2022-06-13T14:06:43,474 Created temporary directory: /tmp/pip-ephem-wheel-cache-60hf0tv2
2022-06-13T14:06:43,480 Created temporary directory: /tmp/pip-req-tracker-c5nh6juy
2022-06-13T14:06:43,481 Initialized build tracking at /tmp/pip-req-tracker-c5nh6juy
2022-06-13T14:06:43,482 Created build tracker: /tmp/pip-req-tracker-c5nh6juy
2022-06-13T14:06:43,482 Entered build tracker: /tmp/pip-req-tracker-c5nh6juy
2022-06-13T14:06:43,483 Created temporary directory: /tmp/pip-wheel-5xf6k484
2022-06-13T14:06:43,543 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-06-13T14:06:43,546 2 location(s) to search for versions of ingenannot:
2022-06-13T14:06:43,546 * https://pypi.org/simple/ingenannot/
2022-06-13T14:06:43,546 * https://www.piwheels.org/simple/ingenannot/
2022-06-13T14:06:43,547 Fetching project page and analyzing links: https://pypi.org/simple/ingenannot/
2022-06-13T14:06:43,549 Getting page https://pypi.org/simple/ingenannot/
2022-06-13T14:06:43,553 Found index url https://pypi.org/simple
2022-06-13T14:06:43,866   Skipping link: No binaries permitted for ingenannot: https://files.pythonhosted.org/packages/e5/5a/a63723108529ebf74f973a9b88c544dc1b2f5ba185f6a2c36960b2247c3c/ingenannot-0.0-py3-none-any.whl#sha256=f2d165b7d6d1e0212ae831224f18111c28a055e2ef5cd2aacb6ea007f83775e5 (from https://pypi.org/simple/ingenannot/)
2022-06-13T14:06:43,867   Found link https://files.pythonhosted.org/packages/6c/f0/23e4b467f41f86c6b579bfda21c20bd48070821bae4482870894065d28e6/ingenannot-0.0.tar.gz#sha256=3adaccb3bb2964284c95158754b88977a7994b723a81ff0113a087b66bca997d (from https://pypi.org/simple/ingenannot/), version: 0.0
2022-06-13T14:06:43,868 Fetching project page and analyzing links: https://www.piwheels.org/simple/ingenannot/
2022-06-13T14:06:43,869 Getting page https://www.piwheels.org/simple/ingenannot/
2022-06-13T14:06:43,871 Found index url https://www.piwheels.org/simple
2022-06-13T14:06:44,121 Given no hashes to check 1 links for project 'ingenannot': discarding no candidates
2022-06-13T14:06:44,152 Collecting ingenannot==0.0
2022-06-13T14:06:44,156   Created temporary directory: /tmp/pip-unpack-9ethlp_z
2022-06-13T14:06:44,374   Downloading ingenannot-0.0.tar.gz (79 kB)
2022-06-13T14:06:44,775   Added ingenannot==0.0 from https://files.pythonhosted.org/packages/6c/f0/23e4b467f41f86c6b579bfda21c20bd48070821bae4482870894065d28e6/ingenannot-0.0.tar.gz#sha256=3adaccb3bb2964284c95158754b88977a7994b723a81ff0113a087b66bca997d to build tracker '/tmp/pip-req-tracker-c5nh6juy'
2022-06-13T14:06:44,777     Running setup.py (path:/tmp/pip-wheel-5xf6k484/ingenannot_79ec2e1ab7624cb987cbfe2ca20c3bf2/setup.py) egg_info for package ingenannot
2022-06-13T14:06:44,778     Created temporary directory: /tmp/pip-pip-egg-info-vm0lyfzd
2022-06-13T14:06:44,779     Running command python setup.py egg_info
2022-06-13T14:06:47,035     running egg_info
2022-06-13T14:06:47,042     creating /tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info
2022-06-13T14:06:47,045     writing top-level names to /tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info/top_level.txt
2022-06-13T14:06:47,048     writing /tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info/PKG-INFO
2022-06-13T14:06:47,052     writing dependency_links to /tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info/dependency_links.txt
2022-06-13T14:06:47,054     writing entry points to /tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info/entry_points.txt
2022-06-13T14:06:47,057     writing requirements to /tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info/requires.txt
2022-06-13T14:06:47,061     writing manifest file '/tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info/SOURCES.txt'
2022-06-13T14:06:47,453     reading manifest file '/tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info/SOURCES.txt'
2022-06-13T14:06:47,465     writing manifest file '/tmp/pip-pip-egg-info-vm0lyfzd/ingenannot.egg-info/SOURCES.txt'
2022-06-13T14:06:47,610   Source in /tmp/pip-wheel-5xf6k484/ingenannot_79ec2e1ab7624cb987cbfe2ca20c3bf2 has version 0.0, which satisfies requirement ingenannot==0.0 from https://files.pythonhosted.org/packages/6c/f0/23e4b467f41f86c6b579bfda21c20bd48070821bae4482870894065d28e6/ingenannot-0.0.tar.gz#sha256=3adaccb3bb2964284c95158754b88977a7994b723a81ff0113a087b66bca997d
2022-06-13T14:06:47,612   Removed ingenannot==0.0 from https://files.pythonhosted.org/packages/6c/f0/23e4b467f41f86c6b579bfda21c20bd48070821bae4482870894065d28e6/ingenannot-0.0.tar.gz#sha256=3adaccb3bb2964284c95158754b88977a7994b723a81ff0113a087b66bca997d from build tracker '/tmp/pip-req-tracker-c5nh6juy'
2022-06-13T14:06:47,620 Created temporary directory: /tmp/pip-unpack-kfju_csf
2022-06-13T14:06:47,621 Building wheels for collected packages: ingenannot
2022-06-13T14:06:47,630   Created temporary directory: /tmp/pip-wheel-1pd4ads_
2022-06-13T14:06:47,631   Building wheel for ingenannot (setup.py): started
2022-06-13T14:06:47,632   Destination directory: /tmp/pip-wheel-1pd4ads_
2022-06-13T14:06:47,632   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5xf6k484/ingenannot_79ec2e1ab7624cb987cbfe2ca20c3bf2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5xf6k484/ingenannot_79ec2e1ab7624cb987cbfe2ca20c3bf2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1pd4ads_
2022-06-13T14:06:49,984   running bdist_wheel
2022-06-13T14:06:49,999   running build
2022-06-13T14:06:50,000   running build_py
2022-06-13T14:06:50,339   creating build
2022-06-13T14:06:50,340   creating build/lib
2022-06-13T14:06:50,341   creating build/lib/ingenannot
2022-06-13T14:06:50,343   copying ingenannot/__init__.py -> build/lib/ingenannot
2022-06-13T14:06:50,347   copying ingenannot/ingenannot.py -> build/lib/ingenannot
2022-06-13T14:06:50,355   copying ingenannot/version.py -> build/lib/ingenannot
2022-06-13T14:06:50,362   creating build/lib/ingenannot/commands
2022-06-13T14:06:50,364   copying ingenannot/commands/command.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,368   copying ingenannot/commands/utr_refine.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,373   copying ingenannot/commands/add_sqanti3_isoforms.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,378   copying ingenannot/commands/SupportIsoformFilter.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,385   copying ingenannot/commands/strand_annotation_filter.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,391   copying ingenannot/commands/StringtieFilter.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,397   copying ingenannot/commands/filter.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,403   copying ingenannot/commands/clusterize.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,408   copying ingenannot/commands/effector_predictor_cmd.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,412   copying ingenannot/commands/aed_compare.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,417   copying ingenannot/commands/aed.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,422   copying ingenannot/commands/__init__.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,428   copying ingenannot/commands/validate.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,435   copying ingenannot/commands/compare.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,443   copying ingenannot/commands/StringtieJaclip.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,448   copying ingenannot/commands/rename.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,453   copying ingenannot/commands/reduce.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,459   copying ingenannot/commands/StringtieStats.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,465   copying ingenannot/commands/StringtieRefine.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,471   copying ingenannot/commands/so_classification.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,477   copying ingenannot/commands/isoform_ranking.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,486   copying ingenannot/commands/exonerate_to_gff.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,491   copying ingenannot/commands/select.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,499   copying ingenannot/commands/rescue_effectors.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,505   copying ingenannot/commands/AddIsoforms.py -> build/lib/ingenannot/commands
2022-06-13T14:06:50,517   creating build/lib/ingenannot/entities
2022-06-13T14:06:50,520   copying ingenannot/entities/intron.py -> build/lib/ingenannot/entities
2022-06-13T14:06:50,527   copying ingenannot/entities/metagene.py -> build/lib/ingenannot/entities
2022-06-13T14:06:50,532   copying ingenannot/entities/exon.py -> build/lib/ingenannot/entities
2022-06-13T14:06:50,536   copying ingenannot/entities/cds.py -> build/lib/ingenannot/entities
2022-06-13T14:06:50,541   copying ingenannot/entities/cluster.py -> build/lib/ingenannot/entities
2022-06-13T14:06:50,545   copying ingenannot/entities/__init__.py -> build/lib/ingenannot/entities
2022-06-13T14:06:50,549   copying ingenannot/entities/gene.py -> build/lib/ingenannot/entities
2022-06-13T14:06:50,558   copying ingenannot/entities/transcript.py -> build/lib/ingenannot/entities
2022-06-13T14:06:50,570   creating build/lib/ingenannot/utils
2022-06-13T14:06:50,572   copying ingenannot/utils/so_splicing_classifier.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,579   copying ingenannot/utils/gene_builder.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,587   copying ingenannot/utils/em_operators.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,592   copying ingenannot/utils/compute_aed.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,600   copying ingenannot/utils/tool_checker.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,605   copying ingenannot/utils/__init__.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,613   copying ingenannot/utils/gff_reader.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,619   copying ingenannot/utils/annot_edit_distance.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,624   copying ingenannot/utils/graphics.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,628   copying ingenannot/utils/effector_predictor.py -> build/lib/ingenannot/utils
2022-06-13T14:06:50,659   installing to build/bdist.linux-armv7l/wheel
2022-06-13T14:06:50,660   running install
2022-06-13T14:06:50,662   running install_lib
2022-06-13T14:06:50,669   creating build/bdist.linux-armv7l
2022-06-13T14:06:50,670   creating build/bdist.linux-armv7l/wheel
2022-06-13T14:06:50,674   creating build/bdist.linux-armv7l/wheel/ingenannot
2022-06-13T14:06:50,677   creating build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,679   copying build/lib/ingenannot/utils/so_splicing_classifier.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,684   copying build/lib/ingenannot/utils/gene_builder.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,689   copying build/lib/ingenannot/utils/em_operators.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,693   copying build/lib/ingenannot/utils/compute_aed.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,701   copying build/lib/ingenannot/utils/tool_checker.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,706   copying build/lib/ingenannot/utils/__init__.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,714   copying build/lib/ingenannot/utils/gff_reader.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,720   copying build/lib/ingenannot/utils/annot_edit_distance.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,725   copying build/lib/ingenannot/utils/graphics.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,729   copying build/lib/ingenannot/utils/effector_predictor.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T14:06:50,736   creating build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,738   copying build/lib/ingenannot/entities/intron.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,744   copying build/lib/ingenannot/entities/metagene.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,751   copying build/lib/ingenannot/entities/exon.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,756   copying build/lib/ingenannot/entities/cds.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,760   copying build/lib/ingenannot/entities/cluster.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,764   copying build/lib/ingenannot/entities/__init__.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,767   copying build/lib/ingenannot/entities/gene.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,772   copying build/lib/ingenannot/entities/transcript.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T14:06:50,779   copying build/lib/ingenannot/__init__.py -> build/bdist.linux-armv7l/wheel/ingenannot
2022-06-13T14:06:50,784   copying build/lib/ingenannot/ingenannot.py -> build/bdist.linux-armv7l/wheel/ingenannot
2022-06-13T14:06:50,796   creating build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,798   copying build/lib/ingenannot/commands/command.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,804   copying build/lib/ingenannot/commands/utr_refine.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,811   copying build/lib/ingenannot/commands/add_sqanti3_isoforms.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,817   copying build/lib/ingenannot/commands/SupportIsoformFilter.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,823   copying build/lib/ingenannot/commands/strand_annotation_filter.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,828   copying build/lib/ingenannot/commands/StringtieFilter.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,832   copying build/lib/ingenannot/commands/filter.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,838   copying build/lib/ingenannot/commands/clusterize.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,844   copying build/lib/ingenannot/commands/effector_predictor_cmd.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,849   copying build/lib/ingenannot/commands/aed_compare.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,856   copying build/lib/ingenannot/commands/aed.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,861   copying build/lib/ingenannot/commands/__init__.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,865   copying build/lib/ingenannot/commands/validate.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,869   copying build/lib/ingenannot/commands/compare.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,875   copying build/lib/ingenannot/commands/StringtieJaclip.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,882   copying build/lib/ingenannot/commands/rename.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,888   copying build/lib/ingenannot/commands/reduce.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,896   copying build/lib/ingenannot/commands/StringtieStats.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,903   copying build/lib/ingenannot/commands/StringtieRefine.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,909   copying build/lib/ingenannot/commands/so_classification.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,914   copying build/lib/ingenannot/commands/isoform_ranking.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,922   copying build/lib/ingenannot/commands/exonerate_to_gff.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,927   copying build/lib/ingenannot/commands/select.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,934   copying build/lib/ingenannot/commands/rescue_effectors.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,941   copying build/lib/ingenannot/commands/AddIsoforms.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T14:06:50,950   copying build/lib/ingenannot/version.py -> build/bdist.linux-armv7l/wheel/ingenannot
2022-06-13T14:06:50,955   running install_egg_info
2022-06-13T14:06:51,005   running egg_info
2022-06-13T14:06:51,008   writing entry points to ingenannot.egg-info/entry_points.txt
2022-06-13T14:06:51,011   writing dependency_links to ingenannot.egg-info/dependency_links.txt
2022-06-13T14:06:51,014   writing top-level names to ingenannot.egg-info/top_level.txt
2022-06-13T14:06:51,015   writing ingenannot.egg-info/PKG-INFO
2022-06-13T14:06:51,019   writing requirements to ingenannot.egg-info/requires.txt
2022-06-13T14:06:51,063   reading manifest file 'ingenannot.egg-info/SOURCES.txt'
2022-06-13T14:06:51,095   writing manifest file 'ingenannot.egg-info/SOURCES.txt'
2022-06-13T14:06:51,099   Copying ingenannot.egg-info to build/bdist.linux-armv7l/wheel/ingenannot-0.0-py3.5.egg-info
2022-06-13T14:06:51,131   running install_scripts
2022-06-13T14:06:51,336   creating build/bdist.linux-armv7l/wheel/ingenannot-0.0.dist-info/WHEEL
2022-06-13T14:06:51,776   Building wheel for ingenannot (setup.py): finished with status 'done'
2022-06-13T14:06:51,782   Created wheel for ingenannot: filename=ingenannot-0.0-py3-none-any.whl size=97596 sha256=a8ebdf5bd0735d68320569b0c02c4430d2a8179e94444468a3340fe836c19db6
2022-06-13T14:06:51,783   Stored in directory: /tmp/pip-ephem-wheel-cache-60hf0tv2/wheels/3a/d9/81/aae841327054e45097c7c64c29ec74730d826bc503b98bc683
2022-06-13T14:06:51,804 Successfully built ingenannot
2022-06-13T14:06:51,825 Removed build tracker: '/tmp/pip-req-tracker-c5nh6juy'