2022-06-10T14:44:23,806 Created temporary directory: /tmp/pip-ephem-wheel-cache-towq2_p8
2022-06-10T14:44:23,812 Created temporary directory: /tmp/pip-build-tracker-i09y07q_
2022-06-10T14:44:23,812 Initialized build tracking at /tmp/pip-build-tracker-i09y07q_
2022-06-10T14:44:23,813 Created build tracker: /tmp/pip-build-tracker-i09y07q_
2022-06-10T14:44:23,813 Entered build tracker: /tmp/pip-build-tracker-i09y07q_
2022-06-10T14:44:23,814 Created temporary directory: /tmp/pip-wheel-c72808v7
2022-06-10T14:44:23,884 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-06-10T14:44:23,892 2 location(s) to search for versions of stereopy:
2022-06-10T14:44:23,892 * https://pypi.org/simple/stereopy/
2022-06-10T14:44:23,892 * https://www.piwheels.org/simple/stereopy/
2022-06-10T14:44:23,893 Fetching project page and analyzing links: https://pypi.org/simple/stereopy/
2022-06-10T14:44:23,894 Getting page https://pypi.org/simple/stereopy/
2022-06-10T14:44:23,898 Found index url https://pypi.org/simple
2022-06-10T14:44:24,087   Found link https://files.pythonhosted.org/packages/ba/e8/211af80a80404175bc1fd16031e19187a8f9f30bbbf83ef798b805bcbfa8/stereopy-0.1.tar.gz#sha256=618b0c895b568f307841c4b6e95448eb73cc56ad5df3b5aff48261dc8a4eb24b (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1
2022-06-10T14:44:24,089   Found link https://files.pythonhosted.org/packages/8f/b9/c6937d46ebf500f64995f52f08cedcb7da142757c370a71646baf6aff8d4/stereopy-0.1.9.tar.gz#sha256=bbc2f792b3615175ceb42333f8d781a4b15ec9d090980da088bbbc757d4cb154 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1.9
2022-06-10T14:44:24,091   Found link https://files.pythonhosted.org/packages/54/d5/44997684dbd629b1d1b6456fd36c6c8a469ef33fd42840b3610b3cc130ea/stereopy-0.2.0.tar.gz#sha256=17d9332696faf468d354a87d2ba78027fc3ebd023dcba9f1ebd0c9cff418e99e (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.2.0
2022-06-10T14:44:24,093   Found link https://files.pythonhosted.org/packages/16/63/f1b3f6cc029841596d2ab044092e8f272e68fb17590c72a6acb49fd9522f/stereopy-0.2.1.tar.gz#sha256=0a085a665f59cb2580b0f89333ca29a4d8cd27e26b9f945b683e5c52bb3a04d3 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.2.1
2022-06-10T14:44:24,094   Found link https://files.pythonhosted.org/packages/e4/e7/1941f9a5646ce28f1a3ca8112eb6b1c243a296e215de176a94a2e626c608/stereopy-0.2.1.1.tar.gz#sha256=c5a2e2d8cd98e0ebbd928642c4c85c8dfe223b6e26ccb85bd6675bf206353a32 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.1.1
2022-06-10T14:44:24,096   Found link https://files.pythonhosted.org/packages/6c/76/6e35ca9b3c9d09da60e3891d6c7bcfe973d1ad9630e8ab44098440f27f2c/stereopy-0.2.2.tar.gz#sha256=607bb675a3babd9a292e25ebc8025e8e8d376d59ab935e9daed404fbff36f801 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.2
2022-06-10T14:44:24,097   Found link https://files.pythonhosted.org/packages/fa/b5/2c2344ba53f0de81fc4a386fd8c507967fd63d3e44021535488467182c1c/stereopy-0.2.3.tar.gz#sha256=0cf8fc82e9e41f1d0257126f08145200b4111720baad700b0c16a2f07e3880c6 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.3
2022-06-10T14:44:24,098   Found link https://files.pythonhosted.org/packages/a9/5e/02cc76bd28abf7219cc546cda064f4ec21c92b90bb519e618d16c1b2197f/stereopy-0.2.4.tar.gz#sha256=29962ff71a199b99c3516562dbb798c0ed30ff2e077d5010cbdf8b6928bd17b0 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.4
2022-06-10T14:44:24,099   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/fc/7f20b2c01dc17f6d9b850d6a8c02ce9095bbad5365142bf7ff8ec88792d4/stereopy-0.3.0-py3.7.egg#sha256=2953ed5dd968e64eba0ab15d496c2a9015252ba029d8c8444ffbafb0d499071b (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-10T14:44:24,100   Found link https://files.pythonhosted.org/packages/35/8d/9cb2ea6c8b59d7714148028ff88e8cfe91ea9e3a10d4a8e7292f3aae309d/stereopy-0.3.0.tar.gz#sha256=3bdd839de4886ff5f7b8251a00b1a763a66a5473e2fe6ec34cc4d2a604132abb (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.3.0
2022-06-10T14:44:24,101 Fetching project page and analyzing links: https://www.piwheels.org/simple/stereopy/
2022-06-10T14:44:24,102 Getting page https://www.piwheels.org/simple/stereopy/
2022-06-10T14:44:24,104 Found index url https://www.piwheels.org/simple
2022-06-10T14:44:24,333   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.4-py3-none-any.whl#sha256=b78386b89c5ad578686208cee978abbc50c63408f79a3e13825cbb216c1f85e2 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-10T14:44:24,334   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.2-py3-none-any.whl#sha256=cf30abb8d0be555dc5a8b89f25c6cb1d9751b4020397a3eb52f8378549ae6fd9 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-10T14:44:24,335   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.1.1-py3-none-any.whl#sha256=10f5984a2c3aa0f26dd16a87369bebc8274256dd4a44a641f50fa40e72e64d64 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-10T14:44:24,335   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.1-py3-none-any.whl#sha256=cf71efeac7cafa9bff7c3a22c48c80c49cdd789556030cddb0f42576b578642b (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-06-10T14:44:24,336   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.0-py3-none-any.whl#sha256=ae14c63aea986a54218b9fed56b879d0a97082db8a4f6fadc91a319e0ce90c8f (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-06-10T14:44:24,336   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1.9-py3-none-any.whl#sha256=9786a21d45274a8ed729134a2a5fa7379701020aa314d693fc95f4cca2a91e75 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-06-10T14:44:24,337   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1-py3-none-any.whl#sha256=1436faf8dcf176e53adce94e2bc87792de7d4cdaaed317c408128bc9daa5e231 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-06-10T14:44:24,337 Skipping link: not a file: https://www.piwheels.org/simple/stereopy/
2022-06-10T14:44:24,338 Skipping link: not a file: https://pypi.org/simple/stereopy/
2022-06-10T14:44:24,378 Given no hashes to check 1 links for project 'stereopy': discarding no candidates
2022-06-10T14:44:24,410 Collecting stereopy==0.3.0
2022-06-10T14:44:24,415   Created temporary directory: /tmp/pip-unpack-w94ktden
2022-06-10T14:44:24,512   Downloading stereopy-0.3.0.tar.gz (25.8 MB)
2022-06-10T14:44:37,321   Added stereopy==0.3.0 from https://files.pythonhosted.org/packages/35/8d/9cb2ea6c8b59d7714148028ff88e8cfe91ea9e3a10d4a8e7292f3aae309d/stereopy-0.3.0.tar.gz#sha256=3bdd839de4886ff5f7b8251a00b1a763a66a5473e2fe6ec34cc4d2a604132abb to build tracker '/tmp/pip-build-tracker-i09y07q_'
2022-06-10T14:44:37,324   Running setup.py (path:/tmp/pip-wheel-c72808v7/stereopy_9672a410c38149858ce1ee9dcb065951/setup.py) egg_info for package stereopy
2022-06-10T14:44:37,325   Created temporary directory: /tmp/pip-pip-egg-info-p_mbjo3a
2022-06-10T14:44:37,326   Preparing metadata (setup.py): started
2022-06-10T14:44:37,328   Running command python setup.py egg_info
2022-06-10T20:51:45,974   running egg_info
2022-06-10T20:51:45,977   creating /tmp/pip-pip-egg-info-p_mbjo3a/stereopy.egg-info
2022-06-10T20:51:46,780   writing /tmp/pip-pip-egg-info-p_mbjo3a/stereopy.egg-info/PKG-INFO
2022-06-10T20:51:47,376   writing dependency_links to /tmp/pip-pip-egg-info-p_mbjo3a/stereopy.egg-info/dependency_links.txt
2022-06-10T20:51:50,346   writing requirements to /tmp/pip-pip-egg-info-p_mbjo3a/stereopy.egg-info/requires.txt
2022-06-10T20:51:50,942   writing top-level names to /tmp/pip-pip-egg-info-p_mbjo3a/stereopy.egg-info/top_level.txt
2022-06-10T20:51:50,944   writing manifest file '/tmp/pip-pip-egg-info-p_mbjo3a/stereopy.egg-info/SOURCES.txt'
2022-06-10T20:51:52,289   /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
2022-06-10T20:51:52,290     SetuptoolsDeprecationWarning,
2022-06-10T20:51:52,290   listing git files failed - pretending there aren't any
2022-06-10T20:51:52,409   reading manifest file '/tmp/pip-pip-egg-info-p_mbjo3a/stereopy.egg-info/SOURCES.txt'
2022-06-10T20:51:52,412   adding license file 'LICENSE'
2022-06-10T20:51:52,426   writing manifest file '/tmp/pip-pip-egg-info-p_mbjo3a/stereopy.egg-info/SOURCES.txt'
2022-06-10T20:51:52,703   Preparing metadata (setup.py): finished with status 'done'
2022-06-10T20:51:52,715   Source in /tmp/pip-wheel-c72808v7/stereopy_9672a410c38149858ce1ee9dcb065951 has version 0.3.0, which satisfies requirement stereopy==0.3.0 from https://files.pythonhosted.org/packages/35/8d/9cb2ea6c8b59d7714148028ff88e8cfe91ea9e3a10d4a8e7292f3aae309d/stereopy-0.3.0.tar.gz#sha256=3bdd839de4886ff5f7b8251a00b1a763a66a5473e2fe6ec34cc4d2a604132abb
2022-06-10T20:51:52,717   Removed stereopy==0.3.0 from https://files.pythonhosted.org/packages/35/8d/9cb2ea6c8b59d7714148028ff88e8cfe91ea9e3a10d4a8e7292f3aae309d/stereopy-0.3.0.tar.gz#sha256=3bdd839de4886ff5f7b8251a00b1a763a66a5473e2fe6ec34cc4d2a604132abb from build tracker '/tmp/pip-build-tracker-i09y07q_'
2022-06-10T20:51:52,731 Created temporary directory: /tmp/pip-unpack-5f_v4p8z
2022-06-10T20:51:52,732 Building wheels for collected packages: stereopy
2022-06-10T20:51:52,741   Created temporary directory: /tmp/pip-wheel-49kmuxtm
2022-06-10T20:51:52,742   Building wheel for stereopy (setup.py): started
2022-06-10T20:51:52,744   Destination directory: /tmp/pip-wheel-49kmuxtm
2022-06-10T20:51:52,744   Running command python setup.py bdist_wheel
2022-06-10T20:51:55,745   /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
2022-06-10T20:51:55,746     SetuptoolsDeprecationWarning,
2022-06-10T20:52:14,346   running bdist_wheel
2022-06-10T20:52:14,968   running build
2022-06-10T20:52:14,969   running build_py
2022-06-10T20:52:15,765   creating build
2022-06-10T20:52:15,765   creating build/lib
2022-06-10T20:52:15,766   creating build/lib/stereo
2022-06-10T20:52:15,769   copying stereo/config.py -> build/lib/stereo
2022-06-10T20:52:15,782   copying stereo/__init__.py -> build/lib/stereo
2022-06-10T20:52:15,794   copying stereo/log_manager.py -> build/lib/stereo
2022-06-10T20:52:15,809   creating build/lib/stereo/core
2022-06-10T20:52:15,811   copying stereo/core/stereo_result.py -> build/lib/stereo/core
2022-06-10T20:52:15,815   copying stereo/core/__init__.py -> build/lib/stereo/core
2022-06-10T20:52:15,819   copying stereo/core/data.py -> build/lib/stereo/core
2022-06-10T20:52:15,823   copying stereo/core/cell.py -> build/lib/stereo/core
2022-06-10T20:52:15,827   copying stereo/core/tool_base.py -> build/lib/stereo/core
2022-06-10T20:52:15,831   copying stereo/core/stereo_exp_data.py -> build/lib/stereo/core
2022-06-10T20:52:15,837   copying stereo/core/gene.py -> build/lib/stereo/core
2022-06-10T20:52:15,841   copying stereo/core/st_pipeline.py -> build/lib/stereo/core
2022-06-10T20:52:15,850   creating build/lib/stereo/io
2022-06-10T20:52:15,851   copying stereo/io/__init__.py -> build/lib/stereo/io
2022-06-10T20:52:15,856   copying stereo/io/h5ad.py -> build/lib/stereo/io
2022-06-10T20:52:15,861   copying stereo/io/gef.py -> build/lib/stereo/io
2022-06-10T20:52:15,866   copying stereo/io/reader.py -> build/lib/stereo/io
2022-06-10T20:52:15,873   copying stereo/io/writer.py -> build/lib/stereo/io
2022-06-10T20:52:15,880   creating build/lib/stereo/plots
2022-06-10T20:52:15,881   copying stereo/plots/__init__.py -> build/lib/stereo/plots
2022-06-10T20:52:15,885   copying stereo/plots/violin.py -> build/lib/stereo/plots
2022-06-10T20:52:15,889   copying stereo/plots/plot_collection.py -> build/lib/stereo/plots
2022-06-10T20:52:15,895   copying stereo/plots/marker_genes.py -> build/lib/stereo/plots
2022-06-10T20:52:15,899   copying stereo/plots/scatter.py -> build/lib/stereo/plots
2022-06-10T20:52:15,906   creating build/lib/stereo/utils
2022-06-10T20:52:15,908   copying stereo/utils/correlation.py -> build/lib/stereo/utils
2022-06-10T20:52:15,912   copying stereo/utils/data_helper.py -> build/lib/stereo/utils
2022-06-10T20:52:15,916   copying stereo/utils/spmatrix_helper.py -> build/lib/stereo/utils
2022-06-10T20:52:15,919   copying stereo/utils/__init__.py -> build/lib/stereo/utils
2022-06-10T20:52:15,923   copying stereo/utils/hvg_utils.py -> build/lib/stereo/utils
2022-06-10T20:52:15,931   creating build/lib/stereo/algorithm
2022-06-10T20:52:15,932   copying stereo/algorithm/mannwhitneyu.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,938   copying stereo/algorithm/highly_variable_genes.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,943   copying stereo/algorithm/phenograph.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,948   copying stereo/algorithm/cell_correction.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,953   copying stereo/algorithm/__init__.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,957   copying stereo/algorithm/dim_reduce.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,961   copying stereo/algorithm/scenic.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,966   copying stereo/algorithm/spatial_hotspot.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,971   copying stereo/algorithm/statistics.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,975   copying stereo/algorithm/normalization.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,980   copying stereo/algorithm/scale.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,985   copying stereo/algorithm/neighbors.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,991   copying stereo/algorithm/umap.py -> build/lib/stereo/algorithm
2022-06-10T20:52:15,996   copying stereo/algorithm/leiden.py -> build/lib/stereo/algorithm
2022-06-10T20:52:16,001   copying stereo/algorithm/spatial_pattern_score.py -> build/lib/stereo/algorithm
2022-06-10T20:52:16,006   copying stereo/algorithm/_louvain.py -> build/lib/stereo/algorithm
2022-06-10T20:52:16,014   creating build/lib/stereo/tools
2022-06-10T20:52:16,017   copying stereo/tools/cluster.py -> build/lib/stereo/tools
2022-06-10T20:52:16,022   copying stereo/tools/cell_segment.py -> build/lib/stereo/tools
2022-06-10T20:52:16,027   copying stereo/tools/highly_variable_genes.py -> build/lib/stereo/tools
2022-06-10T20:52:16,033   copying stereo/tools/cell_type_anno.py -> build/lib/stereo/tools
2022-06-10T20:52:16,039   copying stereo/tools/cell_correct.py -> build/lib/stereo/tools
2022-06-10T20:52:16,044   copying stereo/tools/__init__.py -> build/lib/stereo/tools
2022-06-10T20:52:16,048   copying stereo/tools/dim_reduce.py -> build/lib/stereo/tools
2022-06-10T20:52:16,053   copying stereo/tools/find_markers.py -> build/lib/stereo/tools
2022-06-10T20:52:16,057   copying stereo/tools/spatial_lag.py -> build/lib/stereo/tools
2022-06-10T20:52:16,062   copying stereo/tools/clustering.py -> build/lib/stereo/tools
2022-06-10T20:52:16,067   copying stereo/tools/cell_cut.py -> build/lib/stereo/tools
2022-06-10T20:52:16,071   copying stereo/tools/spatial_pattern_score.py -> build/lib/stereo/tools
2022-06-10T20:52:16,076   creating build/lib/stereo/preprocess
2022-06-10T20:52:16,077   copying stereo/preprocess/filter.py -> build/lib/stereo/preprocess
2022-06-10T20:52:16,082   copying stereo/preprocess/qc.py -> build/lib/stereo/preprocess
2022-06-10T20:52:16,086   copying stereo/preprocess/normalize.py -> build/lib/stereo/preprocess
2022-06-10T20:52:16,090   copying stereo/preprocess/__init__.py -> build/lib/stereo/preprocess
2022-06-10T20:52:16,093   copying stereo/preprocess/sc_transform.py -> build/lib/stereo/preprocess
2022-06-10T20:52:16,098   creating build/lib/stereo/image
2022-06-10T20:52:16,100   copying stereo/image/__init__.py -> build/lib/stereo/image
2022-06-10T20:52:16,104   copying stereo/image/pyramid.py -> build/lib/stereo/image
2022-06-10T20:52:16,110   creating build/lib/stereo/plots/interact_plot
2022-06-10T20:52:16,111   copying stereo/plots/interact_plot/poly_selection.py -> build/lib/stereo/plots/interact_plot
2022-06-10T20:52:16,116   copying stereo/plots/interact_plot/__init__.py -> build/lib/stereo/plots/interact_plot
2022-06-10T20:52:16,120   copying stereo/plots/interact_plot/spatial_cluster.py -> build/lib/stereo/plots/interact_plot
2022-06-10T20:52:16,124   copying stereo/plots/interact_plot/interactive_scatter.py -> build/lib/stereo/plots/interact_plot
2022-06-10T20:52:16,130   creating build/lib/stereo/plots/_plot_basic
2022-06-10T20:52:16,131   copying stereo/plots/_plot_basic/heatmap_plt.py -> build/lib/stereo/plots/_plot_basic
2022-06-10T20:52:16,136   copying stereo/plots/_plot_basic/__init__.py -> build/lib/stereo/plots/_plot_basic
2022-06-10T20:52:16,140   copying stereo/plots/_plot_basic/get_stereo_data.py -> build/lib/stereo/plots/_plot_basic
2022-06-10T20:52:16,145   creating build/lib/stereo/algorithm/pysctransform
2022-06-10T20:52:16,147   copying stereo/algorithm/pysctransform/fit.py -> build/lib/stereo/algorithm/pysctransform
2022-06-10T20:52:16,152   copying stereo/algorithm/pysctransform/plotting.py -> build/lib/stereo/algorithm/pysctransform
2022-06-10T20:52:16,157   copying stereo/algorithm/pysctransform/__init__.py -> build/lib/stereo/algorithm/pysctransform
2022-06-10T20:52:16,161   copying stereo/algorithm/pysctransform/jax_bfgs.py -> build/lib/stereo/algorithm/pysctransform
2022-06-10T20:52:16,166   copying stereo/algorithm/pysctransform/r_bw.py -> build/lib/stereo/algorithm/pysctransform
2022-06-10T20:52:16,170   copying stereo/algorithm/pysctransform/fit_glmgp.py -> build/lib/stereo/algorithm/pysctransform
2022-06-10T20:52:16,174   copying stereo/algorithm/pysctransform/pysctransform.py -> build/lib/stereo/algorithm/pysctransform
2022-06-10T20:52:16,182   creating build/lib/stereo/image/tissue_cut
2022-06-10T20:52:16,183   copying stereo/image/tissue_cut/__init__.py -> build/lib/stereo/image/tissue_cut
2022-06-10T20:52:16,187   copying stereo/image/tissue_cut/tissue_seg.py -> build/lib/stereo/image/tissue_cut
2022-06-10T20:52:16,192   creating build/lib/stereo/image/segmentation
2022-06-10T20:52:16,193   copying stereo/image/segmentation/__init__.py -> build/lib/stereo/image/segmentation
2022-06-10T20:52:16,197   copying stereo/image/segmentation/segment.py -> build/lib/stereo/image/segmentation
2022-06-10T20:52:16,208   creating build/lib/stereo/image/segmentation_deepcell
2022-06-10T20:52:16,210   copying stereo/image/segmentation_deepcell/__init__.py -> build/lib/stereo/image/segmentation_deepcell
2022-06-10T20:52:16,214   copying stereo/image/segmentation_deepcell/segment.py -> build/lib/stereo/image/segmentation_deepcell
2022-06-10T20:52:16,219   creating build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:16,221   copying stereo/image/tissue_cut/tissueCut_utils/tissue_seg_pipeline.py -> build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:16,227   copying stereo/image/tissue_cut/tissueCut_utils/tissue_seg_utils.py -> build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:16,231   copying stereo/image/tissue_cut/tissueCut_utils/__init__.py -> build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:16,234   copying stereo/image/tissue_cut/tissueCut_utils/tissue_seg_net.py -> build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:16,241   creating build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,243   copying stereo/image/segmentation/seg_utils/grade.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,248   copying stereo/image/segmentation/seg_utils/cell_infer.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,254   copying stereo/image/segmentation/seg_utils/__init__.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,257   copying stereo/image/segmentation/seg_utils/image.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,261   copying stereo/image/segmentation/seg_utils/find_maxima.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,266   copying stereo/image/segmentation/seg_utils/resnet_unet.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,271   copying stereo/image/segmentation/seg_utils/dataset.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,275   copying stereo/image/segmentation/seg_utils/utils.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,281   copying stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-10T20:52:16,288   creating build/lib/stereo/image/segmentation/seg_utils/models
2022-06-10T20:52:16,290   copying stereo/image/segmentation/seg_utils/models/SE_weight_module.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-06-10T20:52:16,294   copying stereo/image/segmentation/seg_utils/models/__init__.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-06-10T20:52:16,297   copying stereo/image/segmentation/seg_utils/models/epsanet.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-06-10T20:52:16,305   creating build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,307   copying stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,311   copying stereo/image/segmentation_deepcell/seg_utils/grade.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,316   copying stereo/image/segmentation_deepcell/seg_utils/cell_infer.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,321   copying stereo/image/segmentation_deepcell/seg_utils/__init__.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,324   copying stereo/image/segmentation_deepcell/seg_utils/image.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,327   copying stereo/image/segmentation_deepcell/seg_utils/find_maxima.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,333   copying stereo/image/segmentation_deepcell/seg_utils/utils.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,339   copying stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,343   copying stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:16,347   running egg_info
2022-06-10T20:52:17,944   writing stereopy.egg-info/PKG-INFO
2022-06-10T20:52:18,532   writing dependency_links to stereopy.egg-info/dependency_links.txt
2022-06-10T20:52:21,475   writing requirements to stereopy.egg-info/requires.txt
2022-06-10T20:52:22,065   writing top-level names to stereopy.egg-info/top_level.txt
2022-06-10T20:52:22,363   listing git files failed - pretending there aren't any
2022-06-10T20:52:22,477   reading manifest file 'stereopy.egg-info/SOURCES.txt'
2022-06-10T20:52:22,522   adding license file 'LICENSE'
2022-06-10T20:52:22,544   writing manifest file 'stereopy.egg-info/SOURCES.txt'
2022-06-10T20:52:23,393   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-06-10T20:52:23,394     setuptools.SetuptoolsDeprecationWarning,
2022-06-10T20:52:24,192   installing to build/bdist.linux-armv7l/wheel
2022-06-10T20:52:24,193   running install
2022-06-10T20:52:24,253   running install_lib
2022-06-10T20:52:25,058   creating build/bdist.linux-armv7l
2022-06-10T20:52:25,059   creating build/bdist.linux-armv7l/wheel
2022-06-10T20:52:25,062   creating build/bdist.linux-armv7l/wheel/stereo
2022-06-10T20:52:25,064   copying build/lib/stereo/config.py -> build/bdist.linux-armv7l/wheel/stereo
2022-06-10T20:52:25,070   creating build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,071   copying build/lib/stereo/core/stereo_result.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,075   copying build/lib/stereo/core/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,079   copying build/lib/stereo/core/data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,082   copying build/lib/stereo/core/cell.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,086   copying build/lib/stereo/core/tool_base.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,090   copying build/lib/stereo/core/stereo_exp_data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,094   copying build/lib/stereo/core/gene.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,098   copying build/lib/stereo/core/st_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-10T20:52:25,105   creating build/bdist.linux-armv7l/wheel/stereo/io
2022-06-10T20:52:25,106   copying build/lib/stereo/io/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-10T20:52:25,110   copying build/lib/stereo/io/h5ad.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-10T20:52:25,115   copying build/lib/stereo/io/gef.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-10T20:52:25,119   copying build/lib/stereo/io/reader.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-10T20:52:25,124   copying build/lib/stereo/io/writer.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-10T20:52:25,129   creating build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-10T20:52:25,131   copying build/lib/stereo/plots/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-10T20:52:25,134   copying build/lib/stereo/plots/violin.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-10T20:52:25,138   copying build/lib/stereo/plots/plot_collection.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-10T20:52:25,142   copying build/lib/stereo/plots/marker_genes.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-10T20:52:25,148   creating build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-10T20:52:25,149   copying build/lib/stereo/plots/interact_plot/poly_selection.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-10T20:52:25,153   copying build/lib/stereo/plots/interact_plot/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-10T20:52:25,157   copying build/lib/stereo/plots/interact_plot/spatial_cluster.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-10T20:52:25,160   copying build/lib/stereo/plots/interact_plot/interactive_scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-10T20:52:25,164   copying build/lib/stereo/plots/scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-10T20:52:25,169   creating build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-06-10T20:52:25,170   copying build/lib/stereo/plots/_plot_basic/heatmap_plt.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-06-10T20:52:25,175   copying build/lib/stereo/plots/_plot_basic/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-06-10T20:52:25,178   copying build/lib/stereo/plots/_plot_basic/get_stereo_data.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-06-10T20:52:25,181   copying build/lib/stereo/__init__.py -> build/bdist.linux-armv7l/wheel/stereo
2022-06-10T20:52:25,184   copying build/lib/stereo/log_manager.py -> build/bdist.linux-armv7l/wheel/stereo
2022-06-10T20:52:25,188   creating build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-10T20:52:25,190   copying build/lib/stereo/utils/correlation.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-10T20:52:25,193   copying build/lib/stereo/utils/data_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-10T20:52:25,197   copying build/lib/stereo/utils/spmatrix_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-10T20:52:25,200   copying build/lib/stereo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-10T20:52:25,203   copying build/lib/stereo/utils/hvg_utils.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-10T20:52:25,208   creating build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,210   copying build/lib/stereo/algorithm/mannwhitneyu.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,214   copying build/lib/stereo/algorithm/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,218   copying build/lib/stereo/algorithm/phenograph.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,222   copying build/lib/stereo/algorithm/cell_correction.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,226   copying build/lib/stereo/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,230   creating build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-10T20:52:25,231   copying build/lib/stereo/algorithm/pysctransform/fit.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-10T20:52:25,235   copying build/lib/stereo/algorithm/pysctransform/plotting.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-10T20:52:25,239   copying build/lib/stereo/algorithm/pysctransform/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-10T20:52:25,243   copying build/lib/stereo/algorithm/pysctransform/jax_bfgs.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-10T20:52:25,247   copying build/lib/stereo/algorithm/pysctransform/r_bw.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-10T20:52:25,251   copying build/lib/stereo/algorithm/pysctransform/fit_glmgp.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-10T20:52:25,255   copying build/lib/stereo/algorithm/pysctransform/pysctransform.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-10T20:52:25,261   copying build/lib/stereo/algorithm/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,265   copying build/lib/stereo/algorithm/scenic.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,269   copying build/lib/stereo/algorithm/spatial_hotspot.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,273   copying build/lib/stereo/algorithm/statistics.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,277   copying build/lib/stereo/algorithm/normalization.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,280   copying build/lib/stereo/algorithm/scale.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,283   copying build/lib/stereo/algorithm/neighbors.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,288   copying build/lib/stereo/algorithm/umap.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,291   copying build/lib/stereo/algorithm/leiden.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,295   copying build/lib/stereo/algorithm/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,298   copying build/lib/stereo/algorithm/_louvain.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-10T20:52:25,303   creating build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,305   copying build/lib/stereo/tools/cluster.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,309   copying build/lib/stereo/tools/cell_segment.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,312   copying build/lib/stereo/tools/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,316   copying build/lib/stereo/tools/cell_type_anno.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,321   copying build/lib/stereo/tools/cell_correct.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,325   copying build/lib/stereo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,328   copying build/lib/stereo/tools/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,331   copying build/lib/stereo/tools/find_markers.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,336   copying build/lib/stereo/tools/spatial_lag.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,339   copying build/lib/stereo/tools/clustering.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,343   copying build/lib/stereo/tools/cell_cut.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,347   copying build/lib/stereo/tools/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-10T20:52:25,351   creating build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-10T20:52:25,352   copying build/lib/stereo/preprocess/filter.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-10T20:52:25,356   copying build/lib/stereo/preprocess/qc.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-10T20:52:25,360   copying build/lib/stereo/preprocess/normalize.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-10T20:52:25,363   copying build/lib/stereo/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-10T20:52:25,366   copying build/lib/stereo/preprocess/sc_transform.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-10T20:52:25,371   creating build/bdist.linux-armv7l/wheel/stereo/image
2022-06-10T20:52:25,373   creating build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-06-10T20:52:25,375   copying build/lib/stereo/image/tissue_cut/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-06-10T20:52:25,378   copying build/lib/stereo/image/tissue_cut/tissue_seg.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-06-10T20:52:25,382   creating build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:25,384   copying build/lib/stereo/image/tissue_cut/tissueCut_utils/tissue_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:25,388   copying build/lib/stereo/image/tissue_cut/tissueCut_utils/tissue_seg_utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:25,392   copying build/lib/stereo/image/tissue_cut/tissueCut_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:25,395   copying build/lib/stereo/image/tissue_cut/tissueCut_utils/tissue_seg_net.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-10T20:52:25,399   copying build/lib/stereo/image/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image
2022-06-10T20:52:25,402   copying build/lib/stereo/image/pyramid.py -> build/bdist.linux-armv7l/wheel/stereo/image
2022-06-10T20:52:25,407   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-06-10T20:52:25,410   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,411   copying build/lib/stereo/image/segmentation/seg_utils/grade.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,415   copying build/lib/stereo/image/segmentation/seg_utils/cell_infer.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,420   copying build/lib/stereo/image/segmentation/seg_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,423   copying build/lib/stereo/image/segmentation/seg_utils/image.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,426   copying build/lib/stereo/image/segmentation/seg_utils/find_maxima.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,430   copying build/lib/stereo/image/segmentation/seg_utils/resnet_unet.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,434   copying build/lib/stereo/image/segmentation/seg_utils/dataset.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,438   copying build/lib/stereo/image/segmentation/seg_utils/utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,443   copying build/lib/stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-10T20:52:25,448   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-06-10T20:52:25,450   copying build/lib/stereo/image/segmentation/seg_utils/models/SE_weight_module.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-06-10T20:52:25,454   copying build/lib/stereo/image/segmentation/seg_utils/models/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-06-10T20:52:25,458   copying build/lib/stereo/image/segmentation/seg_utils/models/epsanet.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-06-10T20:52:25,464   copying build/lib/stereo/image/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-06-10T20:52:25,468   copying build/lib/stereo/image/segmentation/segment.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-06-10T20:52:25,473   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-06-10T20:52:25,476   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,478   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,482   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/grade.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,487   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/cell_infer.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,492   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,496   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/image.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,500   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/find_maxima.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,504   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,509   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,512   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-10T20:52:25,517   copying build/lib/stereo/image/segmentation_deepcell/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-06-10T20:52:25,520   copying build/lib/stereo/image/segmentation_deepcell/segment.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-06-10T20:52:25,523   running install_egg_info
2022-06-10T20:52:26,330   Copying stereopy.egg-info to build/bdist.linux-armv7l/wheel/stereopy-0.3.0-py3.7.egg-info
2022-06-10T20:52:26,351   running install_scripts
2022-06-10T20:52:26,783   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-06-10T20:52:26,795   creating build/bdist.linux-armv7l/wheel/stereopy-0.3.0.dist-info/WHEEL
2022-06-10T20:52:26,800   creating '/tmp/pip-wheel-49kmuxtm/stereopy-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-06-10T20:52:26,804   adding 'stereo/__init__.py'
2022-06-10T20:52:26,807   adding 'stereo/config.py'
2022-06-10T20:52:26,810   adding 'stereo/log_manager.py'
2022-06-10T20:52:26,814   adding 'stereo/algorithm/__init__.py'
2022-06-10T20:52:26,817   adding 'stereo/algorithm/_louvain.py'
2022-06-10T20:52:26,821   adding 'stereo/algorithm/cell_correction.py'
2022-06-10T20:52:26,823   adding 'stereo/algorithm/dim_reduce.py'
2022-06-10T20:52:26,827   adding 'stereo/algorithm/highly_variable_genes.py'
2022-06-10T20:52:26,830   adding 'stereo/algorithm/leiden.py'
2022-06-10T20:52:26,834   adding 'stereo/algorithm/mannwhitneyu.py'
2022-06-10T20:52:26,839   adding 'stereo/algorithm/neighbors.py'
2022-06-10T20:52:26,842   adding 'stereo/algorithm/normalization.py'
2022-06-10T20:52:26,844   adding 'stereo/algorithm/phenograph.py'
2022-06-10T20:52:26,847   adding 'stereo/algorithm/scale.py'
2022-06-10T20:52:26,850   adding 'stereo/algorithm/scenic.py'
2022-06-10T20:52:26,852   adding 'stereo/algorithm/spatial_hotspot.py'
2022-06-10T20:52:26,855   adding 'stereo/algorithm/spatial_pattern_score.py'
2022-06-10T20:52:26,858   adding 'stereo/algorithm/statistics.py'
2022-06-10T20:52:26,861   adding 'stereo/algorithm/umap.py'
2022-06-10T20:52:26,864   adding 'stereo/algorithm/pysctransform/__init__.py'
2022-06-10T20:52:26,867   adding 'stereo/algorithm/pysctransform/fit.py'
2022-06-10T20:52:26,869   adding 'stereo/algorithm/pysctransform/fit_glmgp.py'
2022-06-10T20:52:26,872   adding 'stereo/algorithm/pysctransform/jax_bfgs.py'
2022-06-10T20:52:26,875   adding 'stereo/algorithm/pysctransform/plotting.py'
2022-06-10T20:52:26,884   adding 'stereo/algorithm/pysctransform/pysctransform.py'
2022-06-10T20:52:26,888   adding 'stereo/algorithm/pysctransform/r_bw.py'
2022-06-10T20:52:26,891   adding 'stereo/core/__init__.py'
2022-06-10T20:52:26,894   adding 'stereo/core/cell.py'
2022-06-10T20:52:26,897   adding 'stereo/core/data.py'
2022-06-10T20:52:26,899   adding 'stereo/core/gene.py'
2022-06-10T20:52:26,908   adding 'stereo/core/st_pipeline.py'
2022-06-10T20:52:26,913   adding 'stereo/core/stereo_exp_data.py'
2022-06-10T20:52:26,916   adding 'stereo/core/stereo_result.py'
2022-06-10T20:52:26,919   adding 'stereo/core/tool_base.py'
2022-06-10T20:52:26,922   adding 'stereo/image/__init__.py'
2022-06-10T20:52:26,925   adding 'stereo/image/pyramid.py'
2022-06-10T20:52:26,928   adding 'stereo/image/segmentation/__init__.py'
2022-06-10T20:52:26,931   adding 'stereo/image/segmentation/segment.py'
2022-06-10T20:52:26,934   adding 'stereo/image/segmentation/seg_utils/__init__.py'
2022-06-10T20:52:26,939   adding 'stereo/image/segmentation/seg_utils/cell_infer.py'
2022-06-10T20:52:26,942   adding 'stereo/image/segmentation/seg_utils/cell_seg_pipeline.py'
2022-06-10T20:52:26,945   adding 'stereo/image/segmentation/seg_utils/dataset.py'
2022-06-10T20:52:26,949   adding 'stereo/image/segmentation/seg_utils/find_maxima.py'
2022-06-10T20:52:26,952   adding 'stereo/image/segmentation/seg_utils/grade.py'
2022-06-10T20:52:26,954   adding 'stereo/image/segmentation/seg_utils/image.py'
2022-06-10T20:52:26,957   adding 'stereo/image/segmentation/seg_utils/resnet_unet.py'
2022-06-10T20:52:26,964   adding 'stereo/image/segmentation/seg_utils/utils.py'
2022-06-10T20:52:26,968   adding 'stereo/image/segmentation/seg_utils/models/SE_weight_module.py'
2022-06-10T20:52:26,971   adding 'stereo/image/segmentation/seg_utils/models/__init__.py'
2022-06-10T20:52:26,976   adding 'stereo/image/segmentation/seg_utils/models/epsanet.py'
2022-06-10T20:52:26,980   adding 'stereo/image/segmentation_deepcell/__init__.py'
2022-06-10T20:52:26,982   adding 'stereo/image/segmentation_deepcell/segment.py'
2022-06-10T20:52:26,985   adding 'stereo/image/segmentation_deepcell/seg_utils/__init__.py'
2022-06-10T20:52:26,990   adding 'stereo/image/segmentation_deepcell/seg_utils/cell_infer.py'
2022-06-10T20:52:26,995   adding 'stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py'
2022-06-10T20:52:26,999   adding 'stereo/image/segmentation_deepcell/seg_utils/find_maxima.py'
2022-06-10T20:52:27,002   adding 'stereo/image/segmentation_deepcell/seg_utils/grade.py'
2022-06-10T20:52:27,005   adding 'stereo/image/segmentation_deepcell/seg_utils/image.py'
2022-06-10T20:52:27,009   adding 'stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py'
2022-06-10T20:52:27,012   adding 'stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py'
2022-06-10T20:52:27,019   adding 'stereo/image/segmentation_deepcell/seg_utils/utils.py'
2022-06-10T20:52:27,023   adding 'stereo/image/tissue_cut/__init__.py'
2022-06-10T20:52:27,025   adding 'stereo/image/tissue_cut/tissue_seg.py'
2022-06-10T20:52:27,028   adding 'stereo/image/tissue_cut/tissueCut_utils/__init__.py'
2022-06-10T20:52:27,033   adding 'stereo/image/tissue_cut/tissueCut_utils/tissue_seg_net.py'
2022-06-10T20:52:27,037   adding 'stereo/image/tissue_cut/tissueCut_utils/tissue_seg_pipeline.py'
2022-06-10T20:52:27,040   adding 'stereo/image/tissue_cut/tissueCut_utils/tissue_seg_utils.py'
2022-06-10T20:52:27,044   adding 'stereo/io/__init__.py'
2022-06-10T20:52:27,047   adding 'stereo/io/gef.py'
2022-06-10T20:52:27,053   adding 'stereo/io/h5ad.py'
2022-06-10T20:52:27,062   adding 'stereo/io/reader.py'
2022-06-10T20:52:27,066   adding 'stereo/io/writer.py'
2022-06-10T20:52:27,070   adding 'stereo/plots/__init__.py'
2022-06-10T20:52:27,075   adding 'stereo/plots/marker_genes.py'
2022-06-10T20:52:27,079   adding 'stereo/plots/plot_collection.py'
2022-06-10T20:52:27,084   adding 'stereo/plots/scatter.py'
2022-06-10T20:52:27,086   adding 'stereo/plots/violin.py'
2022-06-10T20:52:27,090   adding 'stereo/plots/_plot_basic/__init__.py'
2022-06-10T20:52:27,093   adding 'stereo/plots/_plot_basic/get_stereo_data.py'
2022-06-10T20:52:27,098   adding 'stereo/plots/_plot_basic/heatmap_plt.py'
2022-06-10T20:52:27,102   adding 'stereo/plots/interact_plot/__init__.py'
2022-06-10T20:52:27,105   adding 'stereo/plots/interact_plot/interactive_scatter.py'
2022-06-10T20:52:27,108   adding 'stereo/plots/interact_plot/poly_selection.py'
2022-06-10T20:52:27,111   adding 'stereo/plots/interact_plot/spatial_cluster.py'
2022-06-10T20:52:27,115   adding 'stereo/preprocess/__init__.py'
2022-06-10T20:52:27,117   adding 'stereo/preprocess/filter.py'
2022-06-10T20:52:27,120   adding 'stereo/preprocess/normalize.py'
2022-06-10T20:52:27,123   adding 'stereo/preprocess/qc.py'
2022-06-10T20:52:27,125   adding 'stereo/preprocess/sc_transform.py'
2022-06-10T20:52:27,129   adding 'stereo/tools/__init__.py'
2022-06-10T20:52:27,133   adding 'stereo/tools/cell_correct.py'
2022-06-10T20:52:27,135   adding 'stereo/tools/cell_cut.py'
2022-06-10T20:52:27,138   adding 'stereo/tools/cell_segment.py'
2022-06-10T20:52:27,142   adding 'stereo/tools/cell_type_anno.py'
2022-06-10T20:52:27,146   adding 'stereo/tools/cluster.py'
2022-06-10T20:52:27,149   adding 'stereo/tools/clustering.py'
2022-06-10T20:52:27,152   adding 'stereo/tools/dim_reduce.py'
2022-06-10T20:52:27,156   adding 'stereo/tools/find_markers.py'
2022-06-10T20:52:27,159   adding 'stereo/tools/highly_variable_genes.py'
2022-06-10T20:52:27,162   adding 'stereo/tools/spatial_lag.py'
2022-06-10T20:52:27,164   adding 'stereo/tools/spatial_pattern_score.py'
2022-06-10T20:52:27,168   adding 'stereo/utils/__init__.py'
2022-06-10T20:52:27,170   adding 'stereo/utils/correlation.py'
2022-06-10T20:52:27,173   adding 'stereo/utils/data_helper.py'
2022-06-10T20:52:27,176   adding 'stereo/utils/hvg_utils.py'
2022-06-10T20:52:27,178   adding 'stereo/utils/spmatrix_helper.py'
2022-06-10T20:52:27,183   adding 'stereopy-0.3.0.dist-info/LICENSE'
2022-06-10T20:52:27,185   adding 'stereopy-0.3.0.dist-info/METADATA'
2022-06-10T20:52:27,187   adding 'stereopy-0.3.0.dist-info/WHEEL'
2022-06-10T20:52:27,188   adding 'stereopy-0.3.0.dist-info/top_level.txt'
2022-06-10T20:52:27,191   adding 'stereopy-0.3.0.dist-info/RECORD'
2022-06-10T20:52:27,203   removing build/bdist.linux-armv7l/wheel
2022-06-10T20:52:27,541   Building wheel for stereopy (setup.py): finished with status 'done'
2022-06-10T20:52:27,555   Created wheel for stereopy: filename=stereopy-0.3.0-py3-none-any.whl size=198886 sha256=0656dab52c5d0c4807a5506ab388950e6bbb87788f5799902aa19249f4b2053c
2022-06-10T20:52:27,557   Stored in directory: /tmp/pip-ephem-wheel-cache-towq2_p8/wheels/a5/a9/85/0c8ea2ac5a1e6f458132de3dbec15c185695ec349c4a51a279
2022-06-10T20:52:27,591 Successfully built stereopy
2022-06-10T20:52:27,612 Removed build tracker: '/tmp/pip-build-tracker-i09y07q_'