2022-06-17T23:05:33,596 Created temporary directory: /tmp/pip-ephem-wheel-cache-8q73f7tx 2022-06-17T23:05:33,602 Created temporary directory: /tmp/pip-build-tracker-mqkhxes4 2022-06-17T23:05:33,602 Initialized build tracking at /tmp/pip-build-tracker-mqkhxes4 2022-06-17T23:05:33,603 Created build tracker: /tmp/pip-build-tracker-mqkhxes4 2022-06-17T23:05:33,603 Entered build tracker: /tmp/pip-build-tracker-mqkhxes4 2022-06-17T23:05:33,604 Created temporary directory: /tmp/pip-wheel-oj7w0wqj 2022-06-17T23:05:33,674 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-17T23:05:33,682 2 location(s) to search for versions of pycytominer: 2022-06-17T23:05:33,682 * https://pypi.org/simple/pycytominer/ 2022-06-17T23:05:33,682 * https://www.piwheels.org/simple/pycytominer/ 2022-06-17T23:05:33,684 Fetching project page and analyzing links: https://pypi.org/simple/pycytominer/ 2022-06-17T23:05:33,685 Getting page https://pypi.org/simple/pycytominer/ 2022-06-17T23:05:33,688 Found index url https://pypi.org/simple 2022-06-17T23:05:33,796 Skipping link: No binaries permitted for pycytominer: https://files.pythonhosted.org/packages/d0/cc/7b19003d74687b6ca2442895c181b20ab1b78daa1cf132a37a0427cbadb0/pycytominer-0.1-py2.py3-none-any.whl#sha256=a6c92d6ba3716c480a5d4d91a9d4b435c69dae45dc860dfb46f64d18d36980a3 (from https://pypi.org/simple/pycytominer/) (requires-python:>=3.4) 2022-06-17T23:05:33,798 Found link https://files.pythonhosted.org/packages/8c/71/fa2a6186007ead270d2c2d4ff32d11e315b434e67cff7e0fb2ca9da29726/pycytominer-0.1.tar.gz#sha256=9f53bc9653e1c7fa4eac8a6b3bc0aa8f544dcd48e0f93f7ad041323e8eb6b1e9 (from https://pypi.org/simple/pycytominer/) (requires-python:>=3.4), version: 0.1 2022-06-17T23:05:33,799 Skipping link: No binaries permitted for pycytominer: https://files.pythonhosted.org/packages/65/7b/56a4051e337cefd8f4a32fe01acde3f5f4faeb6ffc7abd11f758b5eff4cb/pycytominer-0.2.0-py2.py3-none-any.whl#sha256=6f99a5245586444bf19ac3c127a383fe22ac231f28d426635015be8adc1bbb3e (from https://pypi.org/simple/pycytominer/) (requires-python:>=3.4) 2022-06-17T23:05:33,800 Found link https://files.pythonhosted.org/packages/9f/9f/52c4b2c48dbb13ff9355c3d482a3396a4ecf3ea6c74ca7b77c3ee5ce5b02/pycytominer-0.2.0.tar.gz#sha256=3f64cc584b50c80bd2141aab9b3acd77dbd1b651f3764b0d2e03bc963484f1bf (from https://pypi.org/simple/pycytominer/) (requires-python:>=3.4), version: 0.2.0 2022-06-17T23:05:33,801 Fetching project page and analyzing links: https://www.piwheels.org/simple/pycytominer/ 2022-06-17T23:05:33,802 Getting page https://www.piwheels.org/simple/pycytominer/ 2022-06-17T23:05:33,804 Found index url https://www.piwheels.org/simple 2022-06-17T23:05:34,028 Skipping link: No binaries permitted for pycytominer: https://www.piwheels.org/simple/pycytominer/pycytominer-0.1-py2.py3-none-any.whl#sha256=555bb2a19b7326d9f5f67259d89dce272b375c341341d27678d28a8f3e7b1225 (from https://www.piwheels.org/simple/pycytominer/) (requires-python:>=3.4) 2022-06-17T23:05:34,028 Skipping link: not a file: https://www.piwheels.org/simple/pycytominer/ 2022-06-17T23:05:34,029 Skipping link: not a file: https://pypi.org/simple/pycytominer/ 2022-06-17T23:05:34,062 Given no hashes to check 1 links for project 'pycytominer': discarding no candidates 2022-06-17T23:05:34,094 Collecting pycytominer==0.2.0 2022-06-17T23:05:34,098 Created temporary directory: /tmp/pip-unpack-plbzb2_w 2022-06-17T23:05:34,191 Downloading pycytominer-0.2.0.tar.gz (62 kB) 2022-06-17T23:05:34,546 Added pycytominer==0.2.0 from https://files.pythonhosted.org/packages/9f/9f/52c4b2c48dbb13ff9355c3d482a3396a4ecf3ea6c74ca7b77c3ee5ce5b02/pycytominer-0.2.0.tar.gz#sha256=3f64cc584b50c80bd2141aab9b3acd77dbd1b651f3764b0d2e03bc963484f1bf to build tracker '/tmp/pip-build-tracker-mqkhxes4' 2022-06-17T23:05:34,550 Running setup.py (path:/tmp/pip-wheel-oj7w0wqj/pycytominer_1ad4f9eb75154506b05a89fb624a8916/setup.py) egg_info for package pycytominer 2022-06-17T23:05:34,551 Created temporary directory: /tmp/pip-pip-egg-info-qbqhw3fj 2022-06-17T23:05:34,552 Preparing metadata (setup.py): started 2022-06-17T23:05:34,554 Running command python setup.py egg_info 2022-06-17T23:05:42,335 {'__builtins__': {'__name__': 'builtins', '__doc__': "Built-in functions, exceptions, and other objects.\n\nNoteworthy: None is the `nil' object; Ellipsis represents `...' in slices.", '__package__': '', '__loader__': , '__spec__': ModuleSpec(name='builtins', loader=), '__build_class__': , '__import__': , 'abs': , 'all': , 'any': , 'ascii': , 'bin': , 'breakpoint': , 'callable': , 'chr': , 'compile': , 'delattr': , 'dir': , 'divmod': , 'eval': , 'exec': , 'format': , 'getattr': , 'globals': , 'hasattr': , 'hash': , 'hex': , 'id': , 'input': , 'isinstance': , 'issubclass': , 'iter': , 'len': , 'locals': , 'max': , 'min': , 'next': , 'oct': , 'ord': , 'pow': , 'print': , 'repr': , 'round': , 'setattr': , 'sorted': , 'sum': , 'vars': , 'None': None, 'Ellipsis': Ellipsis, 'NotImplemented': NotImplemented, 'False': False, 'True': True, 'bool': , 'memoryview': , 'bytearray': , 'bytes': , 'classmethod': , 'complex': , 'dict': , 'enumerate': , 'filter': , 'float': , 'frozenset': , 'property': , 'int': , 'list': , 'map': , 'object': , 'range': , 'reversed': , 'set': , 'slice': , 'staticmethod': , 'str': , 'super': , 'tuple': , 'type': , 'zip': , '__debug__': True, 'BaseException': , 'Exception': , 'TypeError': , 'StopAsyncIteration': , 'StopIteration': , 'GeneratorExit': , 'SystemExit': , 'KeyboardInterrupt': , 'ImportError': , 'ModuleNotFoundError': , 'OSError': , 'EnvironmentError': , 'IOError': , 'EOFError': , 'RuntimeError': , 'RecursionError': , 'NotImplementedError': , 'NameError': , 'UnboundLocalError': , 'AttributeError': , 'SyntaxError': , 'IndentationError': , 'TabError': , 'LookupError': , 'IndexError': , 'KeyError': , 'ValueError': , 'UnicodeError': , 'UnicodeEncodeError': , 'UnicodeDecodeError': , 'UnicodeTranslateError': , 'AssertionError': , 'ArithmeticError': , 'FloatingPointError': , 'OverflowError': , 'ZeroDivisionError': , 'SystemError': , 'ReferenceError': , 'MemoryError': , 'BufferError': , 'Warning': , 'UserWarning': , 'DeprecationWarning': , 'PendingDeprecationWarning': , 'SyntaxWarning': , 'RuntimeWarning': , 'FutureWarning': , 'ImportWarning': , 'UnicodeWarning': , 'BytesWarning': , 'ResourceWarning': , 'ConnectionError': , 'BlockingIOError': , 'BrokenPipeError': , 'ChildProcessError': , 'ConnectionAbortedError': , 'ConnectionRefusedError': , 'ConnectionResetError': , 'FileExistsError': , 'FileNotFoundError': , 'IsADirectoryError': , 'NotADirectoryError': , 'InterruptedError': , 'PermissionError': , 'ProcessLookupError': , 'TimeoutError': , 'open': , 'quit': Use quit() or Ctrl-D (i.e. EOF) to exit, 'exit': Use exit() or Ctrl-D (i.e. EOF) to exit, 'copyright': Copyright (c) 2001-2019 Python Software Foundation. 2022-06-17T23:05:42,337 All Rights Reserved. 2022-06-17T23:05:42,338 Copyright (c) 2000 BeOpen.com. 2022-06-17T23:05:42,338 All Rights Reserved. 2022-06-17T23:05:42,339 Copyright (c) 1995-2001 Corporation for National Research Initiatives. 2022-06-17T23:05:42,339 All Rights Reserved. 2022-06-17T23:05:42,340 Copyright (c) 1991-1995 Stichting Mathematisch Centrum, Amsterdam. 2022-06-17T23:05:42,340 All Rights Reserved., 'credits': Thanks to CWI, CNRI, BeOpen.com, Zope Corporation and a cast of thousands 2022-06-17T23:05:42,340 for supporting Python development. See www.python.org for more information., 'license': Type license() to see the full license text, 'help': Type help() for interactive help, or help(object) for help about object.}, '__project__': 'pycytominer', '__version__': '0.2.0', '__license__': 'BSD 3-Clause License'} 2022-06-17T23:05:42,341 running egg_info 2022-06-17T23:05:42,341 creating /tmp/pip-pip-egg-info-qbqhw3fj/pycytominer.egg-info 2022-06-17T23:05:42,987 writing /tmp/pip-pip-egg-info-qbqhw3fj/pycytominer.egg-info/PKG-INFO 2022-06-17T23:05:43,574 writing dependency_links to /tmp/pip-pip-egg-info-qbqhw3fj/pycytominer.egg-info/dependency_links.txt 2022-06-17T23:05:46,532 writing requirements to /tmp/pip-pip-egg-info-qbqhw3fj/pycytominer.egg-info/requires.txt 2022-06-17T23:05:47,121 writing top-level names to /tmp/pip-pip-egg-info-qbqhw3fj/pycytominer.egg-info/top_level.txt 2022-06-17T23:05:47,123 writing manifest file '/tmp/pip-pip-egg-info-qbqhw3fj/pycytominer.egg-info/SOURCES.txt' 2022-06-17T23:05:47,918 reading manifest file '/tmp/pip-pip-egg-info-qbqhw3fj/pycytominer.egg-info/SOURCES.txt' 2022-06-17T23:05:47,921 reading manifest template 'MANIFEST.in' 2022-06-17T23:05:47,925 adding license file 'LICENSE.md' 2022-06-17T23:05:47,934 writing manifest file '/tmp/pip-pip-egg-info-qbqhw3fj/pycytominer.egg-info/SOURCES.txt' 2022-06-17T23:05:48,152 Preparing metadata (setup.py): finished with status 'done' 2022-06-17T23:05:48,163 Source in /tmp/pip-wheel-oj7w0wqj/pycytominer_1ad4f9eb75154506b05a89fb624a8916 has version 0.2.0, which satisfies requirement pycytominer==0.2.0 from https://files.pythonhosted.org/packages/9f/9f/52c4b2c48dbb13ff9355c3d482a3396a4ecf3ea6c74ca7b77c3ee5ce5b02/pycytominer-0.2.0.tar.gz#sha256=3f64cc584b50c80bd2141aab9b3acd77dbd1b651f3764b0d2e03bc963484f1bf 2022-06-17T23:05:48,165 Removed pycytominer==0.2.0 from https://files.pythonhosted.org/packages/9f/9f/52c4b2c48dbb13ff9355c3d482a3396a4ecf3ea6c74ca7b77c3ee5ce5b02/pycytominer-0.2.0.tar.gz#sha256=3f64cc584b50c80bd2141aab9b3acd77dbd1b651f3764b0d2e03bc963484f1bf from build tracker '/tmp/pip-build-tracker-mqkhxes4' 2022-06-17T23:05:48,178 Created temporary directory: /tmp/pip-unpack-s16j919_ 2022-06-17T23:05:48,179 Building wheels for collected packages: pycytominer 2022-06-17T23:05:48,188 Created temporary directory: /tmp/pip-wheel-hc8iyulg 2022-06-17T23:05:48,189 Building wheel for pycytominer (setup.py): started 2022-06-17T23:05:48,191 Destination directory: /tmp/pip-wheel-hc8iyulg 2022-06-17T23:05:48,191 Running command python setup.py bdist_wheel 2022-06-17T23:05:50,163 {'__builtins__': {'__name__': 'builtins', '__doc__': "Built-in functions, exceptions, and other objects.\n\nNoteworthy: None is the `nil' object; Ellipsis represents `...' in slices.", '__package__': '', '__loader__': , '__spec__': ModuleSpec(name='builtins', loader=), '__build_class__': , '__import__': , 'abs': , 'all': , 'any': , 'ascii': , 'bin': , 'breakpoint': , 'callable': , 'chr': , 'compile': , 'delattr': , 'dir': , 'divmod': , 'eval': , 'exec': , 'format': , 'getattr': , 'globals': , 'hasattr': , 'hash': , 'hex': , 'id': , 'input': , 'isinstance': , 'issubclass': , 'iter': , 'len': , 'locals': , 'max': , 'min': , 'next': , 'oct': , 'ord': , 'pow': , 'print': , 'repr': , 'round': , 'setattr': , 'sorted': , 'sum': , 'vars': , 'None': None, 'Ellipsis': Ellipsis, 'NotImplemented': NotImplemented, 'False': False, 'True': True, 'bool': , 'memoryview': , 'bytearray': , 'bytes': , 'classmethod': , 'complex': , 'dict': , 'enumerate': , 'filter': , 'float': , 'frozenset': , 'property': , 'int': , 'list': , 'map': , 'object': , 'range': , 'reversed': , 'set': , 'slice': , 'staticmethod': , 'str': , 'super': , 'tuple': , 'type': , 'zip': , '__debug__': True, 'BaseException': , 'Exception': , 'TypeError': , 'StopAsyncIteration': , 'StopIteration': , 'GeneratorExit': , 'SystemExit': , 'KeyboardInterrupt': , 'ImportError': , 'ModuleNotFoundError': , 'OSError': , 'EnvironmentError': , 'IOError': , 'EOFError': , 'RuntimeError': , 'RecursionError': , 'NotImplementedError': , 'NameError': , 'UnboundLocalError': , 'AttributeError': , 'SyntaxError': , 'IndentationError': , 'TabError': , 'LookupError': , 'IndexError': , 'KeyError': , 'ValueError': , 'UnicodeError': , 'UnicodeEncodeError': , 'UnicodeDecodeError': , 'UnicodeTranslateError': , 'AssertionError': , 'ArithmeticError': , 'FloatingPointError': , 'OverflowError': , 'ZeroDivisionError': , 'SystemError': , 'ReferenceError': , 'MemoryError': , 'BufferError': , 'Warning': , 'UserWarning': , 'DeprecationWarning': , 'PendingDeprecationWarning': , 'SyntaxWarning': , 'RuntimeWarning': , 'FutureWarning': , 'ImportWarning': , 'UnicodeWarning': , 'BytesWarning': , 'ResourceWarning': , 'ConnectionError': , 'BlockingIOError': , 'BrokenPipeError': , 'ChildProcessError': , 'ConnectionAbortedError': , 'ConnectionRefusedError': , 'ConnectionResetError': , 'FileExistsError': , 'FileNotFoundError': , 'IsADirectoryError': , 'NotADirectoryError': , 'InterruptedError': , 'PermissionError': , 'ProcessLookupError': , 'TimeoutError': , 'open': , 'quit': Use quit() or Ctrl-D (i.e. EOF) to exit, 'exit': Use exit() or Ctrl-D (i.e. EOF) to exit, 'copyright': Copyright (c) 2001-2019 Python Software Foundation. 2022-06-17T23:05:50,164 All Rights Reserved. 2022-06-17T23:05:50,165 Copyright (c) 2000 BeOpen.com. 2022-06-17T23:05:50,166 All Rights Reserved. 2022-06-17T23:05:50,166 Copyright (c) 1995-2001 Corporation for National Research Initiatives. 2022-06-17T23:05:50,167 All Rights Reserved. 2022-06-17T23:05:50,167 Copyright (c) 1991-1995 Stichting Mathematisch Centrum, Amsterdam. 2022-06-17T23:05:50,167 All Rights Reserved., 'credits': Thanks to CWI, CNRI, BeOpen.com, Zope Corporation and a cast of thousands 2022-06-17T23:05:50,168 for supporting Python development. See www.python.org for more information., 'license': Type license() to see the full license text, 'help': Type help() for interactive help, or help(object) for help about object.}, '__project__': 'pycytominer', '__version__': '0.2.0', '__license__': 'BSD 3-Clause License'} 2022-06-17T23:05:55,403 running bdist_wheel 2022-06-17T23:05:55,567 running build 2022-06-17T23:05:55,568 running build_py 2022-06-17T23:05:56,229 creating build 2022-06-17T23:05:56,229 creating build/lib 2022-06-17T23:05:56,231 creating build/lib/pycytominer 2022-06-17T23:05:56,233 copying pycytominer/aggregate.py -> build/lib/pycytominer 2022-06-17T23:05:56,238 copying pycytominer/feature_select.py -> build/lib/pycytominer 2022-06-17T23:05:56,242 copying pycytominer/normalize.py -> build/lib/pycytominer 2022-06-17T23:05:56,247 copying pycytominer/annotate.py -> build/lib/pycytominer 2022-06-17T23:05:56,251 copying pycytominer/consensus.py -> build/lib/pycytominer 2022-06-17T23:05:56,255 copying pycytominer/__about__.py -> build/lib/pycytominer 2022-06-17T23:05:56,258 copying pycytominer/__init__.py -> build/lib/pycytominer 2022-06-17T23:05:56,264 creating build/lib/pycytominer/tests 2022-06-17T23:05:56,265 copying pycytominer/tests/test_consensus.py -> build/lib/pycytominer/tests 2022-06-17T23:05:56,270 copying pycytominer/tests/test_normalize.py -> build/lib/pycytominer/tests 2022-06-17T23:05:56,275 copying pycytominer/tests/test_annotate.py -> build/lib/pycytominer/tests 2022-06-17T23:05:56,278 copying pycytominer/tests/test_aggregate.py -> build/lib/pycytominer/tests 2022-06-17T23:05:56,283 copying pycytominer/tests/test_feature_select.py -> build/lib/pycytominer/tests 2022-06-17T23:05:56,287 copying pycytominer/tests/__init__.py -> build/lib/pycytominer/tests 2022-06-17T23:05:56,292 creating build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,294 copying pycytominer/cyto_utils/modz.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,299 copying pycytominer/cyto_utils/DeepProfiler_processing.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,303 copying pycytominer/cyto_utils/output.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,307 copying pycytominer/cyto_utils/features.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,311 copying pycytominer/cyto_utils/collate_cmd.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,314 copying pycytominer/cyto_utils/cells.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,320 copying pycytominer/cyto_utils/collate.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,324 copying pycytominer/cyto_utils/__init__.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,328 copying pycytominer/cyto_utils/util.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,332 copying pycytominer/cyto_utils/annotate_custom.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,336 copying pycytominer/cyto_utils/write_gct.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,339 copying pycytominer/cyto_utils/load.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,343 copying pycytominer/cyto_utils/single_cell_ingest_utils.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,347 copying pycytominer/cyto_utils/cp_image_features.py -> build/lib/pycytominer/cyto_utils 2022-06-17T23:05:56,352 creating build/lib/pycytominer/operations 2022-06-17T23:05:56,354 copying pycytominer/operations/get_na_columns.py -> build/lib/pycytominer/operations 2022-06-17T23:05:56,358 copying pycytominer/operations/correlation_threshold.py -> build/lib/pycytominer/operations 2022-06-17T23:05:56,362 copying pycytominer/operations/variance_threshold.py -> build/lib/pycytominer/operations 2022-06-17T23:05:56,366 copying pycytominer/operations/transform.py -> build/lib/pycytominer/operations 2022-06-17T23:05:56,370 copying pycytominer/operations/__init__.py -> build/lib/pycytominer/operations 2022-06-17T23:05:56,373 copying pycytominer/operations/noise_removal.py -> build/lib/pycytominer/operations 2022-06-17T23:05:56,378 creating build/lib/pycytominer/tests/test_operations 2022-06-17T23:05:56,380 copying pycytominer/tests/test_operations/test_transform.py -> build/lib/pycytominer/tests/test_operations 2022-06-17T23:05:56,384 copying pycytominer/tests/test_operations/test_variance_threshold.py -> build/lib/pycytominer/tests/test_operations 2022-06-17T23:05:56,387 copying pycytominer/tests/test_operations/test_get_na_columns.py -> build/lib/pycytominer/tests/test_operations 2022-06-17T23:05:56,391 copying pycytominer/tests/test_operations/test_correlation_threshold.py -> build/lib/pycytominer/tests/test_operations 2022-06-17T23:05:56,394 copying pycytominer/tests/test_operations/__init__.py -> build/lib/pycytominer/tests/test_operations 2022-06-17T23:05:56,400 creating build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,401 copying pycytominer/tests/test_cyto_utils/test_output.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,406 copying pycytominer/tests/test_cyto_utils/test_modz.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,410 copying pycytominer/tests/test_cyto_utils/test_cells.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,416 copying pycytominer/tests/test_cyto_utils/test_features_util.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,419 copying pycytominer/tests/test_cyto_utils/test_single_cell_ingest_utils.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,423 copying pycytominer/tests/test_cyto_utils/test_feature_blocklist.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,426 copying pycytominer/tests/test_cyto_utils/test_collate.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,430 copying pycytominer/tests/test_cyto_utils/test_write_gct.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,433 copying pycytominer/tests/test_cyto_utils/test_feature_drop_outlier.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,437 copying pycytominer/tests/test_cyto_utils/test_util.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,441 copying pycytominer/tests/test_cyto_utils/test_load.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,445 copying pycytominer/tests/test_cyto_utils/test_feature_infer.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,448 copying pycytominer/tests/test_cyto_utils/test_features_count_na.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,451 copying pycytominer/tests/test_cyto_utils/__init__.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,454 copying pycytominer/tests/test_cyto_utils/test_annotate_custom.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,458 copying pycytominer/tests/test_cyto_utils/test_DeepProfiler_processing.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,461 copying pycytominer/tests/test_cyto_utils/test_cp_image_features.py -> build/lib/pycytominer/tests/test_cyto_utils 2022-06-17T23:05:56,464 running egg_info 2022-06-17T23:05:57,780 writing pycytominer.egg-info/PKG-INFO 2022-06-17T23:05:58,382 writing dependency_links to pycytominer.egg-info/dependency_links.txt 2022-06-17T23:06:01,344 writing requirements to pycytominer.egg-info/requires.txt 2022-06-17T23:06:01,946 writing top-level names to pycytominer.egg-info/top_level.txt 2022-06-17T23:06:02,018 reading manifest file 'pycytominer.egg-info/SOURCES.txt' 2022-06-17T23:06:02,026 reading manifest template 'MANIFEST.in' 2022-06-17T23:06:02,028 adding license file 'LICENSE.md' 2022-06-17T23:06:02,040 writing manifest file 'pycytominer.egg-info/SOURCES.txt' 2022-06-17T23:06:02,045 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-17T23:06:02,046 ############################ 2022-06-17T23:06:02,046 # Package would be ignored # 2022-06-17T23:06:02,046 ############################ 2022-06-17T23:06:02,047 Python recognizes 'pycytominer.data' as an importable package, however it is 2022-06-17T23:06:02,047 included in the distribution as "data". 2022-06-17T23:06:02,047 This behavior is likely to change in future versions of setuptools (and 2022-06-17T23:06:02,047 therefore is considered deprecated). 2022-06-17T23:06:02,048 Please make sure that 'pycytominer.data' is included as a package by using 2022-06-17T23:06:02,048 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-17T23:06:02,049 You can read more about "package discovery" and "data files" on setuptools 2022-06-17T23:06:02,049 documentation page. 2022-06-17T23:06:02,050 !! 2022-06-17T23:06:02,051 check.warn(importable) 2022-06-17T23:06:02,052 creating build/lib/pycytominer/data 2022-06-17T23:06:02,052 copying pycytominer/data/blocklist_features.txt -> build/lib/pycytominer/data 2022-06-17T23:06:02,055 copying pycytominer/data/metadata_feature_dictionary.txt -> build/lib/pycytominer/data 2022-06-17T23:06:02,719 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-06-17T23:06:02,719 setuptools.SetuptoolsDeprecationWarning, 2022-06-17T23:06:03,425 installing to build/bdist.linux-armv7l/wheel 2022-06-17T23:06:03,426 running install 2022-06-17T23:06:03,489 running install_lib 2022-06-17T23:06:04,135 creating build/bdist.linux-armv7l 2022-06-17T23:06:04,135 creating build/bdist.linux-armv7l/wheel 2022-06-17T23:06:04,139 creating build/bdist.linux-armv7l/wheel/pycytominer 2022-06-17T23:06:04,141 copying build/lib/pycytominer/aggregate.py -> build/bdist.linux-armv7l/wheel/pycytominer 2022-06-17T23:06:04,145 copying build/lib/pycytominer/feature_select.py -> build/bdist.linux-armv7l/wheel/pycytominer 2022-06-17T23:06:04,149 copying build/lib/pycytominer/normalize.py -> build/bdist.linux-armv7l/wheel/pycytominer 2022-06-17T23:06:04,153 copying build/lib/pycytominer/annotate.py -> build/bdist.linux-armv7l/wheel/pycytominer 2022-06-17T23:06:04,158 creating build/bdist.linux-armv7l/wheel/pycytominer/tests 2022-06-17T23:06:04,160 copying build/lib/pycytominer/tests/test_consensus.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests 2022-06-17T23:06:04,163 copying build/lib/pycytominer/tests/test_normalize.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests 2022-06-17T23:06:04,168 copying build/lib/pycytominer/tests/test_annotate.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests 2022-06-17T23:06:04,171 copying build/lib/pycytominer/tests/test_aggregate.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests 2022-06-17T23:06:04,175 copying build/lib/pycytominer/tests/test_feature_select.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests 2022-06-17T23:06:04,181 creating build/bdist.linux-armv7l/wheel/pycytominer/tests/test_operations 2022-06-17T23:06:04,182 copying build/lib/pycytominer/tests/test_operations/test_transform.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_operations 2022-06-17T23:06:04,186 copying build/lib/pycytominer/tests/test_operations/test_variance_threshold.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_operations 2022-06-17T23:06:04,189 copying build/lib/pycytominer/tests/test_operations/test_get_na_columns.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_operations 2022-06-17T23:06:04,192 copying build/lib/pycytominer/tests/test_operations/test_correlation_threshold.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_operations 2022-06-17T23:06:04,196 copying build/lib/pycytominer/tests/test_operations/__init__.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_operations 2022-06-17T23:06:04,199 copying build/lib/pycytominer/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests 2022-06-17T23:06:04,202 creating build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,204 copying build/lib/pycytominer/tests/test_cyto_utils/test_output.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,208 copying build/lib/pycytominer/tests/test_cyto_utils/test_modz.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,212 copying build/lib/pycytominer/tests/test_cyto_utils/test_cells.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,217 copying build/lib/pycytominer/tests/test_cyto_utils/test_features_util.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,220 copying build/lib/pycytominer/tests/test_cyto_utils/test_single_cell_ingest_utils.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,223 copying build/lib/pycytominer/tests/test_cyto_utils/test_feature_blocklist.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,226 copying build/lib/pycytominer/tests/test_cyto_utils/test_collate.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,230 copying build/lib/pycytominer/tests/test_cyto_utils/test_write_gct.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,234 copying build/lib/pycytominer/tests/test_cyto_utils/test_feature_drop_outlier.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,237 copying build/lib/pycytominer/tests/test_cyto_utils/test_util.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,241 copying build/lib/pycytominer/tests/test_cyto_utils/test_load.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,246 copying build/lib/pycytominer/tests/test_cyto_utils/test_feature_infer.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,249 copying build/lib/pycytominer/tests/test_cyto_utils/test_features_count_na.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,252 copying build/lib/pycytominer/tests/test_cyto_utils/__init__.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,255 copying build/lib/pycytominer/tests/test_cyto_utils/test_annotate_custom.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,258 copying build/lib/pycytominer/tests/test_cyto_utils/test_DeepProfiler_processing.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,261 copying build/lib/pycytominer/tests/test_cyto_utils/test_cp_image_features.py -> build/bdist.linux-armv7l/wheel/pycytominer/tests/test_cyto_utils 2022-06-17T23:06:04,266 creating build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,268 copying build/lib/pycytominer/cyto_utils/modz.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,272 copying build/lib/pycytominer/cyto_utils/DeepProfiler_processing.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,276 copying build/lib/pycytominer/cyto_utils/output.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,279 copying build/lib/pycytominer/cyto_utils/features.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,282 copying build/lib/pycytominer/cyto_utils/collate_cmd.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,286 copying build/lib/pycytominer/cyto_utils/cells.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,291 copying build/lib/pycytominer/cyto_utils/collate.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,295 copying build/lib/pycytominer/cyto_utils/__init__.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,298 copying build/lib/pycytominer/cyto_utils/util.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,302 copying build/lib/pycytominer/cyto_utils/annotate_custom.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,305 copying build/lib/pycytominer/cyto_utils/write_gct.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,308 copying build/lib/pycytominer/cyto_utils/load.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,312 copying build/lib/pycytominer/cyto_utils/single_cell_ingest_utils.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,315 copying build/lib/pycytominer/cyto_utils/cp_image_features.py -> build/bdist.linux-armv7l/wheel/pycytominer/cyto_utils 2022-06-17T23:06:04,318 copying build/lib/pycytominer/consensus.py -> build/bdist.linux-armv7l/wheel/pycytominer 2022-06-17T23:06:04,323 creating build/bdist.linux-armv7l/wheel/pycytominer/data 2022-06-17T23:06:04,324 copying build/lib/pycytominer/data/metadata_feature_dictionary.txt -> build/bdist.linux-armv7l/wheel/pycytominer/data 2022-06-17T23:06:04,328 copying build/lib/pycytominer/data/blocklist_features.txt -> build/bdist.linux-armv7l/wheel/pycytominer/data 2022-06-17T23:06:04,331 copying build/lib/pycytominer/__about__.py -> build/bdist.linux-armv7l/wheel/pycytominer 2022-06-17T23:06:04,334 copying build/lib/pycytominer/__init__.py -> build/bdist.linux-armv7l/wheel/pycytominer 2022-06-17T23:06:04,338 creating build/bdist.linux-armv7l/wheel/pycytominer/operations 2022-06-17T23:06:04,339 copying build/lib/pycytominer/operations/get_na_columns.py -> build/bdist.linux-armv7l/wheel/pycytominer/operations 2022-06-17T23:06:04,342 copying build/lib/pycytominer/operations/correlation_threshold.py -> build/bdist.linux-armv7l/wheel/pycytominer/operations 2022-06-17T23:06:04,345 copying build/lib/pycytominer/operations/variance_threshold.py -> build/bdist.linux-armv7l/wheel/pycytominer/operations 2022-06-17T23:06:04,349 copying build/lib/pycytominer/operations/transform.py -> build/bdist.linux-armv7l/wheel/pycytominer/operations 2022-06-17T23:06:04,352 copying build/lib/pycytominer/operations/__init__.py -> build/bdist.linux-armv7l/wheel/pycytominer/operations 2022-06-17T23:06:04,356 copying build/lib/pycytominer/operations/noise_removal.py -> build/bdist.linux-armv7l/wheel/pycytominer/operations 2022-06-17T23:06:04,359 running install_egg_info 2022-06-17T23:06:05,017 Copying pycytominer.egg-info to build/bdist.linux-armv7l/wheel/pycytominer-0.2.0-py3.7.egg-info 2022-06-17T23:06:05,036 running install_scripts 2022-06-17T23:06:05,179 adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") 2022-06-17T23:06:05,187 creating build/bdist.linux-armv7l/wheel/pycytominer-0.2.0.dist-info/WHEEL 2022-06-17T23:06:05,191 creating '/tmp/pip-wheel-hc8iyulg/pycytominer-0.2.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-06-17T23:06:05,196 adding 'pycytominer/__about__.py' 2022-06-17T23:06:05,198 adding 'pycytominer/__init__.py' 2022-06-17T23:06:05,200 adding 'pycytominer/aggregate.py' 2022-06-17T23:06:05,203 adding 'pycytominer/annotate.py' 2022-06-17T23:06:05,206 adding 'pycytominer/consensus.py' 2022-06-17T23:06:05,210 adding 'pycytominer/feature_select.py' 2022-06-17T23:06:05,213 adding 'pycytominer/normalize.py' 2022-06-17T23:06:05,218 adding 'pycytominer/cyto_utils/DeepProfiler_processing.py' 2022-06-17T23:06:05,221 adding 'pycytominer/cyto_utils/__init__.py' 2022-06-17T23:06:05,223 adding 'pycytominer/cyto_utils/annotate_custom.py' 2022-06-17T23:06:05,232 adding 'pycytominer/cyto_utils/cells.py' 2022-06-17T23:06:05,236 adding 'pycytominer/cyto_utils/collate.py' 2022-06-17T23:06:05,239 adding 'pycytominer/cyto_utils/collate_cmd.py' 2022-06-17T23:06:05,242 adding 'pycytominer/cyto_utils/cp_image_features.py' 2022-06-17T23:06:05,245 adding 'pycytominer/cyto_utils/features.py' 2022-06-17T23:06:05,248 adding 'pycytominer/cyto_utils/load.py' 2022-06-17T23:06:05,251 adding 'pycytominer/cyto_utils/modz.py' 2022-06-17T23:06:05,253 adding 'pycytominer/cyto_utils/output.py' 2022-06-17T23:06:05,256 adding 'pycytominer/cyto_utils/single_cell_ingest_utils.py' 2022-06-17T23:06:05,260 adding 'pycytominer/cyto_utils/util.py' 2022-06-17T23:06:05,263 adding 'pycytominer/cyto_utils/write_gct.py' 2022-06-17T23:06:05,266 adding 'pycytominer/data/blocklist_features.txt' 2022-06-17T23:06:05,268 adding 'pycytominer/data/metadata_feature_dictionary.txt' 2022-06-17T23:06:05,271 adding 'pycytominer/operations/__init__.py' 2022-06-17T23:06:05,274 adding 'pycytominer/operations/correlation_threshold.py' 2022-06-17T23:06:05,277 adding 'pycytominer/operations/get_na_columns.py' 2022-06-17T23:06:05,279 adding 'pycytominer/operations/noise_removal.py' 2022-06-17T23:06:05,282 adding 'pycytominer/operations/transform.py' 2022-06-17T23:06:05,285 adding 'pycytominer/operations/variance_threshold.py' 2022-06-17T23:06:05,288 adding 'pycytominer/tests/__init__.py' 2022-06-17T23:06:05,291 adding 'pycytominer/tests/test_aggregate.py' 2022-06-17T23:06:05,294 adding 'pycytominer/tests/test_annotate.py' 2022-06-17T23:06:05,296 adding 'pycytominer/tests/test_consensus.py' 2022-06-17T23:06:05,300 adding 'pycytominer/tests/test_feature_select.py' 2022-06-17T23:06:05,304 adding 'pycytominer/tests/test_normalize.py' 2022-06-17T23:06:05,308 adding 'pycytominer/tests/test_cyto_utils/__init__.py' 2022-06-17T23:06:05,310 adding 'pycytominer/tests/test_cyto_utils/test_DeepProfiler_processing.py' 2022-06-17T23:06:05,314 adding 'pycytominer/tests/test_cyto_utils/test_annotate_custom.py' 2022-06-17T23:06:05,320 adding 'pycytominer/tests/test_cyto_utils/test_cells.py' 2022-06-17T23:06:05,323 adding 'pycytominer/tests/test_cyto_utils/test_collate.py' 2022-06-17T23:06:05,326 adding 'pycytominer/tests/test_cyto_utils/test_cp_image_features.py' 2022-06-17T23:06:05,328 adding 'pycytominer/tests/test_cyto_utils/test_feature_blocklist.py' 2022-06-17T23:06:05,330 adding 'pycytominer/tests/test_cyto_utils/test_feature_drop_outlier.py' 2022-06-17T23:06:05,333 adding 'pycytominer/tests/test_cyto_utils/test_feature_infer.py' 2022-06-17T23:06:05,335 adding 'pycytominer/tests/test_cyto_utils/test_features_count_na.py' 2022-06-17T23:06:05,337 adding 'pycytominer/tests/test_cyto_utils/test_features_util.py' 2022-06-17T23:06:05,340 adding 'pycytominer/tests/test_cyto_utils/test_load.py' 2022-06-17T23:06:05,343 adding 'pycytominer/tests/test_cyto_utils/test_modz.py' 2022-06-17T23:06:05,346 adding 'pycytominer/tests/test_cyto_utils/test_output.py' 2022-06-17T23:06:05,348 adding 'pycytominer/tests/test_cyto_utils/test_single_cell_ingest_utils.py' 2022-06-17T23:06:05,351 adding 'pycytominer/tests/test_cyto_utils/test_util.py' 2022-06-17T23:06:05,355 adding 'pycytominer/tests/test_cyto_utils/test_write_gct.py' 2022-06-17T23:06:05,358 adding 'pycytominer/tests/test_operations/__init__.py' 2022-06-17T23:06:05,360 adding 'pycytominer/tests/test_operations/test_correlation_threshold.py' 2022-06-17T23:06:05,362 adding 'pycytominer/tests/test_operations/test_get_na_columns.py' 2022-06-17T23:06:05,365 adding 'pycytominer/tests/test_operations/test_transform.py' 2022-06-17T23:06:05,368 adding 'pycytominer/tests/test_operations/test_variance_threshold.py' 2022-06-17T23:06:05,372 adding 'pycytominer-0.2.0.dist-info/LICENSE.md' 2022-06-17T23:06:05,375 adding 'pycytominer-0.2.0.dist-info/METADATA' 2022-06-17T23:06:05,377 adding 'pycytominer-0.2.0.dist-info/WHEEL' 2022-06-17T23:06:05,378 adding 'pycytominer-0.2.0.dist-info/top_level.txt' 2022-06-17T23:06:05,380 adding 'pycytominer-0.2.0.dist-info/RECORD' 2022-06-17T23:06:05,387 removing build/bdist.linux-armv7l/wheel 2022-06-17T23:06:05,652 Building wheel for pycytominer (setup.py): finished with status 'done' 2022-06-17T23:06:05,661 Created wheel for pycytominer: filename=pycytominer-0.2.0-py2.py3-none-any.whl size=85426 sha256=3a44c8de0016130818e19e6dadc2cbb7a42bbac3c810fb4ec1bcab0fe988c7e4 2022-06-17T23:06:05,663 Stored in directory: /tmp/pip-ephem-wheel-cache-8q73f7tx/wheels/cb/02/77/3792efacf2189e37bbbdb00689e5fef62db02b312734c49c65 2022-06-17T23:06:05,691 Successfully built pycytominer 2022-06-17T23:06:05,705 Removed build tracker: '/tmp/pip-build-tracker-mqkhxes4'