2022-06-09T23:59:41,134 Created temporary directory: /tmp/pip-ephem-wheel-cache-lcyckicv 2022-06-09T23:59:41,139 Created temporary directory: /tmp/pip-build-tracker-e7azk2h3 2022-06-09T23:59:41,140 Initialized build tracking at /tmp/pip-build-tracker-e7azk2h3 2022-06-09T23:59:41,140 Created build tracker: /tmp/pip-build-tracker-e7azk2h3 2022-06-09T23:59:41,141 Entered build tracker: /tmp/pip-build-tracker-e7azk2h3 2022-06-09T23:59:41,142 Created temporary directory: /tmp/pip-wheel-kcjza2lg 2022-06-09T23:59:41,212 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-09T23:59:41,221 2 location(s) to search for versions of mikado: 2022-06-09T23:59:41,221 * https://pypi.org/simple/mikado/ 2022-06-09T23:59:41,221 * https://www.piwheels.org/simple/mikado/ 2022-06-09T23:59:41,222 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2022-06-09T23:59:41,223 Getting page https://pypi.org/simple/mikado/ 2022-06-09T23:59:41,226 Found index url https://pypi.org/simple 2022-06-09T23:59:41,356 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2022-06-09T23:59:41,357 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2022-06-09T23:59:41,358 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2022-06-09T23:59:41,359 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0 2022-06-09T23:59:41,359 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1 2022-06-09T23:59:41,360 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2 2022-06-09T23:59:41,361 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1 2022-06-09T23:59:41,361 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2 2022-06-09T23:59:41,362 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/) 2022-06-09T23:59:41,363 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4 2022-06-09T23:59:41,363 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1 2022-06-09T23:59:41,364 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2 2022-06-09T23:59:41,366 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2022-06-09T23:59:41,367 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2022-06-09T23:59:41,368 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2022-06-09T23:59:41,370 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2022-06-09T23:59:41,371 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2022-06-09T23:59:41,372 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2022-06-09T23:59:41,374 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2022-06-09T23:59:41,375 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2022-06-09T23:59:41,377 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2022-06-09T23:59:41,378 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2022-06-09T23:59:41,379 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2022-06-09T23:59:41,380 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2022-06-09T23:59:41,381 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz#sha256=c5dc0a0f703836df15a31f304669865520717061e13b5dd74af384854b03ae7b (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2022-06-09T23:59:41,382 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz#sha256=b8e770b948ef7a834c329831c5a5d2d1742ec1165f7200c2df148e74f2f4789b (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2022-06-09T23:59:41,383 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz#sha256=a6cd21a6ce8758bdb316694d24fadcc6bb004a88f9eb244922e960bc106ed526 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2022-06-09T23:59:41,385 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz#sha256=6d8844bacacc776214cf35cb148fa638c029b2972751d04fc1f7d0d8f3e961c2 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2022-06-09T23:59:41,386 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2022-06-09T23:59:41,386 Getting page https://www.piwheels.org/simple/mikado/ 2022-06-09T23:59:41,388 Found index url https://www.piwheels.org/simple 2022-06-09T23:59:41,688 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,689 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,690 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,690 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,691 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,691 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,692 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,692 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,693 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,693 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,694 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,694 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,695 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,695 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,696 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,696 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,697 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,697 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,698 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,698 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,699 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,699 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2022-06-09T23:59:41,700 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/Mikado-2.0rc1-cp39-cp39-linux_armv7l.whl#sha256=91ac0dfdc5145f7ac98064d92c6cc7a27c9737695bee341d5ccd4dd84778da0a (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,723 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.0rc1-cp39-cp39-linux_armv6l.whl#sha256=91ac0dfdc5145f7ac98064d92c6cc7a27c9737695bee341d5ccd4dd84778da0a (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,724 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv7l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,724 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.0rc1-cp35-cp35m-linux_armv6l.whl#sha256=f0c146400dbcde6c6b2b4691d3519ee99863e2f9a5a53473bb658567431c4e58 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,725 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.0rc1-cp37-cp37m-linux_armv7l.whl#sha256=4c7691d7cd8ce61164a13e3da86b2d4637c36014b90f25216924a8b9f07290cc (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,725 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.0rc1-cp37-cp37m-linux_armv6l.whl#sha256=4c7691d7cd8ce61164a13e3da86b2d4637c36014b90f25216924a8b9f07290cc (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,726 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,726 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,727 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,727 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv7l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,728 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv6l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,728 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp37-cp37m-linux_armv7l.whl#sha256=8a63835167df1009a262783fca90ce25f88aad46ebf235820d7f21cea9e27926 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,729 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv7l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,729 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,730 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,730 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,731 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,731 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,731 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,732 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,732 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,733 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,733 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,734 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,734 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,735 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,735 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,736 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,736 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,737 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,737 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,738 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,738 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,739 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,739 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,740 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,740 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,741 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,741 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,742 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,742 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,743 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2022-06-09T23:59:41,743 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2022-06-09T23:59:41,744 Skipping link: not a file: https://pypi.org/simple/mikado/ 2022-06-09T23:59:41,796 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2022-06-09T23:59:41,838 Collecting mikado==2.3.4 2022-06-09T23:59:41,843 Created temporary directory: /tmp/pip-unpack-_ezulgu_ 2022-06-09T23:59:41,942 Downloading Mikado-2.3.4.tar.gz (24.7 MB) 2022-06-09T23:59:53,192 Added mikado==2.3.4 from https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz#sha256=6d8844bacacc776214cf35cb148fa638c029b2972751d04fc1f7d0d8f3e961c2 to build tracker '/tmp/pip-build-tracker-e7azk2h3' 2022-06-09T23:59:53,208 Created temporary directory: /tmp/pip-build-env-ylha9vft 2022-06-09T23:59:53,229 Created temporary directory: /tmp/pip-standalone-pip-3903y383 2022-06-09T23:59:55,609 Installing build dependencies: started 2022-06-09T23:59:55,611 Running command pip subprocess to install build dependencies 2022-06-10T00:00:18,609 Using pip 22.1 from /tmp/pip-standalone-pip-3903y383/__env_pip__.zip/pip (python 3.9) 2022-06-10T00:00:25,392 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-10T00:00:36,644 Collecting setuptools 2022-06-10T00:00:51,058 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.3.3-py3-none-any.whl (1.2 MB) 2022-06-10T00:01:04,228 Collecting wheel 2022-06-10T00:01:11,570 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-06-10T00:01:21,827 Collecting cython 2022-06-10T00:01:32,643 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.30-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-06-10T00:01:41,575 Collecting numpy 2022-06-10T00:01:46,620 Using cached https://www.piwheels.org/simple/numpy/numpy-1.22.4-cp39-cp39-linux_armv7l.whl (13.0 MB) 2022-06-10T00:01:50,496 Collecting scipy 2022-06-10T00:02:07,011 Using cached https://www.piwheels.org/simple/scipy/SciPy-1.8.1-cp39-cp39-linux_armv7l.whl (72.2 MB) 2022-06-10T00:02:19,446 Installing collected packages: wheel, setuptools, numpy, cython, scipy 2022-06-10T00:02:19,755 Creating /tmp/pip-build-env-ylha9vft/overlay/bin 2022-06-10T00:02:19,766 changing mode of /tmp/pip-build-env-ylha9vft/overlay/bin/wheel to 755 2022-06-10T00:02:45,708 changing mode of /tmp/pip-build-env-ylha9vft/overlay/bin/f2py to 755 2022-06-10T00:02:45,712 changing mode of /tmp/pip-build-env-ylha9vft/overlay/bin/f2py3 to 755 2022-06-10T00:02:45,716 changing mode of /tmp/pip-build-env-ylha9vft/overlay/bin/f2py3.9 to 755 2022-06-10T00:02:52,099 changing mode of /tmp/pip-build-env-ylha9vft/overlay/bin/cygdb to 755 2022-06-10T00:02:52,103 changing mode of /tmp/pip-build-env-ylha9vft/overlay/bin/cython to 755 2022-06-10T00:02:52,108 changing mode of /tmp/pip-build-env-ylha9vft/overlay/bin/cythonize to 755 2022-06-10T00:03:32,697 Successfully installed cython-0.29.30 numpy-1.22.4 scipy-1.8.1 setuptools-62.3.3 wheel-0.37.1 2022-06-10T00:03:32,897 WARNING: There was an error checking the latest version of pip. 2022-06-10T00:03:33,642 Installing build dependencies: finished with status 'done' 2022-06-10T00:03:33,671 Getting requirements to build wheel: started 2022-06-10T00:03:33,673 Running command Getting requirements to build wheel 2022-06-10T00:03:45,740 running egg_info 2022-06-10T00:03:46,334 writing Mikado.egg-info/PKG-INFO 2022-06-10T00:03:46,903 writing dependency_links to Mikado.egg-info/dependency_links.txt 2022-06-10T00:03:48,573 writing entry points to Mikado.egg-info/entry_points.txt 2022-06-10T00:03:49,688 writing requirements to Mikado.egg-info/requires.txt 2022-06-10T00:03:50,245 writing top-level names to Mikado.egg-info/top_level.txt 2022-06-10T00:03:51,634 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2022-06-10T00:03:51,708 reading manifest template 'MANIFEST.in' 2022-06-10T00:03:52,256 warning: no previously-included files found matching 'util/analyse_metrics.py' 2022-06-10T00:03:52,258 warning: no previously-included files found matching 'util/create_model.py' 2022-06-10T00:03:52,260 warning: no previously-included files found matching 'util/self_training.py' 2022-06-10T00:03:52,768 warning: no files found matching '*json' under directory 'Mikado' 2022-06-10T00:03:53,171 warning: no previously-included files matching '*' found under directory 'docs/' 2022-06-10T00:03:53,311 warning: no previously-included files matching '*' found under directory 'tests/__pycache__' 2022-06-10T00:03:53,312 adding license file 'LICENSE.txt' 2022-06-10T00:03:53,312 adding license file 'AUTHORS' 2022-06-10T00:03:53,365 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2022-06-10T00:03:53,744 Getting requirements to build wheel: finished with status 'done' 2022-06-10T00:03:53,767 Created temporary directory: /tmp/pip-modern-metadata-0my_b9s4 2022-06-10T00:03:53,773 Preparing metadata (pyproject.toml): started 2022-06-10T00:03:53,775 Running command Preparing metadata (pyproject.toml) 2022-06-10T00:04:05,350 running dist_info 2022-06-10T00:04:05,975 creating /tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info 2022-06-10T00:04:06,569 writing /tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info/PKG-INFO 2022-06-10T00:04:07,134 writing dependency_links to /tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info/dependency_links.txt 2022-06-10T00:04:08,816 writing entry points to /tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info/entry_points.txt 2022-06-10T00:04:09,940 writing requirements to /tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info/requires.txt 2022-06-10T00:04:10,502 writing top-level names to /tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info/top_level.txt 2022-06-10T00:04:10,506 writing manifest file '/tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info/SOURCES.txt' 2022-06-10T00:04:11,900 reading manifest file '/tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info/SOURCES.txt' 2022-06-10T00:04:11,904 reading manifest template 'MANIFEST.in' 2022-06-10T00:04:12,456 warning: no previously-included files found matching 'util/analyse_metrics.py' 2022-06-10T00:04:12,458 warning: no previously-included files found matching 'util/create_model.py' 2022-06-10T00:04:12,460 warning: no previously-included files found matching 'util/self_training.py' 2022-06-10T00:04:12,992 warning: no files found matching '*json' under directory 'Mikado' 2022-06-10T00:04:13,405 warning: no previously-included files matching '*' found under directory 'docs/' 2022-06-10T00:04:13,548 warning: no previously-included files matching '*' found under directory 'tests/__pycache__' 2022-06-10T00:04:13,549 adding license file 'LICENSE.txt' 2022-06-10T00:04:13,550 adding license file 'AUTHORS' 2022-06-10T00:04:13,590 writing manifest file '/tmp/pip-modern-metadata-0my_b9s4/Mikado.egg-info/SOURCES.txt' 2022-06-10T00:04:13,595 creating '/tmp/pip-modern-metadata-0my_b9s4/Mikado-2.3.4.dist-info' 2022-06-10T00:04:13,865 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-06-10T00:04:13,867 adding license file "AUTHORS" (matched pattern "AUTHORS*") 2022-06-10T00:04:14,268 Preparing metadata (pyproject.toml): finished with status 'done' 2022-06-10T00:04:14,283 Source in /tmp/pip-wheel-kcjza2lg/mikado_73b5db649441476a81742a3e88da381c has version 2.3.4, which satisfies requirement mikado==2.3.4 from https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz#sha256=6d8844bacacc776214cf35cb148fa638c029b2972751d04fc1f7d0d8f3e961c2 2022-06-10T00:04:14,285 Removed mikado==2.3.4 from https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz#sha256=6d8844bacacc776214cf35cb148fa638c029b2972751d04fc1f7d0d8f3e961c2 from build tracker '/tmp/pip-build-tracker-e7azk2h3' 2022-06-10T00:04:14,299 Created temporary directory: /tmp/pip-unpack-u_wxwwkn 2022-06-10T00:04:14,300 Building wheels for collected packages: mikado 2022-06-10T00:04:14,310 Created temporary directory: /tmp/pip-wheel-i3twk9z0 2022-06-10T00:04:14,311 Destination directory: /tmp/pip-wheel-i3twk9z0 2022-06-10T00:04:14,316 Building wheel for mikado (pyproject.toml): started 2022-06-10T00:04:14,318 Running command Building wheel for mikado (pyproject.toml) 2022-06-10T00:04:25,873 running bdist_wheel 2022-06-10T00:04:26,573 running build 2022-06-10T00:04:26,573 running build_py 2022-06-10T00:04:27,182 creating build 2022-06-10T00:04:27,182 creating build/lib.linux-armv7l-cpython-39 2022-06-10T00:04:27,184 creating build/lib.linux-armv7l-cpython-39/Mikado 2022-06-10T00:04:27,186 copying Mikado/version.py -> build/lib.linux-armv7l-cpython-39/Mikado 2022-06-10T00:04:27,190 copying Mikado/__main__.py -> build/lib.linux-armv7l-cpython-39/Mikado 2022-06-10T00:04:27,193 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-39/Mikado 2022-06-10T00:04:27,196 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado 2022-06-10T00:04:27,201 creating build/lib.linux-armv7l-cpython-39/Mikado/daijin 2022-06-10T00:04:27,203 copying Mikado/daijin/assemble.py -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2022-06-10T00:04:27,207 copying Mikado/daijin/__main__.py -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2022-06-10T00:04:27,211 copying Mikado/daijin/mikado.py -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2022-06-10T00:04:27,215 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2022-06-10T00:04:27,221 creating build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2022-06-10T00:04:27,223 copying Mikado/transcripts/pad.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2022-06-10T00:04:27,228 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2022-06-10T00:04:27,232 copying Mikado/transcripts/transcriptcomputer.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2022-06-10T00:04:27,235 copying Mikado/transcripts/reference_gene.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2022-06-10T00:04:27,240 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2022-06-10T00:04:27,243 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts 2022-06-10T00:04:27,249 creating build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:27,251 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:27,255 copying Mikado/utilities/namespace.py -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:27,258 copying Mikado/utilities/file_type.py -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:27,261 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:27,265 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:27,271 creating build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,272 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,277 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,282 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,287 copying Mikado/subprograms/_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,291 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,295 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,298 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,303 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms 2022-06-10T00:04:27,307 creating build/lib.linux-armv7l-cpython-39/Mikado/serializers 2022-06-10T00:04:27,309 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers 2022-06-10T00:04:27,313 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers 2022-06-10T00:04:27,318 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers 2022-06-10T00:04:27,322 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers 2022-06-10T00:04:27,327 creating build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,328 copying Mikado/parsers/bam_parser.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,332 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,339 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,343 copying Mikado/parsers/parser.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,347 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,351 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,355 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,359 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/parsers 2022-06-10T00:04:27,364 creating build/lib.linux-armv7l-cpython-39/Mikado/_transcripts 2022-06-10T00:04:27,365 copying Mikado/_transcripts/transcript_base.py -> build/lib.linux-armv7l-cpython-39/Mikado/_transcripts 2022-06-10T00:04:27,379 copying Mikado/_transcripts/scoring_configuration.py -> build/lib.linux-armv7l-cpython-39/Mikado/_transcripts 2022-06-10T00:04:27,383 copying Mikado/_transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-39/Mikado/_transcripts 2022-06-10T00:04:27,386 copying Mikado/_transcripts/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/_transcripts 2022-06-10T00:04:27,391 creating build/lib.linux-armv7l-cpython-39/Mikado/preparation 2022-06-10T00:04:27,392 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-39/Mikado/preparation 2022-06-10T00:04:27,398 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-39/Mikado/preparation 2022-06-10T00:04:27,404 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-39/Mikado/preparation 2022-06-10T00:04:27,408 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/preparation 2022-06-10T00:04:27,413 creating build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:27,414 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:27,421 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:27,426 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:27,430 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:27,435 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:27,438 copying Mikado/scales/calculator.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:27,446 creating build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,448 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,451 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,456 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,459 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,464 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,476 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,479 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,488 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-39/Mikado/loci 2022-06-10T00:04:27,497 creating build/lib.linux-armv7l-cpython-39/Mikado/picking 2022-06-10T00:04:27,499 copying Mikado/picking/_merge_loci_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2022-06-10T00:04:27,503 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2022-06-10T00:04:27,508 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2022-06-10T00:04:27,516 copying Mikado/picking/_locus_line_creator.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2022-06-10T00:04:27,520 copying Mikado/picking/_loci_serialiser.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2022-06-10T00:04:27,523 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2022-06-10T00:04:27,526 copying Mikado/picking/_locus_single_printer.py -> build/lib.linux-armv7l-cpython-39/Mikado/picking 2022-06-10T00:04:27,534 creating build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,535 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,541 copying Mikado/tests/test_blast_inputs.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,544 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,548 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,562 copying Mikado/tests/test_compare.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,566 copying Mikado/tests/test_transcript_positive.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,573 copying Mikado/tests/test_bed12.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,578 copying Mikado/tests/parser_test.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,583 copying Mikado/tests/test_light.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,587 copying Mikado/tests/test_transcript_negative.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,592 copying Mikado/tests/intervaltree_test.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,597 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,600 copying Mikado/tests/locus_test.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,618 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,626 copying Mikado/tests/test_serialise_external.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,629 copying Mikado/tests/assigner_test.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,636 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,639 copying Mikado/tests/prepare_misc_test.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,643 copying Mikado/tests/test_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,647 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,650 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,655 copying Mikado/tests/test_transcript_single.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,661 copying Mikado/tests/test_configurators.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,665 copying Mikado/tests/orf_test.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,671 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,676 copying Mikado/tests/test_serialise_junctions.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,680 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,684 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,688 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,693 copying Mikado/tests/test_external_async.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,697 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,700 copying Mikado/tests/utilities_test.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,705 copying Mikado/tests/test_scores.py -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:27,711 creating build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,713 copying Mikado/configuration/picking_config.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,718 copying Mikado/configuration/serialise_config.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,721 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,726 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,730 copying Mikado/configuration/prepare_config.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,734 copying Mikado/configuration/daijin_configuration.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,738 copying Mikado/configuration/configuration.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,742 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/configuration 2022-06-10T00:04:27,748 creating build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2022-06-10T00:04:27,749 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2022-06-10T00:04:27,755 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2022-06-10T00:04:27,761 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods 2022-06-10T00:04:27,766 creating build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,767 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,771 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,775 copying Mikado/subprograms/util/collapse_compare_stats.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,779 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,783 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,786 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,789 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,794 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,797 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util 2022-06-10T00:04:27,803 creating build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,805 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,810 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,813 copying Mikado/serializers/blast_serializer/blast_serialiser.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,818 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,821 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,825 copying Mikado/serializers/blast_serializer/tabular_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,830 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,833 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,838 copying Mikado/serializers/blast_serializer/tab_serialiser.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,841 copying Mikado/serializers/blast_serializer/xml_utils.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,844 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:27,848 creating build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/transcript_methods 2022-06-10T00:04:27,850 copying Mikado/_transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/transcript_methods 2022-06-10T00:04:27,856 copying Mikado/_transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/transcript_methods 2022-06-10T00:04:27,861 copying Mikado/_transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/transcript_methods 2022-06-10T00:04:27,866 creating build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers 2022-06-10T00:04:27,867 copying Mikado/scales/prediction_parsers/parse_gtf_prediction.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers 2022-06-10T00:04:27,871 copying Mikado/scales/prediction_parsers/parse_gff3_prediction.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers 2022-06-10T00:04:27,874 copying Mikado/scales/prediction_parsers/transmission.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers 2022-06-10T00:04:27,877 copying Mikado/scales/prediction_parsers/parse_bed12.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers 2022-06-10T00:04:27,880 copying Mikado/scales/prediction_parsers/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers 2022-06-10T00:04:27,883 copying Mikado/scales/prediction_parsers/parse_bam_prediction.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers 2022-06-10T00:04:27,888 creating build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation 2022-06-10T00:04:27,890 copying Mikado/scales/reference_preparation/gene_dict.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation 2022-06-10T00:04:27,893 copying Mikado/scales/reference_preparation/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation 2022-06-10T00:04:27,896 copying Mikado/scales/reference_preparation/indexing.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation 2022-06-10T00:04:27,900 copying Mikado/scales/reference_preparation/prepare_reference.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation 2022-06-10T00:04:27,905 creating build/lib.linux-armv7l-cpython-39/Mikado/scales/assignment 2022-06-10T00:04:27,907 copying Mikado/scales/assignment/assigner.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/assignment 2022-06-10T00:04:27,913 copying Mikado/scales/assignment/distributed.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/assignment 2022-06-10T00:04:27,916 copying Mikado/scales/assignment/__init__.py -> build/lib.linux-armv7l-cpython-39/Mikado/scales/assignment 2022-06-10T00:04:27,919 running egg_info 2022-06-10T00:04:29,156 writing Mikado.egg-info/PKG-INFO 2022-06-10T00:04:29,729 writing dependency_links to Mikado.egg-info/dependency_links.txt 2022-06-10T00:04:31,459 writing entry points to Mikado.egg-info/entry_points.txt 2022-06-10T00:04:32,605 writing requirements to Mikado.egg-info/requires.txt 2022-06-10T00:04:33,172 writing top-level names to Mikado.egg-info/top_level.txt 2022-06-10T00:04:33,251 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2022-06-10T00:04:33,290 reading manifest template 'MANIFEST.in' 2022-06-10T00:04:33,826 warning: no previously-included files found matching 'util/analyse_metrics.py' 2022-06-10T00:04:33,828 warning: no previously-included files found matching 'util/create_model.py' 2022-06-10T00:04:33,830 warning: no previously-included files found matching 'util/self_training.py' 2022-06-10T00:04:34,344 warning: no files found matching '*json' under directory 'Mikado' 2022-06-10T00:04:34,749 warning: no previously-included files matching '*' found under directory 'docs/' 2022-06-10T00:04:34,901 warning: no previously-included files matching '*' found under directory 'tests/__pycache__' 2022-06-10T00:04:34,902 adding license file 'LICENSE.txt' 2022-06-10T00:04:34,902 adding license file 'AUTHORS' 2022-06-10T00:04:34,954 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2022-06-10T00:04:34,961 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:34,962 ############################ 2022-06-10T00:04:34,962 # Package would be ignored # 2022-06-10T00:04:34,962 ############################ 2022-06-10T00:04:34,963 Python recognizes 'Mikado.configuration.scoring_files' as an importable package, however it is 2022-06-10T00:04:34,963 included in the distribution as "data". 2022-06-10T00:04:34,963 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:34,963 therefore is considered deprecated). 2022-06-10T00:04:34,964 Please make sure that 'Mikado.configuration.scoring_files' is included as a package by using 2022-06-10T00:04:34,964 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:34,965 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:34,965 documentation page. 2022-06-10T00:04:34,966 !! 2022-06-10T00:04:34,967 check.warn(importable) 2022-06-10T00:04:34,967 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:34,968 ############################ 2022-06-10T00:04:34,968 # Package would be ignored # 2022-06-10T00:04:34,968 ############################ 2022-06-10T00:04:34,969 Python recognizes 'Mikado.configuration.scoring_files.HISTORIC' as an importable package, however it is 2022-06-10T00:04:34,969 included in the distribution as "data". 2022-06-10T00:04:34,969 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:34,970 therefore is considered deprecated). 2022-06-10T00:04:34,970 Please make sure that 'Mikado.configuration.scoring_files.HISTORIC' is included as a package by using 2022-06-10T00:04:34,970 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:34,971 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:34,971 documentation page. 2022-06-10T00:04:34,972 !! 2022-06-10T00:04:34,973 check.warn(importable) 2022-06-10T00:04:34,973 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:34,974 ############################ 2022-06-10T00:04:34,974 # Package would be ignored # 2022-06-10T00:04:34,974 ############################ 2022-06-10T00:04:34,975 Python recognizes 'Mikado.daijin.envs' as an importable package, however it is 2022-06-10T00:04:34,975 included in the distribution as "data". 2022-06-10T00:04:34,975 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:34,976 therefore is considered deprecated). 2022-06-10T00:04:34,976 Please make sure that 'Mikado.daijin.envs' is included as a package by using 2022-06-10T00:04:34,976 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:34,977 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:34,977 documentation page. 2022-06-10T00:04:34,978 !! 2022-06-10T00:04:34,979 check.warn(importable) 2022-06-10T00:04:34,979 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:34,980 ############################ 2022-06-10T00:04:34,980 # Package would be ignored # 2022-06-10T00:04:34,981 ############################ 2022-06-10T00:04:34,981 Python recognizes 'Mikado.tests.blast_data' as an importable package, however it is 2022-06-10T00:04:34,981 included in the distribution as "data". 2022-06-10T00:04:34,981 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:34,982 therefore is considered deprecated). 2022-06-10T00:04:34,982 Please make sure that 'Mikado.tests.blast_data' is included as a package by using 2022-06-10T00:04:34,982 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:34,983 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:34,983 documentation page. 2022-06-10T00:04:34,984 !! 2022-06-10T00:04:34,985 check.warn(importable) 2022-06-10T00:04:34,985 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:34,986 ############################ 2022-06-10T00:04:34,986 # Package would be ignored # 2022-06-10T00:04:34,987 ############################ 2022-06-10T00:04:34,987 Python recognizes 'Mikado.tests.blast_input_tests' as an importable package, however it is 2022-06-10T00:04:34,987 included in the distribution as "data". 2022-06-10T00:04:34,987 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:34,988 therefore is considered deprecated). 2022-06-10T00:04:34,988 Please make sure that 'Mikado.tests.blast_input_tests' is included as a package by using 2022-06-10T00:04:34,989 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:34,989 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:34,989 documentation page. 2022-06-10T00:04:34,990 !! 2022-06-10T00:04:34,991 check.warn(importable) 2022-06-10T00:04:34,991 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:34,992 ############################ 2022-06-10T00:04:34,992 # Package would be ignored # 2022-06-10T00:04:34,992 ############################ 2022-06-10T00:04:34,993 Python recognizes 'Mikado.tests.blast_input_tests.sanitised' as an importable package, however it is 2022-06-10T00:04:34,993 included in the distribution as "data". 2022-06-10T00:04:34,993 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:34,993 therefore is considered deprecated). 2022-06-10T00:04:34,994 Please make sure that 'Mikado.tests.blast_input_tests.sanitised' is included as a package by using 2022-06-10T00:04:34,994 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:34,995 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:34,995 documentation page. 2022-06-10T00:04:34,996 !! 2022-06-10T00:04:34,997 check.warn(importable) 2022-06-10T00:04:34,997 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:34,998 ############################ 2022-06-10T00:04:34,998 # Package would be ignored # 2022-06-10T00:04:34,998 ############################ 2022-06-10T00:04:34,999 Python recognizes 'Mikado.tests.blast_input_tests.sanitised.blast.tsv' as an importable package, however it is 2022-06-10T00:04:34,999 included in the distribution as "data". 2022-06-10T00:04:34,999 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:34,999 therefore is considered deprecated). 2022-06-10T00:04:35,000 Please make sure that 'Mikado.tests.blast_input_tests.sanitised.blast.tsv' is included as a package by using 2022-06-10T00:04:35,000 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,001 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,001 documentation page. 2022-06-10T00:04:35,002 !! 2022-06-10T00:04:35,002 check.warn(importable) 2022-06-10T00:04:35,003 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,003 ############################ 2022-06-10T00:04:35,004 # Package would be ignored # 2022-06-10T00:04:35,004 ############################ 2022-06-10T00:04:35,004 Python recognizes 'Mikado.tests.blast_input_tests.sanitised.blast.xml' as an importable package, however it is 2022-06-10T00:04:35,005 included in the distribution as "data". 2022-06-10T00:04:35,005 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,005 therefore is considered deprecated). 2022-06-10T00:04:35,006 Please make sure that 'Mikado.tests.blast_input_tests.sanitised.blast.xml' is included as a package by using 2022-06-10T00:04:35,006 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,007 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,007 documentation page. 2022-06-10T00:04:35,008 !! 2022-06-10T00:04:35,008 check.warn(importable) 2022-06-10T00:04:35,008 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,009 ############################ 2022-06-10T00:04:35,009 # Package would be ignored # 2022-06-10T00:04:35,010 ############################ 2022-06-10T00:04:35,010 Python recognizes 'Mikado.tests.blast_input_tests.sanitised.blast_parse_seqids.tsv' as an importable package, however it is 2022-06-10T00:04:35,010 included in the distribution as "data". 2022-06-10T00:04:35,011 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,011 therefore is considered deprecated). 2022-06-10T00:04:35,011 Please make sure that 'Mikado.tests.blast_input_tests.sanitised.blast_parse_seqids.tsv' is included as a package by using 2022-06-10T00:04:35,012 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,012 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,013 documentation page. 2022-06-10T00:04:35,013 !! 2022-06-10T00:04:35,014 check.warn(importable) 2022-06-10T00:04:35,014 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,015 ############################ 2022-06-10T00:04:35,015 # Package would be ignored # 2022-06-10T00:04:35,016 ############################ 2022-06-10T00:04:35,016 Python recognizes 'Mikado.tests.blast_input_tests.sanitised.blast_parse_seqids.xml' as an importable package, however it is 2022-06-10T00:04:35,016 included in the distribution as "data". 2022-06-10T00:04:35,017 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,017 therefore is considered deprecated). 2022-06-10T00:04:35,017 Please make sure that 'Mikado.tests.blast_input_tests.sanitised.blast_parse_seqids.xml' is included as a package by using 2022-06-10T00:04:35,018 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,018 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,018 documentation page. 2022-06-10T00:04:35,019 !! 2022-06-10T00:04:35,020 check.warn(importable) 2022-06-10T00:04:35,020 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,021 ############################ 2022-06-10T00:04:35,021 # Package would be ignored # 2022-06-10T00:04:35,022 ############################ 2022-06-10T00:04:35,022 Python recognizes 'Mikado.tests.blast_input_tests.sanitised.diamond.daa' as an importable package, however it is 2022-06-10T00:04:35,022 included in the distribution as "data". 2022-06-10T00:04:35,023 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,023 therefore is considered deprecated). 2022-06-10T00:04:35,024 Please make sure that 'Mikado.tests.blast_input_tests.sanitised.diamond.daa' is included as a package by using 2022-06-10T00:04:35,024 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,025 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,025 documentation page. 2022-06-10T00:04:35,026 !! 2022-06-10T00:04:35,026 check.warn(importable) 2022-06-10T00:04:35,027 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,028 ############################ 2022-06-10T00:04:35,028 # Package would be ignored # 2022-06-10T00:04:35,028 ############################ 2022-06-10T00:04:35,028 Python recognizes 'Mikado.tests.blast_input_tests.sanitised.diamond.tsv' as an importable package, however it is 2022-06-10T00:04:35,029 included in the distribution as "data". 2022-06-10T00:04:35,029 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,029 therefore is considered deprecated). 2022-06-10T00:04:35,030 Please make sure that 'Mikado.tests.blast_input_tests.sanitised.diamond.tsv' is included as a package by using 2022-06-10T00:04:35,030 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,031 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,031 documentation page. 2022-06-10T00:04:35,032 !! 2022-06-10T00:04:35,033 check.warn(importable) 2022-06-10T00:04:35,033 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,034 ############################ 2022-06-10T00:04:35,034 # Package would be ignored # 2022-06-10T00:04:35,034 ############################ 2022-06-10T00:04:35,035 Python recognizes 'Mikado.tests.blast_input_tests.sanitised.diamond.xml' as an importable package, however it is 2022-06-10T00:04:35,035 included in the distribution as "data". 2022-06-10T00:04:35,035 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,036 therefore is considered deprecated). 2022-06-10T00:04:35,036 Please make sure that 'Mikado.tests.blast_input_tests.sanitised.diamond.xml' is included as a package by using 2022-06-10T00:04:35,037 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,037 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,038 documentation page. 2022-06-10T00:04:35,038 !! 2022-06-10T00:04:35,039 check.warn(importable) 2022-06-10T00:04:35,039 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,040 ############################ 2022-06-10T00:04:35,041 # Package would be ignored # 2022-06-10T00:04:35,041 ############################ 2022-06-10T00:04:35,041 Python recognizes 'Mikado.tests.blast_input_tests.uniprot' as an importable package, however it is 2022-06-10T00:04:35,042 included in the distribution as "data". 2022-06-10T00:04:35,042 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,042 therefore is considered deprecated). 2022-06-10T00:04:35,043 Please make sure that 'Mikado.tests.blast_input_tests.uniprot' is included as a package by using 2022-06-10T00:04:35,043 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,044 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,044 documentation page. 2022-06-10T00:04:35,045 !! 2022-06-10T00:04:35,046 check.warn(importable) 2022-06-10T00:04:35,046 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,047 ############################ 2022-06-10T00:04:35,047 # Package would be ignored # 2022-06-10T00:04:35,047 ############################ 2022-06-10T00:04:35,048 Python recognizes 'Mikado.tests.blast_input_tests.uniprot.blast.tsv' as an importable package, however it is 2022-06-10T00:04:35,048 included in the distribution as "data". 2022-06-10T00:04:35,048 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,049 therefore is considered deprecated). 2022-06-10T00:04:35,049 Please make sure that 'Mikado.tests.blast_input_tests.uniprot.blast.tsv' is included as a package by using 2022-06-10T00:04:35,050 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,050 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,050 documentation page. 2022-06-10T00:04:35,051 !! 2022-06-10T00:04:35,052 check.warn(importable) 2022-06-10T00:04:35,052 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,053 ############################ 2022-06-10T00:04:35,053 # Package would be ignored # 2022-06-10T00:04:35,054 ############################ 2022-06-10T00:04:35,054 Python recognizes 'Mikado.tests.blast_input_tests.uniprot.blast.xml' as an importable package, however it is 2022-06-10T00:04:35,054 included in the distribution as "data". 2022-06-10T00:04:35,055 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,055 therefore is considered deprecated). 2022-06-10T00:04:35,056 Please make sure that 'Mikado.tests.blast_input_tests.uniprot.blast.xml' is included as a package by using 2022-06-10T00:04:35,056 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,057 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,057 documentation page. 2022-06-10T00:04:35,058 !! 2022-06-10T00:04:35,058 check.warn(importable) 2022-06-10T00:04:35,059 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,059 ############################ 2022-06-10T00:04:35,060 # Package would be ignored # 2022-06-10T00:04:35,060 ############################ 2022-06-10T00:04:35,060 Python recognizes 'Mikado.tests.blast_input_tests.uniprot.blast_parse_seqids.tsv' as an importable package, however it is 2022-06-10T00:04:35,061 included in the distribution as "data". 2022-06-10T00:04:35,061 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,061 therefore is considered deprecated). 2022-06-10T00:04:35,062 Please make sure that 'Mikado.tests.blast_input_tests.uniprot.blast_parse_seqids.tsv' is included as a package by using 2022-06-10T00:04:35,062 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,063 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,063 documentation page. 2022-06-10T00:04:35,064 !! 2022-06-10T00:04:35,065 check.warn(importable) 2022-06-10T00:04:35,065 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,066 ############################ 2022-06-10T00:04:35,066 # Package would be ignored # 2022-06-10T00:04:35,066 ############################ 2022-06-10T00:04:35,067 Python recognizes 'Mikado.tests.blast_input_tests.uniprot.blast_parse_seqids.xml' as an importable package, however it is 2022-06-10T00:04:35,067 included in the distribution as "data". 2022-06-10T00:04:35,067 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,068 therefore is considered deprecated). 2022-06-10T00:04:35,068 Please make sure that 'Mikado.tests.blast_input_tests.uniprot.blast_parse_seqids.xml' is included as a package by using 2022-06-10T00:04:35,069 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,069 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,069 documentation page. 2022-06-10T00:04:35,070 !! 2022-06-10T00:04:35,071 check.warn(importable) 2022-06-10T00:04:35,071 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,072 ############################ 2022-06-10T00:04:35,072 # Package would be ignored # 2022-06-10T00:04:35,073 ############################ 2022-06-10T00:04:35,073 Python recognizes 'Mikado.tests.blast_input_tests.uniprot.diamond.daa' as an importable package, however it is 2022-06-10T00:04:35,073 included in the distribution as "data". 2022-06-10T00:04:35,074 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,074 therefore is considered deprecated). 2022-06-10T00:04:35,075 Please make sure that 'Mikado.tests.blast_input_tests.uniprot.diamond.daa' is included as a package by using 2022-06-10T00:04:35,075 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,075 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,076 documentation page. 2022-06-10T00:04:35,077 !! 2022-06-10T00:04:35,077 check.warn(importable) 2022-06-10T00:04:35,078 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,078 ############################ 2022-06-10T00:04:35,079 # Package would be ignored # 2022-06-10T00:04:35,079 ############################ 2022-06-10T00:04:35,079 Python recognizes 'Mikado.tests.blast_input_tests.uniprot.diamond.tsv' as an importable package, however it is 2022-06-10T00:04:35,080 included in the distribution as "data". 2022-06-10T00:04:35,080 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,080 therefore is considered deprecated). 2022-06-10T00:04:35,081 Please make sure that 'Mikado.tests.blast_input_tests.uniprot.diamond.tsv' is included as a package by using 2022-06-10T00:04:35,081 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,082 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,082 documentation page. 2022-06-10T00:04:35,083 !! 2022-06-10T00:04:35,083 check.warn(importable) 2022-06-10T00:04:35,084 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,085 ############################ 2022-06-10T00:04:35,085 # Package would be ignored # 2022-06-10T00:04:35,085 ############################ 2022-06-10T00:04:35,086 Python recognizes 'Mikado.tests.blast_input_tests.uniprot.diamond.xml' as an importable package, however it is 2022-06-10T00:04:35,086 included in the distribution as "data". 2022-06-10T00:04:35,086 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,087 therefore is considered deprecated). 2022-06-10T00:04:35,087 Please make sure that 'Mikado.tests.blast_input_tests.uniprot.diamond.xml' is included as a package by using 2022-06-10T00:04:35,087 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,088 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,088 documentation page. 2022-06-10T00:04:35,089 !! 2022-06-10T00:04:35,090 check.warn(importable) 2022-06-10T00:04:35,090 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,091 ############################ 2022-06-10T00:04:35,091 # Package would be ignored # 2022-06-10T00:04:35,092 ############################ 2022-06-10T00:04:35,092 Python recognizes 'Mikado.tests.fusion_test' as an importable package, however it is 2022-06-10T00:04:35,092 included in the distribution as "data". 2022-06-10T00:04:35,093 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,093 therefore is considered deprecated). 2022-06-10T00:04:35,093 Please make sure that 'Mikado.tests.fusion_test' is included as a package by using 2022-06-10T00:04:35,094 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,094 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,095 documentation page. 2022-06-10T00:04:35,096 !! 2022-06-10T00:04:35,096 check.warn(importable) 2022-06-10T00:04:35,096 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,097 ############################ 2022-06-10T00:04:35,098 # Package would be ignored # 2022-06-10T00:04:35,098 ############################ 2022-06-10T00:04:35,098 Python recognizes 'Mikado.tests.test_external' as an importable package, however it is 2022-06-10T00:04:35,099 included in the distribution as "data". 2022-06-10T00:04:35,099 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,099 therefore is considered deprecated). 2022-06-10T00:04:35,100 Please make sure that 'Mikado.tests.test_external' is included as a package by using 2022-06-10T00:04:35,100 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,101 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,101 documentation page. 2022-06-10T00:04:35,102 !! 2022-06-10T00:04:35,102 check.warn(importable) 2022-06-10T00:04:35,103 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T00:04:35,104 ############################ 2022-06-10T00:04:35,104 # Package would be ignored # 2022-06-10T00:04:35,104 ############################ 2022-06-10T00:04:35,105 Python recognizes 'Mikado.tests.test_external_aphid' as an importable package, however it is 2022-06-10T00:04:35,105 included in the distribution as "data". 2022-06-10T00:04:35,105 This behavior is likely to change in future versions of setuptools (and 2022-06-10T00:04:35,106 therefore is considered deprecated). 2022-06-10T00:04:35,106 Please make sure that 'Mikado.tests.test_external_aphid' is included as a package by using 2022-06-10T00:04:35,107 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T00:04:35,107 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T00:04:35,108 documentation page. 2022-06-10T00:04:35,108 !! 2022-06-10T00:04:35,109 check.warn(importable) 2022-06-10T00:04:35,109 copying Mikado/daijin/assemble.smk -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2022-06-10T00:04:35,110 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2022-06-10T00:04:35,110 copying Mikado/daijin/mikado.smk -> build/lib.linux-armv7l-cpython-39/Mikado/daijin 2022-06-10T00:04:35,110 creating build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,111 copying Mikado/daijin/envs/blast.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,111 copying Mikado/daijin/envs/cufflinks.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,111 copying Mikado/daijin/envs/diamond.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,111 copying Mikado/daijin/envs/gmap.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,112 copying Mikado/daijin/envs/gnuplot.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,112 copying Mikado/daijin/envs/hisat2.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,112 copying Mikado/daijin/envs/portcullis.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,113 copying Mikado/daijin/envs/prodigal.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,113 copying Mikado/daijin/envs/samtools.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,113 copying Mikado/daijin/envs/scallop.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,114 copying Mikado/daijin/envs/star.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,114 copying Mikado/daijin/envs/stringtie.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,114 copying Mikado/daijin/envs/tophat2.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,115 copying Mikado/daijin/envs/transdecoder.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,115 copying Mikado/daijin/envs/trinity.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs 2022-06-10T00:04:35,115 copying Mikado/utilities/f1.c -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,117 copying Mikado/utilities/f1.pxd -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,121 copying Mikado/utilities/f1.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,124 copying Mikado/utilities/intervaltree.cpp -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,173 copying Mikado/utilities/intervaltree.pxd -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,176 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,182 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,195 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,198 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:35,201 copying Mikado/scales/contrast.cpp -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:35,231 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:35,235 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:35,240 copying Mikado/tests/Chrysemys_picta_bellii_problematic.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,244 copying Mikado/tests/Chrysemys_picta_bellii_problematic.list.txt -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,247 copying Mikado/tests/Chrysemys_picta_bellii_problematic.txt -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,251 copying Mikado/tests/ERR588038.R1.fq.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,277 copying Mikado/tests/ERR588038.R2.fq.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,309 copying Mikado/tests/NC_037283.1.fa.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,362 copying Mikado/tests/SRR5037293.pacbio.fastq.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,366 copying Mikado/tests/annotation.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,370 copying Mikado/tests/annotation.gff3.stats -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,374 copying Mikado/tests/cds_test_1.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,378 copying Mikado/tests/cds_test_2.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,382 copying Mikado/tests/check_seed.fa -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,387 copying Mikado/tests/check_seed.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,392 copying Mikado/tests/check_seed.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,396 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,739 copying Mikado/tests/chr5.fas.gz.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,743 copying Mikado/tests/chr5.fas.gz.gzi -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,747 copying Mikado/tests/chunk-001-proteins.xml.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,755 copying Mikado/tests/complete_padding.bed12 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,759 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,763 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,770 copying Mikado/tests/cufflinks.no_transcript.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,775 copying Mikado/tests/external.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,778 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,782 copying Mikado/tests/gtf_check.gtf.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,787 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,793 copying Mikado/tests/junctions_duplicates.bed -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,797 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:35,810 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,481 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,622 copying Mikado/tests/mikado_prepared.fasta -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,633 copying Mikado/tests/mikado_prepared.fasta.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,637 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,646 copying Mikado/tests/neg_pad.bed12 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,650 copying Mikado/tests/neg_pad.fa -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,657 copying Mikado/tests/neg_pad.fa.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,660 copying Mikado/tests/pacbio.bam -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,664 copying Mikado/tests/pad_three_neg.bed12 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,668 copying Mikado/tests/pad_utr.bed12 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,671 copying Mikado/tests/padding_test.bed12 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,675 copying Mikado/tests/padding_test.fa -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,683 copying Mikado/tests/padding_test.fa.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,687 copying Mikado/tests/padding_test.rev_compl.bed12 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,691 copying Mikado/tests/padding_test.rev_compl.fa -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,698 copying Mikado/tests/padding_test.rev_compl.fa.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,702 copying Mikado/tests/phasing_padding.bed12 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,706 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,710 copying Mikado/tests/reference.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,715 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,719 copying Mikado/tests/test.reads.bam -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,725 copying Mikado/tests/test_mRNA.bam -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,736 copying Mikado/tests/test_mRNA.bam.bai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,740 copying Mikado/tests/test_truncated_cds.fa -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,745 copying Mikado/tests/test_truncated_cds.fa.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,749 copying Mikado/tests/test_truncated_cds.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,752 copying Mikado/tests/transcripts.fasta.prodigal.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,760 copying Mikado/tests/trinity.bam -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,764 copying Mikado/tests/trinity.bed12 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,768 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,773 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,779 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,785 copying Mikado/tests/trinity.ids -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,789 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,794 copying Mikado/tests/trinity.minimap2.bam -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,799 copying Mikado/tests/trinity.minimap2.bam.bai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,804 copying Mikado/tests/trinity.no_transcript_feature.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,809 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,813 copying Mikado/tests/trinity_unsorted.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,818 copying Mikado/tests/trinity_unsorted.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:36,824 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:37,149 copying Mikado/tests/uniprot_sprot_plants.fasta.gz.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:37,204 copying Mikado/tests/uniprot_sprot_plants.fasta.gz.gzi -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:37,210 copying Mikado/tests/zom_junctions.bed -> build/lib.linux-armv7l-cpython-39/Mikado/tests 2022-06-10T00:04:37,214 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data 2022-06-10T00:04:37,216 copying Mikado/tests/blast_data/diamond.0.9.30.tsv.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data 2022-06-10T00:04:37,223 copying Mikado/tests/blast_data/diamond.0.9.30.xml.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data 2022-06-10T00:04:37,234 copying Mikado/tests/blast_data/transcripts.fasta -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data 2022-06-10T00:04:37,249 copying Mikado/tests/blast_data/transcripts.fasta.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data 2022-06-10T00:04:37,254 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests 2022-06-10T00:04:37,255 copying Mikado/tests/blast_input_tests/commands.sh -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests 2022-06-10T00:04:37,259 copying Mikado/tests/blast_input_tests/queries.fasta -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests 2022-06-10T00:04:37,265 copying Mikado/tests/blast_input_tests/queries.fasta.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests 2022-06-10T00:04:37,268 copying Mikado/tests/blast_input_tests/uniprot.fasta -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests 2022-06-10T00:04:37,317 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised 2022-06-10T00:04:37,319 copying Mikado/tests/blast_input_tests/sanitised/uniprot.fasta -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised 2022-06-10T00:04:37,365 copying Mikado/tests/blast_input_tests/sanitised/uniprot.fasta.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised 2022-06-10T00:04:37,374 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast 2022-06-10T00:04:37,374 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast/tsv 2022-06-10T00:04:37,376 copying Mikado/tests/blast_input_tests/sanitised/blast/tsv/blast.tsv.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast/tsv 2022-06-10T00:04:37,381 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast/xml 2022-06-10T00:04:37,382 copying Mikado/tests/blast_input_tests/sanitised/blast/xml/blast.xml.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast/xml 2022-06-10T00:04:37,388 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids 2022-06-10T00:04:37,389 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/tsv 2022-06-10T00:04:37,390 copying Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/tsv/blast.tsv.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/tsv 2022-06-10T00:04:37,396 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/xml 2022-06-10T00:04:37,397 copying Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/xml/blast.xml.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/xml 2022-06-10T00:04:37,403 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond 2022-06-10T00:04:37,403 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/daa 2022-06-10T00:04:37,405 copying Mikado/tests/blast_input_tests/sanitised/diamond/daa/blast.daa -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/daa 2022-06-10T00:04:37,409 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/tsv 2022-06-10T00:04:37,411 copying Mikado/tests/blast_input_tests/sanitised/diamond/tsv/blast.tsv.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/tsv 2022-06-10T00:04:37,415 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/xml 2022-06-10T00:04:37,416 copying Mikado/tests/blast_input_tests/sanitised/diamond/xml/blast.xml.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/xml 2022-06-10T00:04:37,420 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot 2022-06-10T00:04:37,422 copying Mikado/tests/blast_input_tests/uniprot/uniprot.fasta -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot 2022-06-10T00:04:37,476 copying Mikado/tests/blast_input_tests/uniprot/uniprot.fasta.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot 2022-06-10T00:04:37,484 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast 2022-06-10T00:04:37,485 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast/tsv 2022-06-10T00:04:37,487 copying Mikado/tests/blast_input_tests/uniprot/blast/tsv/blast.tsv.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast/tsv 2022-06-10T00:04:37,492 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast/xml 2022-06-10T00:04:37,493 copying Mikado/tests/blast_input_tests/uniprot/blast/xml/blast.xml.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast/xml 2022-06-10T00:04:37,498 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids 2022-06-10T00:04:37,499 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/tsv 2022-06-10T00:04:37,501 copying Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/tsv/blast.tsv.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/tsv 2022-06-10T00:04:37,505 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/xml 2022-06-10T00:04:37,507 copying Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/xml/blast.xml.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/xml 2022-06-10T00:04:37,512 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond 2022-06-10T00:04:37,512 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/daa 2022-06-10T00:04:37,514 copying Mikado/tests/blast_input_tests/uniprot/diamond/daa/blast.daa -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/daa 2022-06-10T00:04:37,519 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/tsv 2022-06-10T00:04:37,520 copying Mikado/tests/blast_input_tests/uniprot/diamond/tsv/blast.tsv.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/tsv 2022-06-10T00:04:37,524 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/xml 2022-06-10T00:04:37,526 copying Mikado/tests/blast_input_tests/uniprot/diamond/xml/blast.xml.gz -> build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/xml 2022-06-10T00:04:37,530 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test 2022-06-10T00:04:37,531 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test 2022-06-10T00:04:37,536 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test 2022-06-10T00:04:37,540 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external 2022-06-10T00:04:37,542 copying Mikado/tests/test_external/abundance.h5 -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external 2022-06-10T00:04:37,548 copying Mikado/tests/test_external/abundance.tsv -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external 2022-06-10T00:04:37,553 copying Mikado/tests/test_external/data.txt -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external 2022-06-10T00:04:37,557 copying Mikado/tests/test_external/mikado_prepared.fasta -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external 2022-06-10T00:04:37,570 copying Mikado/tests/test_external/mikado_prepared.fasta.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external 2022-06-10T00:04:37,575 copying Mikado/tests/test_external/wrong_1.tsv -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external 2022-06-10T00:04:37,579 copying Mikado/tests/test_external/wrong_2.tsv -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external 2022-06-10T00:04:37,583 creating build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid 2022-06-10T00:04:37,585 copying Mikado/tests/test_external_aphid/annotation_run1.metrics.testds.txt -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid 2022-06-10T00:04:37,589 copying Mikado/tests/test_external_aphid/aphid.scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid 2022-06-10T00:04:37,594 copying Mikado/tests/test_external_aphid/mikado.configuration.testds.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid 2022-06-10T00:04:37,599 copying Mikado/tests/test_external_aphid/mikado_prepared.testds.fasta -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid 2022-06-10T00:04:37,603 copying Mikado/tests/test_external_aphid/mikado_prepared.testds.fasta.fai -> build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid 2022-06-10T00:04:37,607 creating build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2022-06-10T00:04:37,608 copying Mikado/configuration/scoring_files/mammalian.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2022-06-10T00:04:37,612 copying Mikado/configuration/scoring_files/plant.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files 2022-06-10T00:04:37,616 creating build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,618 copying Mikado/configuration/scoring_files/HISTORIC/athaliana_scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,622 copying Mikado/configuration/scoring_files/HISTORIC/celegans_scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,626 copying Mikado/configuration/scoring_files/HISTORIC/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,630 copying Mikado/configuration/scoring_files/HISTORIC/hsapiens_scoring.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,635 copying Mikado/configuration/scoring_files/HISTORIC/human.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,639 copying Mikado/configuration/scoring_files/HISTORIC/insects.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,643 copying Mikado/configuration/scoring_files/HISTORIC/mammalian.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,646 copying Mikado/configuration/scoring_files/HISTORIC/plant.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,650 copying Mikado/configuration/scoring_files/HISTORIC/plants.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,655 copying Mikado/configuration/scoring_files/HISTORIC/scerevisiae.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,659 copying Mikado/configuration/scoring_files/HISTORIC/worm.yaml -> build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:04:37,662 copying Mikado/serializers/blast_serializer/aln_string_parser.cpp -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:37,715 copying Mikado/serializers/blast_serializer/aln_string_parser.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:37,719 copying Mikado/serializers/blast_serializer/btop_parser.cpp -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:37,778 copying Mikado/serializers/blast_serializer/btop_parser.pxd -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:37,782 copying Mikado/serializers/blast_serializer/btop_parser.pyx -> build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:04:37,820 running build_ext 2022-06-10T00:04:37,825 building 'Mikado.utilities.overlap' extension 2022-06-10T00:04:38,593 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-06-10T00:04:38,595 creating build/temp.linux-armv7l-cpython-39 2022-06-10T00:04:38,595 creating build/temp.linux-armv7l-cpython-39/Mikado 2022-06-10T00:04:38,596 creating build/temp.linux-armv7l-cpython-39/Mikado/utilities 2022-06-10T00:04:38,598 INFO: compile options: '-DNPY_NO_DEPRECATED_API=NPY_1_9_API_VERSION -I/usr/include/python3.9 -c' 2022-06-10T00:04:38,599 INFO: arm-linux-gnueabihf-gcc: Mikado/utilities/overlap.c 2022-06-10T00:04:43,350 INFO: arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/utilities/overlap.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so 2022-06-10T00:04:43,602 building 'Mikado.utilities.f1' extension 2022-06-10T00:04:43,603 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-06-10T00:04:43,604 INFO: compile options: '-DNPY_NO_DEPRECATED_API=NPY_1_9_API_VERSION -I/usr/include/python3.9 -c' 2022-06-10T00:04:43,605 INFO: arm-linux-gnueabihf-gcc: Mikado/utilities/f1.c 2022-06-10T00:04:47,364 INFO: arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/utilities/f1.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/utilities/f1.cpython-39-arm-linux-gnueabihf.so 2022-06-10T00:04:47,605 building 'Mikado.scales.contrast' extension 2022-06-10T00:04:47,606 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-06-10T00:04:47,607 creating build/temp.linux-armv7l-cpython-39/Mikado/scales 2022-06-10T00:04:47,608 INFO: compile options: '-DNPY_NO_DEPRECATED_API=NPY_1_9_API_VERSION -I/usr/include/python3.9 -c' 2022-06-10T00:04:47,609 INFO: arm-linux-gnueabihf-gcc: Mikado/scales/contrast.cpp 2022-06-10T00:05:17,240 INFO: arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/scales/contrast.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so 2022-06-10T00:05:17,666 building 'Mikado.utilities.intervaltree' extension 2022-06-10T00:05:17,667 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-06-10T00:05:17,668 INFO: compile options: '-DNPY_NO_DEPRECATED_API=NPY_1_9_API_VERSION -I/usr/include/python3.9 -c' 2022-06-10T00:05:17,670 INFO: arm-linux-gnueabihf-gcc: Mikado/utilities/intervaltree.cpp 2022-06-10T00:05:54,857 INFO: arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.cpython-39-arm-linux-gnueabihf.so 2022-06-10T00:05:55,376 building 'Mikado.serializers.blast_serializer.btop_parser' extension 2022-06-10T00:05:55,377 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-06-10T00:05:55,379 creating build/temp.linux-armv7l-cpython-39/Mikado/serializers 2022-06-10T00:05:55,379 creating build/temp.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer 2022-06-10T00:05:55,380 INFO: compile options: '-DNPY_NO_DEPRECATED_API=NPY_1_9_API_VERSION -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' 2022-06-10T00:05:55,382 INFO: arm-linux-gnueabihf-gcc: Mikado/serializers/blast_serializer/btop_parser.cpp 2022-06-10T00:06:29,855 INFO: arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/btop_parser.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/btop_parser.cpython-39-arm-linux-gnueabihf.so 2022-06-10T00:06:30,526 building 'Mikado.serializers.blast_serializer.aln_string_parser' extension 2022-06-10T00:06:30,527 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2022-06-10T00:06:30,528 INFO: compile options: '-DNPY_NO_DEPRECATED_API=NPY_1_9_API_VERSION -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' 2022-06-10T00:06:30,529 INFO: arm-linux-gnueabihf-gcc: Mikado/serializers/blast_serializer/aln_string_parser.cpp 2022-06-10T00:07:07,598 INFO: arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/aln_string_parser.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/aln_string_parser.cpython-39-arm-linux-gnueabihf.so 2022-06-10T00:07:08,274 running build_scripts 2022-06-10T00:07:08,276 creating build/scripts-3.9 2022-06-10T00:07:08,280 copying util/tease_maker_apart.py -> build/scripts-3.9 2022-06-10T00:07:08,284 copying and adjusting util/align_collect.py -> build/scripts-3.9 2022-06-10T00:07:08,287 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.9 2022-06-10T00:07:08,289 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.9 2022-06-10T00:07:08,292 copying and adjusting util/remove_from_embl.py -> build/scripts-3.9 2022-06-10T00:07:08,296 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.9 2022-06-10T00:07:08,298 copying and adjusting util/remove_utrs.py -> build/scripts-3.9 2022-06-10T00:07:08,301 copying and adjusting util/extract_promoter_regions.py -> build/scripts-3.9 2022-06-10T00:07:08,305 copying and adjusting util/bam2gtf.py -> build/scripts-3.9 2022-06-10T00:07:08,308 copying and adjusting util/grep.py -> build/scripts-3.9 2022-06-10T00:07:08,311 copying and adjusting util/class_run.py -> build/scripts-3.9 2022-06-10T00:07:08,314 copying and adjusting util/asm_collect.py -> build/scripts-3.9 2022-06-10T00:07:08,317 copying and adjusting util/split_fasta.py -> build/scripts-3.9 2022-06-10T00:07:08,320 copying and adjusting util/calculate_distances.py -> build/scripts-3.9 2022-06-10T00:07:08,324 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.9 2022-06-10T00:07:08,327 copying and adjusting util/convert_cdna_match_gff3.py -> build/scripts-3.9 2022-06-10T00:07:08,331 copying util/extract_test_case.py -> build/scripts-3.9 2022-06-10T00:07:08,335 copying and adjusting util/trim_long_introns.py -> build/scripts-3.9 2022-06-10T00:07:08,339 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.9 2022-06-10T00:07:08,341 changing mode of build/scripts-3.9/tease_maker_apart.py from 644 to 755 2022-06-10T00:07:08,342 changing mode of build/scripts-3.9/align_collect.py from 644 to 755 2022-06-10T00:07:08,342 changing mode of build/scripts-3.9/getFastaFromIds.py from 644 to 755 2022-06-10T00:07:08,343 changing mode of build/scripts-3.9/gffjunc_to_bed12.py from 644 to 755 2022-06-10T00:07:08,344 changing mode of build/scripts-3.9/remove_from_embl.py from 644 to 755 2022-06-10T00:07:08,344 changing mode of build/scripts-3.9/sanitize_blast_db.py from 644 to 755 2022-06-10T00:07:08,344 changing mode of build/scripts-3.9/remove_utrs.py from 644 to 755 2022-06-10T00:07:08,345 changing mode of build/scripts-3.9/extract_promoter_regions.py from 644 to 755 2022-06-10T00:07:08,345 changing mode of build/scripts-3.9/bam2gtf.py from 644 to 755 2022-06-10T00:07:08,346 changing mode of build/scripts-3.9/grep.py from 644 to 755 2022-06-10T00:07:08,346 changing mode of build/scripts-3.9/class_run.py from 644 to 755 2022-06-10T00:07:08,347 changing mode of build/scripts-3.9/asm_collect.py from 644 to 755 2022-06-10T00:07:08,347 changing mode of build/scripts-3.9/split_fasta.py from 644 to 755 2022-06-10T00:07:08,348 changing mode of build/scripts-3.9/calculate_distances.py from 644 to 755 2022-06-10T00:07:08,348 changing mode of build/scripts-3.9/merge_junction_bed12.py from 644 to 755 2022-06-10T00:07:08,349 changing mode of build/scripts-3.9/convert_cdna_match_gff3.py from 644 to 755 2022-06-10T00:07:08,349 changing mode of build/scripts-3.9/extract_test_case.py from 644 to 755 2022-06-10T00:07:08,350 changing mode of build/scripts-3.9/trim_long_introns.py from 644 to 755 2022-06-10T00:07:08,350 changing mode of build/scripts-3.9/add_transcript_feature_to_gtf.py from 644 to 755 2022-06-10T00:07:09,576 installing to build/bdist.linux-armv7l/wheel 2022-06-10T00:07:09,577 running install 2022-06-10T00:07:09,639 running install_lib 2022-06-10T00:07:10,243 creating build/bdist.linux-armv7l 2022-06-10T00:07:10,244 creating build/bdist.linux-armv7l/wheel 2022-06-10T00:07:10,247 creating build/bdist.linux-armv7l/wheel/Mikado 2022-06-10T00:07:10,250 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2022-06-10T00:07:10,252 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/assemble.smk -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2022-06-10T00:07:10,259 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/assemble.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2022-06-10T00:07:10,263 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2022-06-10T00:07:10,268 creating build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,270 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/trinity.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,274 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/prodigal.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,278 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/diamond.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,282 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/star.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,286 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/blast.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,290 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/gmap.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,293 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/gnuplot.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,297 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/samtools.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,301 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/scallop.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,305 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/cufflinks.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,309 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/stringtie.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,313 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/tophat2.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,317 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/portcullis.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,320 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/hisat2.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,324 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/envs/transdecoder.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin/envs 2022-06-10T00:07:10,328 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/mikado.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2022-06-10T00:07:10,332 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2022-06-10T00:07:10,337 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2022-06-10T00:07:10,341 copying build/lib.linux-armv7l-cpython-39/Mikado/daijin/mikado.smk -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2022-06-10T00:07:10,347 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2022-06-10T00:07:10,349 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/pad.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2022-06-10T00:07:10,355 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2022-06-10T00:07:10,359 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcriptcomputer.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2022-06-10T00:07:10,363 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2022-06-10T00:07:10,364 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2022-06-10T00:07:10,370 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2022-06-10T00:07:10,375 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2022-06-10T00:07:10,378 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/reference_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2022-06-10T00:07:10,383 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2022-06-10T00:07:10,386 copying build/lib.linux-armv7l-cpython-39/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2022-06-10T00:07:10,392 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,394 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.cpp -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,447 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,451 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/namespace.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,455 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,465 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,469 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/f1.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,478 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,481 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/f1.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,484 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/file_type.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,488 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,491 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,502 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,507 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/f1.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,518 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,522 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,526 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/f1.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,530 copying build/lib.linux-armv7l-cpython-39/Mikado/utilities/intervaltree.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2022-06-10T00:07:10,592 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,593 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,598 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,603 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,609 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,610 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,614 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,618 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/collapse_compare_stats.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,623 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,627 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,630 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,633 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,638 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,641 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2022-06-10T00:07:10,645 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,649 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,654 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,657 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,663 copying build/lib.linux-armv7l-cpython-39/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2022-06-10T00:07:10,667 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2022-06-10T00:07:10,668 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2022-06-10T00:07:10,673 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2022-06-10T00:07:10,678 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2022-06-10T00:07:10,682 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2022-06-10T00:07:10,687 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,688 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,693 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/aln_string_parser.cpp -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,745 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,748 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/blast_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,753 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,756 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/aln_string_parser.pyx -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,759 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/btop_parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,811 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,815 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/tabular_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,820 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/btop_parser.pxd -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,823 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,827 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,831 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/btop_parser.pyx -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,834 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/aln_string_parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,889 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/tab_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,892 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/xml_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,896 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,899 copying build/lib.linux-armv7l-cpython-39/Mikado/serializers/blast_serializer/btop_parser.cpp -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2022-06-10T00:07:10,952 copying build/lib.linux-armv7l-cpython-39/Mikado/version.py -> build/bdist.linux-armv7l/wheel/Mikado 2022-06-10T00:07:10,956 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,958 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/bam_parser.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,961 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,969 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,973 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/parser.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,976 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,980 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,985 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,990 copying build/lib.linux-armv7l-cpython-39/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2022-06-10T00:07:10,993 copying build/lib.linux-armv7l-cpython-39/Mikado/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado 2022-06-10T00:07:10,998 creating build/bdist.linux-armv7l/wheel/Mikado/_transcripts 2022-06-10T00:07:10,999 copying build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/transcript_base.py -> build/bdist.linux-armv7l/wheel/Mikado/_transcripts 2022-06-10T00:07:11,010 copying build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/scoring_configuration.py -> build/bdist.linux-armv7l/wheel/Mikado/_transcripts 2022-06-10T00:07:11,015 copying build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/_transcripts 2022-06-10T00:07:11,019 creating build/bdist.linux-armv7l/wheel/Mikado/_transcripts/transcript_methods 2022-06-10T00:07:11,020 copying build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/Mikado/_transcripts/transcript_methods 2022-06-10T00:07:11,026 copying build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/Mikado/_transcripts/transcript_methods 2022-06-10T00:07:11,031 copying build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/_transcripts/transcript_methods 2022-06-10T00:07:11,035 copying build/lib.linux-armv7l-cpython-39/Mikado/_transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/_transcripts 2022-06-10T00:07:11,039 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2022-06-10T00:07:11,049 copying build/lib.linux-armv7l-cpython-39/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2022-06-10T00:07:11,055 copying build/lib.linux-armv7l-cpython-39/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2022-06-10T00:07:11,061 copying build/lib.linux-armv7l-cpython-39/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2022-06-10T00:07:11,066 copying build/lib.linux-armv7l-cpython-39/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2022-06-10T00:07:11,069 copying build/lib.linux-armv7l-cpython-39/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/Mikado 2022-06-10T00:07:11,074 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,076 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,083 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,088 creating build/bdist.linux-armv7l/wheel/Mikado/scales/prediction_parsers 2022-06-10T00:07:11,089 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers/parse_gtf_prediction.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/prediction_parsers 2022-06-10T00:07:11,092 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers/parse_gff3_prediction.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/prediction_parsers 2022-06-10T00:07:11,096 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers/transmission.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/prediction_parsers 2022-06-10T00:07:11,099 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers/parse_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/prediction_parsers 2022-06-10T00:07:11,102 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/prediction_parsers 2022-06-10T00:07:11,106 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/prediction_parsers/parse_bam_prediction.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/prediction_parsers 2022-06-10T00:07:11,110 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.cpp -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,137 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,142 creating build/bdist.linux-armv7l/wheel/Mikado/scales/reference_preparation 2022-06-10T00:07:11,144 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation/gene_dict.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/reference_preparation 2022-06-10T00:07:11,148 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/reference_preparation 2022-06-10T00:07:11,151 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation/indexing.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/reference_preparation 2022-06-10T00:07:11,156 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/reference_preparation/prepare_reference.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/reference_preparation 2022-06-10T00:07:11,160 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,165 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,169 creating build/bdist.linux-armv7l/wheel/Mikado/scales/assignment 2022-06-10T00:07:11,171 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/assignment/assigner.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/assignment 2022-06-10T00:07:11,178 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/assignment/distributed.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/assignment 2022-06-10T00:07:11,181 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/assignment/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales/assignment 2022-06-10T00:07:11,184 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,190 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,228 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,231 copying build/lib.linux-armv7l-cpython-39/Mikado/scales/calculator.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2022-06-10T00:07:11,238 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,240 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,244 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,250 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,254 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,259 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,269 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,272 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,280 copying build/lib.linux-armv7l-cpython-39/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2022-06-10T00:07:11,288 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2022-06-10T00:07:11,289 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/_merge_loci_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2022-06-10T00:07:11,294 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2022-06-10T00:07:11,299 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2022-06-10T00:07:11,305 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/_locus_line_creator.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2022-06-10T00:07:11,308 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/_loci_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2022-06-10T00:07:11,312 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2022-06-10T00:07:11,315 copying build/lib.linux-armv7l-cpython-39/Mikado/picking/_locus_single_printer.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2022-06-10T00:07:11,323 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,324 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_mRNA.bam.bai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,328 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/cds_test_1.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,331 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado_prepared.fasta.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,334 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,339 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_truncated_cds.fa -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,343 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_blast_inputs.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,348 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/uniprot_sprot_plants.fasta.gz.gzi -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,352 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity_unsorted.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,357 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,361 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,374 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.ids -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,378 creating build/bdist.linux-armv7l/wheel/Mikado/tests/test_external 2022-06-10T00:07:11,379 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external/mikado_prepared.fasta.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external 2022-06-10T00:07:11,384 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external/wrong_2.tsv -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external 2022-06-10T00:07:11,387 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external/mikado_prepared.fasta -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external 2022-06-10T00:07:11,403 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external/abundance.h5 -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external 2022-06-10T00:07:11,409 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external/data.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external 2022-06-10T00:07:11,412 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external/wrong_1.tsv -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external 2022-06-10T00:07:11,416 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external/abundance.tsv -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external 2022-06-10T00:07:11,421 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_compare.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,425 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_transcript_positive.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,433 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2022-06-10T00:07:11,436 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2022-06-10T00:07:11,440 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2022-06-10T00:07:11,444 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/transcripts.fasta.prodigal.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,451 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/zom_junctions.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,454 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/padding_test.bed12 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,457 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/check_seed.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,462 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,467 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/padding_test.fa.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,470 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/complete_padding.bed12 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,473 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/Chrysemys_picta_bellii_problematic.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,477 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/parser_test.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,481 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_light.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,485 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/annotation.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,488 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_transcript_negative.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,493 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/intervaltree_test.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,498 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,501 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/locus_test.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,517 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,830 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/external.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,834 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/pad_three_neg.bed12 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,838 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/check_seed.fa -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,842 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado_prepared.fasta -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,854 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,857 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.bed12 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,861 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/neg_pad.fa.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,864 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/padding_test.fa -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,871 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:11,878 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,294 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests 2022-06-10T00:07:12,297 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised 2022-06-10T00:07:12,300 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast 2022-06-10T00:07:12,302 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast/tsv 2022-06-10T00:07:12,304 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast/tsv/blast.tsv.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast/tsv 2022-06-10T00:07:12,309 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast/xml 2022-06-10T00:07:12,310 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast/xml/blast.xml.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast/xml 2022-06-10T00:07:12,316 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/diamond 2022-06-10T00:07:12,318 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/diamond/daa 2022-06-10T00:07:12,320 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/daa/blast.daa -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/diamond/daa 2022-06-10T00:07:12,325 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/diamond/tsv 2022-06-10T00:07:12,326 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/tsv/blast.tsv.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/diamond/tsv 2022-06-10T00:07:12,330 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/diamond/xml 2022-06-10T00:07:12,332 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/diamond/xml/blast.xml.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/diamond/xml 2022-06-10T00:07:12,336 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/uniprot.fasta -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised 2022-06-10T00:07:12,379 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids 2022-06-10T00:07:12,381 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/tsv 2022-06-10T00:07:12,383 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/tsv/blast.tsv.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/tsv 2022-06-10T00:07:12,388 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/xml 2022-06-10T00:07:12,389 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/xml/blast.xml.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/xml 2022-06-10T00:07:12,394 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/sanitised/uniprot.fasta.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/sanitised 2022-06-10T00:07:12,403 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/queries.fasta -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests 2022-06-10T00:07:12,409 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/commands.sh -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests 2022-06-10T00:07:12,413 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot 2022-06-10T00:07:12,416 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast 2022-06-10T00:07:12,418 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast/tsv 2022-06-10T00:07:12,420 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast/tsv/blast.tsv.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast/tsv 2022-06-10T00:07:12,425 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast/xml 2022-06-10T00:07:12,427 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast/xml/blast.xml.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast/xml 2022-06-10T00:07:12,433 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/diamond 2022-06-10T00:07:12,435 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/diamond/daa 2022-06-10T00:07:12,437 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/daa/blast.daa -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/diamond/daa 2022-06-10T00:07:12,441 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/diamond/tsv 2022-06-10T00:07:12,443 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/tsv/blast.tsv.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/diamond/tsv 2022-06-10T00:07:12,447 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/diamond/xml 2022-06-10T00:07:12,449 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/diamond/xml/blast.xml.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/diamond/xml 2022-06-10T00:07:12,452 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/uniprot.fasta -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot 2022-06-10T00:07:12,519 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids 2022-06-10T00:07:12,521 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/tsv 2022-06-10T00:07:12,523 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/tsv/blast.tsv.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/tsv 2022-06-10T00:07:12,529 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/xml 2022-06-10T00:07:12,530 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/xml/blast.xml.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/xml 2022-06-10T00:07:12,535 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot/uniprot.fasta.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests/uniprot 2022-06-10T00:07:12,542 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/uniprot.fasta -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests 2022-06-10T00:07:12,598 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_input_tests/queries.fasta.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_input_tests 2022-06-10T00:07:12,602 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/gtf_check.gtf.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,606 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/NC_037283.1.fa.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,659 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_serialise_external.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,663 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_mRNA.bam -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,673 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,677 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/chunk-001-proteins.xml.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,685 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/cufflinks.no_transcript.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,690 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/padding_test.rev_compl.bed12 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,693 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/pad_utr.bed12 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,697 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,712 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/assigner_test.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,718 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,722 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,727 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/check_seed.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,731 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,737 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.bam -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,740 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/Chrysemys_picta_bellii_problematic.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,744 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/phasing_padding.bed12 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,747 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_truncated_cds.fa.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,750 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/padding_test.rev_compl.fa -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,758 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.no_transcript_feature.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,762 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/prepare_misc_test.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,767 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,770 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,774 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,779 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/annotation.gff3.stats -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,783 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,788 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,792 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_transcript_single.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,798 creating build/bdist.linux-armv7l/wheel/Mikado/tests/test_external_aphid 2022-06-10T00:07:12,799 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid/mikado.configuration.testds.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external_aphid 2022-06-10T00:07:12,804 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid/mikado_prepared.testds.fasta.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external_aphid 2022-06-10T00:07:12,807 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid/annotation_run1.metrics.testds.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external_aphid 2022-06-10T00:07:12,811 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid/mikado_prepared.testds.fasta -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external_aphid 2022-06-10T00:07:12,814 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_aphid/aphid.scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests/test_external_aphid 2022-06-10T00:07:12,818 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_truncated_cds.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,822 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_configurators.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,826 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,831 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/ERR588038.R1.fq.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,858 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/pacbio.bam -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,862 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/orf_test.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,867 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,873 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,879 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,883 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.minimap2.bam -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,888 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_serialise_junctions.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,894 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/neg_pad.fa -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,900 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,904 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,909 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/SRR5037293.pacbio.fastq.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,913 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/uniprot_sprot_plants.fasta.gz.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,975 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,981 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_external_async.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,986 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity_unsorted.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,991 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/padding_test.rev_compl.fa.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,995 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:12,999 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/utilities_test.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,004 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/Chrysemys_picta_bellii_problematic.list.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,008 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,012 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/junctions_duplicates.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,016 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,696 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test.reads.bam -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,701 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/chr5.fas.gz.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,705 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/ERR588038.R2.fq.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,733 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.minimap2.bam.bai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,738 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/test_scores.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,742 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/cds_test_2.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,746 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/chr5.fas.gz.gzi -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,750 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,755 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/reference.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,760 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:13,770 creating build/bdist.linux-armv7l/wheel/Mikado/tests/blast_data 2022-06-10T00:07:13,772 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data/transcripts.fasta -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_data 2022-06-10T00:07:13,786 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data/diamond.0.9.30.xml.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_data 2022-06-10T00:07:13,795 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data/diamond.0.9.30.tsv.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_data 2022-06-10T00:07:13,802 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/blast_data/transcripts.fasta.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests/blast_data 2022-06-10T00:07:13,808 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:14,008 copying build/lib.linux-armv7l-cpython-39/Mikado/tests/neg_pad.bed12 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2022-06-10T00:07:14,012 copying build/lib.linux-armv7l-cpython-39/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado 2022-06-10T00:07:14,018 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,020 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/picking_config.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,025 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/serialise_config.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,030 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,035 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,040 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/prepare_config.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,045 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/daijin_configuration.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,050 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/configuration.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,055 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2022-06-10T00:07:14,061 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2022-06-10T00:07:14,063 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/plant.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2022-06-10T00:07:14,067 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/mammalian.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2022-06-10T00:07:14,073 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,075 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/plants.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,079 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/worm.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,083 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/dmelanogaster_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,088 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/plant.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,092 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/celegans_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,096 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/insects.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,100 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/mammalian.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,104 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/scerevisiae.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,108 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/hsapiens_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,112 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/human.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,116 copying build/lib.linux-armv7l-cpython-39/Mikado/configuration/scoring_files/HISTORIC/athaliana_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files/HISTORIC 2022-06-10T00:07:14,120 running install_egg_info 2022-06-10T00:07:14,719 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/Mikado-2.3.4-py3.9.egg-info 2022-06-10T00:07:14,751 running install_scripts 2022-06-10T00:07:14,755 creating build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data 2022-06-10T00:07:14,756 creating build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,758 copying build/scripts-3.9/tease_maker_apart.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,763 copying build/scripts-3.9/align_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,767 copying build/scripts-3.9/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,771 copying build/scripts-3.9/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,775 copying build/scripts-3.9/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,780 copying build/scripts-3.9/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,784 copying build/scripts-3.9/remove_utrs.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,788 copying build/scripts-3.9/extract_promoter_regions.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,792 copying build/scripts-3.9/bam2gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,796 copying build/scripts-3.9/grep.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,799 copying build/scripts-3.9/class_run.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,804 copying build/scripts-3.9/asm_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,807 copying build/scripts-3.9/split_fasta.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,811 copying build/scripts-3.9/calculate_distances.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,815 copying build/scripts-3.9/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,819 copying build/scripts-3.9/convert_cdna_match_gff3.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,823 copying build/scripts-3.9/extract_test_case.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,827 copying build/scripts-3.9/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,831 copying build/scripts-3.9/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts 2022-06-10T00:07:14,835 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/tease_maker_apart.py to 755 2022-06-10T00:07:14,835 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/align_collect.py to 755 2022-06-10T00:07:14,836 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/getFastaFromIds.py to 755 2022-06-10T00:07:14,836 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/gffjunc_to_bed12.py to 755 2022-06-10T00:07:14,837 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/remove_from_embl.py to 755 2022-06-10T00:07:14,837 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/sanitize_blast_db.py to 755 2022-06-10T00:07:14,838 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/remove_utrs.py to 755 2022-06-10T00:07:14,838 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/extract_promoter_regions.py to 755 2022-06-10T00:07:14,839 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/bam2gtf.py to 755 2022-06-10T00:07:14,839 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/grep.py to 755 2022-06-10T00:07:14,840 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/class_run.py to 755 2022-06-10T00:07:14,840 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/asm_collect.py to 755 2022-06-10T00:07:14,841 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/split_fasta.py to 755 2022-06-10T00:07:14,842 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/calculate_distances.py to 755 2022-06-10T00:07:14,842 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/merge_junction_bed12.py to 755 2022-06-10T00:07:14,843 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/convert_cdna_match_gff3.py to 755 2022-06-10T00:07:14,843 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/extract_test_case.py to 755 2022-06-10T00:07:14,844 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/trim_long_introns.py to 755 2022-06-10T00:07:14,844 changing mode of build/bdist.linux-armv7l/wheel/Mikado-2.3.4.data/scripts/add_transcript_feature_to_gtf.py to 755 2022-06-10T00:07:15,011 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-06-10T00:07:15,014 adding license file "AUTHORS" (matched pattern "AUTHORS*") 2022-06-10T00:07:15,067 creating build/bdist.linux-armv7l/wheel/Mikado-2.3.4.dist-info/WHEEL 2022-06-10T00:07:15,072 creating '/tmp/pip-wheel-i3twk9z0/tmpx7r3v22s/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-06-10T00:07:15,078 adding 'Mikado/__init__.py' 2022-06-10T00:07:15,081 adding 'Mikado/__main__.py' 2022-06-10T00:07:15,083 adding 'Mikado/exceptions.py' 2022-06-10T00:07:15,085 adding 'Mikado/version.py' 2022-06-10T00:07:15,089 adding 'Mikado/_transcripts/__init__.py' 2022-06-10T00:07:15,091 adding 'Mikado/_transcripts/clique_methods.py' 2022-06-10T00:07:15,096 adding 'Mikado/_transcripts/scoring_configuration.py' 2022-06-10T00:07:15,131 adding 'Mikado/_transcripts/transcript_base.py' 2022-06-10T00:07:15,137 adding 'Mikado/_transcripts/transcript_methods/__init__.py' 2022-06-10T00:07:15,146 adding 'Mikado/_transcripts/transcript_methods/finalizing.py' 2022-06-10T00:07:15,152 adding 'Mikado/_transcripts/transcript_methods/printing.py' 2022-06-10T00:07:15,158 adding 'Mikado/configuration/__init__.py' 2022-06-10T00:07:15,161 adding 'Mikado/configuration/configuration.py' 2022-06-10T00:07:15,165 adding 'Mikado/configuration/configurator.py' 2022-06-10T00:07:15,169 adding 'Mikado/configuration/daijin_configuration.py' 2022-06-10T00:07:15,173 adding 'Mikado/configuration/daijin_configurator.py' 2022-06-10T00:07:15,178 adding 'Mikado/configuration/picking_config.py' 2022-06-10T00:07:15,181 adding 'Mikado/configuration/prepare_config.py' 2022-06-10T00:07:15,185 adding 'Mikado/configuration/serialise_config.py' 2022-06-10T00:07:15,189 adding 'Mikado/configuration/scoring_files/mammalian.yaml' 2022-06-10T00:07:15,191 adding 'Mikado/configuration/scoring_files/plant.yaml' 2022-06-10T00:07:15,196 adding 'Mikado/configuration/scoring_files/HISTORIC/athaliana_scoring.yaml' 2022-06-10T00:07:15,198 adding 'Mikado/configuration/scoring_files/HISTORIC/celegans_scoring.yaml' 2022-06-10T00:07:15,201 adding 'Mikado/configuration/scoring_files/HISTORIC/dmelanogaster_scoring.yaml' 2022-06-10T00:07:15,203 adding 'Mikado/configuration/scoring_files/HISTORIC/hsapiens_scoring.yaml' 2022-06-10T00:07:15,206 adding 'Mikado/configuration/scoring_files/HISTORIC/human.yaml' 2022-06-10T00:07:15,208 adding 'Mikado/configuration/scoring_files/HISTORIC/insects.yaml' 2022-06-10T00:07:15,211 adding 'Mikado/configuration/scoring_files/HISTORIC/mammalian.yaml' 2022-06-10T00:07:15,213 adding 'Mikado/configuration/scoring_files/HISTORIC/plant.yaml' 2022-06-10T00:07:15,216 adding 'Mikado/configuration/scoring_files/HISTORIC/plants.yaml' 2022-06-10T00:07:15,218 adding 'Mikado/configuration/scoring_files/HISTORIC/scerevisiae.yaml' 2022-06-10T00:07:15,221 adding 'Mikado/configuration/scoring_files/HISTORIC/worm.yaml' 2022-06-10T00:07:15,226 adding 'Mikado/daijin/__init__.py' 2022-06-10T00:07:15,229 adding 'Mikado/daijin/__main__.py' 2022-06-10T00:07:15,233 adding 'Mikado/daijin/assemble.py' 2022-06-10T00:07:15,243 adding 'Mikado/daijin/assemble.smk' 2022-06-10T00:07:15,246 adding 'Mikado/daijin/hpc.yaml' 2022-06-10T00:07:15,249 adding 'Mikado/daijin/mikado.py' 2022-06-10T00:07:15,254 adding 'Mikado/daijin/mikado.smk' 2022-06-10T00:07:15,258 adding 'Mikado/daijin/envs/blast.yaml' 2022-06-10T00:07:15,260 adding 'Mikado/daijin/envs/cufflinks.yaml' 2022-06-10T00:07:15,262 adding 'Mikado/daijin/envs/diamond.yaml' 2022-06-10T00:07:15,264 adding 'Mikado/daijin/envs/gmap.yaml' 2022-06-10T00:07:15,267 adding 'Mikado/daijin/envs/gnuplot.yaml' 2022-06-10T00:07:15,269 adding 'Mikado/daijin/envs/hisat2.yaml' 2022-06-10T00:07:15,271 adding 'Mikado/daijin/envs/portcullis.yaml' 2022-06-10T00:07:15,273 adding 'Mikado/daijin/envs/prodigal.yaml' 2022-06-10T00:07:15,275 adding 'Mikado/daijin/envs/samtools.yaml' 2022-06-10T00:07:15,277 adding 'Mikado/daijin/envs/scallop.yaml' 2022-06-10T00:07:15,279 adding 'Mikado/daijin/envs/star.yaml' 2022-06-10T00:07:15,281 adding 'Mikado/daijin/envs/stringtie.yaml' 2022-06-10T00:07:15,283 adding 'Mikado/daijin/envs/tophat2.yaml' 2022-06-10T00:07:15,285 adding 'Mikado/daijin/envs/transdecoder.yaml' 2022-06-10T00:07:15,287 adding 'Mikado/daijin/envs/trinity.yaml' 2022-06-10T00:07:15,291 adding 'Mikado/loci/__init__.py' 2022-06-10T00:07:15,319 adding 'Mikado/loci/abstractlocus.py' 2022-06-10T00:07:15,324 adding 'Mikado/loci/excluded.py' 2022-06-10T00:07:15,343 adding 'Mikado/loci/locus.py' 2022-06-10T00:07:15,347 adding 'Mikado/loci/monosublocus.py' 2022-06-10T00:07:15,351 adding 'Mikado/loci/monosublocusholder.py' 2022-06-10T00:07:15,358 adding 'Mikado/loci/sublocus.py' 2022-06-10T00:07:15,377 adding 'Mikado/loci/superlocus.py' 2022-06-10T00:07:15,384 adding 'Mikado/parsers/GFF.py' 2022-06-10T00:07:15,388 adding 'Mikado/parsers/GTF.py' 2022-06-10T00:07:15,391 adding 'Mikado/parsers/__init__.py' 2022-06-10T00:07:15,393 adding 'Mikado/parsers/bam_parser.py' 2022-06-10T00:07:15,413 adding 'Mikado/parsers/bed12.py' 2022-06-10T00:07:15,418 adding 'Mikado/parsers/blast_utils.py' 2022-06-10T00:07:15,422 adding 'Mikado/parsers/gfannotation.py' 2022-06-10T00:07:15,425 adding 'Mikado/parsers/parser.py' 2022-06-10T00:07:15,429 adding 'Mikado/picking/__init__.py' 2022-06-10T00:07:15,431 adding 'Mikado/picking/_loci_serialiser.py' 2022-06-10T00:07:15,434 adding 'Mikado/picking/_locus_line_creator.py' 2022-06-10T00:07:15,437 adding 'Mikado/picking/_locus_single_printer.py' 2022-06-10T00:07:15,439 adding 'Mikado/picking/_merge_loci_utils.py' 2022-06-10T00:07:15,446 adding 'Mikado/picking/loci_processer.py' 2022-06-10T00:07:15,458 adding 'Mikado/picking/picker.py' 2022-06-10T00:07:15,462 adding 'Mikado/preparation/__init__.py' 2022-06-10T00:07:15,470 adding 'Mikado/preparation/annotation_parser.py' 2022-06-10T00:07:15,476 adding 'Mikado/preparation/checking.py' 2022-06-10T00:07:15,484 adding 'Mikado/preparation/prepare.py' 2022-06-10T00:07:15,488 adding 'Mikado/scales/__init__.py' 2022-06-10T00:07:15,500 adding 'Mikado/scales/accountant.py' 2022-06-10T00:07:15,508 adding 'Mikado/scales/calculator.py' 2022-06-10T00:07:15,514 adding 'Mikado/scales/class_codes.py' 2022-06-10T00:07:15,517 adding 'Mikado/scales/compare.py' 2022-06-10T00:07:15,611 adding 'Mikado/scales/contrast.cpp' 2022-06-10T00:07:15,953 adding 'Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so' 2022-06-10T00:07:15,969 adding 'Mikado/scales/contrast.pxd' 2022-06-10T00:07:15,975 adding 'Mikado/scales/contrast.pyx' 2022-06-10T00:07:15,978 adding 'Mikado/scales/resultstorer.py' 2022-06-10T00:07:15,981 adding 'Mikado/scales/assignment/__init__.py' 2022-06-10T00:07:15,993 adding 'Mikado/scales/assignment/assigner.py' 2022-06-10T00:07:15,996 adding 'Mikado/scales/assignment/distributed.py' 2022-06-10T00:07:16,001 adding 'Mikado/scales/prediction_parsers/__init__.py' 2022-06-10T00:07:16,003 adding 'Mikado/scales/prediction_parsers/parse_bam_prediction.py' 2022-06-10T00:07:16,005 adding 'Mikado/scales/prediction_parsers/parse_bed12.py' 2022-06-10T00:07:16,008 adding 'Mikado/scales/prediction_parsers/parse_gff3_prediction.py' 2022-06-10T00:07:16,011 adding 'Mikado/scales/prediction_parsers/parse_gtf_prediction.py' 2022-06-10T00:07:16,013 adding 'Mikado/scales/prediction_parsers/transmission.py' 2022-06-10T00:07:16,017 adding 'Mikado/scales/reference_preparation/__init__.py' 2022-06-10T00:07:16,020 adding 'Mikado/scales/reference_preparation/gene_dict.py' 2022-06-10T00:07:16,023 adding 'Mikado/scales/reference_preparation/indexing.py' 2022-06-10T00:07:16,026 adding 'Mikado/scales/reference_preparation/prepare_reference.py' 2022-06-10T00:07:16,030 adding 'Mikado/serializers/__init__.py' 2022-06-10T00:07:16,034 adding 'Mikado/serializers/external.py' 2022-06-10T00:07:16,038 adding 'Mikado/serializers/junction.py' 2022-06-10T00:07:16,044 adding 'Mikado/serializers/orf.py' 2022-06-10T00:07:16,048 adding 'Mikado/serializers/blast_serializer/__init__.py' 2022-06-10T00:07:16,232 adding 'Mikado/serializers/blast_serializer/aln_string_parser.cpp' 2022-06-10T00:07:16,771 adding 'Mikado/serializers/blast_serializer/aln_string_parser.cpython-39-arm-linux-gnueabihf.so' 2022-06-10T00:07:16,794 adding 'Mikado/serializers/blast_serializer/aln_string_parser.pyx' 2022-06-10T00:07:16,799 adding 'Mikado/serializers/blast_serializer/blast_serialiser.py' 2022-06-10T00:07:16,981 adding 'Mikado/serializers/blast_serializer/btop_parser.cpp' 2022-06-10T00:07:17,485 adding 'Mikado/serializers/blast_serializer/btop_parser.cpython-39-arm-linux-gnueabihf.so' 2022-06-10T00:07:17,506 adding 'Mikado/serializers/blast_serializer/btop_parser.pxd' 2022-06-10T00:07:17,509 adding 'Mikado/serializers/blast_serializer/btop_parser.pyx' 2022-06-10T00:07:17,514 adding 'Mikado/serializers/blast_serializer/hit.py' 2022-06-10T00:07:17,518 adding 'Mikado/serializers/blast_serializer/hsp.py' 2022-06-10T00:07:17,521 adding 'Mikado/serializers/blast_serializer/query.py' 2022-06-10T00:07:17,524 adding 'Mikado/serializers/blast_serializer/tab_serialiser.py' 2022-06-10T00:07:17,530 adding 'Mikado/serializers/blast_serializer/tabular_utils.py' 2022-06-10T00:07:17,533 adding 'Mikado/serializers/blast_serializer/target.py' 2022-06-10T00:07:17,536 adding 'Mikado/serializers/blast_serializer/utils.py' 2022-06-10T00:07:17,540 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2022-06-10T00:07:17,543 adding 'Mikado/serializers/blast_serializer/xml_utils.py' 2022-06-10T00:07:17,546 adding 'Mikado/subprograms/__init__.py' 2022-06-10T00:07:17,548 adding 'Mikado/subprograms/__main__.py' 2022-06-10T00:07:17,551 adding 'Mikado/subprograms/_utils.py' 2022-06-10T00:07:17,555 adding 'Mikado/subprograms/compare.py' 2022-06-10T00:07:17,561 adding 'Mikado/subprograms/configure.py' 2022-06-10T00:07:17,568 adding 'Mikado/subprograms/pick.py' 2022-06-10T00:07:17,573 adding 'Mikado/subprograms/prepare.py' 2022-06-10T00:07:17,580 adding 'Mikado/subprograms/serialise.py' 2022-06-10T00:07:17,585 adding 'Mikado/subprograms/util/__init__.py' 2022-06-10T00:07:17,587 adding 'Mikado/subprograms/util/awk_gtf.py' 2022-06-10T00:07:17,590 adding 'Mikado/subprograms/util/class_codes.py' 2022-06-10T00:07:17,594 adding 'Mikado/subprograms/util/collapse_compare_stats.py' 2022-06-10T00:07:17,598 adding 'Mikado/subprograms/util/convert.py' 2022-06-10T00:07:17,602 adding 'Mikado/subprograms/util/grep.py' 2022-06-10T00:07:17,605 adding 'Mikado/subprograms/util/metrics.py' 2022-06-10T00:07:17,607 adding 'Mikado/subprograms/util/stats.py' 2022-06-10T00:07:17,611 adding 'Mikado/subprograms/util/trim.py' 2022-06-10T00:07:17,620 adding 'Mikado/tests/Chrysemys_picta_bellii_problematic.gff3' 2022-06-10T00:07:17,622 adding 'Mikado/tests/Chrysemys_picta_bellii_problematic.list.txt' 2022-06-10T00:07:17,624 adding 'Mikado/tests/Chrysemys_picta_bellii_problematic.txt' 2022-06-10T00:07:17,749 adding 'Mikado/tests/ERR588038.R1.fq.gz' 2022-06-10T00:07:17,895 adding 'Mikado/tests/ERR588038.R2.fq.gz' 2022-06-10T00:07:18,168 adding 'Mikado/tests/NC_037283.1.fa.gz' 2022-06-10T00:07:18,190 adding 'Mikado/tests/SRR5037293.pacbio.fastq.gz' 2022-06-10T00:07:18,192 adding 'Mikado/tests/__init__.py' 2022-06-10T00:07:18,195 adding 'Mikado/tests/annotation.gff3' 2022-06-10T00:07:18,197 adding 'Mikado/tests/annotation.gff3.stats' 2022-06-10T00:07:18,204 adding 'Mikado/tests/assigner_test.py' 2022-06-10T00:07:18,208 adding 'Mikado/tests/cds_test_1.gtf' 2022-06-10T00:07:18,210 adding 'Mikado/tests/cds_test_2.gtf' 2022-06-10T00:07:18,219 adding 'Mikado/tests/check_seed.fa' 2022-06-10T00:07:18,222 adding 'Mikado/tests/check_seed.gtf' 2022-06-10T00:07:18,226 adding 'Mikado/tests/check_seed.yaml' 2022-06-10T00:07:20,507 adding 'Mikado/tests/chr5.fas.gz' 2022-06-10T00:07:20,674 adding 'Mikado/tests/chr5.fas.gz.fai' 2022-06-10T00:07:20,679 adding 'Mikado/tests/chr5.fas.gz.gzi' 2022-06-10T00:07:20,701 adding 'Mikado/tests/chunk-001-proteins.xml.gz' 2022-06-10T00:07:20,705 adding 'Mikado/tests/complete_padding.bed12' 2022-06-10T00:07:20,708 adding 'Mikado/tests/configuration.yaml' 2022-06-10T00:07:20,712 adding 'Mikado/tests/cufflinks.gtf' 2022-06-10T00:07:20,716 adding 'Mikado/tests/cufflinks.no_transcript.gtf' 2022-06-10T00:07:20,718 adding 'Mikado/tests/external.yaml' 2022-06-10T00:07:20,720 adding 'Mikado/tests/genome.fai' 2022-06-10T00:07:20,724 adding 'Mikado/tests/gtf_check.gtf.gz' 2022-06-10T00:07:20,728 adding 'Mikado/tests/intervaltree_test.py' 2022-06-10T00:07:20,741 adding 'Mikado/tests/junctions.bed' 2022-06-10T00:07:20,743 adding 'Mikado/tests/junctions_duplicates.bed' 2022-06-10T00:07:20,794 adding 'Mikado/tests/locus_test.py' 2022-06-10T00:07:20,859 adding 'Mikado/tests/mikado.blast.asn.gz' 2022-06-10T00:07:24,224 adding 'Mikado/tests/mikado.blast.xml' 2022-06-10T00:07:25,851 adding 'Mikado/tests/mikado.db' 2022-06-10T00:07:25,993 adding 'Mikado/tests/mikado_prepared.fasta' 2022-06-10T00:07:26,000 adding 'Mikado/tests/mikado_prepared.fasta.fai' 2022-06-10T00:07:26,012 adding 'Mikado/tests/mikado_prepared.gtf' 2022-06-10T00:07:26,017 adding 'Mikado/tests/neg_pad.bed12' 2022-06-10T00:07:26,058 adding 'Mikado/tests/neg_pad.fa' 2022-06-10T00:07:26,062 adding 'Mikado/tests/neg_pad.fa.fai' 2022-06-10T00:07:26,081 adding 'Mikado/tests/orf_test.py' 2022-06-10T00:07:26,085 adding 'Mikado/tests/pacbio.bam' 2022-06-10T00:07:26,089 adding 'Mikado/tests/pad_three_neg.bed12' 2022-06-10T00:07:26,092 adding 'Mikado/tests/pad_utr.bed12' 2022-06-10T00:07:26,095 adding 'Mikado/tests/padding_test.bed12' 2022-06-10T00:07:26,180 adding 'Mikado/tests/padding_test.fa' 2022-06-10T00:07:26,185 adding 'Mikado/tests/padding_test.fa.fai' 2022-06-10T00:07:26,188 adding 'Mikado/tests/padding_test.rev_compl.bed12' 2022-06-10T00:07:26,273 adding 'Mikado/tests/padding_test.rev_compl.fa' 2022-06-10T00:07:26,278 adding 'Mikado/tests/padding_test.rev_compl.fa.fai' 2022-06-10T00:07:26,283 adding 'Mikado/tests/parser_test.py' 2022-06-10T00:07:26,286 adding 'Mikado/tests/phasing_padding.bed12' 2022-06-10T00:07:26,289 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2022-06-10T00:07:26,295 adding 'Mikado/tests/prepare_misc_test.py' 2022-06-10T00:07:26,300 adding 'Mikado/tests/reference.gff3' 2022-06-10T00:07:26,304 adding 'Mikado/tests/scoring_only_cds.yaml' 2022-06-10T00:07:26,313 adding 'Mikado/tests/test.reads.bam' 2022-06-10T00:07:26,319 adding 'Mikado/tests/test_bed12.py' 2022-06-10T00:07:26,323 adding 'Mikado/tests/test_blast_inputs.py' 2022-06-10T00:07:26,328 adding 'Mikado/tests/test_blast_related.py' 2022-06-10T00:07:26,331 adding 'Mikado/tests/test_clique_methods.py' 2022-06-10T00:07:26,335 adding 'Mikado/tests/test_compare.py' 2022-06-10T00:07:26,340 adding 'Mikado/tests/test_configurators.py' 2022-06-10T00:07:26,343 adding 'Mikado/tests/test_db_utils.py' 2022-06-10T00:07:26,348 adding 'Mikado/tests/test_external_async.py' 2022-06-10T00:07:26,354 adding 'Mikado/tests/test_external_scores.py' 2022-06-10T00:07:26,358 adding 'Mikado/tests/test_gene.py' 2022-06-10T00:07:26,362 adding 'Mikado/tests/test_invalid_orfs.py' 2022-06-10T00:07:26,365 adding 'Mikado/tests/test_light.py' 2022-06-10T00:07:26,401 adding 'Mikado/tests/test_mRNA.bam' 2022-06-10T00:07:26,408 adding 'Mikado/tests/test_mRNA.bam.bai' 2022-06-10T00:07:26,412 adding 'Mikado/tests/test_metrics.py' 2022-06-10T00:07:26,418 adding 'Mikado/tests/test_modifications.py' 2022-06-10T00:07:26,423 adding 'Mikado/tests/test_scores.py' 2022-06-10T00:07:26,427 adding 'Mikado/tests/test_serialise_external.py' 2022-06-10T00:07:26,432 adding 'Mikado/tests/test_serialise_junctions.py' 2022-06-10T00:07:26,439 adding 'Mikado/tests/test_splitting.py' 2022-06-10T00:07:26,467 adding 'Mikado/tests/test_system_calls.py' 2022-06-10T00:07:26,477 adding 'Mikado/tests/test_transcript_checker.py' 2022-06-10T00:07:26,490 adding 'Mikado/tests/test_transcript_methods.py' 2022-06-10T00:07:26,498 adding 'Mikado/tests/test_transcript_negative.py' 2022-06-10T00:07:26,508 adding 'Mikado/tests/test_transcript_positive.py' 2022-06-10T00:07:26,516 adding 'Mikado/tests/test_transcript_single.py' 2022-06-10T00:07:26,525 adding 'Mikado/tests/test_truncated_cds.fa' 2022-06-10T00:07:26,528 adding 'Mikado/tests/test_truncated_cds.fa.fai' 2022-06-10T00:07:26,531 adding 'Mikado/tests/test_truncated_cds.gff3' 2022-06-10T00:07:26,535 adding 'Mikado/tests/test_utils.py' 2022-06-10T00:07:26,544 adding 'Mikado/tests/transcripts.fasta.prodigal.gff3' 2022-06-10T00:07:26,549 adding 'Mikado/tests/trinity.bam' 2022-06-10T00:07:26,553 adding 'Mikado/tests/trinity.bed12' 2022-06-10T00:07:26,558 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2022-06-10T00:07:26,565 adding 'Mikado/tests/trinity.gff3' 2022-06-10T00:07:26,571 adding 'Mikado/tests/trinity.gtf' 2022-06-10T00:07:26,575 adding 'Mikado/tests/trinity.ids' 2022-06-10T00:07:26,580 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2022-06-10T00:07:26,586 adding 'Mikado/tests/trinity.minimap2.bam' 2022-06-10T00:07:26,589 adding 'Mikado/tests/trinity.minimap2.bam.bai' 2022-06-10T00:07:26,594 adding 'Mikado/tests/trinity.no_transcript_feature.gtf' 2022-06-10T00:07:26,598 adding 'Mikado/tests/trinity_stats.txt' 2022-06-10T00:07:26,604 adding 'Mikado/tests/trinity_unsorted.gff3' 2022-06-10T00:07:26,610 adding 'Mikado/tests/trinity_unsorted.gtf' 2022-06-10T00:07:28,527 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2022-06-10T00:07:29,220 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz.fai' 2022-06-10T00:07:29,245 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz.gzi' 2022-06-10T00:07:29,251 adding 'Mikado/tests/utilities_test.py' 2022-06-10T00:07:29,254 adding 'Mikado/tests/zom_junctions.bed' 2022-06-10T00:07:29,264 adding 'Mikado/tests/blast_data/diamond.0.9.30.tsv.gz' 2022-06-10T00:07:29,297 adding 'Mikado/tests/blast_data/diamond.0.9.30.xml.gz' 2022-06-10T00:07:29,385 adding 'Mikado/tests/blast_data/transcripts.fasta' 2022-06-10T00:07:29,392 adding 'Mikado/tests/blast_data/transcripts.fasta.fai' 2022-06-10T00:07:29,396 adding 'Mikado/tests/blast_input_tests/commands.sh' 2022-06-10T00:07:29,413 adding 'Mikado/tests/blast_input_tests/queries.fasta' 2022-06-10T00:07:29,416 adding 'Mikado/tests/blast_input_tests/queries.fasta.fai' 2022-06-10T00:07:29,755 adding 'Mikado/tests/blast_input_tests/uniprot.fasta' 2022-06-10T00:07:30,097 adding 'Mikado/tests/blast_input_tests/sanitised/uniprot.fasta' 2022-06-10T00:07:30,137 adding 'Mikado/tests/blast_input_tests/sanitised/uniprot.fasta.fai' 2022-06-10T00:07:30,143 adding 'Mikado/tests/blast_input_tests/sanitised/blast/tsv/blast.tsv.gz' 2022-06-10T00:07:30,148 adding 'Mikado/tests/blast_input_tests/sanitised/blast/xml/blast.xml.gz' 2022-06-10T00:07:30,153 adding 'Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/tsv/blast.tsv.gz' 2022-06-10T00:07:30,158 adding 'Mikado/tests/blast_input_tests/sanitised/blast_parse_seqids/xml/blast.xml.gz' 2022-06-10T00:07:30,163 adding 'Mikado/tests/blast_input_tests/sanitised/diamond/daa/blast.daa' 2022-06-10T00:07:30,166 adding 'Mikado/tests/blast_input_tests/sanitised/diamond/tsv/blast.tsv.gz' 2022-06-10T00:07:30,170 adding 'Mikado/tests/blast_input_tests/sanitised/diamond/xml/blast.xml.gz' 2022-06-10T00:07:30,510 adding 'Mikado/tests/blast_input_tests/uniprot/uniprot.fasta' 2022-06-10T00:07:30,552 adding 'Mikado/tests/blast_input_tests/uniprot/uniprot.fasta.fai' 2022-06-10T00:07:30,559 adding 'Mikado/tests/blast_input_tests/uniprot/blast/tsv/blast.tsv.gz' 2022-06-10T00:07:30,565 adding 'Mikado/tests/blast_input_tests/uniprot/blast/xml/blast.xml.gz' 2022-06-10T00:07:30,570 adding 'Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/tsv/blast.tsv.gz' 2022-06-10T00:07:30,575 adding 'Mikado/tests/blast_input_tests/uniprot/blast_parse_seqids/xml/blast.xml.gz' 2022-06-10T00:07:30,580 adding 'Mikado/tests/blast_input_tests/uniprot/diamond/daa/blast.daa' 2022-06-10T00:07:30,584 adding 'Mikado/tests/blast_input_tests/uniprot/diamond/tsv/blast.tsv.gz' 2022-06-10T00:07:30,588 adding 'Mikado/tests/blast_input_tests/uniprot/diamond/xml/blast.xml.gz' 2022-06-10T00:07:30,592 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2022-06-10T00:07:30,594 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2022-06-10T00:07:30,601 adding 'Mikado/tests/test_external/abundance.h5' 2022-06-10T00:07:30,605 adding 'Mikado/tests/test_external/abundance.tsv' 2022-06-10T00:07:30,607 adding 'Mikado/tests/test_external/data.txt' 2022-06-10T00:07:30,697 adding 'Mikado/tests/test_external/mikado_prepared.fasta' 2022-06-10T00:07:30,704 adding 'Mikado/tests/test_external/mikado_prepared.fasta.fai' 2022-06-10T00:07:30,707 adding 'Mikado/tests/test_external/wrong_1.tsv' 2022-06-10T00:07:30,709 adding 'Mikado/tests/test_external/wrong_2.tsv' 2022-06-10T00:07:30,713 adding 'Mikado/tests/test_external_aphid/annotation_run1.metrics.testds.txt' 2022-06-10T00:07:30,717 adding 'Mikado/tests/test_external_aphid/aphid.scoring.yaml' 2022-06-10T00:07:30,721 adding 'Mikado/tests/test_external_aphid/mikado.configuration.testds.yaml' 2022-06-10T00:07:30,725 adding 'Mikado/tests/test_external_aphid/mikado_prepared.testds.fasta' 2022-06-10T00:07:30,727 adding 'Mikado/tests/test_external_aphid/mikado_prepared.testds.fasta.fai' 2022-06-10T00:07:30,731 adding 'Mikado/transcripts/__init__.py' 2022-06-10T00:07:30,736 adding 'Mikado/transcripts/pad.py' 2022-06-10T00:07:30,742 adding 'Mikado/transcripts/reference_gene.py' 2022-06-10T00:07:30,746 adding 'Mikado/transcripts/transcript.py' 2022-06-10T00:07:30,751 adding 'Mikado/transcripts/transcriptchecker.py' 2022-06-10T00:07:30,754 adding 'Mikado/transcripts/transcriptcomputer.py' 2022-06-10T00:07:30,758 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2022-06-10T00:07:30,765 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2022-06-10T00:07:30,775 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2022-06-10T00:07:30,781 adding 'Mikado/utilities/__init__.py' 2022-06-10T00:07:30,785 adding 'Mikado/utilities/dbutils.py' 2022-06-10T00:07:30,822 adding 'Mikado/utilities/f1.c' 2022-06-10T00:07:30,873 adding 'Mikado/utilities/f1.cpython-39-arm-linux-gnueabihf.so' 2022-06-10T00:07:30,877 adding 'Mikado/utilities/f1.pxd' 2022-06-10T00:07:30,880 adding 'Mikado/utilities/f1.pyx' 2022-06-10T00:07:30,882 adding 'Mikado/utilities/file_type.py' 2022-06-10T00:07:31,040 adding 'Mikado/utilities/intervaltree.cpp' 2022-06-10T00:07:31,623 adding 'Mikado/utilities/intervaltree.cpython-39-arm-linux-gnueabihf.so' 2022-06-10T00:07:31,648 adding 'Mikado/utilities/intervaltree.pxd' 2022-06-10T00:07:31,654 adding 'Mikado/utilities/intervaltree.pyx' 2022-06-10T00:07:31,658 adding 'Mikado/utilities/log_utils.py' 2022-06-10T00:07:31,660 adding 'Mikado/utilities/namespace.py' 2022-06-10T00:07:31,696 adding 'Mikado/utilities/overlap.c' 2022-06-10T00:07:31,766 adding 'Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so' 2022-06-10T00:07:31,771 adding 'Mikado/utilities/overlap.pxd' 2022-06-10T00:07:31,773 adding 'Mikado/utilities/overlap.pyx' 2022-06-10T00:07:31,779 adding 'Mikado-2.3.4.data/scripts/add_transcript_feature_to_gtf.py' 2022-06-10T00:07:31,782 adding 'Mikado-2.3.4.data/scripts/align_collect.py' 2022-06-10T00:07:31,784 adding 'Mikado-2.3.4.data/scripts/asm_collect.py' 2022-06-10T00:07:31,787 adding 'Mikado-2.3.4.data/scripts/bam2gtf.py' 2022-06-10T00:07:31,790 adding 'Mikado-2.3.4.data/scripts/calculate_distances.py' 2022-06-10T00:07:31,793 adding 'Mikado-2.3.4.data/scripts/class_run.py' 2022-06-10T00:07:31,796 adding 'Mikado-2.3.4.data/scripts/convert_cdna_match_gff3.py' 2022-06-10T00:07:31,800 adding 'Mikado-2.3.4.data/scripts/extract_promoter_regions.py' 2022-06-10T00:07:31,803 adding 'Mikado-2.3.4.data/scripts/extract_test_case.py' 2022-06-10T00:07:31,805 adding 'Mikado-2.3.4.data/scripts/getFastaFromIds.py' 2022-06-10T00:07:31,808 adding 'Mikado-2.3.4.data/scripts/gffjunc_to_bed12.py' 2022-06-10T00:07:31,810 adding 'Mikado-2.3.4.data/scripts/grep.py' 2022-06-10T00:07:31,813 adding 'Mikado-2.3.4.data/scripts/merge_junction_bed12.py' 2022-06-10T00:07:31,816 adding 'Mikado-2.3.4.data/scripts/remove_from_embl.py' 2022-06-10T00:07:31,818 adding 'Mikado-2.3.4.data/scripts/remove_utrs.py' 2022-06-10T00:07:31,821 adding 'Mikado-2.3.4.data/scripts/sanitize_blast_db.py' 2022-06-10T00:07:31,823 adding 'Mikado-2.3.4.data/scripts/split_fasta.py' 2022-06-10T00:07:31,826 adding 'Mikado-2.3.4.data/scripts/tease_maker_apart.py' 2022-06-10T00:07:31,829 adding 'Mikado-2.3.4.data/scripts/trim_long_introns.py' 2022-06-10T00:07:31,834 adding 'Mikado-2.3.4.dist-info/AUTHORS' 2022-06-10T00:07:31,837 adding 'Mikado-2.3.4.dist-info/LICENSE.txt' 2022-06-10T00:07:31,840 adding 'Mikado-2.3.4.dist-info/METADATA' 2022-06-10T00:07:31,841 adding 'Mikado-2.3.4.dist-info/WHEEL' 2022-06-10T00:07:31,843 adding 'Mikado-2.3.4.dist-info/entry_points.txt' 2022-06-10T00:07:31,845 adding 'Mikado-2.3.4.dist-info/top_level.txt' 2022-06-10T00:07:31,858 adding 'Mikado-2.3.4.dist-info/RECORD' 2022-06-10T00:07:32,650 removing build/bdist.linux-armv7l/wheel 2022-06-10T00:07:33,309 Building wheel for mikado (pyproject.toml): finished with status 'done' 2022-06-10T00:07:34,738 Created wheel for mikado: filename=Mikado-2.3.4-cp39-cp39-linux_armv7l.whl size=26389505 sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 2022-06-10T00:07:34,741 Stored in directory: /tmp/pip-ephem-wheel-cache-lcyckicv/wheels/72/97/1a/a331fd1f455b40dbce981e6dafa4410100cbdb5a8da97f1dcf 2022-06-10T00:07:34,854 Successfully built mikado 2022-06-10T00:07:36,516 Removed build tracker: '/tmp/pip-build-tracker-e7azk2h3'