2022-06-04T17:43:55,410 Created temporary directory: /tmp/pip-ephem-wheel-cache-dp4atcxe 2022-06-04T17:43:55,416 Created temporary directory: /tmp/pip-build-tracker-4qyelrea 2022-06-04T17:43:55,417 Initialized build tracking at /tmp/pip-build-tracker-4qyelrea 2022-06-04T17:43:55,417 Created build tracker: /tmp/pip-build-tracker-4qyelrea 2022-06-04T17:43:55,417 Entered build tracker: /tmp/pip-build-tracker-4qyelrea 2022-06-04T17:43:55,419 Created temporary directory: /tmp/pip-wheel-4o56ppan 2022-06-04T17:43:55,489 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-04T17:43:55,497 2 location(s) to search for versions of pytrimal: 2022-06-04T17:43:55,497 * https://pypi.org/simple/pytrimal/ 2022-06-04T17:43:55,497 * https://www.piwheels.org/simple/pytrimal/ 2022-06-04T17:43:55,498 Fetching project page and analyzing links: https://pypi.org/simple/pytrimal/ 2022-06-04T17:43:55,499 Getting page https://pypi.org/simple/pytrimal/ 2022-06-04T17:43:55,503 Found index url https://pypi.org/simple 2022-06-04T17:43:55,662 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/e7/92/deb27aec34cc7863b866ea29900d2e47e17511e771fd93e4a9f73ad6b8ac/pytrimal-0.1.0-cp310-cp310-macosx_10_15_x86_64.whl#sha256=7ac40ae8834c6246941caba5c28ceba9631310e96b740ace4bb344852f36a06b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,663 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ec/60/4797839372e3883bb134efc65c098c3c6c4d96d8022e41400a1a8a90bb0b/pytrimal-0.1.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=77d22b9309c6394e026ef8fc6b1ece370675afe246210531846e7c22a27e16cd (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,663 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/4b/f5/1d7233b1405054090c3b53605b27bad7119dd1c6238bdc174bb4b10b5df2/pytrimal-0.1.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=14f1df21be7edec3b02a6f08b0a0ebf323d2fb24590dca90462ef7e11f367895 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,664 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/48/2f/69945d01f3d8af3f9a8442c7d5a0fa19f7c81361d568bc856bf502c8ae9a/pytrimal-0.1.0-cp35-cp35m-macosx_10_14_x86_64.whl#sha256=0a2042a306ffc01083b26cd2945b6d5ba89d9082db20ec93186717c054b4e1b1 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,664 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/a9/c2/ccddd18f9a1918b79b346e0d856a2f08971ce68e25d780a9446e3a53860b/pytrimal-0.1.0-cp35-cp35m-manylinux2010_x86_64.whl#sha256=2cabfe69e6cb6aaf76b37a39598b253c05412cd39f7c89deac90d56d42126692 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,665 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/05/6b/cd4cd3b14e9b5644113e3e51cc15a839b3068231cec06441de8f99632b3a/pytrimal-0.1.0-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=ed3a1e341ba3c9678be46a8c3ae58fcbf2769e1a37baf901b4dca546382f1f83 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,665 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/56/0f/65a63a8cbd8e7ee8e80afec55bda84b4e236841224f9a7221595c00a1dba/pytrimal-0.1.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=cdaa9038a4aeb8eb2ba412951bb5621d328d83caa17181490764983269a13e3b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,666 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/0a/38/92fb02233538de1e77eb533350ed7d14068ef1a6f031462f11bce08e05df/pytrimal-0.1.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=d8a629fcad2206efc074ab17e47b2a03d5a2df2d374be11ba53afda0c10c269f (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,666 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/2e/4d/af840c124e2b391640d8df3045b4cdb2bb0eb4d952fe95acd65a0f9043e7/pytrimal-0.1.0-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=444ef85979b7456875ece6c283930a2955244d7b3de09b894d1f893a19a5095e (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,667 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/75/3d/52511029b5d404a58457debf7d60a8fca6b4fd4322db7d2073d8026119b2/pytrimal-0.1.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=8395af2505b928c812356425cc11eb1762542e53fdbc9a92c18477900f5939af (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,668 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d1/cd/2b631d34ee040ffa60a48b58b0c38e5dc41d5f5251fd27f47a4f16650392/pytrimal-0.1.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=86445e44e5917738fffb693e162f5e6f7912b86a100e86b54d46c9f27f47d670 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,668 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/8b/6c/b9e93831941b14de3a41445333d9e09e2389378754527ab0743ff97ab5c7/pytrimal-0.1.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=527a3b22729af435d86134d20cef0fbc54bc9bd7cc61531f4565f6b3787d88f9 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,669 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/94/1c/dab45d42e6fb9f9f2e8a4e76da1722faadf7eba1254c912b07e443398499/pytrimal-0.1.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=8f0e6c857362571b1e859540dfaf3f2ad95b162ef06e16a90a5ee32a6c617237 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,669 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d9/f8/113e5e8ffc20f0477eb2c20d59e0e64c6d5dda295af95eb6979bd2efee93/pytrimal-0.1.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=3e4c96d07fab29f287e898b702ff1504ce4e5cac9378d79d51967a021e46e050 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,670 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/cd/ca/e3bc1316c04c94ba11885b933473ce229863522b438a112c27b2fbfe080e/pytrimal-0.1.0-cp39-cp39-macosx_10_15_x86_64.whl#sha256=38d34b9f2e2afeccb4da9c7850260217e31062f0038f36978978bc90d9ffb3e1 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,670 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/7c/15/c057ace451e9ccc70f96639e56461ca403ba2c829af6c6bbf777d36494df/pytrimal-0.1.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=e9bc72bde38b3e4fd075f1f8f8f7d9d5a8d7c0f7bbd42f72688c74e527327a32 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,671 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/6c/78/0a693856b86c7e419cfebe567e5c8ceafe8339b5600762d8cd8566607de9/pytrimal-0.1.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=0e62099e372edbc13fd5b4175a65254bab26850dbec6807cba86135a67add2b5 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,671 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/2c/e4/b946aca9e551aa0dd6cd90705547b979e4834cb5a63834121f4f911461e3/pytrimal-0.1.0-pp36-pypy36_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=c8db855bc7409c535403bd81120fa8d623e52aeddb96d055e5fd826c8ee16dce (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,672 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/19/48/1283651eccc18b73c1f0c4af418db4a831d1ef949d9edbdbf8a47f40d2a8/pytrimal-0.1.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=1fa01edbdce1d5bddbf98be5df21cd9dd59a703cf8365448ba5a634e7946bf1a (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,672 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/84/24/1bc90c83278945f66b31974a2aba5bf3e9d4b272d78790120748bf9485f5/pytrimal-0.1.0-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=cb0ecf1eea08b25da60a2cbadc2015bd9393148d1c60918dd4e68f0ec84bfa39 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,673 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b1/6d/7d46cda527909bd41ead416342e24999e8cc63c82560bfaf5918fd708af7/pytrimal-0.1.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=f460c96c2a032554984102bb7e57c7d4cc61d1abf1069e1362747f65a49fdf96 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,673 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/6a/aa/bae9c9761abe07e00fa0dc292ef343354f2e508e9ce37f72f8754dfb7903/pytrimal-0.1.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=30d6cf22157d9b29d5c3afb945f93f180c3c385e2b21ca688183d737ec7a48ff (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,675 Found link https://files.pythonhosted.org/packages/39/09/11aae9fa483929539f100beb384da40724188ff102ee94517b4a3ccba5c8/pytrimal-0.1.0.tar.gz#sha256=1af23728d26de53950644e1bdd1803a7fb8d9d6c6cb0c4aa38953c4fd0afe994 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5), version: 0.1.0 2022-06-04T17:43:55,675 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/cd/95/15ba2a87e8ef78e2362fb9fa9900f0cee75d4938f92d2d889b0e8cd09f71/pytrimal-0.1.1-cp310-cp310-macosx_10_15_x86_64.whl#sha256=cde8e4142c6ea1e5ebd35d81a4e93be816efb23a12c928d2522349577724a425 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,676 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/16/99/4b6ddc7537fa853cadf9d9ef81af95019c58003d5119febce6af8bddedcb/pytrimal-0.1.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=d037f9d14b4dec97c2fce851bad205c8c9ea46a3dde4a8fb7f0f39ed4a2d9e70 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,677 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b5/c3/e1edfbe9450b0c2d23d36fa8e624dc28220d7f23ddaf3e46829c18c1725b/pytrimal-0.1.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=93b5ad25babcd407da31ff1dcea921de0dc18eafadbd17a9ab25e964a08d45df (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,677 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/9b/c9/655540ff5e71515c6a37a61e71b5dcc9b3c29515a7ed7601dd40f7e5e8ce/pytrimal-0.1.1-cp35-cp35m-macosx_10_14_x86_64.whl#sha256=5c7a6f54f525b5d8902660ad56ef89b460332c586a75fd1fd20efdc95cf22e97 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,678 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/1c/85/3880bc8ccfc099b68d8e18baf2aa194127082c0cdf274833c13e83cee1a9/pytrimal-0.1.1-cp35-cp35m-manylinux2010_x86_64.whl#sha256=9686c407bf596ef2a2d123d3b133cf1977562273c64a3b140a649403994ecb8d (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,678 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/61/43/dc432a69a7f2a59f4e5e509c206f1178d56b401206cc661957179c9ddeae/pytrimal-0.1.1-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=2cbfd6359e677fad3885d99af6be30da10fe0d1e95cdbc65484b22ff3416fbc4 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,679 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/12/7a/53b39f4d3b3ae1da433bae3111d667d3d5813bece2a4b19bcc4a21fd11fa/pytrimal-0.1.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=19ad1b204530940193eca5cb407cbc5a9caf9217ef09d66380e0a61adc15e7dd (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,679 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/77/8b/87f775f8f50c6f3b32813d272f7534fa00372db8cdb41ceda4971662368f/pytrimal-0.1.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=25fe1d0d110d26bcbf2e1486c5df482e57eb04fb5afb2d846d87b3beed446822 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,680 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/e5/e5/9bd5e09db10f69b2d749e985a5da7b66e98688f285bddf7f5a666301aff3/pytrimal-0.1.1-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=29a4451db228da9f40e3d63bfd5fe957884d728ba4ca8f4b7ca84844dd9e0f90 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,680 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/da/35/5ce9cbae068eb2d7fb9c03aa07281308751a38c3d6bdb521c69345fefbda/pytrimal-0.1.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=425f1f9bf612e91c1f74b42578ac6d570737c099c220aa9cbea6448ee6b5bf31 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,681 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/74/22/25d73231abb8d9553a4be31493a8034544d1c16ee60204ab408c7406973d/pytrimal-0.1.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=3750218a87c26619134a2e3b683dbb0e3ac4931e2a36fde4924483e052372ea4 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,681 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/72/34/deec927936c24cad8d5dd6b1d8e503e9087a9e08312ebe4cae88beb217ce/pytrimal-0.1.1-cp38-cp38-macosx_10_15_x86_64.whl#sha256=61f35b5ff95e57ae34eefff455903d142ce6483ea53dc119a46c183d97314899 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,682 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/27/f7/10554d83d0ec45d5500b9e98eaca33706103b94ee91c6f6bf9964b0a380c/pytrimal-0.1.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=65a2b64a8c0f97d3f612b68f0961b7d3f5433e383959b256543e0c0f73b20165 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,682 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/41/c7/044460829089c368091d78f9a8b99327e789d33fb1e7bd1803ea66b3113b/pytrimal-0.1.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=b37161d15b051c54970f4ec201de7b5eac97be854f94a8f6ead1959b8abb380b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,683 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/6f/9e/05203b6f71b87fb6ecd15c3e9c574abe49252c23207bffd33946e11dff82/pytrimal-0.1.1-cp39-cp39-macosx_10_15_x86_64.whl#sha256=79225c6ea3a4d5dbab116b470481b26e4704a33472f8ae4567ed4ce58605de74 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,683 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/bb/db/7c0fa4d3e5d996d2c9714a53e4391aba90f5fc2d532e43dce4af051da656/pytrimal-0.1.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=20a99b74a063130d2f999cbf3723549715c502baab1dbe28339bcfe0dd2ade1a (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,684 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/71/c2/de54862ac53e4644da95cc5d45c9e5dac1d461692ee5db20d380429b29df/pytrimal-0.1.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=2cc304e66208eeea4732f0fb751fa4212aa5a9606e62f289ecde42e8e95f5f7c (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,684 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/f3/9f/268de33e758c07ddaca562b49fc69e05e2754bcfebd1ebd981e259eeff6f/pytrimal-0.1.1-pp36-pypy36_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=256a8ef5404d334442c82dabac708f970ec96bdc023087697220151238ecc4a2 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,685 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/36/58/d74103e669267602491f2ed32f9d2579844fa18da914f0397bf096daa911/pytrimal-0.1.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=6a44c2e9cab526603dbe45d2abacd973dab841c01b0deacfe2b618fa2abfa435 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,685 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/9c/63/539c1d358fe0952f7df82e2bb7bec9810385121673cc93859955b2c5aed1/pytrimal-0.1.1-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=072dd3c338713e79d6cd327bbb6c83df30b05ea56884614cd16e637dfa3792ca (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,686 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ae/ca/58bd8a813592f678c7d550bf0ddcc625922a2f891b4c53b2062c71aaa1a1/pytrimal-0.1.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=9a441f0a8810c42469e30086dace493dbf7c360a8c328ddb6719b3084b07101d (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,687 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/c4/8b/f4066f88bce2590fbad7a52d52588c23a7410a07e5b278925ecf5b0bf934/pytrimal-0.1.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=3c4d25b7ec0467576eeac127f2ec05912fca109c16e26e72726e8410a638496b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,688 Found link https://files.pythonhosted.org/packages/86/c4/83edee2cc512ab4e6f48160b4f7e737681a8b0cabf4df5798ed32656e062/pytrimal-0.1.1.tar.gz#sha256=afaf88c657e631d573f3b951c845ac2d69d260b2a9c7a84b483f8fff2e9cce70 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5), version: 0.1.1 2022-06-04T17:43:55,689 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/24/1b/3c52d892348ffe2df0778d09e3650dc5f6e524d01333a1842067f14af62d/pytrimal-0.1.2-cp310-cp310-macosx_10_15_x86_64.whl#sha256=e65742e7d6e9233a0417c5000485b156c4e12312b7359b021e85a78541d2267b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,689 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/6d/3e/26e2fc28d6f07c55b6279ec9785098ba866ea41a892e542160efdeb1b755/pytrimal-0.1.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=dd84c7e4d0bf2ea9a0f1c72276257ed7ea15b994ae76468db71816bc68397c50 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,690 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/c9/f7/fd0b169d7447de46c232e11e04a5b880448effa3e94e15121b5df4369106/pytrimal-0.1.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=a83f10fd025954186a33660ab431f784b0a7567121c1a4c646c81070a94fbb45 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,690 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/8a/ed/fc33fc64e959980eb54d0b506d8983b4a92999f5f8ecf21a504fd22b25b3/pytrimal-0.1.2-cp35-cp35m-macosx_10_14_x86_64.whl#sha256=6ef97f79d2d7b5da815943f9b543cbd052f97d4d9cf02e3dd3346c309cc6e069 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,691 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d5/fd/b234fd262c716f2c9b201cabc7b26f2ccdb60e34c9695034ddfdda347d00/pytrimal-0.1.2-cp35-cp35m-manylinux2010_x86_64.whl#sha256=ac3df92814819af7081d24cd06435a90ac111fbdc5ee2791962e908a3e5eb670 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,691 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b5/e6/a8bc5bea8875b2bb52a443d2467a8048e1ee4f99c8f35f3bd215c26b51b6/pytrimal-0.1.2-cp36-cp36m-macosx_10_14_x86_64.whl#sha256=497bffa15e479b554ba92199a16b37f64d647db6bf37c5298135c7376c9005b3 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,692 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/91/c9/ba2d80eea0746c3bccd4ab0e1ebcbf520ef759430502e44f7c81fa53c651/pytrimal-0.1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=8963da79d13a974d5db847f5d8e19eeded8a5dc301c9be9591089de0023e7cfd (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,692 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/80/55/ac4a531b5f9ab21dca1e4b21fd7a0ec1adf82e8f1062de13585589821bb0/pytrimal-0.1.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=241a9c1190cbccf97566cb6d4d5ab4eb6f2b2634ea3546ad4be074e8f08c0771 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,693 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/05/2e/4fc2d442e3005e34ba85f5123d19aa2792dba2c6af1eec5456baba1ef66b/pytrimal-0.1.2-cp37-cp37m-macosx_10_15_x86_64.whl#sha256=bacf1cdf963108ca2bf336938ef17b1e6f26afe39c5976eae6a838a7ee2b58c6 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,693 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/23/59/f4e10f20bbfe8bf34b2e38543ec73e04ea9f56d95142e0724f90616fa427/pytrimal-0.1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=05b3209c579a846608766329366a69b3241ac7dc628568e7439c95486dee0856 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,694 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/5a/16/36f73560aa5d2627ba84d23cbb4b0d6a30c20b5e179ff26bf287ac603721/pytrimal-0.1.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=f545edc9bc11627f428286847878b3d51c37316b905559b20bb0193da7c0f9d0 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,694 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/a2/24/9b43cf80a445706c5c08117fa967f740acdd11167fa1dc0f6810e01ec8b4/pytrimal-0.1.2-cp38-cp38-macosx_10_15_x86_64.whl#sha256=cef05d99d3ca63df3fa52ee7482a7763e8fdab18733ccd007c054aeadd6d609e (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,695 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/fc/e2/a798c77f4b6d8a0f06a3ef92d2f5d05c865c4a7ce91de705b85691f76196/pytrimal-0.1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=bb394ce06be51a91bbd0b159ae1a928a98216af1342d5d68a152c957a18b357f (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,695 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/4c/f4/116b6c912b4dab32fefed37ac072702cb45ec87b9854236bafde9bfef12f/pytrimal-0.1.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=eb9d30ec484b308d38735920e2913836fc70002389c0992a88920e89bf0999a9 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,696 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/f3/34/3be16ccee3ce5ec94a6d9a2f83beafc2fd4f7a51b2806c03b3b46f14433d/pytrimal-0.1.2-cp39-cp39-macosx_10_15_x86_64.whl#sha256=5b8745b09a369885adb9745476f34cc7e6a0959974d8193eeeee125f65ab053b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,696 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/1e/25/a2bfe3b916c029ab201db9b77ab789e70591cf3f9f8c0fcd95ac78824c7e/pytrimal-0.1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=059eb4da6d6158518abfc36a9ad048e3b3b7535a3eeb901a7d3f2ebf9f416cc7 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,697 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ca/ca/6a8fb95c6d7d73a36e20283f12c13bb17ad1bfc71e7a58bbd5f546d2a720/pytrimal-0.1.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl#sha256=bf27c551a443b583405b4a0736e522efa5fd8623584d43bc8d6103c3a9622221 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,697 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/8e/00/2f4c24fac8b530c8e66f5ed1b593a38346bd5a6e3d7d1473f7818b98cf1f/pytrimal-0.1.2-pp36-pypy36_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=c4c0cda6c215440f91a952291f25c6ad418f21926f00ad68a8364689050361c1 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,698 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/83/22/73461217ee23720834993d13a3ddbdd4dc49e1dda18c9a810b0effef1faf/pytrimal-0.1.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl#sha256=8c4dd7597176581d886f141ae413c0b04e8915aabf979897939768a5a1043223 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,698 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/ae/90/ec8c2726618ff74741dc87b626808192f7e8e88f04d1c8467ebe589ed88c/pytrimal-0.1.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl#sha256=30493458cddcf6be8bb5e1fd2b60e950c980c16943a29994b63c93d06ba8dd6b (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,699 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/b8/65/d1ae935e5c78469a2a35b07bef9915adfe50d46b5138bd3ee6996e125b95/pytrimal-0.1.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl#sha256=edaa588782951a61cdcc9324e1b772024a4c20761027dbb9343276e1c0e09c3d (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,699 Skipping link: No binaries permitted for pytrimal: https://files.pythonhosted.org/packages/d6/d0/e6d9db538fce39b6411ee7f1d4ad12e206f161ce0d6c8f7fad68721ed33a/pytrimal-0.1.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl#sha256=40d9e3eefa14c7cb61d4e923c44940e90c20baae4e76ce707ba65df851a2b983 (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,701 Found link https://files.pythonhosted.org/packages/bb/9f/09b1393ef649cd099cd2eae2f3044b441d688578cf1570c108171581d29e/pytrimal-0.1.2.tar.gz#sha256=4d179c12795f3e9f50075bcf201f31a15d379ee9698b5c3514c6a66799dc143a (from https://pypi.org/simple/pytrimal/) (requires-python:>=3.5), version: 0.1.2 2022-06-04T17:43:55,702 Fetching project page and analyzing links: https://www.piwheels.org/simple/pytrimal/ 2022-06-04T17:43:55,702 Getting page https://www.piwheels.org/simple/pytrimal/ 2022-06-04T17:43:55,704 Found index url https://www.piwheels.org/simple 2022-06-04T17:43:55,929 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=37809e659b1a6d0ae65708c8315d044d8b3ed5fa169c916d23a800715869074c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,930 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=37809e659b1a6d0ae65708c8315d044d8b3ed5fa169c916d23a800715869074c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,930 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp35-cp35m-linux_armv7l.whl#sha256=4a3dcfa05641310e339af037687c7171ffa116dab65617ebd2d9661d937375ee (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,931 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.2-cp35-cp35m-linux_armv6l.whl#sha256=4a3dcfa05641310e339af037687c7171ffa116dab65617ebd2d9661d937375ee (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,931 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=c54c9649d97022e8ce47cce412b180621f9a77399bf9c58ef855e08f913a237f (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,932 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=c54c9649d97022e8ce47cce412b180621f9a77399bf9c58ef855e08f913a237f (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,932 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=37299a0c9633838823df1040fad4ea675ea5d693df9331240e4dc04f1797003c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,933 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=37299a0c9633838823df1040fad4ea675ea5d693df9331240e4dc04f1797003c (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,933 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp35-cp35m-linux_armv7l.whl#sha256=ed62deb3aed080a21ff74516c43aecc431d77412aff60dbbc4ba6282beee2b7d (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,934 Skipping link: No binaries permitted for pytrimal: https://www.piwheels.org/simple/pytrimal/pytrimal-0.1.1-cp35-cp35m-linux_armv6l.whl#sha256=ed62deb3aed080a21ff74516c43aecc431d77412aff60dbbc4ba6282beee2b7d (from https://www.piwheels.org/simple/pytrimal/) (requires-python:>=3.5) 2022-06-04T17:43:55,934 Skipping link: not a file: https://www.piwheels.org/simple/pytrimal/ 2022-06-04T17:43:55,935 Skipping link: not a file: https://pypi.org/simple/pytrimal/ 2022-06-04T17:43:55,980 Given no hashes to check 1 links for project 'pytrimal': discarding no candidates 2022-06-04T17:43:56,021 Collecting pytrimal==0.1.2 2022-06-04T17:43:56,026 Created temporary directory: /tmp/pip-unpack-xx_uclgy 2022-06-04T17:43:56,117 Downloading pytrimal-0.1.2.tar.gz (8.5 MB) 2022-06-04T17:44:04,509 Added pytrimal==0.1.2 from https://files.pythonhosted.org/packages/bb/9f/09b1393ef649cd099cd2eae2f3044b441d688578cf1570c108171581d29e/pytrimal-0.1.2.tar.gz#sha256=4d179c12795f3e9f50075bcf201f31a15d379ee9698b5c3514c6a66799dc143a to build tracker '/tmp/pip-build-tracker-4qyelrea' 2022-06-04T17:44:04,520 Created temporary directory: /tmp/pip-build-env-mq1lp_53 2022-06-04T17:44:04,541 Created temporary directory: /tmp/pip-standalone-pip-pfwev_wy 2022-06-04T17:44:06,752 Installing build dependencies: started 2022-06-04T17:44:06,754 Running command pip subprocess to install build dependencies 2022-06-04T17:44:17,984 Using pip 22.1 from /tmp/pip-standalone-pip-pfwev_wy/__env_pip__.zip/pip (python 3.9) 2022-06-04T17:44:19,549 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-04T17:44:23,457 Collecting setuptools>=46.4 2022-06-04T17:44:23,729 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.3.2-py3-none-any.whl (1.2 MB) 2022-06-04T17:44:27,379 Collecting cython~=0.29.16 2022-06-04T17:44:28,402 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.30-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-06-04T17:44:33,857 Installing collected packages: setuptools, cython 2022-06-04T17:44:45,447 Creating /tmp/pip-build-env-mq1lp_53/overlay/bin 2022-06-04T17:44:45,451 changing mode of /tmp/pip-build-env-mq1lp_53/overlay/bin/cygdb to 755 2022-06-04T17:44:45,456 changing mode of /tmp/pip-build-env-mq1lp_53/overlay/bin/cython to 755 2022-06-04T17:44:45,460 changing mode of /tmp/pip-build-env-mq1lp_53/overlay/bin/cythonize to 755 2022-06-04T17:44:45,508 Successfully installed cython-0.29.30 setuptools-62.3.2 2022-06-04T17:44:45,701 WARNING: There was an error checking the latest version of pip. 2022-06-04T17:44:46,274 Installing build dependencies: finished with status 'done' 2022-06-04T17:44:46,303 Getting requirements to build wheel: started 2022-06-04T17:44:46,305 Running command Getting requirements to build wheel 2022-06-04T17:44:49,152 Getting requirements to build wheel: finished with status 'done' 2022-06-04T17:44:49,192 Created temporary directory: /tmp/pip-standalone-pip-gdebxnb8 2022-06-04T17:44:51,403 Installing backend dependencies: started 2022-06-04T17:44:51,405 Running command pip subprocess to install backend dependencies 2022-06-04T17:45:02,811 Using pip 22.1 from /tmp/pip-standalone-pip-gdebxnb8/__env_pip__.zip/pip (python 3.9) 2022-06-04T17:45:04,382 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-04T17:45:05,272 Collecting wheel 2022-06-04T17:45:05,309 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-06-04T17:45:09,609 Installing collected packages: wheel 2022-06-04T17:45:09,894 Creating /tmp/pip-build-env-mq1lp_53/normal/bin 2022-06-04T17:45:09,899 changing mode of /tmp/pip-build-env-mq1lp_53/normal/bin/wheel to 755 2022-06-04T17:45:09,926 Successfully installed wheel-0.37.1 2022-06-04T17:45:10,115 WARNING: There was an error checking the latest version of pip. 2022-06-04T17:45:10,546 Installing backend dependencies: finished with status 'done' 2022-06-04T17:45:10,567 Created temporary directory: /tmp/pip-modern-metadata-v27fptsr 2022-06-04T17:45:10,574 Preparing metadata (pyproject.toml): started 2022-06-04T17:45:10,576 Running command Preparing metadata (pyproject.toml) 2022-06-04T17:45:15,469 running dist_info 2022-06-04T17:45:16,086 creating /tmp/pip-modern-metadata-v27fptsr/pytrimal.egg-info 2022-06-04T17:45:16,676 writing /tmp/pip-modern-metadata-v27fptsr/pytrimal.egg-info/PKG-INFO 2022-06-04T17:45:17,248 writing dependency_links to /tmp/pip-modern-metadata-v27fptsr/pytrimal.egg-info/dependency_links.txt 2022-06-04T17:45:20,608 writing top-level names to /tmp/pip-modern-metadata-v27fptsr/pytrimal.egg-info/top_level.txt 2022-06-04T17:45:20,610 writing manifest file '/tmp/pip-modern-metadata-v27fptsr/pytrimal.egg-info/SOURCES.txt' 2022-06-04T17:45:21,305 reading manifest file '/tmp/pip-modern-metadata-v27fptsr/pytrimal.egg-info/SOURCES.txt' 2022-06-04T17:45:21,308 reading manifest template 'MANIFEST.in' 2022-06-04T17:45:22,111 warning: no files found matching '*.h' under directory 'pytrimal' 2022-06-04T17:45:22,131 warning: no previously-included files matching '*.html' found under directory 'pytrimal' 2022-06-04T17:45:22,135 warning: no files found matching '*.h' under directory 'pytrimal/patch' 2022-06-04T17:45:22,136 warning: no files found matching '*.pxd' under directory 'pytrimal/patch' 2022-06-04T17:45:22,137 adding license file 'COPYING' 2022-06-04T17:45:22,163 writing manifest file '/tmp/pip-modern-metadata-v27fptsr/pytrimal.egg-info/SOURCES.txt' 2022-06-04T17:45:22,167 creating '/tmp/pip-modern-metadata-v27fptsr/pytrimal-0.1.2.dist-info' 2022-06-04T17:45:22,357 adding license file "COPYING" (matched pattern "COPYING*") 2022-06-04T17:45:22,606 Preparing metadata (pyproject.toml): finished with status 'done' 2022-06-04T17:45:22,622 Source in /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4 has version 0.1.2, which satisfies requirement pytrimal==0.1.2 from https://files.pythonhosted.org/packages/bb/9f/09b1393ef649cd099cd2eae2f3044b441d688578cf1570c108171581d29e/pytrimal-0.1.2.tar.gz#sha256=4d179c12795f3e9f50075bcf201f31a15d379ee9698b5c3514c6a66799dc143a 2022-06-04T17:45:22,624 Removed pytrimal==0.1.2 from https://files.pythonhosted.org/packages/bb/9f/09b1393ef649cd099cd2eae2f3044b441d688578cf1570c108171581d29e/pytrimal-0.1.2.tar.gz#sha256=4d179c12795f3e9f50075bcf201f31a15d379ee9698b5c3514c6a66799dc143a from build tracker '/tmp/pip-build-tracker-4qyelrea' 2022-06-04T17:45:22,640 Created temporary directory: /tmp/pip-unpack-1wamoccj 2022-06-04T17:45:22,641 Building wheels for collected packages: pytrimal 2022-06-04T17:45:22,650 Created temporary directory: /tmp/pip-wheel-vufr17yh 2022-06-04T17:45:22,650 Destination directory: /tmp/pip-wheel-vufr17yh 2022-06-04T17:45:22,655 Building wheel for pytrimal (pyproject.toml): started 2022-06-04T17:45:22,657 Running command Building wheel for pytrimal (pyproject.toml) 2022-06-04T17:45:27,076 running bdist_wheel 2022-06-04T17:45:27,172 running build 2022-06-04T17:45:27,173 running build_py 2022-06-04T17:45:27,767 creating build 2022-06-04T17:45:27,768 creating build/lib.linux-armv7l-cpython-39 2022-06-04T17:45:27,769 creating build/lib.linux-armv7l-cpython-39/pytrimal 2022-06-04T17:45:27,771 copying pytrimal/_version.py -> build/lib.linux-armv7l-cpython-39/pytrimal 2022-06-04T17:45:27,775 copying pytrimal/__init__.py -> build/lib.linux-armv7l-cpython-39/pytrimal 2022-06-04T17:45:27,780 creating build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,781 copying pytrimal/tests/test_alignment.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,786 copying pytrimal/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,789 copying pytrimal/tests/__main__.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,792 copying pytrimal/tests/test_similarity_matrix.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,795 copying pytrimal/tests/test_automatic_trimmer.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,799 copying pytrimal/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,802 copying pytrimal/tests/test_manual_trimmer.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,806 creating build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,808 copying pytrimal/tests/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,818 copying pytrimal/py.typed -> build/lib.linux-armv7l-cpython-39/pytrimal 2022-06-04T17:45:27,821 copying pytrimal/_trimal.pyi -> build/lib.linux-armv7l-cpython-39/pytrimal 2022-06-04T17:45:27,825 copying pytrimal/tests/requirements.txt -> build/lib.linux-armv7l-cpython-39/pytrimal/tests 2022-06-04T17:45:27,829 copying pytrimal/tests/data/ENOG411BWBU.cons60.gt90.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,843 copying pytrimal/tests/data/ENOG411BWBU.id70.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,852 copying pytrimal/tests/data/ENOG411BWBU.cons40.gt40.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,867 copying pytrimal/tests/data/ENOG411BWBU.strictplus.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,879 copying pytrimal/tests/data/halorhodopsin.afa -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,893 copying pytrimal/tests/data/ENOG411BWBU.gappyout.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,906 copying pytrimal/tests/data/ENOG411BWBU.strict.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,921 copying pytrimal/tests/data/pam70.json -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,926 copying pytrimal/tests/data/example.001.AA.clw -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,929 copying pytrimal/tests/data/ENOG411BWBU.id50.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,934 copying pytrimal/tests/data/ENOG411BWBU.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,952 copying pytrimal/tests/data/ENOG411BWBU.automated1.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,966 copying pytrimal/tests/data/ENOG411BWBU.noallgaps.fasta -> build/lib.linux-armv7l-cpython-39/pytrimal/tests/data 2022-06-04T17:45:27,987 running build_clib 2022-06-04T17:45:28,001 creating build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,003 generating build/temp.linux-armv7l-cpython-39/libtrimal.a from vendor/trimal/source/Cleaner.cpp, vendor/trimal/source/Alignment/Alignment.cpp, vendor/trimal/source/Alignment/sequencesMatrix.cpp, vendor/trimal/source/Statistics/similarityMatrix.cpp, vendor/trimal/source/Statistics/Mold.cpp, vendor/trimal/source/Statistics/Gaps.cpp, vendor/trimal/source/Statistics/Manager.cpp, vendor/trimal/source/Statistics/Similarity.cpp, vendor/trimal/source/Statistics/Consistency.cpp, vendor/trimal/source/reportMessages/errorMessages.cpp, vendor/trimal/source/reportMessages/infoMessages.cpp, vendor/trimal/source/reportMessages/warningMessages.cpp, vendor/trimal/source/FormatHandling/fasta_m10_state.cpp, vendor/trimal/source/FormatHandling/phylip32_state.cpp, vendor/trimal/source/FormatHandling/mega_interleaved_state.cpp, vendor/trimal/source/FormatHandling/mega_sequential_state.cpp, vendor/trimal/source/FormatHandling/fasta_state.cpp, vendor/trimal/source/FormatHandling/phylip_paml_state.cpp, vendor/trimal/source/FormatHandling/pir_state.cpp, vendor/trimal/source/FormatHandling/phylip_paml_m10_state.cpp, vendor/trimal/source/FormatHandling/clustal_state.cpp, vendor/trimal/source/FormatHandling/htmlreport_state.cpp, vendor/trimal/source/FormatHandling/nexus_state.cpp, vendor/trimal/source/FormatHandling/phylip40_m10_state.cpp, vendor/trimal/source/FormatHandling/nexus_m10_state.cpp, vendor/trimal/source/FormatHandling/phylip40_state.cpp, vendor/trimal/source/FormatHandling/phylip32_m10_state.cpp, vendor/trimal/source/FormatHandling/BaseFormatHandler.cpp, vendor/trimal/source/utils.cpp, vendor/trimal/source/InternalBenchmarker.cpp, vendor/trimal/source/trimalManager.cpp, vendor/trimal/source/VCFHandler.cpp 2022-06-04T17:45:28,004 building trimal with unix compiler 2022-06-04T17:45:28,005 generating build/temp.linux-armv7l-cpython-39/utils.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/utils.h 2022-06-04T17:45:28,017 generating build/temp.linux-armv7l-cpython-39/Cleaner.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Cleaner.h 2022-06-04T17:45:28,029 generating build/temp.linux-armv7l-cpython-39/trimalManager.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/trimalManager.h 2022-06-04T17:45:28,038 generating build/temp.linux-armv7l-cpython-39/reportsystem.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/reportsystem.h 2022-06-04T17:45:28,049 generating build/temp.linux-armv7l-cpython-39/defines.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/defines.h 2022-06-04T17:45:28,054 generating build/temp.linux-armv7l-cpython-39/values.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/values.h 2022-06-04T17:45:28,060 generating build/temp.linux-armv7l-cpython-39/VCFHandler.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/VCFHandler.h 2022-06-04T17:45:28,067 generating build/temp.linux-armv7l-cpython-39/InternalBenchmarker.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/InternalBenchmarker.h 2022-06-04T17:45:28,073 creating build/temp.linux-armv7l-cpython-39/Statistics 2022-06-04T17:45:28,075 generating build/temp.linux-armv7l-cpython-39/Statistics/similarityMatrix.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Statistics/similarityMatrix.h 2022-06-04T17:45:28,082 generating build/temp.linux-armv7l-cpython-39/Statistics/Gaps.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Statistics/Gaps.h 2022-06-04T17:45:28,087 generating build/temp.linux-armv7l-cpython-39/Statistics/Manager.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Statistics/Manager.h 2022-06-04T17:45:28,093 generating build/temp.linux-armv7l-cpython-39/Statistics/Consistency.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Statistics/Consistency.h 2022-06-04T17:45:28,099 generating build/temp.linux-armv7l-cpython-39/Statistics/Mold.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Statistics/Mold.h 2022-06-04T17:45:28,103 generating build/temp.linux-armv7l-cpython-39/Statistics/Similarity.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Statistics/Similarity.h 2022-06-04T17:45:28,109 creating build/temp.linux-armv7l-cpython-39/FormatHandling 2022-06-04T17:45:28,111 generating build/temp.linux-armv7l-cpython-39/FormatHandling/nexus_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/nexus_state.h 2022-06-04T17:45:28,116 generating build/temp.linux-armv7l-cpython-39/FormatHandling/fasta_m10_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/fasta_m10_state.h 2022-06-04T17:45:28,120 generating build/temp.linux-armv7l-cpython-39/FormatHandling/formats_header.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/formats_header.h 2022-06-04T17:45:28,124 generating build/temp.linux-armv7l-cpython-39/FormatHandling/BaseFormatHandler.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/BaseFormatHandler.h 2022-06-04T17:45:28,129 generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip32_m10_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/phylip32_m10_state.h 2022-06-04T17:45:28,133 generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip_paml_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/phylip_paml_state.h 2022-06-04T17:45:28,137 generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip40_m10_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/phylip40_m10_state.h 2022-06-04T17:45:28,141 generating build/temp.linux-armv7l-cpython-39/FormatHandling/mega_sequential_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/mega_sequential_state.h 2022-06-04T17:45:28,146 generating build/temp.linux-armv7l-cpython-39/FormatHandling/htmlreport_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/htmlreport_state.h 2022-06-04T17:45:28,150 generating build/temp.linux-armv7l-cpython-39/FormatHandling/mega_interleaved_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/mega_interleaved_state.h 2022-06-04T17:45:28,154 generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip32_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/phylip32_state.h 2022-06-04T17:45:28,158 generating build/temp.linux-armv7l-cpython-39/FormatHandling/clustal_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/clustal_state.h 2022-06-04T17:45:28,162 generating build/temp.linux-armv7l-cpython-39/FormatHandling/FormatManager.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/FormatManager.h 2022-06-04T17:45:28,170 generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip_paml_m10_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/phylip_paml_m10_state.h 2022-06-04T17:45:28,174 generating build/temp.linux-armv7l-cpython-39/FormatHandling/pir_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/pir_state.h 2022-06-04T17:45:28,178 generating build/temp.linux-armv7l-cpython-39/FormatHandling/fasta_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/fasta_state.h 2022-06-04T17:45:28,182 generating build/temp.linux-armv7l-cpython-39/FormatHandling/nexus_m10_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/nexus_m10_state.h 2022-06-04T17:45:28,186 generating build/temp.linux-armv7l-cpython-39/FormatHandling/phylip40_state.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/FormatHandling/phylip40_state.h 2022-06-04T17:45:28,190 creating build/temp.linux-armv7l-cpython-39/Alignment 2022-06-04T17:45:28,191 generating build/temp.linux-armv7l-cpython-39/Alignment/sequencesMatrix.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Alignment/sequencesMatrix.h 2022-06-04T17:45:28,197 generating build/temp.linux-armv7l-cpython-39/Alignment/Alignment.h from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/Alignment/Alignment.h 2022-06-04T17:45:28,202 creating build/temp.linux-armv7l-cpython-39/RawText 2022-06-04T17:45:28,203 generating build/temp.linux-armv7l-cpython-39/RawText/menu.txt from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/RawText/menu.txt 2022-06-04T17:45:28,212 generating build/temp.linux-armv7l-cpython-39/RawText/legacyMenu.txt from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/RawText/legacyMenu.txt 2022-06-04T17:45:28,218 generating build/temp.linux-armv7l-cpython-39/RawText/examples.txt from /tmp/pip-wheel-4o56ppan/pytrimal_0d3936b65625482eba19f0c08191bcc4/vendor/trimal/include/RawText/examples.txt 2022-06-04T17:45:28,221 generating build/temp.linux-armv7l-cpython-39/Cleaner.cpp from vendor/trimal/source/Cleaner.cpp 2022-06-04T17:45:28,222 copying vendor/trimal/source/Cleaner.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,230 generating build/temp.linux-armv7l-cpython-39/Alignment.cpp from vendor/trimal/source/Alignment/Alignment.cpp 2022-06-04T17:45:28,230 copying vendor/trimal/source/Alignment/Alignment.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,240 generating build/temp.linux-armv7l-cpython-39/sequencesMatrix.cpp from vendor/trimal/source/Alignment/sequencesMatrix.cpp 2022-06-04T17:45:28,240 copying vendor/trimal/source/Alignment/sequencesMatrix.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,244 generating build/temp.linux-armv7l-cpython-39/similarityMatrix.cpp from vendor/trimal/source/Statistics/similarityMatrix.cpp 2022-06-04T17:45:28,245 copying vendor/trimal/source/Statistics/similarityMatrix.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,250 generating build/temp.linux-armv7l-cpython-39/Mold.cpp from vendor/trimal/source/Statistics/Mold.cpp 2022-06-04T17:45:28,250 copying vendor/trimal/source/Statistics/Mold.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,255 generating build/temp.linux-armv7l-cpython-39/Gaps.cpp from vendor/trimal/source/Statistics/Gaps.cpp 2022-06-04T17:45:28,255 copying vendor/trimal/source/Statistics/Gaps.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,264 generating build/temp.linux-armv7l-cpython-39/Manager.cpp from vendor/trimal/source/Statistics/Manager.cpp 2022-06-04T17:45:28,265 copying vendor/trimal/source/Statistics/Manager.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,271 generating build/temp.linux-armv7l-cpython-39/Similarity.cpp from vendor/trimal/source/Statistics/Similarity.cpp 2022-06-04T17:45:28,272 copying vendor/trimal/source/Statistics/Similarity.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,285 generating build/temp.linux-armv7l-cpython-39/Consistency.cpp from vendor/trimal/source/Statistics/Consistency.cpp 2022-06-04T17:45:28,287 copying vendor/trimal/source/Statistics/Consistency.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,293 generating build/temp.linux-armv7l-cpython-39/errorMessages.cpp from vendor/trimal/source/reportMessages/errorMessages.cpp 2022-06-04T17:45:28,294 copying vendor/trimal/source/reportMessages/errorMessages.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,304 generating build/temp.linux-armv7l-cpython-39/infoMessages.cpp from vendor/trimal/source/reportMessages/infoMessages.cpp 2022-06-04T17:45:28,305 copying vendor/trimal/source/reportMessages/infoMessages.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,308 generating build/temp.linux-armv7l-cpython-39/warningMessages.cpp from vendor/trimal/source/reportMessages/warningMessages.cpp 2022-06-04T17:45:28,308 copying vendor/trimal/source/reportMessages/warningMessages.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,311 generating build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp from vendor/trimal/source/FormatHandling/fasta_m10_state.cpp 2022-06-04T17:45:28,312 copying vendor/trimal/source/FormatHandling/fasta_m10_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,316 generating build/temp.linux-armv7l-cpython-39/phylip32_state.cpp from vendor/trimal/source/FormatHandling/phylip32_state.cpp 2022-06-04T17:45:28,317 copying vendor/trimal/source/FormatHandling/phylip32_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,326 generating build/temp.linux-armv7l-cpython-39/mega_interleaved_state.cpp from vendor/trimal/source/FormatHandling/mega_interleaved_state.cpp 2022-06-04T17:45:28,326 copying vendor/trimal/source/FormatHandling/mega_interleaved_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,330 generating build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp from vendor/trimal/source/FormatHandling/mega_sequential_state.cpp 2022-06-04T17:45:28,331 copying vendor/trimal/source/FormatHandling/mega_sequential_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,335 generating build/temp.linux-armv7l-cpython-39/fasta_state.cpp from vendor/trimal/source/FormatHandling/fasta_state.cpp 2022-06-04T17:45:28,335 copying vendor/trimal/source/FormatHandling/fasta_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,339 generating build/temp.linux-armv7l-cpython-39/phylip_paml_state.cpp from vendor/trimal/source/FormatHandling/phylip_paml_state.cpp 2022-06-04T17:45:28,339 copying vendor/trimal/source/FormatHandling/phylip_paml_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,349 generating build/temp.linux-armv7l-cpython-39/pir_state.cpp from vendor/trimal/source/FormatHandling/pir_state.cpp 2022-06-04T17:45:28,349 copying vendor/trimal/source/FormatHandling/pir_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,356 generating build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.cpp from vendor/trimal/source/FormatHandling/phylip_paml_m10_state.cpp 2022-06-04T17:45:28,357 copying vendor/trimal/source/FormatHandling/phylip_paml_m10_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,360 generating build/temp.linux-armv7l-cpython-39/clustal_state.cpp from vendor/trimal/source/FormatHandling/clustal_state.cpp 2022-06-04T17:45:28,360 copying vendor/trimal/source/FormatHandling/clustal_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,364 generating build/temp.linux-armv7l-cpython-39/htmlreport_state.cpp from vendor/trimal/source/FormatHandling/htmlreport_state.cpp 2022-06-04T17:45:28,365 copying vendor/trimal/source/FormatHandling/htmlreport_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,368 generating build/temp.linux-armv7l-cpython-39/nexus_state.cpp from vendor/trimal/source/FormatHandling/nexus_state.cpp 2022-06-04T17:45:28,369 copying vendor/trimal/source/FormatHandling/nexus_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,372 generating build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp from vendor/trimal/source/FormatHandling/phylip40_m10_state.cpp 2022-06-04T17:45:28,373 copying vendor/trimal/source/FormatHandling/phylip40_m10_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,376 generating build/temp.linux-armv7l-cpython-39/nexus_m10_state.cpp from vendor/trimal/source/FormatHandling/nexus_m10_state.cpp 2022-06-04T17:45:28,377 copying vendor/trimal/source/FormatHandling/nexus_m10_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,381 generating build/temp.linux-armv7l-cpython-39/phylip40_state.cpp from vendor/trimal/source/FormatHandling/phylip40_state.cpp 2022-06-04T17:45:28,381 copying vendor/trimal/source/FormatHandling/phylip40_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,385 generating build/temp.linux-armv7l-cpython-39/phylip32_m10_state.cpp from vendor/trimal/source/FormatHandling/phylip32_m10_state.cpp 2022-06-04T17:45:28,385 copying vendor/trimal/source/FormatHandling/phylip32_m10_state.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,389 generating build/temp.linux-armv7l-cpython-39/BaseFormatHandler.cpp from vendor/trimal/source/FormatHandling/BaseFormatHandler.cpp 2022-06-04T17:45:28,389 copying vendor/trimal/source/FormatHandling/BaseFormatHandler.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,393 generating build/temp.linux-armv7l-cpython-39/utils.cpp from vendor/trimal/source/utils.cpp 2022-06-04T17:45:28,394 copying vendor/trimal/source/utils.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,399 generating build/temp.linux-armv7l-cpython-39/InternalBenchmarker.cpp from vendor/trimal/source/InternalBenchmarker.cpp 2022-06-04T17:45:28,400 copying vendor/trimal/source/InternalBenchmarker.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,404 generating build/temp.linux-armv7l-cpython-39/trimalManager.cpp from vendor/trimal/source/trimalManager.cpp 2022-06-04T17:45:28,404 copying vendor/trimal/source/trimalManager.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,413 generating build/temp.linux-armv7l-cpython-39/VCFHandler.cpp from vendor/trimal/source/VCFHandler.cpp 2022-06-04T17:45:28,413 copying vendor/trimal/source/VCFHandler.cpp -> build/temp.linux-armv7l-cpython-39 2022-06-04T17:45:28,419 generating build/temp.linux-armv7l-cpython-39/Cleaner.o from build/temp.linux-armv7l-cpython-39/Cleaner.cpp 2022-06-04T17:45:28,420 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Cleaner.cpp -o build/temp.linux-armv7l-cpython-39/Cleaner.o 2022-06-04T17:45:29,516 build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1449: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2022-06-04T17:45:29,517 1449 | #pragma omp parallel for num_threads(NUMTHREADS) if(alig->originalNumberOfSequences>MINPARALLELSIZE) 2022-06-04T17:45:29,517 | 2022-06-04T17:45:29,517 build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1457: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2022-06-04T17:45:29,518 1457 | #pragma omp parallel for num_threads(NUMTHREADS) private(j, k, hit, dst) if(alig->originalNumberOfSequences>MINPARALLELSIZE) 2022-06-04T17:45:29,518 | 2022-06-04T17:45:32,728 build/temp.linux-armv7l-cpython-39/Cleaner.cpp: In member function ‘Alignment* Cleaner::cleanStrict(int, const int*, float, const float*, bool, bool)’: 2022-06-04T17:45:32,728 build/temp.linux-armv7l-cpython-39/Cleaner.cpp:519:12: warning: unused variable ‘x’ [-Wunused-variable] 2022-06-04T17:45:32,729 519 | int i, x, pos, counter, lenBlock; 2022-06-04T17:45:32,729 | ^ 2022-06-04T17:45:32,765 build/temp.linux-armv7l-cpython-39/Cleaner.cpp: In member function ‘Alignment* Cleaner::getClustering(float)’: 2022-06-04T17:45:32,765 build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1217:12: warning: unused variable ‘j’ [-Wunused-variable] 2022-06-04T17:45:32,766 1217 | int i, j, *clustering; 2022-06-04T17:45:32,766 | ^ 2022-06-04T17:45:32,778 build/temp.linux-armv7l-cpython-39/Cleaner.cpp: In member function ‘void Cleaner::removeAllGapsSeqsAndCols(bool, bool)’: 2022-06-04T17:45:32,779 build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1382:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:45:32,779 1382 | for (j = 0; j < alig->sequences[i].length(); j++) { 2022-06-04T17:45:32,780 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:45:32,780 build/temp.linux-armv7l-cpython-39/Cleaner.cpp:1393:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:45:32,780 1393 | if (j == alig->sequences[i].length()) { 2022-06-04T17:45:32,781 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:45:41,906 generating build/temp.linux-armv7l-cpython-39/Alignment.o from build/temp.linux-armv7l-cpython-39/Alignment.cpp 2022-06-04T17:45:41,907 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Alignment.cpp -o build/temp.linux-armv7l-cpython-39/Alignment.o 2022-06-04T17:45:42,814 build/temp.linux-armv7l-cpython-39/Alignment.cpp:395: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2022-06-04T17:45:42,814 395 | #pragma omp parallel for num_threads(NUMTHREADS) if(numberOfSequences>MINPARALLELSIZE) 2022-06-04T17:45:42,815 | 2022-06-04T17:45:42,815 build/temp.linux-armv7l-cpython-39/Alignment.cpp:398: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2022-06-04T17:45:42,816 398 | #pragma omp parallel for num_threads(NUMTHREADS) collapse(2) private(k, shared, referenceLength) if(numberOfSequences>MINPARALLELSIZE) 2022-06-04T17:45:42,816 | 2022-06-04T17:45:42,819 build/temp.linux-armv7l-cpython-39/Alignment.cpp:930: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2022-06-04T17:45:42,819 930 | #pragma omp parallel for private(k, mx, avg, pos) reduction(+: avgSeq, maxAvgSeq) num_threads(NUMTHREADS) if(originalNumberOfSequences>MINPARALLELSIZE) 2022-06-04T17:45:42,820 | 2022-06-04T17:45:45,965 build/temp.linux-armv7l-cpython-39/Alignment.cpp: In member function ‘Alignment* Alignment::getTranslationCDS(Alignment*)’: 2022-06-04T17:45:45,965 build/temp.linux-armv7l-cpython-39/Alignment.cpp:204:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:45:45,966 204 | for (y = 0, counter = 0; y < ProtAlig->sequences[x].size(); y++) { 2022-06-04T17:45:45,966 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:45:45,993 build/temp.linux-armv7l-cpython-39/Alignment.cpp: In member function ‘bool Alignment::prepareCodingSequence(bool, bool, Alignment*)’: 2022-06-04T17:45:45,993 build/temp.linux-armv7l-cpython-39/Alignment.cpp:614:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-06-04T17:45:45,994 614 | if ((found != string::npos) && (((int) found % 3) == 0)) { 2022-06-04T17:45:45,994 | ~~~~~~^~~~~~~~~~~~~~~ 2022-06-04T17:45:46,000 build/temp.linux-armv7l-cpython-39/Alignment.cpp:641:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-06-04T17:45:46,001 641 | } while (found != string::npos); 2022-06-04T17:45:46,001 | ~~~~~~^~~~~~~~~~~~~~~ 2022-06-04T17:45:46,001 build/temp.linux-armv7l-cpython-39/Alignment.cpp:651:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-06-04T17:45:46,002 651 | if ((found != string::npos) && (((int) found % 3) == 0)) { 2022-06-04T17:45:46,002 | ~~~~~~^~~~~~~~~~~~~~~ 2022-06-04T17:45:46,008 build/temp.linux-armv7l-cpython-39/Alignment.cpp:676:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-06-04T17:45:46,009 676 | } while (found != string::npos); 2022-06-04T17:45:46,009 | ~~~~~~^~~~~~~~~~~~~~~ 2022-06-04T17:45:46,009 build/temp.linux-armv7l-cpython-39/Alignment.cpp:685:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-06-04T17:45:46,010 685 | if ((found != string::npos) && (((int) found % 3) == 0)) { 2022-06-04T17:45:46,010 | ~~~~~~^~~~~~~~~~~~~~~ 2022-06-04T17:45:46,016 build/temp.linux-armv7l-cpython-39/Alignment.cpp:711:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-06-04T17:45:46,016 711 | } while (found != string::npos); 2022-06-04T17:45:46,017 | ~~~~~~^~~~~~~~~~~~~~~ 2022-06-04T17:45:46,037 build/temp.linux-armv7l-cpython-39/Alignment.cpp: In member function ‘bool Alignment::fillMatrices(bool, bool)’: 2022-06-04T17:45:46,037 build/temp.linux-armv7l-cpython-39/Alignment.cpp:810:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:45:46,038 810 | for (j = 0; j < sequences[i].length(); j++) 2022-06-04T17:45:46,038 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:45:46,042 build/temp.linux-armv7l-cpython-39/Alignment.cpp:837:35: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-06-04T17:45:46,042 837 | if (sequences[i].length() != numberOfResidues) { 2022-06-04T17:45:46,043 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2022-06-04T17:45:46,047 build/temp.linux-armv7l-cpython-39/Alignment.cpp: In member function ‘void Alignment::printAlignmentInfo(std::ostream&)’: 2022-06-04T17:45:46,048 build/temp.linux-armv7l-cpython-39/Alignment.cpp:889:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:45:46,048 889 | for (j = 0, valid_res = 0; j < sequences[i].length(); j++) 2022-06-04T17:45:46,048 | ~~^~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:46:12,743 generating build/temp.linux-armv7l-cpython-39/sequencesMatrix.o from build/temp.linux-armv7l-cpython-39/sequencesMatrix.cpp 2022-06-04T17:46:12,744 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/sequencesMatrix.cpp -o build/temp.linux-armv7l-cpython-39/sequencesMatrix.o 2022-06-04T17:46:17,603 generating build/temp.linux-armv7l-cpython-39/similarityMatrix.o from build/temp.linux-armv7l-cpython-39/similarityMatrix.cpp 2022-06-04T17:46:17,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/similarityMatrix.cpp -o build/temp.linux-armv7l-cpython-39/similarityMatrix.o 2022-06-04T17:46:22,924 generating build/temp.linux-armv7l-cpython-39/Mold.o from build/temp.linux-armv7l-cpython-39/Mold.cpp 2022-06-04T17:46:22,925 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Mold.cpp -o build/temp.linux-armv7l-cpython-39/Mold.o 2022-06-04T17:46:30,979 generating build/temp.linux-armv7l-cpython-39/Gaps.o from build/temp.linux-armv7l-cpython-39/Gaps.cpp 2022-06-04T17:46:30,980 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Gaps.cpp -o build/temp.linux-armv7l-cpython-39/Gaps.o 2022-06-04T17:46:39,665 generating build/temp.linux-armv7l-cpython-39/Manager.o from build/temp.linux-armv7l-cpython-39/Manager.cpp 2022-06-04T17:46:39,667 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Manager.cpp -o build/temp.linux-armv7l-cpython-39/Manager.o 2022-06-04T17:46:44,167 generating build/temp.linux-armv7l-cpython-39/Similarity.o from build/temp.linux-armv7l-cpython-39/Similarity.cpp 2022-06-04T17:46:44,168 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Similarity.cpp -o build/temp.linux-armv7l-cpython-39/Similarity.o 2022-06-04T17:46:44,984 build/temp.linux-armv7l-cpython-39/Similarity.cpp:115: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2022-06-04T17:46:44,985 115 | #pragma omp parallel for num_threads(NUMTHREADS) if(alig->originalNumberOfSequences>MINPARALLELSIZE) 2022-06-04T17:46:44,985 | 2022-06-04T17:46:44,986 build/temp.linux-armv7l-cpython-39/Similarity.cpp:124: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2022-06-04T17:46:44,986 124 | #pragma omp parallel for num_threads(NUMTHREADS) private(j, k, sum, length) if(alig->originalNumberOfSequences>MINPARALLELSIZE) 2022-06-04T17:46:44,986 | 2022-06-04T17:46:53,210 generating build/temp.linux-armv7l-cpython-39/Consistency.o from build/temp.linux-armv7l-cpython-39/Consistency.cpp 2022-06-04T17:46:53,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/Consistency.cpp -o build/temp.linux-armv7l-cpython-39/Consistency.o 2022-06-04T17:47:05,641 generating build/temp.linux-armv7l-cpython-39/errorMessages.o from build/temp.linux-armv7l-cpython-39/errorMessages.cpp 2022-06-04T17:47:05,643 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/errorMessages.cpp -o build/temp.linux-armv7l-cpython-39/errorMessages.o 2022-06-04T17:47:10,384 generating build/temp.linux-armv7l-cpython-39/infoMessages.o from build/temp.linux-armv7l-cpython-39/infoMessages.cpp 2022-06-04T17:47:10,386 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/infoMessages.cpp -o build/temp.linux-armv7l-cpython-39/infoMessages.o 2022-06-04T17:47:14,316 generating build/temp.linux-armv7l-cpython-39/warningMessages.o from build/temp.linux-armv7l-cpython-39/warningMessages.cpp 2022-06-04T17:47:14,317 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/warningMessages.cpp -o build/temp.linux-armv7l-cpython-39/warningMessages.o 2022-06-04T17:47:18,280 generating build/temp.linux-armv7l-cpython-39/fasta_m10_state.o from build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp 2022-06-04T17:47:18,280 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/fasta_m10_state.o 2022-06-04T17:47:21,994 build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp: In member function ‘virtual bool FormatHandling::fasta_m10_state::SaveAlignment(const Alignment&, std::ostream*)’: 2022-06-04T17:47:21,995 build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:21,995 95 | for (j = 0, k = 0; j < alignment.sequences[i].length(); j++) 2022-06-04T17:47:21,996 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:21,996 build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp:99:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:21,997 99 | if (!lastcharIsnewline && j == alignment.sequences[i].length() -1 ) 2022-06-04T17:47:21,997 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:21,999 build/temp.linux-armv7l-cpython-39/fasta_m10_state.cpp:110:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:21,999 110 | if ((k % 60 == 0 || j == alignment.sequences[i].length() - 1)) 2022-06-04T17:47:22,000 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:23,576 generating build/temp.linux-armv7l-cpython-39/phylip32_state.o from build/temp.linux-armv7l-cpython-39/phylip32_state.cpp 2022-06-04T17:47:23,577 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip32_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip32_state.o 2022-06-04T17:47:29,676 generating build/temp.linux-armv7l-cpython-39/mega_interleaved_state.o from build/temp.linux-armv7l-cpython-39/mega_interleaved_state.cpp 2022-06-04T17:47:29,684 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/mega_interleaved_state.cpp -o build/temp.linux-armv7l-cpython-39/mega_interleaved_state.o 2022-06-04T17:47:35,312 generating build/temp.linux-armv7l-cpython-39/mega_sequential_state.o from build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp 2022-06-04T17:47:35,312 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp -o build/temp.linux-armv7l-cpython-39/mega_sequential_state.o 2022-06-04T17:47:39,063 build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp: In member function ‘virtual bool FormatHandling::mega_sequential_state::SaveAlignment(const Alignment&, std::ostream*)’: 2022-06-04T17:47:39,063 build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp:335:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:39,064 335 | for(j = 0, l = 0; j < alignment.sequences[i].length(); j ++) 2022-06-04T17:47:39,064 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:39,070 build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp:289:15: warning: unused variable ‘k’ [-Wunused-variable] 2022-06-04T17:47:39,070 289 | int i, j, k, l, m; 2022-06-04T17:47:39,070 | ^ 2022-06-04T17:47:39,071 build/temp.linux-armv7l-cpython-39/mega_sequential_state.cpp:289:21: warning: unused variable ‘m’ [-Wunused-variable] 2022-06-04T17:47:39,071 289 | int i, j, k, l, m; 2022-06-04T17:47:39,071 | ^ 2022-06-04T17:47:41,466 generating build/temp.linux-armv7l-cpython-39/fasta_state.o from build/temp.linux-armv7l-cpython-39/fasta_state.cpp 2022-06-04T17:47:41,467 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/fasta_state.cpp -o build/temp.linux-armv7l-cpython-39/fasta_state.o 2022-06-04T17:47:45,187 build/temp.linux-armv7l-cpython-39/fasta_state.cpp: In member function ‘virtual bool FormatHandling::fasta_state::SaveAlignment(const Alignment&, std::ostream*)’: 2022-06-04T17:47:45,188 build/temp.linux-armv7l-cpython-39/fasta_state.cpp:197:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:45,188 197 | for (j = 0, k = 0; j < alignment.sequences[i].length(); j++) 2022-06-04T17:47:45,188 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:45,190 build/temp.linux-armv7l-cpython-39/fasta_state.cpp:201:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:45,190 201 | if (!lastcharIsnewline && j == alignment.sequences[i].length() -1 ) 2022-06-04T17:47:45,190 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:45,194 build/temp.linux-armv7l-cpython-39/fasta_state.cpp:212:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:45,195 212 | if (k % 60 == 0 || j == alignment.sequences[i].length() -1 ) 2022-06-04T17:47:45,195 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:47,218 generating build/temp.linux-armv7l-cpython-39/phylip_paml_state.o from build/temp.linux-armv7l-cpython-39/phylip_paml_state.cpp 2022-06-04T17:47:47,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip_paml_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip_paml_state.o 2022-06-04T17:47:52,306 generating build/temp.linux-armv7l-cpython-39/pir_state.o from build/temp.linux-armv7l-cpython-39/pir_state.cpp 2022-06-04T17:47:52,307 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/pir_state.cpp -o build/temp.linux-armv7l-cpython-39/pir_state.o 2022-06-04T17:47:56,025 build/temp.linux-armv7l-cpython-39/pir_state.cpp: In member function ‘virtual bool FormatHandling::pir_state::SaveAlignment(const Alignment&, std::ostream*)’: 2022-06-04T17:47:56,026 build/temp.linux-armv7l-cpython-39/pir_state.cpp:223:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:56,026 223 | for (j = 0, k = 0, l = 0; j < alignment.sequences[i].length(); j++) { 2022-06-04T17:47:56,027 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:56,031 build/temp.linux-armv7l-cpython-39/pir_state.cpp:231:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:47:56,031 231 | if (j == alignment.sequences[i].length() - 1); 2022-06-04T17:47:56,031 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:47:56,036 build/temp.linux-armv7l-cpython-39/pir_state.cpp:184:18: warning: variable ‘l’ set but not used [-Wunused-but-set-variable] 2022-06-04T17:47:56,037 184 | int i, j, k, l; 2022-06-04T17:47:56,037 | ^ 2022-06-04T17:47:58,074 generating build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.o from build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.cpp 2022-06-04T17:47:58,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.o 2022-06-04T17:48:03,236 generating build/temp.linux-armv7l-cpython-39/clustal_state.o from build/temp.linux-armv7l-cpython-39/clustal_state.cpp 2022-06-04T17:48:03,237 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/clustal_state.cpp -o build/temp.linux-armv7l-cpython-39/clustal_state.o 2022-06-04T17:48:09,126 generating build/temp.linux-armv7l-cpython-39/htmlreport_state.o from build/temp.linux-armv7l-cpython-39/htmlreport_state.cpp 2022-06-04T17:48:09,127 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/htmlreport_state.cpp -o build/temp.linux-armv7l-cpython-39/htmlreport_state.o 2022-06-04T17:48:14,252 generating build/temp.linux-armv7l-cpython-39/nexus_state.o from build/temp.linux-armv7l-cpython-39/nexus_state.cpp 2022-06-04T17:48:14,253 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/nexus_state.cpp -o build/temp.linux-armv7l-cpython-39/nexus_state.o 2022-06-04T17:48:21,386 generating build/temp.linux-armv7l-cpython-39/phylip40_m10_state.o from build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp 2022-06-04T17:48:21,387 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip40_m10_state.o 2022-06-04T17:48:25,959 build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp: In member function ‘virtual bool FormatHandling::phylip40_m10_state::SaveAlignment(const Alignment&, std::ostream*)’: 2022-06-04T17:48:25,959 build/temp.linux-armv7l-cpython-39/phylip40_m10_state.cpp:104:19: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-06-04T17:48:25,960 104 | for (i = k; i < alignment.originalNumberOfResidues; i=k) 2022-06-04T17:48:25,960 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:48:26,701 generating build/temp.linux-armv7l-cpython-39/nexus_m10_state.o from build/temp.linux-armv7l-cpython-39/nexus_m10_state.cpp 2022-06-04T17:48:26,703 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/nexus_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/nexus_m10_state.o 2022-06-04T17:48:33,346 generating build/temp.linux-armv7l-cpython-39/phylip40_state.o from build/temp.linux-armv7l-cpython-39/phylip40_state.cpp 2022-06-04T17:48:33,347 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip40_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip40_state.o 2022-06-04T17:48:39,429 generating build/temp.linux-armv7l-cpython-39/phylip32_m10_state.o from build/temp.linux-armv7l-cpython-39/phylip32_m10_state.cpp 2022-06-04T17:48:39,430 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/phylip32_m10_state.cpp -o build/temp.linux-armv7l-cpython-39/phylip32_m10_state.o 2022-06-04T17:48:44,695 generating build/temp.linux-armv7l-cpython-39/BaseFormatHandler.o from build/temp.linux-armv7l-cpython-39/BaseFormatHandler.cpp 2022-06-04T17:48:44,696 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/BaseFormatHandler.cpp -o build/temp.linux-armv7l-cpython-39/BaseFormatHandler.o 2022-06-04T17:48:56,797 generating build/temp.linux-armv7l-cpython-39/utils.o from build/temp.linux-armv7l-cpython-39/utils.cpp 2022-06-04T17:48:56,799 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/utils.cpp -o build/temp.linux-armv7l-cpython-39/utils.o 2022-06-04T17:48:59,991 build/temp.linux-armv7l-cpython-39/utils.cpp: In function ‘std::string utils::removeCharacter(char, std::string)’: 2022-06-04T17:48:59,992 build/temp.linux-armv7l-cpython-39/utils.cpp:490:20: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-06-04T17:48:59,992 490 | while (pos != (int) std::string::npos) { 2022-06-04T17:48:59,993 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:00,013 build/temp.linux-armv7l-cpython-39/utils.cpp: In function ‘int* utils::readNumbers(const string&)’: 2022-06-04T17:49:00,014 build/temp.linux-armv7l-cpython-39/utils.cpp:632:52: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-06-04T17:49:00,014 632 | while ((comma = line.find(',', comma + 1)) != (int) std::string::npos) 2022-06-04T17:49:00,014 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:00,015 build/temp.linux-armv7l-cpython-39/utils.cpp:646:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-06-04T17:49:00,015 646 | if (((separ < comma) || (comma == (int) std::string::npos)) && (separ != (int) std::string::npos)) { 2022-06-04T17:49:00,016 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:00,016 build/temp.linux-armv7l-cpython-39/utils.cpp:646:83: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-06-04T17:49:00,017 646 | if (((separ < comma) || (comma == (int) std::string::npos)) && (separ != (int) std::string::npos)) { 2022-06-04T17:49:00,017 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:00,017 build/temp.linux-armv7l-cpython-39/utils.cpp:650:50: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-06-04T17:49:00,018 650 | } else if ((separ > comma) || (separ == (int) std::string::npos)) { 2022-06-04T17:49:00,018 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:00,019 build/temp.linux-armv7l-cpython-39/utils.cpp:666:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-06-04T17:49:00,019 666 | if (comma == (int) std::string::npos) 2022-06-04T17:49:00,019 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:05,936 generating build/temp.linux-armv7l-cpython-39/InternalBenchmarker.o from build/temp.linux-armv7l-cpython-39/InternalBenchmarker.cpp 2022-06-04T17:49:05,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/InternalBenchmarker.cpp -o build/temp.linux-armv7l-cpython-39/InternalBenchmarker.o 2022-06-04T17:49:06,104 generating build/temp.linux-armv7l-cpython-39/trimalManager.o from build/temp.linux-armv7l-cpython-39/trimalManager.cpp 2022-06-04T17:49:06,106 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/trimalManager.cpp -o build/temp.linux-armv7l-cpython-39/trimalManager.o 2022-06-04T17:49:10,050 In file included from build/temp.linux-armv7l-cpython-39/trimalManager.cpp:42: 2022-06-04T17:49:10,051 build/temp.linux-armv7l-cpython-39/VCFHandler.h: In constructor ‘ngs::__internal::vcfFeature::vcfFeature()’: 2022-06-04T17:49:10,051 build/temp.linux-armv7l-cpython-39/VCFHandler.h:87:19: warning: ‘ngs::__internal::vcfFeature::quality’ will be initialized after [-Wreorder] 2022-06-04T17:49:10,051 87 | float quality; 2022-06-04T17:49:10,052 | ^~~~~~~ 2022-06-04T17:49:10,052 build/temp.linux-armv7l-cpython-39/VCFHandler.h:85:18: warning: ‘bool ngs::__internal::vcfFeature::filter’ [-Wreorder] 2022-06-04T17:49:10,053 85 | bool filter; 2022-06-04T17:49:10,053 | ^~~~~~ 2022-06-04T17:49:10,053 build/temp.linux-armv7l-cpython-39/VCFHandler.h:96:13: warning: when initialized here [-Wreorder] 2022-06-04T17:49:10,054 96 | vcfFeature() : position(0), quality(0.0F), filter(false), readDepthIndex(0) 2022-06-04T17:49:10,054 | ^~~~~~~~~~ 2022-06-04T17:49:10,406 build/temp.linux-armv7l-cpython-39/trimalManager.cpp: In member function ‘bool trimAlManager::check_outputs_coincidence()’: 2022-06-04T17:49:10,406 build/temp.linux-armv7l-cpython-39/trimalManager.cpp:1419:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::array::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:10,407 1419 | for (int i = 0, x = 0; i < outFiles.size(); i++) { 2022-06-04T17:49:10,407 | ~~^~~~~~~~~~~~~~~~~ 2022-06-04T17:49:10,407 build/temp.linux-armv7l-cpython-39/trimalManager.cpp:1421:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::array::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:10,408 1421 | for (x = i + 1; x < outFiles.size(); x++) { 2022-06-04T17:49:10,408 | ~~^~~~~~~~~~~~~~~~~ 2022-06-04T17:49:32,109 generating build/temp.linux-armv7l-cpython-39/VCFHandler.o from build/temp.linux-armv7l-cpython-39/VCFHandler.cpp 2022-06-04T17:49:32,111 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -std=c++11 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/VCFHandler.cpp -o build/temp.linux-armv7l-cpython-39/VCFHandler.o 2022-06-04T17:49:35,706 In file included from build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:30: 2022-06-04T17:49:35,707 build/temp.linux-armv7l-cpython-39/VCFHandler.h: In constructor ‘ngs::__internal::vcfFeature::vcfFeature()’: 2022-06-04T17:49:35,707 build/temp.linux-armv7l-cpython-39/VCFHandler.h:87:19: warning: ‘ngs::__internal::vcfFeature::quality’ will be initialized after [-Wreorder] 2022-06-04T17:49:35,708 87 | float quality; 2022-06-04T17:49:35,708 | ^~~~~~~ 2022-06-04T17:49:35,708 build/temp.linux-armv7l-cpython-39/VCFHandler.h:85:18: warning: ‘bool ngs::__internal::vcfFeature::filter’ [-Wreorder] 2022-06-04T17:49:35,709 85 | bool filter; 2022-06-04T17:49:35,709 | ^~~~~~ 2022-06-04T17:49:35,709 build/temp.linux-armv7l-cpython-39/VCFHandler.h:96:13: warning: when initialized here [-Wreorder] 2022-06-04T17:49:35,710 96 | vcfFeature() : position(0), quality(0.0F), filter(false), readDepthIndex(0) 2022-06-04T17:49:35,710 | ^~~~~~~~~~ 2022-06-04T17:49:35,755 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘bool ngs::__internal::checkContigsWithReference(const AlignmentVector&, const StringVector&)’: 2022-06-04T17:49:35,755 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:153:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,756 153 | for (i = 0; i < sources.size(); i++) { 2022-06-04T17:49:35,756 | ~~^~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,757 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:162:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,757 162 | if (i == sources.size()) { 2022-06-04T17:49:35,757 | ~~^~~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,770 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::increaseSequencesInAlignment(const AlignmentVector&, const StringVector&)’: 2022-06-04T17:49:35,771 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:198:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,771 198 | for (int i = 1; i < donors.size() + 1; i++) { 2022-06-04T17:49:35,772 | ~~^~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,785 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::applyVariantCallingFiles(const AlignmentVector&, const StringVector&, const StringVector&, const std::vector >&, float, float, bool, const char*)’: 2022-06-04T17:49:35,786 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:337:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,786 337 | for (int vcfIndex = 0; vcfIndex < filenames.size(); vcfIndex++) { 2022-06-04T17:49:35,787 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,787 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:360:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,788 360 | for (contigIndex = 0; contigIndex < contigs.size(); contigIndex++) 2022-06-04T17:49:35,788 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,789 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:365:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,789 365 | if (contigIndex == contigs.size()) { 2022-06-04T17:49:35,790 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,794 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:394:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,794 394 | for (int donorID = 0; donorID < feature.donorsInfo.size(); donorID++) 2022-06-04T17:49:35,795 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,842 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:397:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,842 397 | if (donorID >= donorsPositions[vcfIndex].size()) 2022-06-04T17:49:35,843 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,867 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::extractContigsFromLine(char*, ngs::StringVector&)’: 2022-06-04T17:49:35,867 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:528:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,868 528 | for (U = 0; U < contigs.size(); U++) 2022-06-04T17:49:35,868 | ~~^~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,868 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:533:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,869 533 | if (U == contigs.size()) 2022-06-04T17:49:35,869 | ~~^~~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,871 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::extractDonorsFromLine(char*, std::vector&, ngs::StringVector&)’: 2022-06-04T17:49:35,871 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:557:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,872 557 | for (U = 0; U < donors.size(); U++) { 2022-06-04T17:49:35,872 | ~~^~~~~~~~~~~~~~~ 2022-06-04T17:49:35,872 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:564:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,873 564 | if (U == donors.size()) { 2022-06-04T17:49:35,873 | ~~^~~~~~~~~~~~~~~~ 2022-06-04T17:49:35,875 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp: In function ‘void ngs::__internal::obtainContigsAndDonors(const StringVector&, ngs::StringVector&, ngs::StringVector&, std::vector >&)’: 2022-06-04T17:49:35,875 build/temp.linux-armv7l-cpython-39/VCFHandler.cpp:591:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022-06-04T17:49:35,875 591 | for (int C = 0; C < filenames.size(); C++) { 2022-06-04T17:49:35,876 | ~~^~~~~~~~~~~~~~~~~~ 2022-06-04T17:49:44,234 generating build/temp.linux-armv7l-cpython-39/libtrimal.a from build/temp.linux-armv7l-cpython-39/Cleaner.o, build/temp.linux-armv7l-cpython-39/Alignment.o, build/temp.linux-armv7l-cpython-39/sequencesMatrix.o, build/temp.linux-armv7l-cpython-39/similarityMatrix.o, build/temp.linux-armv7l-cpython-39/Mold.o, build/temp.linux-armv7l-cpython-39/Gaps.o, build/temp.linux-armv7l-cpython-39/Manager.o, build/temp.linux-armv7l-cpython-39/Similarity.o, build/temp.linux-armv7l-cpython-39/Consistency.o, build/temp.linux-armv7l-cpython-39/errorMessages.o, build/temp.linux-armv7l-cpython-39/infoMessages.o, build/temp.linux-armv7l-cpython-39/warningMessages.o, build/temp.linux-armv7l-cpython-39/fasta_m10_state.o, build/temp.linux-armv7l-cpython-39/phylip32_state.o, build/temp.linux-armv7l-cpython-39/mega_interleaved_state.o, build/temp.linux-armv7l-cpython-39/mega_sequential_state.o, build/temp.linux-armv7l-cpython-39/fasta_state.o, build/temp.linux-armv7l-cpython-39/phylip_paml_state.o, build/temp.linux-armv7l-cpython-39/pir_state.o, build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.o, build/temp.linux-armv7l-cpython-39/clustal_state.o, build/temp.linux-armv7l-cpython-39/htmlreport_state.o, build/temp.linux-armv7l-cpython-39/nexus_state.o, build/temp.linux-armv7l-cpython-39/phylip40_m10_state.o, build/temp.linux-armv7l-cpython-39/nexus_m10_state.o, build/temp.linux-armv7l-cpython-39/phylip40_state.o, build/temp.linux-armv7l-cpython-39/phylip32_m10_state.o, build/temp.linux-armv7l-cpython-39/BaseFormatHandler.o, build/temp.linux-armv7l-cpython-39/utils.o, build/temp.linux-armv7l-cpython-39/InternalBenchmarker.o, build/temp.linux-armv7l-cpython-39/trimalManager.o, build/temp.linux-armv7l-cpython-39/VCFHandler.o 2022-06-04T17:49:44,234 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libtrimal.a build/temp.linux-armv7l-cpython-39/Cleaner.o build/temp.linux-armv7l-cpython-39/Alignment.o build/temp.linux-armv7l-cpython-39/sequencesMatrix.o build/temp.linux-armv7l-cpython-39/similarityMatrix.o build/temp.linux-armv7l-cpython-39/Mold.o build/temp.linux-armv7l-cpython-39/Gaps.o build/temp.linux-armv7l-cpython-39/Manager.o build/temp.linux-armv7l-cpython-39/Similarity.o build/temp.linux-armv7l-cpython-39/Consistency.o build/temp.linux-armv7l-cpython-39/errorMessages.o build/temp.linux-armv7l-cpython-39/infoMessages.o build/temp.linux-armv7l-cpython-39/warningMessages.o build/temp.linux-armv7l-cpython-39/fasta_m10_state.o build/temp.linux-armv7l-cpython-39/phylip32_state.o build/temp.linux-armv7l-cpython-39/mega_interleaved_state.o build/temp.linux-armv7l-cpython-39/mega_sequential_state.o build/temp.linux-armv7l-cpython-39/fasta_state.o build/temp.linux-armv7l-cpython-39/phylip_paml_state.o build/temp.linux-armv7l-cpython-39/pir_state.o build/temp.linux-armv7l-cpython-39/phylip_paml_m10_state.o build/temp.linux-armv7l-cpython-39/clustal_state.o build/temp.linux-armv7l-cpython-39/htmlreport_state.o build/temp.linux-armv7l-cpython-39/nexus_state.o build/temp.linux-armv7l-cpython-39/phylip40_m10_state.o build/temp.linux-armv7l-cpython-39/nexus_m10_state.o build/temp.linux-armv7l-cpython-39/phylip40_state.o build/temp.linux-armv7l-cpython-39/phylip32_m10_state.o build/temp.linux-armv7l-cpython-39/BaseFormatHandler.o build/temp.linux-armv7l-cpython-39/utils.o build/temp.linux-armv7l-cpython-39/InternalBenchmarker.o build/temp.linux-armv7l-cpython-39/trimalManager.o build/temp.linux-armv7l-cpython-39/VCFHandler.o 2022-06-04T17:49:44,879 running build_ext 2022-06-04T17:49:57,506 Compiling pytrimal/_trimal.pyx because it changed. 2022-06-04T17:49:57,507 [1/1] Cythonizing pytrimal/_trimal.pyx 2022-06-04T17:49:57,507 building pytrimal._trimal with unix compiler 2022-06-04T17:49:57,508 building 'pytrimal._trimal' extension 2022-06-04T17:49:57,509 creating build/temp.linux-armv7l-cpython-39/pytrimal 2022-06-04T17:49:57,511 creating build/temp.linux-armv7l-cpython-39/pytrimal/patch 2022-06-04T17:49:57,512 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/_trimal.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/_trimal.o -std=c++11 2022-06-04T17:50:39,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipytrimal/patch -Ipytrimal -Iinclude -Ibuild/temp.linux-armv7l-cpython-39 -I/usr/include/python3.9 -c pytrimal/patch/reportsystem.cpp -o build/temp.linux-armv7l-cpython-39/pytrimal/patch/reportsystem.o -std=c++11 2022-06-04T17:50:44,299 pytrimal/patch/reportsystem.cpp: In member function ‘void reporting::reportManager::report(ErrorCode, const char*)’: 2022-06-04T17:50:44,299 pytrimal/patch/reportsystem.cpp:120:11: warning: unused variable ‘counter’ [-Wunused-variable] 2022-06-04T17:50:44,300 120 | int counter = 0; 2022-06-04T17:50:44,300 | ^~~~~~~ 2022-06-04T17:50:44,343 pytrimal/patch/reportsystem.cpp: In member function ‘void reporting::reportManager::report(WarningCode, const char*)’: 2022-06-04T17:50:44,344 pytrimal/patch/reportsystem.cpp:162:11: warning: unused variable ‘counter’ [-Wunused-variable] 2022-06-04T17:50:44,344 162 | int counter = 0; 2022-06-04T17:50:44,344 | ^~~~~~~ 2022-06-04T17:50:48,153 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pytrimal/_trimal.o build/temp.linux-armv7l-cpython-39/pytrimal/patch/reportsystem.o build/temp.linux-armv7l-cpython-39/libtrimal.a -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -ltrimal -ltrimal -o build/lib.linux-armv7l-cpython-39/pytrimal/_trimal.cpython-39-arm-linux-gnueabihf.so 2022-06-04T17:50:52,009 installing to build/bdist.linux-armv7l/wheel 2022-06-04T17:50:52,009 running install 2022-06-04T17:50:52,070 running install_lib 2022-06-04T17:50:52,674 creating build/bdist.linux-armv7l 2022-06-04T17:50:52,675 creating build/bdist.linux-armv7l/wheel 2022-06-04T17:50:52,678 creating build/bdist.linux-armv7l/wheel/pytrimal 2022-06-04T17:50:52,680 copying build/lib.linux-armv7l-cpython-39/pytrimal/_version.py -> build/bdist.linux-armv7l/wheel/pytrimal 2022-06-04T17:50:52,685 creating build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,688 creating build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,689 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.cons60.gt90.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,703 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.id70.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,710 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.cons40.gt40.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,723 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.strictplus.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,737 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/halorhodopsin.afa -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,752 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.gappyout.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,770 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.strict.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,781 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/pam70.json -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,784 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/example.001.AA.clw -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,788 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.id50.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,792 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,809 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.automated1.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,821 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/ENOG411BWBU.noallgaps.fasta -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,840 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests/data 2022-06-04T17:50:52,843 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_alignment.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,848 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_doctest.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,851 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/requirements.txt -> build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,854 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/__main__.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,858 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_similarity_matrix.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,861 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_automatic_trimmer.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,865 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,868 copying build/lib.linux-armv7l-cpython-39/pytrimal/tests/test_manual_trimmer.py -> build/bdist.linux-armv7l/wheel/pytrimal/tests 2022-06-04T17:50:52,871 copying build/lib.linux-armv7l-cpython-39/pytrimal/_trimal.pyi -> build/bdist.linux-armv7l/wheel/pytrimal 2022-06-04T17:50:52,875 copying build/lib.linux-armv7l-cpython-39/pytrimal/py.typed -> build/bdist.linux-armv7l/wheel/pytrimal 2022-06-04T17:50:52,878 copying build/lib.linux-armv7l-cpython-39/pytrimal/__init__.py -> build/bdist.linux-armv7l/wheel/pytrimal 2022-06-04T17:50:52,881 copying build/lib.linux-armv7l-cpython-39/pytrimal/_trimal.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pytrimal 2022-06-04T17:50:53,268 running install_egg_info 2022-06-04T17:50:54,505 running egg_info 2022-06-04T17:50:55,102 writing pytrimal.egg-info/PKG-INFO 2022-06-04T17:50:55,684 writing dependency_links to pytrimal.egg-info/dependency_links.txt 2022-06-04T17:50:59,120 writing top-level names to pytrimal.egg-info/top_level.txt 2022-06-04T17:50:59,189 reading manifest file 'pytrimal.egg-info/SOURCES.txt' 2022-06-04T17:50:59,254 reading manifest template 'MANIFEST.in' 2022-06-04T17:51:00,033 warning: no files found matching '*.h' under directory 'pytrimal' 2022-06-04T17:51:00,053 warning: no previously-included files matching '*.html' found under directory 'pytrimal' 2022-06-04T17:51:00,057 warning: no files found matching '*.h' under directory 'pytrimal/patch' 2022-06-04T17:51:00,059 warning: no files found matching '*.pxd' under directory 'pytrimal/patch' 2022-06-04T17:51:00,059 adding license file 'COPYING' 2022-06-04T17:51:00,096 writing manifest file 'pytrimal.egg-info/SOURCES.txt' 2022-06-04T17:51:00,100 Copying pytrimal.egg-info to build/bdist.linux-armv7l/wheel/pytrimal-0.1.2-py3.9.egg-info 2022-06-04T17:51:00,122 running install_scripts 2022-06-04T17:51:00,253 adding license file "COPYING" (matched pattern "COPYING*") 2022-06-04T17:51:00,312 creating build/bdist.linux-armv7l/wheel/pytrimal-0.1.2.dist-info/WHEEL 2022-06-04T17:51:00,318 creating '/tmp/pip-wheel-vufr17yh/tmpmlk4q_ha/pytrimal-0.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-06-04T17:51:00,322 adding 'pytrimal/__init__.py' 2022-06-04T17:51:03,757 adding 'pytrimal/_trimal.cpython-39-arm-linux-gnueabihf.so' 2022-06-04T17:51:03,912 adding 'pytrimal/_trimal.pyi' 2022-06-04T17:51:03,914 adding 'pytrimal/_version.py' 2022-06-04T17:51:03,917 adding 'pytrimal/py.typed' 2022-06-04T17:51:03,921 adding 'pytrimal/tests/__init__.py' 2022-06-04T17:51:03,923 adding 'pytrimal/tests/__main__.py' 2022-06-04T17:51:03,925 adding 'pytrimal/tests/requirements.txt' 2022-06-04T17:51:03,928 adding 'pytrimal/tests/test_alignment.py' 2022-06-04T17:51:03,930 adding 'pytrimal/tests/test_automatic_trimmer.py' 2022-06-04T17:51:03,933 adding 'pytrimal/tests/test_doctest.py' 2022-06-04T17:51:03,936 adding 'pytrimal/tests/test_manual_trimmer.py' 2022-06-04T17:51:03,938 adding 'pytrimal/tests/test_similarity_matrix.py' 2022-06-04T17:51:03,968 adding 'pytrimal/tests/data/ENOG411BWBU.automated1.fasta' 2022-06-04T17:51:04,000 adding 'pytrimal/tests/data/ENOG411BWBU.cons40.gt40.fasta' 2022-06-04T17:51:04,029 adding 'pytrimal/tests/data/ENOG411BWBU.cons60.gt90.fasta' 2022-06-04T17:51:04,067 adding 'pytrimal/tests/data/ENOG411BWBU.fasta' 2022-06-04T17:51:04,101 adding 'pytrimal/tests/data/ENOG411BWBU.gappyout.fasta' 2022-06-04T17:51:04,108 adding 'pytrimal/tests/data/ENOG411BWBU.id50.fasta' 2022-06-04T17:51:04,122 adding 'pytrimal/tests/data/ENOG411BWBU.id70.fasta' 2022-06-04T17:51:04,158 adding 'pytrimal/tests/data/ENOG411BWBU.noallgaps.fasta' 2022-06-04T17:51:04,185 adding 'pytrimal/tests/data/ENOG411BWBU.strict.fasta' 2022-06-04T17:51:04,207 adding 'pytrimal/tests/data/ENOG411BWBU.strictplus.fasta' 2022-06-04T17:51:04,212 adding 'pytrimal/tests/data/__init__.py' 2022-06-04T17:51:04,214 adding 'pytrimal/tests/data/example.001.AA.clw' 2022-06-04T17:51:04,230 adding 'pytrimal/tests/data/halorhodopsin.afa' 2022-06-04T17:51:04,236 adding 'pytrimal/tests/data/pam70.json' 2022-06-04T17:51:04,253 adding 'pytrimal-0.1.2.dist-info/COPYING' 2022-06-04T17:51:04,257 adding 'pytrimal-0.1.2.dist-info/METADATA' 2022-06-04T17:51:04,259 adding 'pytrimal-0.1.2.dist-info/WHEEL' 2022-06-04T17:51:04,261 adding 'pytrimal-0.1.2.dist-info/top_level.txt' 2022-06-04T17:51:04,263 adding 'pytrimal-0.1.2.dist-info/RECORD' 2022-06-04T17:51:04,386 removing build/bdist.linux-armv7l/wheel 2022-06-04T17:51:04,978 Building wheel for pytrimal (pyproject.toml): finished with status 'done' 2022-06-04T17:51:05,138 Created wheel for pytrimal: filename=pytrimal-0.1.2-cp39-cp39-linux_armv7l.whl size=2846724 sha256=8335602183caad582c8928ea691b7be0671b701f02fd9489681d90efd6708863 2022-06-04T17:51:05,141 Stored in directory: /tmp/pip-ephem-wheel-cache-dp4atcxe/wheels/53/f1/1e/15c4921e286a551cb214b223a8ec17c567fec376a774d8c560 2022-06-04T17:51:05,172 Successfully built pytrimal 2022-06-04T17:51:05,398 Removed build tracker: '/tmp/pip-build-tracker-4qyelrea'