2022-06-13T15:27:09,849 Created temporary directory: /tmp/pip-ephem-wheel-cache-7hnxt3nm
2022-06-13T15:27:09,856 Created temporary directory: /tmp/pip-req-tracker-dj4geeih
2022-06-13T15:27:09,857 Initialized build tracking at /tmp/pip-req-tracker-dj4geeih
2022-06-13T15:27:09,857 Created build tracker: /tmp/pip-req-tracker-dj4geeih
2022-06-13T15:27:09,858 Entered build tracker: /tmp/pip-req-tracker-dj4geeih
2022-06-13T15:27:09,859 Created temporary directory: /tmp/pip-wheel-j0a89t8g
2022-06-13T15:27:09,928 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-06-13T15:27:09,932 2 location(s) to search for versions of ingenannot:
2022-06-13T15:27:09,932 * https://pypi.org/simple/ingenannot/
2022-06-13T15:27:09,932 * https://www.piwheels.org/simple/ingenannot/
2022-06-13T15:27:09,933 Fetching project page and analyzing links: https://pypi.org/simple/ingenannot/
2022-06-13T15:27:09,935 Getting page https://pypi.org/simple/ingenannot/
2022-06-13T15:27:09,939 Found index url https://pypi.org/simple
2022-06-13T15:27:10,262   Skipping link: No binaries permitted for ingenannot: https://files.pythonhosted.org/packages/e5/5a/a63723108529ebf74f973a9b88c544dc1b2f5ba185f6a2c36960b2247c3c/ingenannot-0.0-py3-none-any.whl#sha256=f2d165b7d6d1e0212ae831224f18111c28a055e2ef5cd2aacb6ea007f83775e5 (from https://pypi.org/simple/ingenannot/)
2022-06-13T15:27:10,263   Found link https://files.pythonhosted.org/packages/6c/f0/23e4b467f41f86c6b579bfda21c20bd48070821bae4482870894065d28e6/ingenannot-0.0.tar.gz#sha256=3adaccb3bb2964284c95158754b88977a7994b723a81ff0113a087b66bca997d (from https://pypi.org/simple/ingenannot/), version: 0.0
2022-06-13T15:27:10,264   Skipping link: No binaries permitted for ingenannot: https://files.pythonhosted.org/packages/eb/c6/38e555c4aaec4eb3b20d5c5f16920f7bcaa8440cfc045bc9f78adfc20813/ingenannot-0.0.3-py3-none-any.whl#sha256=9864be03443efd4ae813f9c9971e67c2167357c61e77805c0940ae5359a4864e (from https://pypi.org/simple/ingenannot/)
2022-06-13T15:27:10,265   Found link https://files.pythonhosted.org/packages/9d/3d/0932d95ca9e2fdfd1c48b35e7c0f1f44440d13004c6eb14a6db65bf9ce74/ingenannot-0.0.3.tar.gz#sha256=68c3b9e37bf3019d55c6c98466c4dd2433fdb99d87b770f354924ce4a2efd55a (from https://pypi.org/simple/ingenannot/), version: 0.0.3
2022-06-13T15:27:10,265 Fetching project page and analyzing links: https://www.piwheels.org/simple/ingenannot/
2022-06-13T15:27:10,266 Getting page https://www.piwheels.org/simple/ingenannot/
2022-06-13T15:27:10,269 Found index url https://www.piwheels.org/simple
2022-06-13T15:27:10,481   Skipping link: No binaries permitted for ingenannot: https://www.piwheels.org/simple/ingenannot/ingenannot-0.0-py3-none-any.whl#sha256=a8ebdf5bd0735d68320569b0c02c4430d2a8179e94444468a3340fe836c19db6 (from https://www.piwheels.org/simple/ingenannot/)
2022-06-13T15:27:10,511 Given no hashes to check 1 links for project 'ingenannot': discarding no candidates
2022-06-13T15:27:10,543 Collecting ingenannot==0.0.3
2022-06-13T15:27:10,547   Created temporary directory: /tmp/pip-unpack-wocdgv95
2022-06-13T15:27:10,767   Downloading ingenannot-0.0.3.tar.gz (82 kB)
2022-06-13T15:27:11,164   Added ingenannot==0.0.3 from https://files.pythonhosted.org/packages/9d/3d/0932d95ca9e2fdfd1c48b35e7c0f1f44440d13004c6eb14a6db65bf9ce74/ingenannot-0.0.3.tar.gz#sha256=68c3b9e37bf3019d55c6c98466c4dd2433fdb99d87b770f354924ce4a2efd55a to build tracker '/tmp/pip-req-tracker-dj4geeih'
2022-06-13T15:27:11,166     Running setup.py (path:/tmp/pip-wheel-j0a89t8g/ingenannot_e7d63a36ecf14157865bfbe8ea075008/setup.py) egg_info for package ingenannot
2022-06-13T15:27:11,167     Created temporary directory: /tmp/pip-pip-egg-info-jkgbrpic
2022-06-13T15:27:11,168     Running command python setup.py egg_info
2022-06-13T15:27:13,351     running egg_info
2022-06-13T15:27:13,356     creating /tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info
2022-06-13T15:27:13,360     writing /tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info/PKG-INFO
2022-06-13T15:27:13,366     writing entry points to /tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info/entry_points.txt
2022-06-13T15:27:13,368     writing requirements to /tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info/requires.txt
2022-06-13T15:27:13,370     writing top-level names to /tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info/top_level.txt
2022-06-13T15:27:13,372     writing dependency_links to /tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info/dependency_links.txt
2022-06-13T15:27:13,376     writing manifest file '/tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info/SOURCES.txt'
2022-06-13T15:27:13,730     reading manifest file '/tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info/SOURCES.txt'
2022-06-13T15:27:13,742     writing manifest file '/tmp/pip-pip-egg-info-jkgbrpic/ingenannot.egg-info/SOURCES.txt'
2022-06-13T15:27:13,883   Source in /tmp/pip-wheel-j0a89t8g/ingenannot_e7d63a36ecf14157865bfbe8ea075008 has version 0.0.3, which satisfies requirement ingenannot==0.0.3 from https://files.pythonhosted.org/packages/9d/3d/0932d95ca9e2fdfd1c48b35e7c0f1f44440d13004c6eb14a6db65bf9ce74/ingenannot-0.0.3.tar.gz#sha256=68c3b9e37bf3019d55c6c98466c4dd2433fdb99d87b770f354924ce4a2efd55a
2022-06-13T15:27:13,885   Removed ingenannot==0.0.3 from https://files.pythonhosted.org/packages/9d/3d/0932d95ca9e2fdfd1c48b35e7c0f1f44440d13004c6eb14a6db65bf9ce74/ingenannot-0.0.3.tar.gz#sha256=68c3b9e37bf3019d55c6c98466c4dd2433fdb99d87b770f354924ce4a2efd55a from build tracker '/tmp/pip-req-tracker-dj4geeih'
2022-06-13T15:27:13,895 Created temporary directory: /tmp/pip-unpack-j9idubry
2022-06-13T15:27:13,896 Building wheels for collected packages: ingenannot
2022-06-13T15:27:13,904   Created temporary directory: /tmp/pip-wheel-ijfsw2a1
2022-06-13T15:27:13,905   Building wheel for ingenannot (setup.py): started
2022-06-13T15:27:13,906   Destination directory: /tmp/pip-wheel-ijfsw2a1
2022-06-13T15:27:13,907   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-j0a89t8g/ingenannot_e7d63a36ecf14157865bfbe8ea075008/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-j0a89t8g/ingenannot_e7d63a36ecf14157865bfbe8ea075008/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ijfsw2a1
2022-06-13T15:27:16,141   running bdist_wheel
2022-06-13T15:27:16,157   running build
2022-06-13T15:27:16,157   running build_py
2022-06-13T15:27:16,496   creating build
2022-06-13T15:27:16,497   creating build/lib
2022-06-13T15:27:16,499   creating build/lib/ingenannot
2022-06-13T15:27:16,501   copying ingenannot/__init__.py -> build/lib/ingenannot
2022-06-13T15:27:16,505   copying ingenannot/ingenannot.py -> build/lib/ingenannot
2022-06-13T15:27:16,513   copying ingenannot/version.py -> build/lib/ingenannot
2022-06-13T15:27:16,519   creating build/lib/ingenannot/commands
2022-06-13T15:27:16,521   copying ingenannot/commands/command.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,525   copying ingenannot/commands/isoform_ranking.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,533   copying ingenannot/commands/rescue_effectors.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,538   copying ingenannot/commands/utr_refine.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,544   copying ingenannot/commands/compare.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,549   copying ingenannot/commands/AddIsoforms.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,558   copying ingenannot/commands/StringtieRefine.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,563   copying ingenannot/commands/aed_compare.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,569   copying ingenannot/commands/SupportIsoformFilter.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,577   copying ingenannot/commands/select.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,583   copying ingenannot/commands/clusterize.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,587   copying ingenannot/commands/__init__.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,591   copying ingenannot/commands/filter.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,596   copying ingenannot/commands/StringtieStats.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,602   copying ingenannot/commands/exonerate_to_gff.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,608   copying ingenannot/commands/StringtieFilter.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,613   copying ingenannot/commands/StringtieJaclip.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,619   copying ingenannot/commands/aed.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,624   copying ingenannot/commands/validate.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,629   copying ingenannot/commands/add_sqanti3_isoforms.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,634   copying ingenannot/commands/reduce.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,640   copying ingenannot/commands/rename.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,647   copying ingenannot/commands/so_classification.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,652   copying ingenannot/commands/strand_annotation_filter.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,658   copying ingenannot/commands/effector_predictor_cmd.py -> build/lib/ingenannot/commands
2022-06-13T15:27:16,664   creating build/lib/ingenannot/entities
2022-06-13T15:27:16,666   copying ingenannot/entities/metagene.py -> build/lib/ingenannot/entities
2022-06-13T15:27:16,671   copying ingenannot/entities/cluster.py -> build/lib/ingenannot/entities
2022-06-13T15:27:16,675   copying ingenannot/entities/transcript.py -> build/lib/ingenannot/entities
2022-06-13T15:27:16,681   copying ingenannot/entities/intron.py -> build/lib/ingenannot/entities
2022-06-13T15:27:16,685   copying ingenannot/entities/exon.py -> build/lib/ingenannot/entities
2022-06-13T15:27:16,689   copying ingenannot/entities/__init__.py -> build/lib/ingenannot/entities
2022-06-13T15:27:16,692   copying ingenannot/entities/cds.py -> build/lib/ingenannot/entities
2022-06-13T15:27:16,696   copying ingenannot/entities/gene.py -> build/lib/ingenannot/entities
2022-06-13T15:27:16,705   creating build/lib/ingenannot/utils
2022-06-13T15:27:16,707   copying ingenannot/utils/so_splicing_classifier.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,713   copying ingenannot/utils/gene_builder.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,720   copying ingenannot/utils/annot_edit_distance.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,725   copying ingenannot/utils/__init__.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,732   copying ingenannot/utils/graphics.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,736   copying ingenannot/utils/tool_checker.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,741   copying ingenannot/utils/effector_predictor.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,748   copying ingenannot/utils/em_operators.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,754   copying ingenannot/utils/gff_reader.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,760   copying ingenannot/utils/compute_aed.py -> build/lib/ingenannot/utils
2022-06-13T15:27:16,781   installing to build/bdist.linux-armv7l/wheel
2022-06-13T15:27:16,782   running install
2022-06-13T15:27:16,784   running install_lib
2022-06-13T15:27:16,791   creating build/bdist.linux-armv7l
2022-06-13T15:27:16,792   creating build/bdist.linux-armv7l/wheel
2022-06-13T15:27:16,795   creating build/bdist.linux-armv7l/wheel/ingenannot
2022-06-13T15:27:16,799   creating build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,801   copying build/lib/ingenannot/utils/so_splicing_classifier.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,805   copying build/lib/ingenannot/utils/gene_builder.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,811   copying build/lib/ingenannot/utils/annot_edit_distance.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,816   copying build/lib/ingenannot/utils/__init__.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,823   copying build/lib/ingenannot/utils/graphics.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,829   copying build/lib/ingenannot/utils/tool_checker.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,834   copying build/lib/ingenannot/utils/effector_predictor.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,841   copying build/lib/ingenannot/utils/em_operators.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,845   copying build/lib/ingenannot/utils/gff_reader.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,850   copying build/lib/ingenannot/utils/compute_aed.py -> build/bdist.linux-armv7l/wheel/ingenannot/utils
2022-06-13T15:27:16,857   creating build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,859   copying build/lib/ingenannot/commands/command.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,864   copying build/lib/ingenannot/commands/isoform_ranking.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,874   copying build/lib/ingenannot/commands/rescue_effectors.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,881   copying build/lib/ingenannot/commands/utr_refine.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,887   copying build/lib/ingenannot/commands/compare.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,892   copying build/lib/ingenannot/commands/AddIsoforms.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,900   copying build/lib/ingenannot/commands/StringtieRefine.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,905   copying build/lib/ingenannot/commands/aed_compare.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,912   copying build/lib/ingenannot/commands/SupportIsoformFilter.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,919   copying build/lib/ingenannot/commands/select.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,926   copying build/lib/ingenannot/commands/clusterize.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,931   copying build/lib/ingenannot/commands/__init__.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,934   copying build/lib/ingenannot/commands/filter.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,939   copying build/lib/ingenannot/commands/StringtieStats.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,945   copying build/lib/ingenannot/commands/exonerate_to_gff.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,951   copying build/lib/ingenannot/commands/StringtieFilter.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,957   copying build/lib/ingenannot/commands/StringtieJaclip.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,963   copying build/lib/ingenannot/commands/aed.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,968   copying build/lib/ingenannot/commands/validate.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,973   copying build/lib/ingenannot/commands/add_sqanti3_isoforms.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,977   copying build/lib/ingenannot/commands/reduce.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,983   copying build/lib/ingenannot/commands/rename.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,989   copying build/lib/ingenannot/commands/so_classification.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:16,995   copying build/lib/ingenannot/commands/strand_annotation_filter.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:17,001   copying build/lib/ingenannot/commands/effector_predictor_cmd.py -> build/bdist.linux-armv7l/wheel/ingenannot/commands
2022-06-13T15:27:17,006   copying build/lib/ingenannot/__init__.py -> build/bdist.linux-armv7l/wheel/ingenannot
2022-06-13T15:27:17,009   copying build/lib/ingenannot/ingenannot.py -> build/bdist.linux-armv7l/wheel/ingenannot
2022-06-13T15:27:17,017   copying build/lib/ingenannot/version.py -> build/bdist.linux-armv7l/wheel/ingenannot
2022-06-13T15:27:17,022   creating build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,024   copying build/lib/ingenannot/entities/metagene.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,031   copying build/lib/ingenannot/entities/cluster.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,036   copying build/lib/ingenannot/entities/transcript.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,044   copying build/lib/ingenannot/entities/intron.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,048   copying build/lib/ingenannot/entities/exon.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,052   copying build/lib/ingenannot/entities/__init__.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,055   copying build/lib/ingenannot/entities/cds.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,059   copying build/lib/ingenannot/entities/gene.py -> build/bdist.linux-armv7l/wheel/ingenannot/entities
2022-06-13T15:27:17,063   running install_egg_info
2022-06-13T15:27:17,115   running egg_info
2022-06-13T15:27:17,117   writing dependency_links to ingenannot.egg-info/dependency_links.txt
2022-06-13T15:27:17,120   writing top-level names to ingenannot.egg-info/top_level.txt
2022-06-13T15:27:17,122   writing ingenannot.egg-info/PKG-INFO
2022-06-13T15:27:17,127   writing entry points to ingenannot.egg-info/entry_points.txt
2022-06-13T15:27:17,130   writing requirements to ingenannot.egg-info/requires.txt
2022-06-13T15:27:17,146   reading manifest file 'ingenannot.egg-info/SOURCES.txt'
2022-06-13T15:27:17,163   writing manifest file 'ingenannot.egg-info/SOURCES.txt'
2022-06-13T15:27:17,166   Copying ingenannot.egg-info to build/bdist.linux-armv7l/wheel/ingenannot-0.0.3-py3.5.egg-info
2022-06-13T15:27:17,195   running install_scripts
2022-06-13T15:27:17,413   creating build/bdist.linux-armv7l/wheel/ingenannot-0.0.3.dist-info/WHEEL
2022-06-13T15:27:17,851   Building wheel for ingenannot (setup.py): finished with status 'done'
2022-06-13T15:27:17,856   Created wheel for ingenannot: filename=ingenannot-0.0.3-py3-none-any.whl size=103386 sha256=317988df109d148ad2e15fcb6cc87d4f986546ec1fa5da337be4c34f3e1097f2
2022-06-13T15:27:17,857   Stored in directory: /tmp/pip-ephem-wheel-cache-7hnxt3nm/wheels/e5/53/cb/5ba35fd0e78473cdf9cb2bfc806f3120902b7a4989a86037be
2022-06-13T15:27:17,881 Successfully built ingenannot
2022-06-13T15:27:17,903 Removed build tracker: '/tmp/pip-req-tracker-dj4geeih'