2022-06-10T17:10:43,063 Created temporary directory: /tmp/pip-ephem-wheel-cache-p241kssd 2022-06-10T17:10:43,069 Created temporary directory: /tmp/pip-build-tracker-bflafp9_ 2022-06-10T17:10:43,070 Initialized build tracking at /tmp/pip-build-tracker-bflafp9_ 2022-06-10T17:10:43,070 Created build tracker: /tmp/pip-build-tracker-bflafp9_ 2022-06-10T17:10:43,070 Entered build tracker: /tmp/pip-build-tracker-bflafp9_ 2022-06-10T17:10:43,072 Created temporary directory: /tmp/pip-wheel-4a7hvt8i 2022-06-10T17:10:43,134 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-10T17:10:43,143 2 location(s) to search for versions of ngs-tools: 2022-06-10T17:10:43,143 * https://pypi.org/simple/ngs-tools/ 2022-06-10T17:10:43,143 * https://www.piwheels.org/simple/ngs-tools/ 2022-06-10T17:10:43,144 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/ 2022-06-10T17:10:43,145 Getting page https://pypi.org/simple/ngs-tools/ 2022-06-10T17:10:43,148 Found index url https://pypi.org/simple 2022-06-10T17:10:43,273 Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz#sha256=1655e20b854e794ff6a8f519ed9e892ef24b747ad94e01ae5aa1e2c1f6de6d5d (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2 2022-06-10T17:10:43,275 Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz#sha256=6462ce10eb5bf16c779815c467a6425f85736a7d716d876410efd75de01182fe (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0 2022-06-10T17:10:43,276 Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1 2022-06-10T17:10:43,278 Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2 2022-06-10T17:10:43,279 Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.3 2022-06-10T17:10:43,281 Found link https://files.pythonhosted.org/packages/cb/a0/bfbf48866af8f753bfacf0c089e4872351ecb6766706df7f94fa9a94a390/ngs-tools-1.3.0.tar.gz#sha256=2afdea16253b5000e7c7fc725819067a069ce9407fda76098fe34d37a2379e74 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.3.0 2022-06-10T17:10:43,282 Found link 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https://files.pythonhosted.org/packages/58/61/8b0644f718919404c3ee816166210bd2dce3465499179be0c730e14280ca/ngs-tools-1.8.0.tar.gz#sha256=2f214e36a5a6bfc6fe5a6d550442a8154f8f346a51a60e3746e5a5ede8ac25bd (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.8.0 2022-06-10T17:10:43,313 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngs-tools/ 2022-06-10T17:10:43,314 Getting page https://www.piwheels.org/simple/ngs-tools/ 2022-06-10T17:10:43,316 Found index url https://www.piwheels.org/simple 2022-06-10T17:10:43,549 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.7.3-py3-none-any.whl#sha256=dc35325ca7bddc751abc118bf75cfe4ea82876d0a96bdc9a70c15771faffbb6a (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,550 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.7.2-py3-none-any.whl#sha256=3076f67e20f8b80469c8ebe5b360be410f5231cb577d7d2a7d6e44ea584ce93d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,550 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.7.1-py3-none-any.whl#sha256=4c6e0d32b00bacb5667c956e7aa919aea4165a57fe7e5e39d8dd49b9d2c6b381 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,551 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.7.0-py3-none-any.whl#sha256=17380465682b7b34d5c38c54b4ec371fd561de9a0a7ea93d2ef52f94bf36d975 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,551 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.6.0-py3-none-any.whl#sha256=205d30a93ac25c0250dd105c88aa479c298e1687048d67254b11525b1edebbc7 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,552 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.14-py3-none-any.whl#sha256=d47a4be2c7d01a8f94b97f552906628db8f087e89d965a4639a539a55496bd88 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,553 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.13-py3-none-any.whl#sha256=71f0d58589b15c550a9115d38b512a726bb269b1ffed844df50b2ab5a1a31ccc (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,553 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.12-py3-none-any.whl#sha256=f035d3a272d93201ebd4dacad336077f4a4fe79748e96951e1e8f2439f0f5bde (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,554 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.11-py3-none-any.whl#sha256=fc2eef221cdbf60b63b74b217af521166ef46228db32de1ee3b068ec52460fad (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,554 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.10-py3-none-any.whl#sha256=354412a39fb0c2063ae5052bc7556cab650809f7589c98b48b9b1f40ea7b19c5 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,555 Skipping link: No binaries permitted for ngs-tools: 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https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.3-py3-none-any.whl#sha256=4f4644d9a23b5c3583abbe02a7decfe0d61158008c803a4cb5da80b1045a77f1 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,558 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.2-py3-none-any.whl#sha256=81e789f5fb1a0dff0fca747215fb93accb0486af4bfa6023d1db3e78e5be4b09 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,559 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.1-py3-none-any.whl#sha256=b454700426dd4dbbc802187a1c9e77e95c5a64a035529cda880c03c7471ad63b (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,559 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.0-py3-none-any.whl#sha256=66eed5f69a66f671c00406c785370cd15f237629e263838c17e1c1e9ebd35bf1 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,560 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.4.0-py3-none-any.whl#sha256=043cf74c3a420187c172fce50bbcb9a39baa4473efe511c4d4eaee1915041c43 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,561 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.3.0-py3-none-any.whl#sha256=637c180e653c8cc118967d5fffe8c5e5c72db0681df97b983f940d465d59e7a0 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,561 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.3-py3-none-any.whl#sha256=e4325ca6c2e61038f550ca9e5c513593ba4cdcafd0bb9e56dc9515e3734bde2d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,562 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.2-py3-none-any.whl#sha256=682da6e59007cd48bb3f8c93cb752483e21e6862c377732587e3f19646625c0d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,562 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.1-py3-none-any.whl#sha256=45796f1aff4813d9efa48859e8b01f0e85358e3f2fc682ffdd190956b3fcf1f2 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,563 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.0-py3-none-any.whl#sha256=60dbcc1c5132c03998766fda20b622a4dce037ed6d7f0a627358e1bad4f4372c (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,563 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.1.2-py3-none-any.whl#sha256=9b9bd1c9ee9db219e8ec6daf68374a570b1120218a4ef7d7a04ee415d18e05fd (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2022-06-10T17:10:43,564 Skipping link: not a file: https://www.piwheels.org/simple/ngs-tools/ 2022-06-10T17:10:43,564 Skipping link: not a file: https://pypi.org/simple/ngs-tools/ 2022-06-10T17:10:43,608 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates 2022-06-10T17:10:43,639 Collecting ngs-tools==1.8.0 2022-06-10T17:10:43,644 Created temporary directory: /tmp/pip-unpack-jew879wh 2022-06-10T17:10:45,283 Downloading ngs-tools-1.8.0.tar.gz (45.2 MB) 2022-06-10T17:11:00,763 Added ngs-tools==1.8.0 from https://files.pythonhosted.org/packages/58/61/8b0644f718919404c3ee816166210bd2dce3465499179be0c730e14280ca/ngs-tools-1.8.0.tar.gz#sha256=2f214e36a5a6bfc6fe5a6d550442a8154f8f346a51a60e3746e5a5ede8ac25bd to build tracker '/tmp/pip-build-tracker-bflafp9_' 2022-06-10T17:11:00,768 Running setup.py (path:/tmp/pip-wheel-4a7hvt8i/ngs-tools_4950125dddee42ecb3bf90ba6255b708/setup.py) egg_info for package ngs-tools 2022-06-10T17:11:00,770 Created temporary directory: /tmp/pip-pip-egg-info-r8z4u_6i 2022-06-10T17:11:00,770 Preparing metadata (setup.py): started 2022-06-10T17:11:00,772 Running command python setup.py egg_info 2022-06-10T17:11:10,065 running egg_info 2022-06-10T17:11:10,070 creating /tmp/pip-pip-egg-info-r8z4u_6i/ngs_tools.egg-info 2022-06-10T17:11:10,717 writing /tmp/pip-pip-egg-info-r8z4u_6i/ngs_tools.egg-info/PKG-INFO 2022-06-10T17:11:11,308 writing dependency_links to /tmp/pip-pip-egg-info-r8z4u_6i/ngs_tools.egg-info/dependency_links.txt 2022-06-10T17:11:14,290 writing requirements to /tmp/pip-pip-egg-info-r8z4u_6i/ngs_tools.egg-info/requires.txt 2022-06-10T17:11:14,883 writing top-level names to /tmp/pip-pip-egg-info-r8z4u_6i/ngs_tools.egg-info/top_level.txt 2022-06-10T17:11:14,885 writing manifest file '/tmp/pip-pip-egg-info-r8z4u_6i/ngs_tools.egg-info/SOURCES.txt' 2022-06-10T17:11:15,656 reading manifest file '/tmp/pip-pip-egg-info-r8z4u_6i/ngs_tools.egg-info/SOURCES.txt' 2022-06-10T17:11:15,659 reading manifest template 'MANIFEST.in' 2022-06-10T17:11:15,671 adding license file 'LICENSE' 2022-06-10T17:11:15,679 writing manifest file '/tmp/pip-pip-egg-info-r8z4u_6i/ngs_tools.egg-info/SOURCES.txt' 2022-06-10T17:11:15,896 Preparing metadata (setup.py): finished with status 'done' 2022-06-10T17:11:15,907 Source in /tmp/pip-wheel-4a7hvt8i/ngs-tools_4950125dddee42ecb3bf90ba6255b708 has version 1.8.0, which satisfies requirement ngs-tools==1.8.0 from https://files.pythonhosted.org/packages/58/61/8b0644f718919404c3ee816166210bd2dce3465499179be0c730e14280ca/ngs-tools-1.8.0.tar.gz#sha256=2f214e36a5a6bfc6fe5a6d550442a8154f8f346a51a60e3746e5a5ede8ac25bd 2022-06-10T17:11:15,909 Removed ngs-tools==1.8.0 from https://files.pythonhosted.org/packages/58/61/8b0644f718919404c3ee816166210bd2dce3465499179be0c730e14280ca/ngs-tools-1.8.0.tar.gz#sha256=2f214e36a5a6bfc6fe5a6d550442a8154f8f346a51a60e3746e5a5ede8ac25bd from build tracker '/tmp/pip-build-tracker-bflafp9_' 2022-06-10T17:11:15,922 Created temporary directory: /tmp/pip-unpack-gssalzup 2022-06-10T17:11:15,923 Building wheels for collected packages: ngs-tools 2022-06-10T17:11:15,933 Created temporary directory: /tmp/pip-wheel-rqoiqzaq 2022-06-10T17:11:15,934 Building wheel for ngs-tools (setup.py): started 2022-06-10T17:11:15,936 Destination directory: /tmp/pip-wheel-rqoiqzaq 2022-06-10T17:11:15,936 Running command python setup.py bdist_wheel 2022-06-10T17:11:24,708 running bdist_wheel 2022-06-10T17:11:24,858 running build 2022-06-10T17:11:24,858 running build_py 2022-06-10T17:11:25,501 creating build 2022-06-10T17:11:25,502 creating build/lib 2022-06-10T17:11:25,503 creating build/lib/ngs_tools 2022-06-10T17:11:25,506 copying ngs_tools/bam.py -> build/lib/ngs_tools 2022-06-10T17:11:25,510 copying ngs_tools/__init__.py -> build/lib/ngs_tools 2022-06-10T17:11:25,514 copying ngs_tools/logging.py -> build/lib/ngs_tools 2022-06-10T17:11:25,518 copying ngs_tools/sequence.py -> build/lib/ngs_tools 2022-06-10T17:11:25,524 copying ngs_tools/utils.py -> build/lib/ngs_tools 2022-06-10T17:11:25,530 copying ngs_tools/progress.py -> build/lib/ngs_tools 2022-06-10T17:11:25,535 creating build/lib/ngs_tools/binary 2022-06-10T17:11:25,536 copying ngs_tools/binary/Binary.py -> build/lib/ngs_tools/binary 2022-06-10T17:11:25,540 copying ngs_tools/binary/Argument.py -> build/lib/ngs_tools/binary 2022-06-10T17:11:25,543 copying ngs_tools/binary/ArgumentValidator.py -> build/lib/ngs_tools/binary 2022-06-10T17:11:25,547 copying ngs_tools/binary/__init__.py -> build/lib/ngs_tools/binary 2022-06-10T17:11:25,552 creating build/lib/ngs_tools/gtf 2022-06-10T17:11:25,553 copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf 2022-06-10T17:11:25,558 copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf 2022-06-10T17:11:25,562 copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf 2022-06-10T17:11:25,565 copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf 2022-06-10T17:11:25,569 copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf 2022-06-10T17:11:25,574 creating build/lib/ngs_tools/fasta 2022-06-10T17:11:25,576 copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta 2022-06-10T17:11:25,580 copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta 2022-06-10T17:11:25,583 copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta 2022-06-10T17:11:25,588 creating build/lib/ngs_tools/fastq 2022-06-10T17:11:25,590 copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq 2022-06-10T17:11:25,593 copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq 2022-06-10T17:11:25,597 copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq 2022-06-10T17:11:25,602 creating build/lib/ngs_tools/chemistry 2022-06-10T17:11:25,603 copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry 2022-06-10T17:11:25,607 copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry 2022-06-10T17:11:25,611 copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry 2022-06-10T17:11:25,615 copying ngs_tools/chemistry/MultimodalChemistry.py -> build/lib/ngs_tools/chemistry 2022-06-10T17:11:25,618 copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry 2022-06-10T17:11:25,621 running egg_info 2022-06-10T17:11:26,922 writing ngs_tools.egg-info/PKG-INFO 2022-06-10T17:11:27,513 writing dependency_links to ngs_tools.egg-info/dependency_links.txt 2022-06-10T17:11:30,455 writing requirements to ngs_tools.egg-info/requires.txt 2022-06-10T17:11:31,049 writing top-level names to ngs_tools.egg-info/top_level.txt 2022-06-10T17:11:31,111 reading manifest file 'ngs_tools.egg-info/SOURCES.txt' 2022-06-10T17:11:31,120 reading manifest template 'MANIFEST.in' 2022-06-10T17:11:31,132 adding license file 'LICENSE' 2022-06-10T17:11:31,141 writing manifest file 'ngs_tools.egg-info/SOURCES.txt' 2022-06-10T17:11:31,146 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-10T17:11:31,147 ############################ 2022-06-10T17:11:31,147 # Package would be ignored # 2022-06-10T17:11:31,147 ############################ 2022-06-10T17:11:31,148 Python recognizes 'ngs_tools.chemistry.whitelists' as an importable package, however it is 2022-06-10T17:11:31,148 included in the distribution as "data". 2022-06-10T17:11:31,148 This behavior is likely to change in future versions of setuptools (and 2022-06-10T17:11:31,149 therefore is considered deprecated). 2022-06-10T17:11:31,149 Please make sure that 'ngs_tools.chemistry.whitelists' is included as a package by using 2022-06-10T17:11:31,149 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-10T17:11:31,150 You can read more about "package discovery" and "data files" on setuptools 2022-06-10T17:11:31,150 documentation page. 2022-06-10T17:11:31,151 !! 2022-06-10T17:11:31,152 check.warn(importable) 2022-06-10T17:11:31,152 creating build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:31,153 copying ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:31,298 copying ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:31,978 copying ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:32,100 copying ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:32,195 copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:32,288 copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:32,408 copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:33,108 copying ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:33,291 copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:33,317 copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:33,322 copying ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2022-06-10T17:11:34,027 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-06-10T17:11:34,027 setuptools.SetuptoolsDeprecationWarning, 2022-06-10T17:11:34,665 installing to build/bdist.linux-armv7l/wheel 2022-06-10T17:11:34,666 running install 2022-06-10T17:11:34,726 running install_lib 2022-06-10T17:11:35,368 creating build/bdist.linux-armv7l 2022-06-10T17:11:35,369 creating build/bdist.linux-armv7l/wheel 2022-06-10T17:11:35,372 creating build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-10T17:11:35,375 creating build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-10T17:11:35,377 copying build/lib/ngs_tools/binary/Binary.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-10T17:11:35,380 copying build/lib/ngs_tools/binary/Argument.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-10T17:11:35,384 copying build/lib/ngs_tools/binary/ArgumentValidator.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-10T17:11:35,387 copying build/lib/ngs_tools/binary/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2022-06-10T17:11:35,391 creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-10T17:11:35,393 copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-10T17:11:35,397 copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-10T17:11:35,401 copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-10T17:11:35,404 copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-10T17:11:35,408 copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2022-06-10T17:11:35,412 copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-10T17:11:35,417 creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-06-10T17:11:35,418 copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-06-10T17:11:35,422 copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-06-10T17:11:35,425 copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2022-06-10T17:11:35,430 creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-06-10T17:11:35,431 copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-06-10T17:11:35,435 copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-06-10T17:11:35,439 copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2022-06-10T17:11:35,444 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-10T17:11:35,445 copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-10T17:11:35,450 copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-10T17:11:35,455 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:35,456 copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:35,460 copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:35,486 copying build/lib/ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:35,610 copying build/lib/ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:36,301 copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:36,390 copying build/lib/ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:36,538 copying build/lib/ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:36,630 copying build/lib/ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:36,741 copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:36,862 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:37,751 copying build/lib/ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2022-06-10T17:11:37,759 copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-10T17:11:37,766 copying build/lib/ngs_tools/chemistry/MultimodalChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-10T17:11:37,769 copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2022-06-10T17:11:37,772 copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-10T17:11:37,776 copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-10T17:11:37,780 copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-10T17:11:37,786 copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-10T17:11:37,791 copying build/lib/ngs_tools/progress.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2022-06-10T17:11:37,794 running install_egg_info 2022-06-10T17:11:38,456 Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.8.0-py3.7.egg-info 2022-06-10T17:11:38,480 running install_scripts 2022-06-10T17:11:38,642 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-06-10T17:11:38,651 creating build/bdist.linux-armv7l/wheel/ngs_tools-1.8.0.dist-info/WHEEL 2022-06-10T17:11:38,655 creating '/tmp/pip-wheel-rqoiqzaq/ngs_tools-1.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-06-10T17:11:38,660 adding 'ngs_tools/__init__.py' 2022-06-10T17:11:38,665 adding 'ngs_tools/bam.py' 2022-06-10T17:11:38,668 adding 'ngs_tools/logging.py' 2022-06-10T17:11:38,670 adding 'ngs_tools/progress.py' 2022-06-10T17:11:38,679 adding 'ngs_tools/sequence.py' 2022-06-10T17:11:38,687 adding 'ngs_tools/utils.py' 2022-06-10T17:11:38,690 adding 'ngs_tools/binary/Argument.py' 2022-06-10T17:11:38,693 adding 'ngs_tools/binary/ArgumentValidator.py' 2022-06-10T17:11:38,696 adding 'ngs_tools/binary/Binary.py' 2022-06-10T17:11:38,698 adding 'ngs_tools/binary/__init__.py' 2022-06-10T17:11:38,705 adding 'ngs_tools/chemistry/Chemistry.py' 2022-06-10T17:11:38,708 adding 'ngs_tools/chemistry/MultimodalChemistry.py' 2022-06-10T17:11:38,711 adding 'ngs_tools/chemistry/SingleCellChemistry.py' 2022-06-10T17:11:38,715 adding 'ngs_tools/chemistry/SpatialChemistry.py' 2022-06-10T17:11:38,718 adding 'ngs_tools/chemistry/__init__.py' 2022-06-10T17:11:39,546 adding 'ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz' 2022-06-10T17:11:45,136 adding 'ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz' 2022-06-10T17:11:46,251 adding 'ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz' 2022-06-10T17:11:46,996 adding 'ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz' 2022-06-10T17:11:47,674 adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz' 2022-06-10T17:11:48,387 adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz' 2022-06-10T17:11:54,024 adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz' 2022-06-10T17:11:55,495 adding 'ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz' 2022-06-10T17:11:55,734 adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz' 2022-06-10T17:11:55,747 adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz' 2022-06-10T17:11:55,755 adding 'ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz' 2022-06-10T17:11:55,759 adding 'ngs_tools/fasta/Fasta.py' 2022-06-10T17:11:55,763 adding 'ngs_tools/fasta/FastaEntry.py' 2022-06-10T17:11:55,766 adding 'ngs_tools/fasta/__init__.py' 2022-06-10T17:11:55,769 adding 'ngs_tools/fastq/Fastq.py' 2022-06-10T17:11:55,772 adding 'ngs_tools/fastq/Read.py' 2022-06-10T17:11:55,775 adding 'ngs_tools/fastq/__init__.py' 2022-06-10T17:11:55,779 adding 'ngs_tools/gtf/Gtf.py' 2022-06-10T17:11:55,781 adding 'ngs_tools/gtf/GtfEntry.py' 2022-06-10T17:11:55,784 adding 'ngs_tools/gtf/Segment.py' 2022-06-10T17:11:55,788 adding 'ngs_tools/gtf/SegmentCollection.py' 2022-06-10T17:11:55,791 adding 'ngs_tools/gtf/__init__.py' 2022-06-10T17:11:55,796 adding 'ngs_tools-1.8.0.dist-info/LICENSE' 2022-06-10T17:11:55,798 adding 'ngs_tools-1.8.0.dist-info/METADATA' 2022-06-10T17:11:55,800 adding 'ngs_tools-1.8.0.dist-info/WHEEL' 2022-06-10T17:11:55,801 adding 'ngs_tools-1.8.0.dist-info/top_level.txt' 2022-06-10T17:11:55,803 adding 'ngs_tools-1.8.0.dist-info/RECORD' 2022-06-10T17:11:56,997 removing build/bdist.linux-armv7l/wheel 2022-06-10T17:11:57,297 Building wheel for ngs-tools (setup.py): finished with status 'done' 2022-06-10T17:11:58,635 Created wheel for ngs-tools: filename=ngs_tools-1.8.0-py3-none-any.whl size=45157771 sha256=f828cf3d9195c4a97f2a661a8820fae3396ff09e122cbe862ceabcb012f286e6 2022-06-10T17:11:58,637 Stored in directory: /tmp/pip-ephem-wheel-cache-p241kssd/wheels/c1/1b/82/12c080a4f2b29f8c898e5745c87b6db4f01b24a7fe07b392cf 2022-06-10T17:11:58,712 Successfully built ngs-tools 2022-06-10T17:12:02,102 Removed build tracker: '/tmp/pip-build-tracker-bflafp9_'