2022-06-28T17:59:15,432 Created temporary directory: /tmp/pip-ephem-wheel-cache-a47mo1fs
2022-06-28T17:59:15,438 Created temporary directory: /tmp/pip-build-tracker-ms5cwkkr
2022-06-28T17:59:15,439 Initialized build tracking at /tmp/pip-build-tracker-ms5cwkkr
2022-06-28T17:59:15,439 Created build tracker: /tmp/pip-build-tracker-ms5cwkkr
2022-06-28T17:59:15,439 Entered build tracker: /tmp/pip-build-tracker-ms5cwkkr
2022-06-28T17:59:15,441 Created temporary directory: /tmp/pip-wheel-z0w5yqtn
2022-06-28T17:59:15,504 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-06-28T17:59:15,512 2 location(s) to search for versions of celltk2:
2022-06-28T17:59:15,512 * https://pypi.org/simple/celltk2/
2022-06-28T17:59:15,512 * https://www.piwheels.org/simple/celltk2/
2022-06-28T17:59:15,513 Fetching project page and analyzing links: https://pypi.org/simple/celltk2/
2022-06-28T17:59:15,514 Getting page https://pypi.org/simple/celltk2/
2022-06-28T17:59:15,518 Found index url https://pypi.org/simple
2022-06-28T17:59:15,631   Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/96/ef/2fa5812a59f2c7c6f4acb9f3ed5c532dc6b323a51ac15c9365f0fbf5ff5f/celltk2-0.4.0-py3-none-any.whl#sha256=389b63524bfb3902401aef3812e02a8598ebf60b565adc714808642299e002a6 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8)
2022-06-28T17:59:15,632   Found link https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0
2022-06-28T17:59:15,633 Fetching project page and analyzing links: https://www.piwheels.org/simple/celltk2/
2022-06-28T17:59:15,634 Getting page https://www.piwheels.org/simple/celltk2/
2022-06-28T17:59:15,636 Found index url https://www.piwheels.org/simple
2022-06-28T17:59:15,868 Skipping link: not a file: https://www.piwheels.org/simple/celltk2/
2022-06-28T17:59:15,869 Skipping link: not a file: https://pypi.org/simple/celltk2/
2022-06-28T17:59:15,913 Given no hashes to check 1 links for project 'celltk2': discarding no candidates
2022-06-28T17:59:15,954 Collecting celltk2==0.4.0
2022-06-28T17:59:15,959   Created temporary directory: /tmp/pip-unpack-0ksbh6r5
2022-06-28T17:59:17,239   Downloading celltk2-0.4.0.tar.gz (7.0 MB)
2022-06-28T17:59:19,812   Added celltk2==0.4.0 from https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed to build tracker '/tmp/pip-build-tracker-ms5cwkkr'
2022-06-28T17:59:19,820   Created temporary directory: /tmp/pip-build-env-0vry7mx3
2022-06-28T17:59:19,841   Created temporary directory: /tmp/pip-standalone-pip-12ia84c0
2022-06-28T17:59:22,004   Installing build dependencies: started
2022-06-28T17:59:22,007   Running command pip subprocess to install build dependencies
2022-06-28T17:59:33,362   Using pip 22.1.2 from /tmp/pip-standalone-pip-12ia84c0/__env_pip__.zip/pip (python 3.9)
2022-06-28T17:59:34,849   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-06-28T17:59:38,782   Collecting setuptools>=42
2022-06-28T17:59:39,059     Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.6.0-py3-none-any.whl (1.2 MB)
2022-06-28T17:59:43,111   Installing collected packages: setuptools
2022-06-28T17:59:48,505   Successfully installed setuptools-62.6.0
2022-06-28T17:59:49,169   Installing build dependencies: finished with status 'done'
2022-06-28T17:59:49,197   Getting requirements to build wheel: started
2022-06-28T17:59:49,199   Running command Getting requirements to build wheel
2022-06-28T17:59:55,253   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases.
2022-06-28T17:59:55,255     warnings.warn(msg, _ExperimentalProjectMetadata)
2022-06-28T17:59:55,568   /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !!


2022-06-28T17:59:55,569       ##########################################################################
2022-06-28T17:59:55,569       # configuration would be ignored/result in error due to `pyproject.toml` #
2022-06-28T17:59:55,570       ##########################################################################

2022-06-28T17:59:55,570       The following seems to be defined outside of `pyproject.toml`:

2022-06-28T17:59:55,571       `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'Bottleneck>=1.3.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'umap-learn>=0.5.3', 'hdbscan~=0.8.28', 'seaborn~=0.11.2']`

2022-06-28T17:59:55,572       According to the spec (see the link bellow), however, setuptools CANNOT
2022-06-28T17:59:55,572       consider this value unless 'dependencies' is listed as `dynamic`.

2022-06-28T17:59:55,572       https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2022-06-28T17:59:55,573       For the time being, `setuptools` will still consider the given value (as a
2022-06-28T17:59:55,574       **transitional** measure), but please note that future releases of setuptools will
2022-06-28T17:59:55,574       follow strictly the standard.

2022-06-28T17:59:55,575       To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively
2022-06-28T17:59:55,575       remove the `[project]` table from your file and rely entirely on other means of
2022-06-28T17:59:55,575       configuration.


2022-06-28T17:59:55,576   !!

2022-06-28T17:59:55,577     warnings.warn(msg, _WouldIgnoreField)
2022-06-28T17:59:57,192   running egg_info
2022-06-28T17:59:57,789   writing celltk2.egg-info/PKG-INFO
2022-06-28T17:59:58,412   writing dependency_links to celltk2.egg-info/dependency_links.txt
2022-06-28T18:00:01,239   writing requirements to celltk2.egg-info/requires.txt
2022-06-28T18:00:01,803   writing top-level names to celltk2.egg-info/top_level.txt
2022-06-28T18:00:02,446   package init file 'celltk/core/__init__.py' not found (or not a regular file)
2022-06-28T18:00:02,495   reading manifest file 'celltk2.egg-info/SOURCES.txt'
2022-06-28T18:00:02,503   adding license file 'LICENSE'
2022-06-28T18:00:02,512   writing manifest file 'celltk2.egg-info/SOURCES.txt'
2022-06-28T18:00:02,816   Getting requirements to build wheel: finished with status 'done'
2022-06-28T18:00:02,842   Created temporary directory: /tmp/pip-standalone-pip-5dwb21ao
2022-06-28T18:00:05,029   Installing backend dependencies: started
2022-06-28T18:00:05,031   Running command pip subprocess to install backend dependencies
2022-06-28T18:00:16,271   Using pip 22.1.2 from /tmp/pip-standalone-pip-5dwb21ao/__env_pip__.zip/pip (python 3.9)
2022-06-28T18:00:17,735   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-06-28T18:00:18,668   Collecting wheel
2022-06-28T18:00:18,703     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-06-28T18:00:22,051   Installing collected packages: wheel
2022-06-28T18:00:22,337     Creating /tmp/pip-build-env-0vry7mx3/normal/bin
2022-06-28T18:00:22,341     changing mode of /tmp/pip-build-env-0vry7mx3/normal/bin/wheel to 755
2022-06-28T18:00:22,368   Successfully installed wheel-0.37.1
2022-06-28T18:00:22,966   Installing backend dependencies: finished with status 'done'
2022-06-28T18:00:22,987   Created temporary directory: /tmp/pip-modern-metadata-nw3i6uya
2022-06-28T18:00:22,994   Preparing metadata (pyproject.toml): started
2022-06-28T18:00:22,996   Running command Preparing metadata (pyproject.toml)
2022-06-28T18:00:28,897   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases.
2022-06-28T18:00:28,899     warnings.warn(msg, _ExperimentalProjectMetadata)
2022-06-28T18:00:29,215   /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !!


2022-06-28T18:00:29,216       ##########################################################################
2022-06-28T18:00:29,217       # configuration would be ignored/result in error due to `pyproject.toml` #
2022-06-28T18:00:29,217       ##########################################################################

2022-06-28T18:00:29,218       The following seems to be defined outside of `pyproject.toml`:

2022-06-28T18:00:29,218       `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'Bottleneck>=1.3.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'umap-learn>=0.5.3', 'hdbscan~=0.8.28', 'seaborn~=0.11.2']`

2022-06-28T18:00:29,219       According to the spec (see the link bellow), however, setuptools CANNOT
2022-06-28T18:00:29,219       consider this value unless 'dependencies' is listed as `dynamic`.

2022-06-28T18:00:29,220       https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2022-06-28T18:00:29,221       For the time being, `setuptools` will still consider the given value (as a
2022-06-28T18:00:29,221       **transitional** measure), but please note that future releases of setuptools will
2022-06-28T18:00:29,221       follow strictly the standard.

2022-06-28T18:00:29,222       To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively
2022-06-28T18:00:29,222       remove the `[project]` table from your file and rely entirely on other means of
2022-06-28T18:00:29,223       configuration.


2022-06-28T18:00:29,223   !!

2022-06-28T18:00:29,224     warnings.warn(msg, _WouldIgnoreField)
2022-06-28T18:00:30,845   running dist_info
2022-06-28T18:00:31,433   creating /tmp/pip-modern-metadata-nw3i6uya/celltk2.egg-info
2022-06-28T18:00:32,074   writing /tmp/pip-modern-metadata-nw3i6uya/celltk2.egg-info/PKG-INFO
2022-06-28T18:00:32,630   writing dependency_links to /tmp/pip-modern-metadata-nw3i6uya/celltk2.egg-info/dependency_links.txt
2022-06-28T18:00:35,398   writing requirements to /tmp/pip-modern-metadata-nw3i6uya/celltk2.egg-info/requires.txt
2022-06-28T18:00:35,953   writing top-level names to /tmp/pip-modern-metadata-nw3i6uya/celltk2.egg-info/top_level.txt
2022-06-28T18:00:35,956   writing manifest file '/tmp/pip-modern-metadata-nw3i6uya/celltk2.egg-info/SOURCES.txt'
2022-06-28T18:00:36,582   package init file 'celltk/core/__init__.py' not found (or not a regular file)
2022-06-28T18:00:36,635   reading manifest file '/tmp/pip-modern-metadata-nw3i6uya/celltk2.egg-info/SOURCES.txt'
2022-06-28T18:00:36,637   adding license file 'LICENSE'
2022-06-28T18:00:36,645   writing manifest file '/tmp/pip-modern-metadata-nw3i6uya/celltk2.egg-info/SOURCES.txt'
2022-06-28T18:00:36,648   creating '/tmp/pip-modern-metadata-nw3i6uya/celltk2-0.4.0.dist-info'
2022-06-28T18:00:36,844   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-06-28T18:00:37,163   Preparing metadata (pyproject.toml): finished with status 'done'
2022-06-28T18:00:37,178   Source in /tmp/pip-wheel-z0w5yqtn/celltk2_9a9fc4d572904eb99aeedca4a2bbb2d8 has version 0.4.0, which satisfies requirement celltk2==0.4.0 from https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed
2022-06-28T18:00:37,180   Removed celltk2==0.4.0 from https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed from build tracker '/tmp/pip-build-tracker-ms5cwkkr'
2022-06-28T18:00:37,194 Created temporary directory: /tmp/pip-unpack-fc4vklsf
2022-06-28T18:00:37,195 Building wheels for collected packages: celltk2
2022-06-28T18:00:37,205   Created temporary directory: /tmp/pip-wheel-ldiwcibk
2022-06-28T18:00:37,205   Destination directory: /tmp/pip-wheel-ldiwcibk
2022-06-28T18:00:37,210   Building wheel for celltk2 (pyproject.toml): started
2022-06-28T18:00:37,212   Running command Building wheel for celltk2 (pyproject.toml)
2022-06-28T18:00:43,205   /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases.
2022-06-28T18:00:43,206     warnings.warn(msg, _ExperimentalProjectMetadata)
2022-06-28T18:00:43,520   /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !!


2022-06-28T18:00:43,521       ##########################################################################
2022-06-28T18:00:43,522       # configuration would be ignored/result in error due to `pyproject.toml` #
2022-06-28T18:00:43,522       ##########################################################################

2022-06-28T18:00:43,523       The following seems to be defined outside of `pyproject.toml`:

2022-06-28T18:00:43,523       `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'Bottleneck>=1.3.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'umap-learn>=0.5.3', 'hdbscan~=0.8.28', 'seaborn~=0.11.2']`

2022-06-28T18:00:43,524       According to the spec (see the link bellow), however, setuptools CANNOT
2022-06-28T18:00:43,524       consider this value unless 'dependencies' is listed as `dynamic`.

2022-06-28T18:00:43,525       https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2022-06-28T18:00:43,526       For the time being, `setuptools` will still consider the given value (as a
2022-06-28T18:00:43,526       **transitional** measure), but please note that future releases of setuptools will
2022-06-28T18:00:43,526       follow strictly the standard.

2022-06-28T18:00:43,527       To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively
2022-06-28T18:00:43,527       remove the `[project]` table from your file and rely entirely on other means of
2022-06-28T18:00:43,528       configuration.


2022-06-28T18:00:43,529   !!

2022-06-28T18:00:43,529     warnings.warn(msg, _WouldIgnoreField)
2022-06-28T18:00:44,639   running bdist_wheel
2022-06-28T18:00:45,325   running build
2022-06-28T18:00:45,325   running build_py
2022-06-28T18:00:45,925   creating build
2022-06-28T18:00:45,926   creating build/lib
2022-06-28T18:00:45,928   creating build/lib/celltk
2022-06-28T18:00:45,929   creating build/lib/celltk/external
2022-06-28T18:00:45,931   creating build/lib/celltk/external/misic
2022-06-28T18:00:45,933   copying celltk/external/misic/misic.py -> build/lib/celltk/external/misic
2022-06-28T18:00:45,938   copying celltk/external/misic/utils.py -> build/lib/celltk/external/misic
2022-06-28T18:00:45,943   copying celltk/external/misic/extras.py -> build/lib/celltk/external/misic
2022-06-28T18:00:45,946   copying celltk/external/misic/__init__.py -> build/lib/celltk/external/misic
2022-06-28T18:00:45,952   creating build/lib/celltk/external/kit_sch_ge
2022-06-28T18:00:45,953   creating build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,956   copying celltk/external/kit_sch_ge/tracker/graph.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,964   copying celltk/external/kit_sch_ge/tracker/export.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,969   copying celltk/external/kit_sch_ge/tracker/split_objects.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,973   copying celltk/external/kit_sch_ge/tracker/utils.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,976   copying celltk/external/kit_sch_ge/tracker/flow.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,980   copying celltk/external/kit_sch_ge/tracker/extract_data.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,983   copying celltk/external/kit_sch_ge/tracker/tracking.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,988   copying celltk/external/kit_sch_ge/tracker/__init__.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,990   copying celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/lib/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:45,999   creating build/lib/celltk/utils
2022-06-28T18:00:46,000   copying celltk/utils/metric_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,004   copying celltk/utils/estimator_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,007   copying celltk/utils/operation_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,013   copying celltk/utils/bayes_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,016   copying celltk/utils/_fastkde.py -> build/lib/celltk/utils
2022-06-28T18:00:46,020   copying celltk/utils/utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,024   copying celltk/utils/slurm_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,030   copying celltk/utils/kit_sch_ge_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,034   copying celltk/utils/filter_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,037   copying celltk/utils/peak_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,042   copying celltk/utils/cli_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,046   copying celltk/utils/process_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,049   copying celltk/utils/plot_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,057   copying celltk/utils/_types.py -> build/lib/celltk/utils
2022-06-28T18:00:46,060   copying celltk/utils/log_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,064   copying celltk/utils/__init__.py -> build/lib/celltk/utils
2022-06-28T18:00:46,066   copying celltk/utils/unet_model.py -> build/lib/celltk/utils
2022-06-28T18:00:46,072   copying celltk/utils/info_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,076   copying celltk/utils/file_utils.py -> build/lib/celltk/utils
2022-06-28T18:00:46,081   copying celltk/evaluate.py -> build/lib/celltk
2022-06-28T18:00:46,085   copying celltk/process.py -> build/lib/celltk
2022-06-28T18:00:46,090   copying celltk/track.py -> build/lib/celltk
2022-06-28T18:00:46,095   copying celltk/segment.py -> build/lib/celltk
2022-06-28T18:00:46,101   copying celltk/__init__.py -> build/lib/celltk
2022-06-28T18:00:46,103   copying celltk/extract.py -> build/lib/celltk
2022-06-28T18:00:46,110   copying celltk/external/kit_sch_ge/setup.py -> build/lib/celltk/external/kit_sch_ge
2022-06-28T18:00:46,113   copying celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/lib/celltk/external/kit_sch_ge
2022-06-28T18:00:46,118   copying celltk/external/kit_sch_ge/run_tracking.py -> build/lib/celltk/external/kit_sch_ge
2022-06-28T18:00:46,121   copying celltk/external/kit_sch_ge/config.py -> build/lib/celltk/external/kit_sch_ge
2022-06-28T18:00:46,125   copying celltk/external/kit_sch_ge/__init__.py -> build/lib/celltk/external/kit_sch_ge
2022-06-28T18:00:46,127   package init file 'celltk/core/__init__.py' not found (or not a regular file)
2022-06-28T18:00:46,129   creating build/lib/celltk/core
2022-06-28T18:00:46,130   copying celltk/core/orchestrator.py -> build/lib/celltk/core
2022-06-28T18:00:46,136   copying celltk/core/arrays.py -> build/lib/celltk/core
2022-06-28T18:00:46,142   copying celltk/core/pipeline.py -> build/lib/celltk/core
2022-06-28T18:00:46,148   copying celltk/core/operation.py -> build/lib/celltk/core
2022-06-28T18:00:46,155   running egg_info
2022-06-28T18:00:47,398   writing celltk2.egg-info/PKG-INFO
2022-06-28T18:00:47,961   writing dependency_links to celltk2.egg-info/dependency_links.txt
2022-06-28T18:00:50,769   writing requirements to celltk2.egg-info/requires.txt
2022-06-28T18:00:51,330   writing top-level names to celltk2.egg-info/top_level.txt
2022-06-28T18:00:51,381   reading manifest file 'celltk2.egg-info/SOURCES.txt'
2022-06-28T18:00:51,387   adding license file 'LICENSE'
2022-06-28T18:00:51,397   writing manifest file 'celltk2.egg-info/SOURCES.txt'
2022-06-28T18:00:51,401   /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-06-28T18:00:51,402       ############################
2022-06-28T18:00:51,402       # Package would be ignored #
2022-06-28T18:00:51,403       ############################
2022-06-28T18:00:51,403       Python recognizes 'celltk.external' as an importable package, however it is
2022-06-28T18:00:51,403       included in the distribution as "data".
2022-06-28T18:00:51,403       This behavior is likely to change in future versions of setuptools (and
2022-06-28T18:00:51,404       therefore is considered deprecated).

2022-06-28T18:00:51,404       Please make sure that 'celltk.external' is included as a package by using
2022-06-28T18:00:51,405       setuptools' `packages` configuration field or the proper discovery methods.

2022-06-28T18:00:51,405       You can read more about "package discovery" and "data files" on setuptools
2022-06-28T18:00:51,406       documentation page.


2022-06-28T18:00:51,407   !!

2022-06-28T18:00:51,407     check.warn(importable)
2022-06-28T18:00:51,407   copying celltk/external/misic/MiSiCv2.h5 -> build/lib/celltk/external/misic
2022-06-28T18:00:51,755   copying celltk/external/__init__.py -> build/lib/celltk/external
2022-06-28T18:00:52,953   installing to build/bdist.linux-armv7l/wheel
2022-06-28T18:00:52,954   running install
2022-06-28T18:00:53,015   running install_lib
2022-06-28T18:00:53,606   creating build/bdist.linux-armv7l
2022-06-28T18:00:53,607   creating build/bdist.linux-armv7l/wheel
2022-06-28T18:00:53,610   creating build/bdist.linux-armv7l/wheel/celltk
2022-06-28T18:00:53,612   copying build/lib/celltk/evaluate.py -> build/bdist.linux-armv7l/wheel/celltk
2022-06-28T18:00:53,618   creating build/bdist.linux-armv7l/wheel/celltk/core
2022-06-28T18:00:53,620   copying build/lib/celltk/core/orchestrator.py -> build/bdist.linux-armv7l/wheel/celltk/core
2022-06-28T18:00:53,626   copying build/lib/celltk/core/arrays.py -> build/bdist.linux-armv7l/wheel/celltk/core
2022-06-28T18:00:53,632   copying build/lib/celltk/core/pipeline.py -> build/bdist.linux-armv7l/wheel/celltk/core
2022-06-28T18:00:53,638   copying build/lib/celltk/core/operation.py -> build/bdist.linux-armv7l/wheel/celltk/core
2022-06-28T18:00:53,644   copying build/lib/celltk/process.py -> build/bdist.linux-armv7l/wheel/celltk
2022-06-28T18:00:53,650   copying build/lib/celltk/track.py -> build/bdist.linux-armv7l/wheel/celltk
2022-06-28T18:00:53,656   creating build/bdist.linux-armv7l/wheel/celltk/external
2022-06-28T18:00:53,659   creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-06-28T18:00:53,661   copying build/lib/celltk/external/kit_sch_ge/setup.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-06-28T18:00:53,665   copying build/lib/celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-06-28T18:00:53,670   copying build/lib/celltk/external/kit_sch_ge/run_tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-06-28T18:00:53,674   copying build/lib/celltk/external/kit_sch_ge/config.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-06-28T18:00:53,679   creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,680   copying build/lib/celltk/external/kit_sch_ge/tracker/graph.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,687   copying build/lib/celltk/external/kit_sch_ge/tracker/export.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,692   copying build/lib/celltk/external/kit_sch_ge/tracker/split_objects.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,696   copying build/lib/celltk/external/kit_sch_ge/tracker/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,699   copying build/lib/celltk/external/kit_sch_ge/tracker/flow.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,703   copying build/lib/celltk/external/kit_sch_ge/tracker/extract_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,707   copying build/lib/celltk/external/kit_sch_ge/tracker/tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,711   copying build/lib/celltk/external/kit_sch_ge/tracker/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,714   copying build/lib/celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker
2022-06-28T18:00:53,720   copying build/lib/celltk/external/kit_sch_ge/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge
2022-06-28T18:00:53,725   creating build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-06-28T18:00:53,726   copying build/lib/celltk/external/misic/MiSiCv2.h5 -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-06-28T18:00:54,070   copying build/lib/celltk/external/misic/misic.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-06-28T18:00:54,074   copying build/lib/celltk/external/misic/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-06-28T18:00:54,079   copying build/lib/celltk/external/misic/extras.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-06-28T18:00:54,083   copying build/lib/celltk/external/misic/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic
2022-06-28T18:00:54,087   copying build/lib/celltk/external/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external
2022-06-28T18:00:54,091   copying build/lib/celltk/segment.py -> build/bdist.linux-armv7l/wheel/celltk
2022-06-28T18:00:54,098   copying build/lib/celltk/__init__.py -> build/bdist.linux-armv7l/wheel/celltk
2022-06-28T18:00:54,101   copying build/lib/celltk/extract.py -> build/bdist.linux-armv7l/wheel/celltk
2022-06-28T18:00:54,109   creating build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,111   copying build/lib/celltk/utils/metric_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,115   copying build/lib/celltk/utils/estimator_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,119   copying build/lib/celltk/utils/operation_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,125   copying build/lib/celltk/utils/bayes_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,129   copying build/lib/celltk/utils/_fastkde.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,133   copying build/lib/celltk/utils/utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,139   copying build/lib/celltk/utils/slurm_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,144   copying build/lib/celltk/utils/kit_sch_ge_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,149   copying build/lib/celltk/utils/filter_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,153   copying build/lib/celltk/utils/peak_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,158   copying build/lib/celltk/utils/cli_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,163   copying build/lib/celltk/utils/process_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,166   copying build/lib/celltk/utils/plot_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,175   copying build/lib/celltk/utils/_types.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,179   copying build/lib/celltk/utils/log_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,182   copying build/lib/celltk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,185   copying build/lib/celltk/utils/unet_model.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,190   copying build/lib/celltk/utils/info_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,195   copying build/lib/celltk/utils/file_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils
2022-06-28T18:00:54,198   running install_egg_info
2022-06-28T18:00:54,791   Copying celltk2.egg-info to build/bdist.linux-armv7l/wheel/celltk2-0.4.0-py3.9.egg-info
2022-06-28T18:00:54,811   running install_scripts
2022-06-28T18:00:54,917   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-06-28T18:00:54,927   creating build/bdist.linux-armv7l/wheel/celltk2-0.4.0.dist-info/WHEEL
2022-06-28T18:00:54,931   creating '/tmp/pip-wheel-ldiwcibk/tmpfuwwyks9/celltk2-0.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-06-28T18:00:54,936   adding 'celltk/__init__.py'
2022-06-28T18:00:54,939   adding 'celltk/evaluate.py'
2022-06-28T18:00:54,944   adding 'celltk/extract.py'
2022-06-28T18:00:54,952   adding 'celltk/process.py'
2022-06-28T18:00:54,964   adding 'celltk/segment.py'
2022-06-28T18:00:54,972   adding 'celltk/track.py'
2022-06-28T18:00:54,990   adding 'celltk/core/arrays.py'
2022-06-28T18:00:55,004   adding 'celltk/core/operation.py'
2022-06-28T18:00:55,012   adding 'celltk/core/orchestrator.py'
2022-06-28T18:00:55,022   adding 'celltk/core/pipeline.py'
2022-06-28T18:00:55,026   adding 'celltk/external/__init__.py'
2022-06-28T18:00:55,029   adding 'celltk/external/kit_sch_ge/__init__.py'
2022-06-28T18:00:55,031   adding 'celltk/external/kit_sch_ge/config.py'
2022-06-28T18:00:55,039   adding 'celltk/external/kit_sch_ge/create_synth_segm_data.py'
2022-06-28T18:00:55,042   adding 'celltk/external/kit_sch_ge/run_tracking.py'
2022-06-28T18:00:55,044   adding 'celltk/external/kit_sch_ge/setup.py'
2022-06-28T18:00:55,047   adding 'celltk/external/kit_sch_ge/tracker/__init__.py'
2022-06-28T18:00:55,051   adding 'celltk/external/kit_sch_ge/tracker/export.py'
2022-06-28T18:00:55,054   adding 'celltk/external/kit_sch_ge/tracker/extract_data.py'
2022-06-28T18:00:55,057   adding 'celltk/external/kit_sch_ge/tracker/flow.py'
2022-06-28T18:00:55,069   adding 'celltk/external/kit_sch_ge/tracker/graph.py'
2022-06-28T18:00:55,080   adding 'celltk/external/kit_sch_ge/tracker/postprocessing.py'
2022-06-28T18:00:55,084   adding 'celltk/external/kit_sch_ge/tracker/split_objects.py'
2022-06-28T18:00:55,090   adding 'celltk/external/kit_sch_ge/tracker/tracking.py'
2022-06-28T18:00:55,093   adding 'celltk/external/kit_sch_ge/tracker/utils.py'
2022-06-28T18:00:57,798   adding 'celltk/external/misic/MiSiCv2.h5'
2022-06-28T18:00:57,948   adding 'celltk/external/misic/__init__.py'
2022-06-28T18:00:57,951   adding 'celltk/external/misic/extras.py'
2022-06-28T18:00:57,953   adding 'celltk/external/misic/misic.py'
2022-06-28T18:00:57,956   adding 'celltk/external/misic/utils.py'
2022-06-28T18:00:57,960   adding 'celltk/utils/__init__.py'
2022-06-28T18:00:57,963   adding 'celltk/utils/_fastkde.py'
2022-06-28T18:00:57,966   adding 'celltk/utils/_types.py'
2022-06-28T18:00:57,968   adding 'celltk/utils/bayes_utils.py'
2022-06-28T18:00:57,971   adding 'celltk/utils/cli_utils.py'
2022-06-28T18:00:57,974   adding 'celltk/utils/estimator_utils.py'
2022-06-28T18:00:57,977   adding 'celltk/utils/file_utils.py'
2022-06-28T18:00:57,979   adding 'celltk/utils/filter_utils.py'
2022-06-28T18:00:57,985   adding 'celltk/utils/info_utils.py'
2022-06-28T18:00:57,989   adding 'celltk/utils/kit_sch_ge_utils.py'
2022-06-28T18:00:57,991   adding 'celltk/utils/log_utils.py'
2022-06-28T18:00:57,994   adding 'celltk/utils/metric_utils.py'
2022-06-28T18:00:58,004   adding 'celltk/utils/operation_utils.py'
2022-06-28T18:00:58,010   adding 'celltk/utils/peak_utils.py'
2022-06-28T18:00:58,027   adding 'celltk/utils/plot_utils.py'
2022-06-28T18:00:58,031   adding 'celltk/utils/process_utils.py'
2022-06-28T18:00:58,039   adding 'celltk/utils/slurm_utils.py'
2022-06-28T18:00:58,047   adding 'celltk/utils/unet_model.py'
2022-06-28T18:00:58,053   adding 'celltk/utils/utils.py'
2022-06-28T18:00:58,057   adding 'celltk2-0.4.0.dist-info/LICENSE'
2022-06-28T18:00:58,060   adding 'celltk2-0.4.0.dist-info/METADATA'
2022-06-28T18:00:58,061   adding 'celltk2-0.4.0.dist-info/WHEEL'
2022-06-28T18:00:58,063   adding 'celltk2-0.4.0.dist-info/top_level.txt'
2022-06-28T18:00:58,065   adding 'celltk2-0.4.0.dist-info/RECORD'
2022-06-28T18:00:58,266   removing build/bdist.linux-armv7l/wheel
2022-06-28T18:00:58,619   Building wheel for celltk2 (pyproject.toml): finished with status 'done'
2022-06-28T18:00:59,021   Created wheel for celltk2: filename=celltk2-0.4.0-py3-none-any.whl size=6967781 sha256=91b6c76a817162ea6e7f1a80f8a0079d51ac517258120c8e819a35ff3646dc4c
2022-06-28T18:00:59,024   Stored in directory: /tmp/pip-ephem-wheel-cache-a47mo1fs/wheels/83/3c/0d/bb9d8ff3e011be57a7eb30e7eb77dc86d718b77920009fad13
2022-06-28T18:00:59,057 Successfully built celltk2
2022-06-28T18:00:59,524 Removed build tracker: '/tmp/pip-build-tracker-ms5cwkkr'