2022-06-02T14:10:19,445 Created temporary directory: /tmp/pip-ephem-wheel-cache-gz02hw5m 2022-06-02T14:10:19,450 Created temporary directory: /tmp/pip-build-tracker-4f9yvfkd 2022-06-02T14:10:19,451 Initialized build tracking at /tmp/pip-build-tracker-4f9yvfkd 2022-06-02T14:10:19,452 Created build tracker: /tmp/pip-build-tracker-4f9yvfkd 2022-06-02T14:10:19,452 Entered build tracker: /tmp/pip-build-tracker-4f9yvfkd 2022-06-02T14:10:19,453 Created temporary directory: /tmp/pip-wheel-as0a_1ns 2022-06-02T14:10:19,516 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-02T14:10:19,524 2 location(s) to search for versions of ngs-tools: 2022-06-02T14:10:19,524 * https://pypi.org/simple/ngs-tools/ 2022-06-02T14:10:19,524 * https://www.piwheels.org/simple/ngs-tools/ 2022-06-02T14:10:19,526 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/ 2022-06-02T14:10:19,527 Getting page https://pypi.org/simple/ngs-tools/ 2022-06-02T14:10:19,530 Found index url https://pypi.org/simple 2022-06-02T14:10:19,654 Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz#sha256=1655e20b854e794ff6a8f519ed9e892ef24b747ad94e01ae5aa1e2c1f6de6d5d (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2 2022-06-02T14:10:19,656 Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz#sha256=6462ce10eb5bf16c779815c467a6425f85736a7d716d876410efd75de01182fe (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0 2022-06-02T14:10:19,657 Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1 2022-06-02T14:10:19,659 Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2 2022-06-02T14:10:19,660 Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.3 2022-06-02T14:10:19,662 Found link https://files.pythonhosted.org/packages/cb/a0/bfbf48866af8f753bfacf0c089e4872351ecb6766706df7f94fa9a94a390/ngs-tools-1.3.0.tar.gz#sha256=2afdea16253b5000e7c7fc725819067a069ce9407fda76098fe34d37a2379e74 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.3.0 2022-06-02T14:10:19,663 Found link 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https://files.pythonhosted.org/packages/67/79/91cfb2bf05a4174358fe2f5e40018ac8d7bd25bdec624c8db7a1754be684/ngs-tools-1.5.2.tar.gz#sha256=d4a384ec37b3c05a30e1213f8cd841f4da024208041ac4aa33c77ef604f39856 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.2 2022-06-02T14:10:19,669 Found link https://files.pythonhosted.org/packages/c7/f5/a526d426400c30f56f36a07a08d381b293235f5cd68aced4affbd6078017/ngs-tools-1.5.3.tar.gz#sha256=8d533065ba84ee138ed2f778f6fb328bd24260d5cee191fd801c10e7402349c3 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.3 2022-06-02T14:10:19,671 Found link https://files.pythonhosted.org/packages/8d/af/0df283513a2ae52349c671c9a9eb5981da588369a2f668332a94f116f04d/ngs-tools-1.5.4.tar.gz#sha256=573722f9d636232a5a808d0037871c767c1bb3f9e2a2f4746efa906fc66ae5b9 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.4 2022-06-02T14:10:19,672 Found link 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https://files.pythonhosted.org/packages/41/8e/77e1a873ddc57f7d0b6bb128eeb647260d0223b23ee908458d389222bcbf/ngs-tools-1.5.11.tar.gz#sha256=c95325b001ed790ba49412d3e1cf1a9f36b495bce646096c5698fb91909a7b69 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.11 2022-06-02T14:10:19,682 Found link https://files.pythonhosted.org/packages/49/81/85de81b35cebfd7b53b0c61a1b4d19ecbedf8e3fa147997e89051ee53e5f/ngs-tools-1.5.12.tar.gz#sha256=bb812dafe08bdb11880131f57ac8d4652c590fff7d3dd800327776495b5a4988 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.12 2022-06-02T14:10:19,684 Found link https://files.pythonhosted.org/packages/d8/e3/75bbaf6215c2392dc9515dd3c4275145a3c4ba8df09e96c0a5ea4cd35090/ngs-tools-1.5.13.tar.gz#sha256=22e86a6e7a860be01cff30940d47b22fb3ca77f25e3b7b9a8703590f5c14c2b0 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.13 2022-06-02T14:10:19,685 Found link https://files.pythonhosted.org/packages/0d/70/466c1a6623fdd59e77d4c6c4d5890ab8b56773ba3670014ef805e9f99042/ngs-tools-1.5.14.tar.gz#sha256=dd440d0cfd6a00cbc861bc9196c9ad484e6be7e8e7ca7380ceb412d2fd26ec39 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.14 2022-06-02T14:10:19,687 Found link https://files.pythonhosted.org/packages/cd/8a/7711c0ca9cbeb9695e4357a1802e1fd3af54131708bc3cb26952c5a05c33/ngs-tools-1.6.0.tar.gz#sha256=332b5f15badb47ed9aa2df9d443200ee0ec0bab993eb5c4649df2607c1ef60f9 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.6.0 2022-06-02T14:10:19,688 Found link https://files.pythonhosted.org/packages/06/34/f04a3190ca0f77c69746bc0b2f861b53a6072d412d3222d4572ee88868fe/ngs-tools-1.7.0.tar.gz#sha256=d2f9340c6d83ef26f6297a099ad96e2f2128d246a4540680c652f995ff1f90ed (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.0 2022-06-02T14:10:19,690 Found link https://files.pythonhosted.org/packages/d4/63/0407c8ea37be5ba5d431864601cb95397ebe09d097c6e2108a605201cd6b/ngs-tools-1.7.1.tar.gz#sha256=65f68195edbb52185d7a0973e718f4b54890837d07efc8f610a9d2cdfbdaa4c2 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.1 2022-06-02T14:10:19,691 Found link https://files.pythonhosted.org/packages/b0/74/df19803c4da47d6b3695f4354fe50506a463c865ec64ef3e8acac8910981/ngs-tools-1.7.2.tar.gz#sha256=061d222cd5cb23fc974f0f4d89c46b4c500d60cf54d3f1f5c98ef6f2a3550073 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.2 2022-06-02T14:10:19,693 Found link https://files.pythonhosted.org/packages/91/0e/8b63071a3b3dee87506483aaa5717ec0ab9bff0a09189577e5417538e43f/ngs-tools-1.7.3.tar.gz#sha256=975de879eeb85236903b5ba4be58671a755229eab7c16473c75ee2b48945efa8 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.3 2022-06-02T14:10:19,694 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngs-tools/ 2022-06-02T14:10:19,694 Getting page https://www.piwheels.org/simple/ngs-tools/ 2022-06-02T14:10:19,696 Found index url https://www.piwheels.org/simple 2022-06-02T14:10:19,918 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.7.2-py3-none-any.whl#sha256=3076f67e20f8b80469c8ebe5b360be410f5231cb577d7d2a7d6e44ea584ce93d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,919 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.7.1-py3-none-any.whl#sha256=4c6e0d32b00bacb5667c956e7aa919aea4165a57fe7e5e39d8dd49b9d2c6b381 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,919 Skipping link: No binaries permitted for ngs-tools: 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https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.13-py3-none-any.whl#sha256=71f0d58589b15c550a9115d38b512a726bb269b1ffed844df50b2ab5a1a31ccc (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,922 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.12-py3-none-any.whl#sha256=f035d3a272d93201ebd4dacad336077f4a4fe79748e96951e1e8f2439f0f5bde (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,922 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.11-py3-none-any.whl#sha256=fc2eef221cdbf60b63b74b217af521166ef46228db32de1ee3b068ec52460fad (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,923 Skipping link: No binaries permitted for ngs-tools: 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https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.1-py3-none-any.whl#sha256=b454700426dd4dbbc802187a1c9e77e95c5a64a035529cda880c03c7471ad63b (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,928 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.0-py3-none-any.whl#sha256=66eed5f69a66f671c00406c785370cd15f237629e263838c17e1c1e9ebd35bf1 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,929 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.4.0-py3-none-any.whl#sha256=043cf74c3a420187c172fce50bbcb9a39baa4473efe511c4d4eaee1915041c43 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,929 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.3.0-py3-none-any.whl#sha256=637c180e653c8cc118967d5fffe8c5e5c72db0681df97b983f940d465d59e7a0 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,930 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.3-py3-none-any.whl#sha256=e4325ca6c2e61038f550ca9e5c513593ba4cdcafd0bb9e56dc9515e3734bde2d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,930 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.2-py3-none-any.whl#sha256=682da6e59007cd48bb3f8c93cb752483e21e6862c377732587e3f19646625c0d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,931 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.1-py3-none-any.whl#sha256=45796f1aff4813d9efa48859e8b01f0e85358e3f2fc682ffdd190956b3fcf1f2 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,931 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.0-py3-none-any.whl#sha256=60dbcc1c5132c03998766fda20b622a4dce037ed6d7f0a627358e1bad4f4372c (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,932 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.1.2-py3-none-any.whl#sha256=9b9bd1c9ee9db219e8ec6daf68374a570b1120218a4ef7d7a04ee415d18e05fd (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-02T14:10:19,933 Skipping link: not a file: https://www.piwheels.org/simple/ngs-tools/ 2022-06-02T14:10:19,933 Skipping link: not a file: https://pypi.org/simple/ngs-tools/ 2022-06-02T14:10:19,977 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates 2022-06-02T14:10:20,008 Collecting ngs-tools==1.7.3 2022-06-02T14:10:20,013 Created temporary directory: /tmp/pip-unpack-8k3me0gm 2022-06-02T14:10:22,229 Downloading ngs-tools-1.7.3.tar.gz (45.2 MB) 2022-06-02T14:10:37,801 Added ngs-tools==1.7.3 from https://files.pythonhosted.org/packages/91/0e/8b63071a3b3dee87506483aaa5717ec0ab9bff0a09189577e5417538e43f/ngs-tools-1.7.3.tar.gz#sha256=975de879eeb85236903b5ba4be58671a755229eab7c16473c75ee2b48945efa8 to build tracker '/tmp/pip-build-tracker-4f9yvfkd' 2022-06-02T14:10:37,804 Running setup.py (path:/tmp/pip-wheel-as0a_1ns/ngs-tools_4a64761fcb1c4feb9da9c3511eb73fe0/setup.py) egg_info for package ngs-tools 2022-06-02T14:10:37,806 Created temporary directory: /tmp/pip-pip-egg-info-frqb4o3j 2022-06-02T14:10:37,806 Preparing metadata (setup.py): started 2022-06-02T14:10:37,808 Running command python setup.py egg_info 2022-06-02T14:10:47,259 running egg_info 2022-06-02T14:10:47,264 creating /tmp/pip-pip-egg-info-frqb4o3j/ngs_tools.egg-info 2022-06-02T14:10:47,906 writing /tmp/pip-pip-egg-info-frqb4o3j/ngs_tools.egg-info/PKG-INFO 2022-06-02T14:10:48,500 writing dependency_links to /tmp/pip-pip-egg-info-frqb4o3j/ngs_tools.egg-info/dependency_links.txt 2022-06-02T14:10:51,458 writing requirements to /tmp/pip-pip-egg-info-frqb4o3j/ngs_tools.egg-info/requires.txt 2022-06-02T14:10:52,053 writing top-level names to /tmp/pip-pip-egg-info-frqb4o3j/ngs_tools.egg-info/top_level.txt 2022-06-02T14:10:52,056 writing manifest file '/tmp/pip-pip-egg-info-frqb4o3j/ngs_tools.egg-info/SOURCES.txt' 2022-06-02T14:10:52,832 reading manifest file '/tmp/pip-pip-egg-info-frqb4o3j/ngs_tools.egg-info/SOURCES.txt' 2022-06-02T14:10:52,835 reading manifest template 'MANIFEST.in' 2022-06-02T14:10:52,848 adding license file 'LICENSE' 2022-06-02T14:10:52,856 writing manifest file '/tmp/pip-pip-egg-info-frqb4o3j/ngs_tools.egg-info/SOURCES.txt' 2022-06-02T14:10:53,076 Preparing metadata (setup.py): finished with status 'done' 2022-06-02T14:10:53,087 Source in /tmp/pip-wheel-as0a_1ns/ngs-tools_4a64761fcb1c4feb9da9c3511eb73fe0 has version 1.7.3, which satisfies requirement ngs-tools==1.7.3 from https://files.pythonhosted.org/packages/91/0e/8b63071a3b3dee87506483aaa5717ec0ab9bff0a09189577e5417538e43f/ngs-tools-1.7.3.tar.gz#sha256=975de879eeb85236903b5ba4be58671a755229eab7c16473c75ee2b48945efa8 2022-06-02T14:10:53,089 Removed ngs-tools==1.7.3 from https://files.pythonhosted.org/packages/91/0e/8b63071a3b3dee87506483aaa5717ec0ab9bff0a09189577e5417538e43f/ngs-tools-1.7.3.tar.gz#sha256=975de879eeb85236903b5ba4be58671a755229eab7c16473c75ee2b48945efa8 from build tracker '/tmp/pip-build-tracker-4f9yvfkd' 2022-06-02T14:10:53,102 Created temporary directory: /tmp/pip-unpack-0kkugfor 2022-06-02T14:10:53,103 Building wheels for collected packages: ngs-tools 2022-06-02T14:10:53,113 Created temporary directory: /tmp/pip-wheel-fawurvmb 2022-06-02T14:10:53,114 Building wheel for ngs-tools (setup.py): started 2022-06-02T14:10:53,116 Destination directory: /tmp/pip-wheel-fawurvmb 2022-06-02T14:10:53,116 Running command python setup.py bdist_wheel 2022-06-02T14:11:01,791 running bdist_wheel 2022-06-02T14:11:01,946 running build 2022-06-02T14:11:01,947 running build_py 2022-06-02T14:11:02,589 creating build 2022-06-02T14:11:02,590 creating build/lib 2022-06-02T14:11:02,591 creating build/lib/ngs_tools 2022-06-02T14:11:02,593 copying ngs_tools/__init__.py -> build/lib/ngs_tools 2022-06-02T14:11:02,597 copying ngs_tools/progress.py -> build/lib/ngs_tools 2022-06-02T14:11:02,600 copying ngs_tools/sequence.py -> build/lib/ngs_tools 2022-06-02T14:11:02,606 copying ngs_tools/utils.py -> build/lib/ngs_tools 2022-06-02T14:11:02,610 copying ngs_tools/bam.py -> build/lib/ngs_tools 2022-06-02T14:11:02,615 copying ngs_tools/logging.py -> build/lib/ngs_tools 2022-06-02T14:11:02,620 creating build/lib/ngs_tools/chemistry 2022-06-02T14:11:02,621 copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry 2022-06-02T14:11:02,624 copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry 2022-06-02T14:11:02,629 copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry 2022-06-02T14:11:02,633 copying ngs_tools/chemistry/MultimodalChemistry.py -> build/lib/ngs_tools/chemistry 2022-06-02T14:11:02,636 copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry 2022-06-02T14:11:02,641 creating build/lib/ngs_tools/fasta 2022-06-02T14:11:02,643 copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta 2022-06-02T14:11:02,646 copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta 2022-06-02T14:11:02,650 copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta 2022-06-02T14:11:02,655 creating build/lib/ngs_tools/fastq 2022-06-02T14:11:02,656 copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq 2022-06-02T14:11:02,661 copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq 2022-06-02T14:11:02,664 copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq 2022-06-02T14:11:02,668 creating build/lib/ngs_tools/binary 2022-06-02T14:11:02,669 copying ngs_tools/binary/__init__.py -> build/lib/ngs_tools/binary 2022-06-02T14:11:02,673 copying ngs_tools/binary/ArgumentValidator.py -> build/lib/ngs_tools/binary 2022-06-02T14:11:02,676 copying ngs_tools/binary/Argument.py -> build/lib/ngs_tools/binary 2022-06-02T14:11:02,679 copying ngs_tools/binary/Binary.py -> build/lib/ngs_tools/binary 2022-06-02T14:11:02,683 creating build/lib/ngs_tools/gtf 2022-06-02T14:11:02,685 copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf 2022-06-02T14:11:02,688 copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf 2022-06-02T14:11:02,692 copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf 2022-06-02T14:11:02,695 copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf 2022-06-02T14:11:02,699 copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf 2022-06-02T14:11:02,702 running egg_info 2022-06-02T14:11:03,999 writing ngs_tools.egg-info/PKG-INFO 2022-06-02T14:11:04,586 writing dependency_links to ngs_tools.egg-info/dependency_links.txt 2022-06-02T14:11:07,512 writing requirements to ngs_tools.egg-info/requires.txt 2022-06-02T14:11:08,101 writing top-level names to ngs_tools.egg-info/top_level.txt 2022-06-02T14:11:08,165 reading manifest file 'ngs_tools.egg-info/SOURCES.txt' 2022-06-02T14:11:08,173 reading manifest template 'MANIFEST.in' 2022-06-02T14:11:08,185 adding license file 'LICENSE' 2022-06-02T14:11:08,194 writing manifest file 'ngs_tools.egg-info/SOURCES.txt' 2022-06-02T14:11:08,199 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-02T14:11:08,200 ############################ 2022-06-02T14:11:08,200 # Package would be ignored # 2022-06-02T14:11:08,200 ############################ 2022-06-02T14:11:08,201 Python recognizes 'ngs_tools.chemistry.whitelists' as an importable package, however it is 2022-06-02T14:11:08,201 included in the distribution as "data". 2022-06-02T14:11:08,201 This behavior is likely to change in future versions of setuptools (and 2022-06-02T14:11:08,202 therefore is considered deprecated). 2022-06-02T14:11:08,202 Please make sure that 'ngs_tools.chemistry.whitelists' is included as a package by using 2022-06-02T14:11:08,203 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-02T14:11:08,203 You can read more about "package discovery" and "data files" on setuptools 2022-06-02T14:11:08,203 documentation page. 2022-06-02T14:11:08,205 !! 2022-06-02T14:11:08,205 check.warn(importable) 2022-06-02T14:11:08,206 creating build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:08,206 copying ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:08,344 copying ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:09,204 copying ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:09,338 copying ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:09,460 copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:09,567 copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:09,679 copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:10,571 copying ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:10,776 copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:10,803 copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:10,810 copying ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-02T14:11:11,526 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-06-02T14:11:11,527 setuptools.SetuptoolsDeprecationWarning, 2022-06-02T14:11:12,188 installing to build/bdist.linux-armv7l/wheel 2022-06-02T14:11:12,188 running install 2022-06-02T14:11:12,249 running install_lib 2022-06-02T14:11:12,895 creating build/bdist.linux-armv7l 2022-06-02T14:11:12,896 creating build/bdist.linux-armv7l/wheel 2022-06-02T14:11:12,899 creating build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-02T14:11:12,902 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-02T14:11:12,904 copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-02T14:11:12,910 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:12,911 copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:13,011 copying build/lib/ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:13,147 copying build/lib/ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:13,271 copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:13,302 copying build/lib/ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:13,416 copying build/lib/ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:13,421 copying build/lib/ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:13,597 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:14,497 copying build/lib/ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:15,388 copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:15,511 copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-02T14:11:15,515 copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-02T14:11:15,519 copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-02T14:11:15,523 copying build/lib/ngs_tools/chemistry/MultimodalChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-02T14:11:15,526 copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-02T14:11:15,530 copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-02T14:11:15,534 creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-06-02T14:11:15,535 copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-06-02T14:11:15,539 copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-06-02T14:11:15,542 copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-06-02T14:11:15,547 creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-06-02T14:11:15,548 copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-06-02T14:11:15,552 copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-06-02T14:11:15,555 copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-06-02T14:11:15,558 copying build/lib/ngs_tools/progress.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-02T14:11:15,563 creating build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-02T14:11:15,564 copying build/lib/ngs_tools/binary/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-02T14:11:15,568 copying build/lib/ngs_tools/binary/ArgumentValidator.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-02T14:11:15,571 copying build/lib/ngs_tools/binary/Argument.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-02T14:11:15,574 copying build/lib/ngs_tools/binary/Binary.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-02T14:11:15,577 copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-02T14:11:15,583 copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-02T14:11:15,588 copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-02T14:11:15,592 copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-02T14:11:15,596 creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-02T14:11:15,598 copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-02T14:11:15,602 copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-02T14:11:15,607 copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-02T14:11:15,612 copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-02T14:11:15,615 copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-02T14:11:15,618 running install_egg_info 2022-06-02T14:11:16,275 Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.7.3-py3.7.egg-info 2022-06-02T14:11:16,300 running install_scripts 2022-06-02T14:11:16,465 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-06-02T14:11:16,473 creating build/bdist.linux-armv7l/wheel/ngs_tools-1.7.3.dist-info/WHEEL 2022-06-02T14:11:16,478 creating '/tmp/pip-wheel-fawurvmb/ngs_tools-1.7.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-06-02T14:11:16,482 adding 'ngs_tools/__init__.py' 2022-06-02T14:11:16,487 adding 'ngs_tools/bam.py' 2022-06-02T14:11:16,492 adding 'ngs_tools/logging.py' 2022-06-02T14:11:16,494 adding 'ngs_tools/progress.py' 2022-06-02T14:11:16,503 adding 'ngs_tools/sequence.py' 2022-06-02T14:11:16,510 adding 'ngs_tools/utils.py' 2022-06-02T14:11:16,514 adding 'ngs_tools/binary/Argument.py' 2022-06-02T14:11:16,517 adding 'ngs_tools/binary/ArgumentValidator.py' 2022-06-02T14:11:16,520 adding 'ngs_tools/binary/Binary.py' 2022-06-02T14:11:16,522 adding 'ngs_tools/binary/__init__.py' 2022-06-02T14:11:16,529 adding 'ngs_tools/chemistry/Chemistry.py' 2022-06-02T14:11:16,532 adding 'ngs_tools/chemistry/MultimodalChemistry.py' 2022-06-02T14:11:16,536 adding 'ngs_tools/chemistry/SingleCellChemistry.py' 2022-06-02T14:11:16,538 adding 'ngs_tools/chemistry/SpatialChemistry.py' 2022-06-02T14:11:16,541 adding 'ngs_tools/chemistry/__init__.py' 2022-06-02T14:11:17,280 adding 'ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz' 2022-06-02T14:11:22,830 adding 'ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz' 2022-06-02T14:11:23,944 adding 'ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz' 2022-06-02T14:11:24,686 adding 'ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz' 2022-06-02T14:11:25,361 adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz' 2022-06-02T14:11:26,072 adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz' 2022-06-02T14:11:31,702 adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz' 2022-06-02T14:11:33,169 adding 'ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz' 2022-06-02T14:11:33,408 adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz' 2022-06-02T14:11:33,421 adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz' 2022-06-02T14:11:33,428 adding 'ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz' 2022-06-02T14:11:33,433 adding 'ngs_tools/fasta/Fasta.py' 2022-06-02T14:11:33,436 adding 'ngs_tools/fasta/FastaEntry.py' 2022-06-02T14:11:33,440 adding 'ngs_tools/fasta/__init__.py' 2022-06-02T14:11:33,444 adding 'ngs_tools/fastq/Fastq.py' 2022-06-02T14:11:33,447 adding 'ngs_tools/fastq/Read.py' 2022-06-02T14:11:33,451 adding 'ngs_tools/fastq/__init__.py' 2022-06-02T14:11:33,455 adding 'ngs_tools/gtf/Gtf.py' 2022-06-02T14:11:33,458 adding 'ngs_tools/gtf/GtfEntry.py' 2022-06-02T14:11:33,461 adding 'ngs_tools/gtf/Segment.py' 2022-06-02T14:11:33,464 adding 'ngs_tools/gtf/SegmentCollection.py' 2022-06-02T14:11:33,468 adding 'ngs_tools/gtf/__init__.py' 2022-06-02T14:11:33,472 adding 'ngs_tools-1.7.3.dist-info/LICENSE' 2022-06-02T14:11:33,474 adding 'ngs_tools-1.7.3.dist-info/METADATA' 2022-06-02T14:11:33,476 adding 'ngs_tools-1.7.3.dist-info/WHEEL' 2022-06-02T14:11:33,478 adding 'ngs_tools-1.7.3.dist-info/top_level.txt' 2022-06-02T14:11:33,479 adding 'ngs_tools-1.7.3.dist-info/RECORD' 2022-06-02T14:11:35,139 removing build/bdist.linux-armv7l/wheel 2022-06-02T14:11:35,444 Building wheel for ngs-tools (setup.py): finished with status 'done' 2022-06-02T14:11:36,777 Created wheel for ngs-tools: filename=ngs_tools-1.7.3-py3-none-any.whl size=45157505 sha256=dc35325ca7bddc751abc118bf75cfe4ea82876d0a96bdc9a70c15771faffbb6a 2022-06-02T14:11:36,780 Stored in directory: /tmp/pip-ephem-wheel-cache-gz02hw5m/wheels/d4/0f/17/10ad17e3ad635901f5f9290dcd7db32407b1e523a03d43f095 2022-06-02T14:11:36,856 Successfully built ngs-tools 2022-06-02T14:11:40,255 Removed build tracker: '/tmp/pip-build-tracker-4f9yvfkd'