib/staramr/blast/results/pointfinder/nucleotide/NucleotideMutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide 2022-05-31T20:51:45,952 copying build/lib/staramr/blast/results/pointfinder/nucleotide/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/nucleotide 2022-05-31T20:51:45,955 copying build/lib/staramr/blast/results/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder 2022-05-31T20:51:45,958 copying build/lib/staramr/blast/results/pointfinder/PointfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder 2022-05-31T20:51:45,963 copying build/lib/staramr/blast/results/pointfinder/BlastResultsParserPointfinderResistance.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder 2022-05-31T20:51:45,968 creating build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/codon 2022-05-31T20:51:45,970 copying build/lib/staramr/blast/results/pointfinder/codon/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/codon 2022-05-31T20:51:45,975 copying build/lib/staramr/blast/results/pointfinder/codon/CodonMutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder/codon 2022-05-31T20:51:45,981 copying build/lib/staramr/blast/results/pointfinder/BlastResultsParserPointfinder.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder 2022-05-31T20:51:45,988 copying build/lib/staramr/blast/results/pointfinder/MutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/pointfinder 2022-05-31T20:51:45,993 copying build/lib/staramr/blast/results/AMRHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results 2022-05-31T20:51:45,999 creating build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder 2022-05-31T20:51:46,001 copying build/lib/staramr/blast/results/resfinder/BlastResultsParserResfinder.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder 2022-05-31T20:51:46,005 copying build/lib/staramr/blast/results/resfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder 2022-05-31T20:51:46,009 copying build/lib/staramr/blast/results/resfinder/ResfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder 2022-05-31T20:51:46,014 copying build/lib/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/resfinder 2022-05-31T20:51:46,020 copying build/lib/staramr/blast/results/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results 2022-05-31T20:51:46,026 creating build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder 2022-05-31T20:51:46,028 copying build/lib/staramr/blast/results/plasmidfinder/PlasmidfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder 2022-05-31T20:51:46,035 copying build/lib/staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinderResistance.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder 2022-05-31T20:51:46,040 copying build/lib/staramr/blast/results/plasmidfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder 2022-05-31T20:51:46,045 copying build/lib/staramr/blast/results/plasmidfinder/BlastResultsParserPlasmidfinder.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results/plasmidfinder 2022-05-31T20:51:46,050 copying build/lib/staramr/blast/results/BlastHitPartitions.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results 2022-05-31T20:51:46,055 copying build/lib/staramr/blast/results/BlastResultsParser.py -> build/bdist.linux-armv7l/wheel/staramr/blast/results 2022-05-31T20:51:46,060 copying build/lib/staramr/blast/JobHandler.py -> build/bdist.linux-armv7l/wheel/staramr/blast 2022-05-31T20:51:46,066 creating build/bdist.linux-armv7l/wheel/staramr/blast/plasmidfinder 2022-05-31T20:51:46,068 copying build/lib/staramr/blast/plasmidfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/blast/plasmidfinder 2022-05-31T20:51:46,072 copying build/lib/staramr/blast/plasmidfinder/PlasmidfinderBlastDatabase.py -> build/bdist.linux-armv7l/wheel/staramr/blast/plasmidfinder 2022-05-31T20:51:46,078 copying build/lib/staramr/SubCommand.py -> build/bdist.linux-armv7l/wheel/staramr 2022-05-31T20:51:46,083 copying build/lib/staramr/Utils.py -> build/bdist.linux-armv7l/wheel/staramr 2022-05-31T20:51:46,090 creating build/bdist.linux-armv7l/wheel/staramr/tests 2022-05-31T20:51:46,092 copying build/lib/staramr/tests/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests 2022-05-31T20:51:46,097 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit 2022-05-31T20:51:46,100 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast 2022-05-31T20:51:46,104 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/pointfinder 2022-05-31T20:51:46,106 copying build/lib/staramr/tests/unit/blast/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/pointfinder 2022-05-31T20:51:46,109 copying build/lib/staramr/tests/unit/blast/pointfinder/test_PointfinderDatabaseInfo.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/pointfinder 2022-05-31T20:51:46,115 copying build/lib/staramr/tests/unit/blast/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast 2022-05-31T20:51:46,121 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results 2022-05-31T20:51:46,126 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder 2022-05-31T20:51:46,131 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide 2022-05-31T20:51:46,133 copying build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide 2022-05-31T20:51:46,137 copying build/lib/staramr/tests/unit/blast/results/pointfinder/nucleotide/test_NucleotideMutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/nucleotide 2022-05-31T20:51:46,142 copying build/lib/staramr/tests/unit/blast/results/pointfinder/test_PlasmidfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder 2022-05-31T20:51:46,147 copying build/lib/staramr/tests/unit/blast/results/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder 2022-05-31T20:51:46,152 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/codon 2022-05-31T20:51:46,153 copying build/lib/staramr/tests/unit/blast/results/pointfinder/codon/test_CodonMutationPosition.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/codon 2022-05-31T20:51:46,163 copying build/lib/staramr/tests/unit/blast/results/pointfinder/codon/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder/codon 2022-05-31T20:51:46,168 copying build/lib/staramr/tests/unit/blast/results/pointfinder/test_PointfinderHitHSP.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results/pointfinder 2022-05-31T20:51:46,173 copying build/lib/staramr/tests/unit/blast/results/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results 2022-05-31T20:51:46,178 copying build/lib/staramr/tests/unit/blast/results/test_BlastHitPartitions.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/blast/results 2022-05-31T20:51:46,188 copying build/lib/staramr/tests/unit/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit 2022-05-31T20:51:46,195 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,198 copying build/lib/staramr/tests/unit/data/test-Genome-Size-Unaffected-By-Empty-Contigs.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,204 copying build/lib/staramr/tests/unit/data/test-NCU-Exactly-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,210 copying build/lib/staramr/tests/unit/data/test-NC-One-Under-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,215 copying build/lib/staramr/tests/unit/data/test-N50-Exactly-Minimum-Value.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,221 copying build/lib/staramr/tests/unit/data/test-NCO-One-Under-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,227 copying build/lib/staramr/tests/unit/data/test-NC-Unacceptable-By-Empty-Contigs.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,232 copying build/lib/staramr/tests/unit/data/test-Genome-Size-Exactly-Minimum.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,237 copying build/lib/staramr/tests/unit/data/test-N50-Much-Larger-Than-Minimum-Value.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,242 copying build/lib/staramr/tests/unit/data/test-NCO-Much-Lower-Than-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,246 copying build/lib/staramr/tests/unit/data/test-NCU-Much-Higher-Than-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,251 copying build/lib/staramr/tests/unit/data/test-N50-Unaffected-By-Empty-Contigs.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,255 copying build/lib/staramr/tests/unit/data/test-NC-Exactly-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,260 copying build/lib/staramr/tests/unit/data/test-Genome-Size-Within-Accepted-Range.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,266 copying build/lib/staramr/tests/unit/data/test-N50-One-BP-Larger-Than-Minimum-Value.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,271 copying build/lib/staramr/tests/unit/data/test-Genome-Size-Larger-Than-Maximum.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,277 copying build/lib/staramr/tests/unit/data/test-Genome-Size-Exactly-Maximum.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,282 copying build/lib/staramr/tests/unit/data/test-Genome-Size-Smaller-Than-Minimum.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,287 copying build/lib/staramr/tests/unit/data/test-N50-Smaller-Than-Minimum-Value.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,293 copying build/lib/staramr/tests/unit/data/test-NCO-Much-Higher-Than-Unacceptable.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,302 copying build/lib/staramr/tests/unit/data/test-N50-Calculation.fasta -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/data 2022-05-31T20:51:46,307 creating build/bdist.linux-armv7l/wheel/staramr/tests/unit/results 2022-05-31T20:51:46,309 copying build/lib/staramr/tests/unit/results/test_AMRDetectionSummary.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/results 2022-05-31T20:51:46,319 copying build/lib/staramr/tests/unit/results/test_QualityModule.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/results 2022-05-31T20:51:46,327 copying build/lib/staramr/tests/unit/results/test_AMRDetectionSummaryResistance.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/results 2022-05-31T20:51:46,334 copying build/lib/staramr/tests/unit/results/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/unit/results 2022-05-31T20:51:46,340 creating build/bdist.linux-armv7l/wheel/staramr/tests/integration 2022-05-31T20:51:46,341 copying build/lib/staramr/tests/integration/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration 2022-05-31T20:51:46,347 creating build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,349 copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-middle.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,354 copying build/lib/staramr/tests/integration/data/pbp5-ins-466.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,358 copying build/lib/staramr/tests/integration/data/test-seq-id.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,364 copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies-one-rev-complement.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,370 copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle-rc.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,375 copying build/lib/staramr/tests/integration/data/test-detailed-summary.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,381 copying build/lib/staramr/tests/integration/data/test-resistance-plasmid.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,387 copying build/lib/staramr/tests/integration/data/test-plasmids-seq.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,392 copying build/lib/staramr/tests/integration/data/16S-rc_gyrA-rc_beta-lactam.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,399 copying build/lib/staramr/tests/integration/data/test-mlst-summary.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,403 copying build/lib/staramr/tests/integration/data/16S_gyrA_beta-lactam.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,409 copying build/lib/staramr/tests/integration/data/gyrA-S97N.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,413 copying build/lib/staramr/tests/integration/data/23S-A2075G.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,417 copying build/lib/staramr/tests/integration/data/gyrA-A67P-rc.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,422 copying build/lib/staramr/tests/integration/data/test-index-range-plasmid.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,428 copying build/lib/staramr/tests/integration/data/gyrA-A67T.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,434 copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-start.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,439 copying build/lib/staramr/tests/integration/data/test-aminoglycoside.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,444 copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2-two-copies.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,450 copying build/lib/staramr/tests/integration/data/non-match.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,456 copying build/lib/staramr/tests/integration/data/gyrA-A70T.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,461 copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-mut-2.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,467 copying build/lib/staramr/tests/integration/data/resfinder_beta-lactam-blaIMP-42-del-middle.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,472 copying build/lib/staramr/tests/integration/data/gyrA-A67P-del-end.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,478 copying build/lib/staramr/tests/integration/data/gyrA-A67P.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,484 copying build/lib/staramr/tests/integration/data/test-resfinder-correct-seq.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,491 copying build/lib/staramr/tests/integration/data/gyrA-S83I.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,498 creating build/bdist.linux-armv7l/wheel/staramr/tests/integration/data/gene-drug-tables 2022-05-31T20:51:46,500 copying build/lib/staramr/tests/integration/data/gene-drug-tables/drug_key_pointfinder_invalid.tsv -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data/gene-drug-tables 2022-05-31T20:51:46,506 copying build/lib/staramr/tests/integration/data/gene-drug-tables/drug_key_resfinder_invalid.tsv -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data/gene-drug-tables 2022-05-31T20:51:46,512 copying build/lib/staramr/tests/integration/data/16S_rrsD-1T1065.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,517 copying build/lib/staramr/tests/integration/data/gyrA-S83R.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,523 copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-ins-start.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,529 copying build/lib/staramr/tests/integration/data/beta-lactam-blaIMP-42-del-middle.fsa -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/data 2022-05-31T20:51:46,536 creating build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection 2022-05-31T20:51:46,538 copying build/lib/staramr/tests/integration/detection/test_AMRDetection.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection 2022-05-31T20:51:46,551 copying build/lib/staramr/tests/integration/detection/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection 2022-05-31T20:51:46,554 copying build/lib/staramr/tests/integration/detection/test_AMRDetectionPlasmid.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection 2022-05-31T20:51:46,560 copying build/lib/staramr/tests/integration/detection/test_AMRDetectionMLST.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/detection 2022-05-31T20:51:46,567 creating build/bdist.linux-armv7l/wheel/staramr/tests/integration/databases 2022-05-31T20:51:46,570 copying build/lib/staramr/tests/integration/databases/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/databases 2022-05-31T20:51:46,575 copying build/lib/staramr/tests/integration/databases/test_BlastDatabaseRepositories.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/databases 2022-05-31T20:51:46,581 copying build/lib/staramr/tests/integration/databases/test_AMRDatabasesManager.py -> build/bdist.linux-armv7l/wheel/staramr/tests/integration/databases 2022-05-31T20:51:46,588 copying build/lib/staramr/__init__.py -> build/bdist.linux-armv7l/wheel/staramr 2022-05-31T20:51:46,595 creating build/bdist.linux-armv7l/wheel/staramr/subcommand 2022-05-31T20:51:46,598 copying build/lib/staramr/subcommand/Search.py -> build/bdist.linux-armv7l/wheel/staramr/subcommand 2022-05-31T20:51:46,608 copying build/lib/staramr/subcommand/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/subcommand 2022-05-31T20:51:46,612 copying build/lib/staramr/subcommand/Database.py -> build/bdist.linux-armv7l/wheel/staramr/subcommand 2022-05-31T20:51:46,621 creating build/bdist.linux-armv7l/wheel/staramr/exceptions 2022-05-31T20:51:46,624 copying build/lib/staramr/exceptions/BlastProcessError.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions 2022-05-31T20:51:46,628 copying build/lib/staramr/exceptions/DatabaseNotFoundException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions 2022-05-31T20:51:46,632 copying build/lib/staramr/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions 2022-05-31T20:51:46,635 copying build/lib/staramr/exceptions/InvalidPositionException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions 2022-05-31T20:51:46,639 copying build/lib/staramr/exceptions/CommandParseException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions 2022-05-31T20:51:46,643 copying build/lib/staramr/exceptions/GenotypePhenotypeMatchException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions 2022-05-31T20:51:46,648 copying build/lib/staramr/exceptions/DatabaseErrorException.py -> build/bdist.linux-armv7l/wheel/staramr/exceptions 2022-05-31T20:51:46,655 creating build/bdist.linux-armv7l/wheel/staramr/results 2022-05-31T20:51:46,658 copying build/lib/staramr/results/QualityModule.py -> build/bdist.linux-armv7l/wheel/staramr/results 2022-05-31T20:51:46,666 copying build/lib/staramr/results/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/results 2022-05-31T20:51:46,671 copying build/lib/staramr/results/AMRDetectionSummary.py -> build/bdist.linux-armv7l/wheel/staramr/results 2022-05-31T20:51:46,678 copying build/lib/staramr/results/AMRDetectionSummaryResistance.py -> build/bdist.linux-armv7l/wheel/staramr/results 2022-05-31T20:51:46,685 creating build/bdist.linux-armv7l/wheel/staramr/detection 2022-05-31T20:51:46,687 copying build/lib/staramr/detection/AMRDetection.py -> build/bdist.linux-armv7l/wheel/staramr/detection 2022-05-31T20:51:46,696 copying build/lib/staramr/detection/AMRDetectionResistance.py -> build/bdist.linux-armv7l/wheel/staramr/detection 2022-05-31T20:51:46,702 copying build/lib/staramr/detection/AMRDetectionFactory.py -> build/bdist.linux-armv7l/wheel/staramr/detection 2022-05-31T20:51:46,708 copying build/lib/staramr/detection/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/detection 2022-05-31T20:51:46,714 creating build/bdist.linux-armv7l/wheel/staramr/databases 2022-05-31T20:51:46,718 creating build/bdist.linux-armv7l/wheel/staramr/databases/resistance 2022-05-31T20:51:46,723 creating build/bdist.linux-armv7l/wheel/staramr/databases/resistance/pointfinder 2022-05-31T20:51:46,726 copying build/lib/staramr/databases/resistance/pointfinder/ARGDrugTablePointfinder.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/pointfinder 2022-05-31T20:51:46,730 copying build/lib/staramr/databases/resistance/pointfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/pointfinder 2022-05-31T20:51:46,735 creating build/bdist.linux-armv7l/wheel/staramr/databases/resistance/resfinder 2022-05-31T20:51:46,736 copying build/lib/staramr/databases/resistance/resfinder/ARGDrugTableResfinder.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/resfinder 2022-05-31T20:51:46,741 copying build/lib/staramr/databases/resistance/resfinder/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/resfinder 2022-05-31T20:51:46,744 copying build/lib/staramr/databases/resistance/ARGDrugTable.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance 2022-05-31T20:51:46,749 copying build/lib/staramr/databases/resistance/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance 2022-05-31T20:51:46,755 creating build/bdist.linux-armv7l/wheel/staramr/databases/resistance/data 2022-05-31T20:51:46,758 copying build/lib/staramr/databases/resistance/data/ARG_drug_key_resfinder.tsv -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/data 2022-05-31T20:51:46,780 copying build/lib/staramr/databases/resistance/data/info.ini -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/data 2022-05-31T20:51:46,784 copying build/lib/staramr/databases/resistance/data/ARG_drug_key_pointfinder.tsv -> build/bdist.linux-armv7l/wheel/staramr/databases/resistance/data 2022-05-31T20:51:46,790 copying build/lib/staramr/databases/BlastDatabaseRepositories.py -> build/bdist.linux-armv7l/wheel/staramr/databases 2022-05-31T20:51:46,796 copying build/lib/staramr/databases/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases 2022-05-31T20:51:46,802 creating build/bdist.linux-armv7l/wheel/staramr/databases/data 2022-05-31T20:51:46,807 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist 2022-05-31T20:51:46,811 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:46,813 copying build/lib/staramr/databases/data/dist/pointfinder/README.md -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:46,820 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,822 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,827 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,832 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,838 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,844 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/parE.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,850 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/acrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,856 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/pmrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,862 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,868 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/pmrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,873 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/gyrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,879 copying build/lib/staramr/databases/data/dist/pointfinder/salmonella/16S_rrsD.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/salmonella 2022-05-31T20:51:46,884 copying build/lib/staramr/databases/data/dist/pointfinder/INSTALL.py -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:46,892 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,895 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,901 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/porB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,906 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsJ.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,912 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,917 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,923 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,930 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/penA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,936 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a4.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,941 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a3.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,947 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,952 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/ponA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,957 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a2.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,961 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/pilQ.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,965 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/rpsE.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,969 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/macAB_promoter_size_225bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,975 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrC_promoter_size_174bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,980 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/16S_rRNA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,986 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/mtrR_promoter_size_66bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,992 copying build/lib/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae/23S_rRNA_a1.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/neisseria_gonorrhoeae 2022-05-31T20:51:46,997 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:46,999 copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:47,003 copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:47,007 copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:47,012 copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:47,017 copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/cmeR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:47,023 copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/rpsL.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:47,028 copying build/lib/staramr/databases/data/dist/pointfinder/campylobacter/23S.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/campylobacter 2022-05-31T20:51:47,035 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,037 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,041 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,045 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,050 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,056 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,062 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4_promoter_size_304bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,067 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/rpoB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,073 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp4.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,079 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/dfrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,084 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/ileS.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,090 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/grlA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,095 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/fusA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,100 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/pbp2.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,104 copying build/lib/staramr/databases/data/dist/pointfinder/staphylococcus_aureus/23S.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/staphylococcus_aureus 2022-05-31T20:51:47,109 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:47,111 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:47,116 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:47,121 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:47,127 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:47,133 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:47,137 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecium/pbp5.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecium 2022-05-31T20:51:47,143 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,144 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,149 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/PIP.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,153 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,157 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,163 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHFR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,168 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/MDR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,175 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/config -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,179 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/K13.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,189 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/CRT.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,193 copying build/lib/staramr/databases/data/dist/pointfinder/plasmodium_falciparum/DHPS.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/plasmodium_falciparum 2022-05-31T20:51:47,200 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,203 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/folP.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,209 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/ampC_promoter_size_53bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,214 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,219 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsH.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,223 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,227 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,231 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,237 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/parE.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,243 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/pmrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,249 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,254 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/rpoB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,259 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,263 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/pmrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,267 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/gyrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,271 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/16S_rrsC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,275 copying build/lib/staramr/databases/data/dist/pointfinder/escherichia_coli/23S.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/escherichia_coli 2022-05-31T20:51:47,283 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:47,285 copying build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:47,291 copying build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:47,296 copying build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:47,300 copying build/lib/staramr/databases/data/dist/pointfinder/helicobacter_pylori/rpoB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/helicobacter_pylori 2022-05-31T20:51:47,307 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,309 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,313 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,316 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/acrR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,321 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,327 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,334 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/ompK36.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,339 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/ramR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,343 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/ompK37.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,347 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,352 copying build/lib/staramr/databases/data/dist/pointfinder/klebsiella/ompK35.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/klebsiella 2022-05-31T20:51:47,356 copying build/lib/staramr/databases/data/dist/pointfinder/config -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:47,363 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:47,366 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:47,372 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:47,376 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:47,381 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:47,385 copying build/lib/staramr/databases/data/dist/pointfinder/enterococcus_faecalis/parC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/enterococcus_faecalis 2022-05-31T20:51:47,389 copying build/lib/staramr/databases/data/dist/pointfinder/.gitignore -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder 2022-05-31T20:51:47,396 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,397 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,403 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,409 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,415 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/idsA2_promoter_size_181bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,420 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/drrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,424 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/kasA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,428 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/RNA_genes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,432 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/pncA_promoter_size_107bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,436 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/fabG1_promoter_size_223bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,440 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyX_promoter_size_259bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,446 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embA_promoter_size_115bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,452 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,458 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/alr.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,463 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/resistens-overview.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,473 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gidB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,477 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/iniA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,482 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ribD.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,487 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/folC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,493 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/katG_promoter_size_107bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,498 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/Rv0678.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,503 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,508 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethA_promoter_size_74bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,512 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/eis_promoter_size_119bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,516 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,520 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpoB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,526 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrl.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,532 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/panD.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,537 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rpsL.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,542 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/gyrB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,546 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ahpC_promoter_size_180bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,550 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/tlyA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,554 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/nuoA_promoter_size_365bp.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,559 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ethR.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,563 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/thyA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,569 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rrs.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,575 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/ubiA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,580 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/rplC.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,585 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/inhA.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,588 copying build/lib/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis/embB.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/pointfinder/mycobacterium_tuberculosis 2022-05-31T20:51:47,595 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,597 copying build/lib/staramr/databases/data/dist/resfinder/rifampicin.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,602 copying build/lib/staramr/databases/data/dist/resfinder/notes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,617 copying build/lib/staramr/databases/data/dist/resfinder/antibiotic_classes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,624 copying build/lib/staramr/databases/data/dist/resfinder/phenotype_panels.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,631 copying build/lib/staramr/databases/data/dist/resfinder/README.md -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,639 copying build/lib/staramr/databases/data/dist/resfinder/disinfectant.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,647 copying build/lib/staramr/databases/data/dist/resfinder/INSTALL.py -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,652 copying build/lib/staramr/databases/data/dist/resfinder/colistin.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,667 copying build/lib/staramr/databases/data/dist/resfinder/glycopeptide.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,684 copying build/lib/staramr/databases/data/dist/resfinder/CHECK-entries.sh -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,691 copying build/lib/staramr/databases/data/dist/resfinder/sulphonamide.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,703 copying build/lib/staramr/databases/data/dist/resfinder/beta-lactam.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,881 copying build/lib/staramr/databases/data/dist/resfinder/phenotypes.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,938 copying build/lib/staramr/databases/data/dist/resfinder/nitroimidazole.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,945 copying build/lib/staramr/databases/data/dist/resfinder/pseudomonicacid.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,952 copying build/lib/staramr/databases/data/dist/resfinder/fosfomycin.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,961 copying build/lib/staramr/databases/data/dist/resfinder/oxazolidinone.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,972 copying build/lib/staramr/databases/data/dist/resfinder/history.txt -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,982 copying build/lib/staramr/databases/data/dist/resfinder/quinolone.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:47,997 copying build/lib/staramr/databases/data/dist/resfinder/config -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:48,003 copying build/lib/staramr/databases/data/dist/resfinder/fusidicacid.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:48,009 copying build/lib/staramr/databases/data/dist/resfinder/macrolide.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:48,032 copying build/lib/staramr/databases/data/dist/resfinder/trimethoprim.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:48,043 copying build/lib/staramr/databases/data/dist/resfinder/.gitignore -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:48,049 copying build/lib/staramr/databases/data/dist/resfinder/tetracycline.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:48,077 copying build/lib/staramr/databases/data/dist/resfinder/phenicol.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:48,088 copying build/lib/staramr/databases/data/dist/resfinder/aminoglycoside.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/resfinder 2022-05-31T20:51:48,113 copying build/lib/staramr/databases/data/dist/resfinder-info.ini -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist 2022-05-31T20:51:48,118 copying build/lib/staramr/databases/data/dist/pointfinder-info.ini -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist 2022-05-31T20:51:48,125 creating build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,128 copying build/lib/staramr/databases/data/dist/plasmidfinder/Inc18.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,139 copying build/lib/staramr/databases/data/dist/plasmidfinder/INSTALL.py -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,143 copying build/lib/staramr/databases/data/dist/plasmidfinder/Rep_trans.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,151 copying build/lib/staramr/databases/data/dist/plasmidfinder/RepA_N.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,165 copying build/lib/staramr/databases/data/dist/plasmidfinder/Rep3.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,176 copying build/lib/staramr/databases/data/dist/plasmidfinder/Rep2.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,184 copying build/lib/staramr/databases/data/dist/plasmidfinder/enterobacteriales.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,197 copying build/lib/staramr/databases/data/dist/plasmidfinder/NT_Rep.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,204 copying build/lib/staramr/databases/data/dist/plasmidfinder/config -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,210 copying build/lib/staramr/databases/data/dist/plasmidfinder/.gitignore -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,215 copying build/lib/staramr/databases/data/dist/plasmidfinder/RepL.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,222 copying build/lib/staramr/databases/data/dist/plasmidfinder/Rep1.fsa -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist/plasmidfinder 2022-05-31T20:51:48,234 copying build/lib/staramr/databases/data/dist/plasmidfinder-info.ini -> build/bdist.linux-armv7l/wheel/staramr/databases/data/dist 2022-05-31T20:51:48,241 creating build/bdist.linux-armv7l/wheel/staramr/databases/exclude 2022-05-31T20:51:48,244 copying build/lib/staramr/databases/exclude/__init__.py -> build/bdist.linux-armv7l/wheel/staramr/databases/exclude 2022-05-31T20:51:48,250 creating build/bdist.linux-armv7l/wheel/staramr/databases/exclude/data 2022-05-31T20:51:48,253 copying build/lib/staramr/databases/exclude/data/genes_to_exclude.tsv -> build/bdist.linux-armv7l/wheel/staramr/databases/exclude/data 2022-05-31T20:51:48,259 copying build/lib/staramr/databases/exclude/ExcludeGenesList.py -> build/bdist.linux-armv7l/wheel/staramr/databases/exclude 2022-05-31T20:51:48,264 copying build/lib/staramr/databases/BlastDatabaseRepository.py -> build/bdist.linux-armv7l/wheel/staramr/databases 2022-05-31T20:51:48,271 copying build/lib/staramr/databases/AMRDatabasesManager.py -> build/bdist.linux-armv7l/wheel/staramr/databases 2022-05-31T20:51:48,277 running install_egg_info 2022-05-31T20:51:48,304 Copying staramr.egg-info to build/bdist.linux-armv7l/wheel/staramr-0.8.0-py3.5.egg-info 2022-05-31T20:51:48,333 running install_scripts 2022-05-31T20:51:48,474 creating build/bdist.linux-armv7l/wheel/staramr-0.8.0.data 2022-05-31T20:51:48,475 creating build/bdist.linux-armv7l/wheel/staramr-0.8.0.data/scripts 2022-05-31T20:51:48,477 copying build/scripts-3.5/staramr -> build/bdist.linux-armv7l/wheel/staramr-0.8.0.data/scripts 2022-05-31T20:51:48,481 changing mode of build/bdist.linux-armv7l/wheel/staramr-0.8.0.data/scripts/staramr to 755 2022-05-31T20:51:48,548 creating build/bdist.linux-armv7l/wheel/staramr-0.8.0.dist-info/WHEEL 2022-05-31T20:51:51,519 Building wheel for staramr (setup.py): finished with status 'done' 2022-05-31T20:51:51,537 Created wheel for staramr: filename=staramr-0.8.0-py3-none-any.whl size=838998 sha256=fa4382aa1bb8289c73da3ed22a04bf21379d21fd06c47fa1224c7d8178d4f118 2022-05-31T20:51:51,538 Stored in directory: /tmp/pip-ephem-wheel-cache-bf0bhy0r/wheels/83/55/db/7d7ca78a8b29b9cc6dfbd4cdd24f807ea9d24750afdffece7c 2022-05-31T20:51:51,590 Successfully built staramr 2022-05-31T20:51:51,736 Removed build tracker: '/tmp/pip-req-tracker-b6uebvuy'