2022-06-05T17:35:41,818 Created temporary directory: /tmp/pip-ephem-wheel-cache-tc2csayf
2022-06-05T17:35:41,825 Created temporary directory: /tmp/pip-req-tracker-iqovbkcs
2022-06-05T17:35:41,826 Initialized build tracking at /tmp/pip-req-tracker-iqovbkcs
2022-06-05T17:35:41,826 Created build tracker: /tmp/pip-req-tracker-iqovbkcs
2022-06-05T17:35:41,827 Entered build tracker: /tmp/pip-req-tracker-iqovbkcs
2022-06-05T17:35:41,828 Created temporary directory: /tmp/pip-wheel-6ki7qq8y
2022-06-05T17:35:41,899 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-06-05T17:35:41,903 2 location(s) to search for versions of gffutils:
2022-06-05T17:35:41,903 * https://pypi.org/simple/gffutils/
2022-06-05T17:35:41,903 * https://www.piwheels.org/simple/gffutils/
2022-06-05T17:35:41,903 Fetching project page and analyzing links: https://pypi.org/simple/gffutils/
2022-06-05T17:35:41,906 Getting page https://pypi.org/simple/gffutils/
2022-06-05T17:35:41,910 Found index url https://pypi.org/simple
2022-06-05T17:35:42,255   Found link https://files.pythonhosted.org/packages/d9/a5/3d6f46b049c1091efcc6f6d29e9d39470f5f8d62e17cdb6fd331526fd71b/gffutils-0.0.0.tar.gz#sha256=e02b331fdfcbc6095b53126281c7591fc82bdd44ebedee4b6bff4910e8e29883 (from https://pypi.org/simple/gffutils/), version: 0.0.0
2022-06-05T17:35:42,257   Found link https://files.pythonhosted.org/packages/86/64/6dab23af4bfb4052c66a8f1f174c95d59f8e797220bfe19dfd11122538d9/gffutils-0.7.tar.gz#sha256=1e03365ed45a1dafb8ff750a562930872dc09cdd86603e3f34c81a4183571546 (from https://pypi.org/simple/gffutils/), version: 0.7
2022-06-05T17:35:42,258   Found link https://files.pythonhosted.org/packages/f9/6a/b2cf512d0772c220431fbab8465abdb2d730bd6ac22a6816e023afa675b8/gffutils-0.8.tar.gz#sha256=5eda5e365352b3c7f84fe6cff4b4f69a2c8d7ba6ea5403d53e1bb7718cd3c13f (from https://pypi.org/simple/gffutils/), version: 0.8
2022-06-05T17:35:42,259   Found link https://files.pythonhosted.org/packages/07/52/5d10ce38562ed0b8468697e09f8898b45df543d5e9fe5b6c5a4a5aca6685/gffutils-0.8.1.tar.gz#sha256=1994525e35cbf32d1a5679e9bf708b84778fb760d7889c917dd7cb571bb06ff4 (from https://pypi.org/simple/gffutils/), version: 0.8.1
2022-06-05T17:35:42,260   Found link https://files.pythonhosted.org/packages/eb/89/e2e0c90b9be07b3ab650b7474971fbf0b1e5d4d29a2b03c676ffad9501bb/gffutils-0.8.2.tar.gz#sha256=fc85976687bb8ff6742daebd7e3d3fcbf47bfda4ab8ef7e02c8b155b733ba8ac (from https://pypi.org/simple/gffutils/), version: 0.8.2
2022-06-05T17:35:42,260   Found link https://files.pythonhosted.org/packages/3e/2b/1a5d72b043c024b86d573ceab15b464acd0638b912cd30ddce71e7d93112/gffutils-0.8.3.tar.gz#sha256=9f28733ed6f9603817691c0ac14078792f7f853054ee90bc401320a495d218f2 (from https://pypi.org/simple/gffutils/), version: 0.8.3
2022-06-05T17:35:42,261   Found link https://files.pythonhosted.org/packages/8d/00/6f4f59d109bbc421ad59faf64eb31cb90858a4a316c31eb49e09467f4a93/gffutils-0.8.3.1.tar.gz#sha256=6939ff831bb2e6a33a2c99d4c57ce64b1c517ca56be3014b4171d45a86964508 (from https://pypi.org/simple/gffutils/), version: 0.8.3.1
2022-06-05T17:35:42,262   Found link https://files.pythonhosted.org/packages/d8/a3/487db49cf8b35dd17d6360f464d3524b369365e5bd7964ac32b33a6fabab/gffutils-0.8.4rc1.tar.gz#sha256=63d3ec216bb395ff8d9f9033f8aa83f82130e4ef229273e37beb1034580da666 (from https://pypi.org/simple/gffutils/), version: 0.8.4rc1
2022-06-05T17:35:42,263   Found link https://files.pythonhosted.org/packages/25/9d/97c58a9a602e41e2797747fd94b6bd4aa82331178a074c4da966030045ba/gffutils-0.8.5.tar.gz#sha256=c5acd59c55662fe082fa78bc5d5ae383e73040f7610ef8d45b8bd62d9fae74d8 (from https://pypi.org/simple/gffutils/), version: 0.8.5
2022-06-05T17:35:42,264   Found link https://files.pythonhosted.org/packages/21/b1/0ecce3b0304048241da7e830196aa50d62dfe9c9bdbf4fb48aebbf1d363e/gffutils-0.8.6.tar.gz#sha256=6cdfb77b57ef22b5971e5d876bcc89e05a5e6194589d1e283b5e9d6df83fff46 (from https://pypi.org/simple/gffutils/), version: 0.8.6
2022-06-05T17:35:42,265   Found link https://files.pythonhosted.org/packages/40/bc/85541d291c6da6570deed2988206bb322afb8d5ede1e72fd267c440a286d/gffutils-0.8.6.1.tar.gz#sha256=e421a06ef916041946f6b1dc3ae85776524c6bc3578bdbdda5f7e98d8a3d8db4 (from https://pypi.org/simple/gffutils/), version: 0.8.6.1
2022-06-05T17:35:42,266   Found link https://files.pythonhosted.org/packages/d8/bf/b630f9a006d7380d79b344b41af548c73371844737f221a9d4a59d57f91e/gffutils-0.8.7.tar.gz#sha256=4fb2c95dbf7f98e537d00995eb7aa6bf36ee70fd9a707aa3df2202c898d54c01 (from https://pypi.org/simple/gffutils/), version: 0.8.7
2022-06-05T17:35:42,267   Found link https://files.pythonhosted.org/packages/a7/fa/3d8cd13f58540098f5efb3ec7dd33d1bb6a27ee06e377e1d6a2419b4be25/gffutils-0.8.7.1.tar.gz#sha256=0fd612cdf37b9aeb0d3504bd45acde1b00574554b84095a683688595337e94e6 (from https://pypi.org/simple/gffutils/), version: 0.8.7.1
2022-06-05T17:35:42,268   Found link https://files.pythonhosted.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz#sha256=e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b (from https://pypi.org/simple/gffutils/), version: 0.9
2022-06-05T17:35:42,269   Found link https://files.pythonhosted.org/packages/f0/cb/bbbde7e179aa5efe13f51afbef13a85a53632d94fc97755a2819d4d251c6/gffutils-0.10.tar.gz#sha256=9b1f5f30d93754e8c67503b94878dbd7d113a5acf8d04c4c363aa8a78a506b2d (from https://pypi.org/simple/gffutils/), version: 0.10
2022-06-05T17:35:42,270   Found link https://files.pythonhosted.org/packages/87/d6/f893f14fd6cf1c9e758259f6e0f9ba1ae03370988d8f1a3ea8d790ca5b06/gffutils-0.10.1.tar.gz#sha256=a8fc39006d7aa353147238160640e2210b168f7849cb99896be3fc9441e351cb (from https://pypi.org/simple/gffutils/), version: 0.10.1
2022-06-05T17:35:42,271   Found link https://files.pythonhosted.org/packages/eb/38/8f8f917d37175dea194c12d7c625d82e0b039169afe5c08f3609fbef5f9c/gffutils-0.11.0.tar.gz#sha256=4593bdf8bda2501b8e0c54cd3366fdaba04b211c86f43c0029e65869d15ec769 (from https://pypi.org/simple/gffutils/), version: 0.11.0
2022-06-05T17:35:42,271 Fetching project page and analyzing links: https://www.piwheels.org/simple/gffutils/
2022-06-05T17:35:42,272 Getting page https://www.piwheels.org/simple/gffutils/
2022-06-05T17:35:42,275 Found index url https://www.piwheels.org/simple
2022-06-05T17:35:42,535   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.10.1-py3-none-any.whl#sha256=5ef49126fc2ce3888acab72b8de390a1851ee39c7e97c44e04a3bd67c2d785cb (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,536   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.10-py3-none-any.whl#sha256=a0a5c59b160c35349aa71feadf2a5bd0f82acf3372cc5f137077c3d94babb938 (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,537   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.9-py3-none-any.whl#sha256=467fd84f30d0f2fca1ef1197c9794c050ca041b3c89fc2f717ff1b775ee263c7 (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,538   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.7.1-py3-none-any.whl#sha256=9373da862b66f89436246505d76107af3bdbbbe208bd387558c982cab9bb7a44 (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,538   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.7-py3-none-any.whl#sha256=4bee88653f846fd491426bc5b4474b346233c8224cf084be5e088b80a3e20864 (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,539   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.6.1-py3-none-any.whl#sha256=8dfce15146e0d0ae1ee7353676caa181d8728b9b2b6c53f9738ff539ba96e12e (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,540   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.6-py3-none-any.whl#sha256=fb0b3a2418537eacfd289c93c9e1f97e0179a43d1fefdcb26fa7074a236665f9 (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,540   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.5-py3-none-any.whl#sha256=efae4ef85e8f8d071bf4cdec1447ce2fac13c6453594d39c29aa351f90af43ab (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,541   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.4rc1-py3-none-any.whl#sha256=f5b02338e4b604e57f22582da42962d0e7d27f792e591c306530d116d2c1b7a4 (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,541   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.3.1-py3-none-any.whl#sha256=f9c7e10bac2007279e1fc859269bf697895138b08cd273a688044d6cc8d9e428 (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,542   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.3-py3-none-any.whl#sha256=1ceff7023c903f5e86de91e0c4ec4680ef3e7bef5547c96af0636f144f435c3d (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,542   Skipping link: No binaries permitted for gffutils: https://www.piwheels.org/simple/gffutils/gffutils-0.8.2-py3-none-any.whl#sha256=948a8856b9496f8a82cfa9fd9210b9ce6956396536fc506a67f84586faf94ce9 (from https://www.piwheels.org/simple/gffutils/)
2022-06-05T17:35:42,579 Given no hashes to check 1 links for project 'gffutils': discarding no candidates
2022-06-05T17:35:42,614 Collecting gffutils==0.11.0
2022-06-05T17:35:42,618   Created temporary directory: /tmp/pip-unpack-l1hirs76
2022-06-05T17:35:42,882   Downloading gffutils-0.11.0.tar.gz (1.6 MB)
2022-06-05T17:35:45,035   Added gffutils==0.11.0 from https://files.pythonhosted.org/packages/eb/38/8f8f917d37175dea194c12d7c625d82e0b039169afe5c08f3609fbef5f9c/gffutils-0.11.0.tar.gz#sha256=4593bdf8bda2501b8e0c54cd3366fdaba04b211c86f43c0029e65869d15ec769 to build tracker '/tmp/pip-req-tracker-iqovbkcs'
2022-06-05T17:35:45,037     Running setup.py (path:/tmp/pip-wheel-6ki7qq8y/gffutils_4a2492956dfe439da1dc1d5109cbdbcd/setup.py) egg_info for package gffutils
2022-06-05T17:35:45,040     Created temporary directory: /tmp/pip-pip-egg-info-53vyflm1
2022-06-05T17:35:45,041     Running command python setup.py egg_info
2022-06-05T17:35:47,206     running egg_info
2022-06-05T17:35:47,212     creating /tmp/pip-pip-egg-info-53vyflm1/gffutils.egg-info
2022-06-05T17:35:47,216     writing /tmp/pip-pip-egg-info-53vyflm1/gffutils.egg-info/PKG-INFO
2022-06-05T17:35:47,221     writing dependency_links to /tmp/pip-pip-egg-info-53vyflm1/gffutils.egg-info/dependency_links.txt
2022-06-05T17:35:47,226     writing top-level names to /tmp/pip-pip-egg-info-53vyflm1/gffutils.egg-info/top_level.txt
2022-06-05T17:35:47,230     writing requirements to /tmp/pip-pip-egg-info-53vyflm1/gffutils.egg-info/requires.txt
2022-06-05T17:35:47,234     writing manifest file '/tmp/pip-pip-egg-info-53vyflm1/gffutils.egg-info/SOURCES.txt'
2022-06-05T17:35:47,592     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing ' 0.11.0' to '0.11.0'
2022-06-05T17:35:47,593       warnings.warn(tmpl.format(**locals()))
2022-06-05T17:35:47,593     package init file 'gffutils/scripts/__init__.py' not found (or not a regular file)
2022-06-05T17:35:47,600     package init file 'gffutils/test/data/__init__.py' not found (or not a regular file)
2022-06-05T17:35:47,630     reading manifest file '/tmp/pip-pip-egg-info-53vyflm1/gffutils.egg-info/SOURCES.txt'
2022-06-05T17:35:47,634     reading manifest template 'MANIFEST.in'
2022-06-05T17:35:47,638     warning: no files found matching '*.rst' under directory 'docs/source'
2022-06-05T17:35:47,639     warning: no files found matching '*.py' under directory 'docs/source'
2022-06-05T17:35:47,640     warning: no files found matching '*' under directory 'docs/source/images'
2022-06-05T17:35:47,642     warning: no files found matching 'docs/Makefile'
2022-06-05T17:35:47,643     warning: no files found matching 'docs/make.bat'
2022-06-05T17:35:47,645     warning: no files found matching 'gffutils/test/data/__init__.py'
2022-06-05T17:35:47,648     warning: no files found matching 'gffutils/test/data/t.py'
2022-06-05T17:35:47,660     writing manifest file '/tmp/pip-pip-egg-info-53vyflm1/gffutils.egg-info/SOURCES.txt'
2022-06-05T17:35:47,796   Source in /tmp/pip-wheel-6ki7qq8y/gffutils_4a2492956dfe439da1dc1d5109cbdbcd has version 0.11.0, which satisfies requirement gffutils==0.11.0 from https://files.pythonhosted.org/packages/eb/38/8f8f917d37175dea194c12d7c625d82e0b039169afe5c08f3609fbef5f9c/gffutils-0.11.0.tar.gz#sha256=4593bdf8bda2501b8e0c54cd3366fdaba04b211c86f43c0029e65869d15ec769
2022-06-05T17:35:47,798   Removed gffutils==0.11.0 from https://files.pythonhosted.org/packages/eb/38/8f8f917d37175dea194c12d7c625d82e0b039169afe5c08f3609fbef5f9c/gffutils-0.11.0.tar.gz#sha256=4593bdf8bda2501b8e0c54cd3366fdaba04b211c86f43c0029e65869d15ec769 from build tracker '/tmp/pip-req-tracker-iqovbkcs'
2022-06-05T17:35:47,806 Created temporary directory: /tmp/pip-unpack-d31jloeb
2022-06-05T17:35:47,807 Building wheels for collected packages: gffutils
2022-06-05T17:35:47,816   Created temporary directory: /tmp/pip-wheel-ryr2g4dm
2022-06-05T17:35:47,817   Building wheel for gffutils (setup.py): started
2022-06-05T17:35:47,818   Destination directory: /tmp/pip-wheel-ryr2g4dm
2022-06-05T17:35:47,818   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6ki7qq8y/gffutils_4a2492956dfe439da1dc1d5109cbdbcd/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6ki7qq8y/gffutils_4a2492956dfe439da1dc1d5109cbdbcd/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ryr2g4dm
2022-06-05T17:35:49,817   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing ' 0.11.0' to '0.11.0'
2022-06-05T17:35:49,818     warnings.warn(tmpl.format(**locals()))
2022-06-05T17:35:49,933   running bdist_wheel
2022-06-05T17:35:49,949   running build
2022-06-05T17:35:49,950   running build_py
2022-06-05T17:35:50,286   creating build
2022-06-05T17:35:50,287   creating build/lib
2022-06-05T17:35:50,288   creating build/lib/gffutils
2022-06-05T17:35:50,291   copying gffutils/interface.py -> build/lib/gffutils
2022-06-05T17:35:50,301   copying gffutils/constants.py -> build/lib/gffutils
2022-06-05T17:35:50,305   copying gffutils/attributes.py -> build/lib/gffutils
2022-06-05T17:35:50,310   copying gffutils/parser.py -> build/lib/gffutils
2022-06-05T17:35:50,316   copying gffutils/create.py -> build/lib/gffutils
2022-06-05T17:35:50,327   copying gffutils/helpers.py -> build/lib/gffutils
2022-06-05T17:35:50,334   copying gffutils/bins.py -> build/lib/gffutils
2022-06-05T17:35:50,341   copying gffutils/biopython_integration.py -> build/lib/gffutils
2022-06-05T17:35:50,346   copying gffutils/__init__.py -> build/lib/gffutils
2022-06-05T17:35:50,351   copying gffutils/pybedtools_integration.py -> build/lib/gffutils
2022-06-05T17:35:50,357   copying gffutils/version.py -> build/lib/gffutils
2022-06-05T17:35:50,361   copying gffutils/merge_criteria.py -> build/lib/gffutils
2022-06-05T17:35:50,366   copying gffutils/inspect.py -> build/lib/gffutils
2022-06-05T17:35:50,370   copying gffutils/iterators.py -> build/lib/gffutils
2022-06-05T17:35:50,375   copying gffutils/gffwriter.py -> build/lib/gffutils
2022-06-05T17:35:50,380   copying gffutils/feature.py -> build/lib/gffutils
2022-06-05T17:35:50,385   copying gffutils/exceptions.py -> build/lib/gffutils
2022-06-05T17:35:50,389   copying gffutils/convert.py -> build/lib/gffutils
2022-06-05T17:35:50,393   package init file 'gffutils/scripts/__init__.py' not found (or not a regular file)
2022-06-05T17:35:50,396   creating build/lib/gffutils/scripts
2022-06-05T17:35:50,399   copying gffutils/scripts/gffutils-flybase-convert.py -> build/lib/gffutils/scripts
2022-06-05T17:35:50,409   creating build/lib/gffutils/test
2022-06-05T17:35:50,411   copying gffutils/test/synth_test_base.py -> build/lib/gffutils/test
2022-06-05T17:35:50,415   copying gffutils/test/test_merge.py -> build/lib/gffutils/test
2022-06-05T17:35:50,420   copying gffutils/test/performance_evaluation.py -> build/lib/gffutils/test
2022-06-05T17:35:50,425   copying gffutils/test/expected.py -> build/lib/gffutils/test
2022-06-05T17:35:50,429   copying gffutils/test/feature_test.py -> build/lib/gffutils/test
2022-06-05T17:35:50,435   copying gffutils/test/attr_test_cases.py -> build/lib/gffutils/test
2022-06-05T17:35:50,441   copying gffutils/test/parser_test.py -> build/lib/gffutils/test
2022-06-05T17:35:50,447   copying gffutils/test/test_iterators.py -> build/lib/gffutils/test
2022-06-05T17:35:50,452   copying gffutils/test/test.py -> build/lib/gffutils/test
2022-06-05T17:35:50,462   copying gffutils/test/__init__.py -> build/lib/gffutils/test
2022-06-05T17:35:50,466   copying gffutils/test/test_biopython_integration.py -> build/lib/gffutils/test
2022-06-05T17:35:50,471   copying gffutils/test/helpers_test.py -> build/lib/gffutils/test
2022-06-05T17:35:50,477   copying gffutils/test/test_issues.py -> build/lib/gffutils/test
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2022-06-05T17:35:50,502   creating build/lib/gffutils/test/data
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2022-06-05T17:35:50,508   copying gffutils/test/data/wormbase_gff2_alt.txt -> build/lib/gffutils/test/data
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2022-06-05T17:35:50,535   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/lib/gffutils/test/data
2022-06-05T17:35:50,548   copying gffutils/test/data/synthetic.gff3 -> build/lib/gffutils/test/data
2022-06-05T17:35:50,554   copying gffutils/test/data/mouse_extra_comma.gff3 -> build/lib/gffutils/test/data
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2022-06-05T17:35:51,428   copying gffutils/test/data/unsanitized.gff -> build/lib/gffutils/test/data
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2022-06-05T17:35:51,443   copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/lib/gffutils/test/data
2022-06-05T17:35:51,460   copying gffutils/test/data/issue167.gff -> build/lib/gffutils/test/data
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2022-06-05T17:35:51,480   copying gffutils/test/data/keep-order-test.gtf -> build/lib/gffutils/test/data
2022-06-05T17:35:51,486   copying gffutils/test/data/random-chr.gff -> build/lib/gffutils/test/data
2022-06-05T17:35:51,493   copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/lib/gffutils/test/data
2022-06-05T17:35:51,501   copying gffutils/test/data/gff_example1.gff3.gz -> build/lib/gffutils/test/data
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2022-06-05T17:35:51,522   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/lib/gffutils/test/data
2022-06-05T17:35:51,529   copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/lib/gffutils/test/data
2022-06-05T17:35:51,546   copying gffutils/test/data/download-large-annotation-files.sh -> build/lib/gffutils/test/data
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2022-06-05T17:35:51,559   copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/lib/gffutils/test/data
2022-06-05T17:35:51,566   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/lib/gffutils/test/data
2022-06-05T17:35:51,582   copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/lib/gffutils/test/data
2022-06-05T17:35:51,588   copying gffutils/test/data/issue181.gff -> build/lib/gffutils/test/data
2022-06-05T17:35:51,595   copying gffutils/test/data/gms2_example.gff3 -> build/lib/gffutils/test/data
2022-06-05T17:35:51,601   copying gffutils/test/data/intro_docs_example.gff -> build/lib/gffutils/test/data
2022-06-05T17:35:51,608   copying gffutils/test/data/sharr.gtf -> build/lib/gffutils/test/data
2022-06-05T17:35:51,628   running build_scripts
2022-06-05T17:35:51,629   creating build/scripts-3.5
2022-06-05T17:35:51,631   copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.5
2022-06-05T17:35:51,636   changing mode of build/scripts-3.5/gffutils-cli from 644 to 755
2022-06-05T17:35:51,643   installing to build/bdist.linux-armv7l/wheel
2022-06-05T17:35:51,644   running install
2022-06-05T17:35:51,646   running install_lib
2022-06-05T17:35:51,654   creating build/bdist.linux-armv7l
2022-06-05T17:35:51,654   creating build/bdist.linux-armv7l/wheel
2022-06-05T17:35:51,659   creating build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:51,662   creating build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,664   copying build/lib/gffutils/test/synth_test_base.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,669   copying build/lib/gffutils/test/test_merge.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,675   copying build/lib/gffutils/test/performance_evaluation.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,682   copying build/lib/gffutils/test/expected.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,688   copying build/lib/gffutils/test/feature_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,694   copying build/lib/gffutils/test/attr_test_cases.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,700   copying build/lib/gffutils/test/parser_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,707   copying build/lib/gffutils/test/test_iterators.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,712   copying build/lib/gffutils/test/test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,722   copying build/lib/gffutils/test/__init__.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,726   copying build/lib/gffutils/test/test_biopython_integration.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,731   copying build/lib/gffutils/test/helpers_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,737   copying build/lib/gffutils/test/test_issues.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,744   copying build/lib/gffutils/test/test_merge_all.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2022-06-05T17:35:51,752   creating build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,755   copying build/lib/gffutils/test/data/keyval_sep_in_attrs.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,762   copying build/lib/gffutils/test/data/wormbase_gff2_alt.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,768   copying build/lib/gffutils/test/data/dm6-chr2L.fa -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,773   copying build/lib/gffutils/test/data/gff_example1.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,777   copying build/lib/gffutils/test/data/gencode-v19.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,782   copying build/lib/gffutils/test/data/issue174.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,787   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,799   copying build/lib/gffutils/test/data/synthetic.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,804   copying build/lib/gffutils/test/data/mouse_extra_comma.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,810   copying build/lib/gffutils/test/data/FBgn0031208.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,816   copying build/lib/gffutils/test/data/ensembl_gtf.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,822   copying build/lib/gffutils/test/data/ncbi_gff3.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,829   copying build/lib/gffutils/test/data/nonascii -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:51,836   copying build/lib/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,674   copying build/lib/gffutils/test/data/unsanitized.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,679   copying build/lib/gffutils/test/data/hybrid1.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,683   copying build/lib/gffutils/test/data/wormbase_gff2.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,688   copying build/lib/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,704   copying build/lib/gffutils/test/data/issue167.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,709   copying build/lib/gffutils/test/data/FBgn0031208.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,715   copying build/lib/gffutils/test/data/glimmer_nokeyval.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,719   copying build/lib/gffutils/test/data/keep-order-test.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,723   copying build/lib/gffutils/test/data/random-chr.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,727   copying build/lib/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,733   copying build/lib/gffutils/test/data/gff_example1.gff3.gz -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,738   copying build/lib/gffutils/test/data/F3-unique-3.v2.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,746   copying build/lib/gffutils/test/data/jgi_gff2.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,751   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,756   copying build/lib/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,770   copying build/lib/gffutils/test/data/download-large-annotation-files.sh -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,774   copying build/lib/gffutils/test/data/gencode.vM8.chromsizes.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,779   copying build/lib/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,784   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,799   copying build/lib/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,802   copying build/lib/gffutils/test/data/issue181.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,806   copying build/lib/gffutils/test/data/gms2_example.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,810   copying build/lib/gffutils/test/data/intro_docs_example.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,814   copying build/lib/gffutils/test/data/sharr.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2022-06-05T17:35:52,820   copying build/lib/gffutils/interface.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,832   copying build/lib/gffutils/constants.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,837   copying build/lib/gffutils/attributes.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,842   creating build/bdist.linux-armv7l/wheel/gffutils/scripts
2022-06-05T17:35:52,844   copying build/lib/gffutils/scripts/gffutils-flybase-convert.py -> build/bdist.linux-armv7l/wheel/gffutils/scripts
2022-06-05T17:35:52,849   copying build/lib/gffutils/parser.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,855   copying build/lib/gffutils/create.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,866   copying build/lib/gffutils/helpers.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,874   copying build/lib/gffutils/bins.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,880   copying build/lib/gffutils/biopython_integration.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,886   copying build/lib/gffutils/__init__.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,891   copying build/lib/gffutils/pybedtools_integration.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,898   copying build/lib/gffutils/version.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,903   copying build/lib/gffutils/merge_criteria.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,909   copying build/lib/gffutils/inspect.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,914   copying build/lib/gffutils/iterators.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,920   copying build/lib/gffutils/gffwriter.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,925   copying build/lib/gffutils/feature.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,931   copying build/lib/gffutils/exceptions.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,934   copying build/lib/gffutils/convert.py -> build/bdist.linux-armv7l/wheel/gffutils
2022-06-05T17:35:52,939   running install_egg_info
2022-06-05T17:35:52,993   running egg_info
2022-06-05T17:35:52,994   writing gffutils.egg-info/PKG-INFO
2022-06-05T17:35:52,999   writing requirements to gffutils.egg-info/requires.txt
2022-06-05T17:35:53,001   writing dependency_links to gffutils.egg-info/dependency_links.txt
2022-06-05T17:35:53,004   writing top-level names to gffutils.egg-info/top_level.txt
2022-06-05T17:35:53,021   reading manifest file 'gffutils.egg-info/SOURCES.txt'
2022-06-05T17:35:53,028   reading manifest template 'MANIFEST.in'
2022-06-05T17:35:53,030   warning: no files found matching '*.rst' under directory 'docs/source'
2022-06-05T17:35:53,031   warning: no files found matching '*.py' under directory 'docs/source'
2022-06-05T17:35:53,032   warning: no files found matching '*' under directory 'docs/source/images'
2022-06-05T17:35:53,034   warning: no files found matching 'docs/Makefile'
2022-06-05T17:35:53,035   warning: no files found matching 'docs/make.bat'
2022-06-05T17:35:53,037   warning: no files found matching 'gffutils/test/data/__init__.py'
2022-06-05T17:35:53,039   warning: no files found matching 'gffutils/test/data/t.py'
2022-06-05T17:35:53,055   writing manifest file 'gffutils.egg-info/SOURCES.txt'
2022-06-05T17:35:53,058   Copying gffutils.egg-info to build/bdist.linux-armv7l/wheel/gffutils-0.11.0-py3.5.egg-info
2022-06-05T17:35:53,083   running install_scripts
2022-06-05T17:35:53,224   creating build/bdist.linux-armv7l/wheel/gffutils-0.11.0.data
2022-06-05T17:35:53,225   creating build/bdist.linux-armv7l/wheel/gffutils-0.11.0.data/scripts
2022-06-05T17:35:53,227   copying build/scripts-3.5/gffutils-cli -> build/bdist.linux-armv7l/wheel/gffutils-0.11.0.data/scripts
2022-06-05T17:35:53,232   changing mode of build/bdist.linux-armv7l/wheel/gffutils-0.11.0.data/scripts/gffutils-cli to 755
2022-06-05T17:35:53,294   creating build/bdist.linux-armv7l/wheel/gffutils-0.11.0.dist-info/WHEEL
2022-06-05T17:35:55,267   Building wheel for gffutils (setup.py): finished with status 'done'
2022-06-05T17:35:55,298   Created wheel for gffutils: filename=gffutils-0.11.0-py3-none-any.whl size=1617675 sha256=17cb6c18791ad6fac6a243fdacad9c551cd32d03d07717e740048b9e3c04d901
2022-06-05T17:35:55,299   Stored in directory: /tmp/pip-ephem-wheel-cache-tc2csayf/wheels/88/b9/f3/12ec25c403c00b7282028c4f54c9422b75e13754bda8ed01bd
2022-06-05T17:35:55,323 Successfully built gffutils
2022-06-05T17:35:55,608 Removed build tracker: '/tmp/pip-req-tracker-iqovbkcs'