2022-06-29T19:22:25,064 Created temporary directory: /tmp/pip-ephem-wheel-cache-uljw3hsp 2022-06-29T19:22:25,070 Created temporary directory: /tmp/pip-build-tracker-9kxw71kj 2022-06-29T19:22:25,071 Initialized build tracking at /tmp/pip-build-tracker-9kxw71kj 2022-06-29T19:22:25,071 Created build tracker: /tmp/pip-build-tracker-9kxw71kj 2022-06-29T19:22:25,072 Entered build tracker: /tmp/pip-build-tracker-9kxw71kj 2022-06-29T19:22:25,073 Created temporary directory: /tmp/pip-wheel-_iucm2ky 2022-06-29T19:22:25,144 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-29T19:22:25,157 2 location(s) to search for versions of celltk2: 2022-06-29T19:22:25,157 * https://pypi.org/simple/celltk2/ 2022-06-29T19:22:25,157 * https://www.piwheels.org/simple/celltk2/ 2022-06-29T19:22:25,158 Fetching project page and analyzing links: https://pypi.org/simple/celltk2/ 2022-06-29T19:22:25,159 Getting page https://pypi.org/simple/celltk2/ 2022-06-29T19:22:25,163 Found index url https://pypi.org/simple 2022-06-29T19:22:25,282 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/ed/83/9f4882e169f9e3a0e94cb3b113f9d45d7b2c22ae3448fa5906093366a3a1/celltk2-0.4.0a0-py3-none-any.whl#sha256=14f4c7b1341a365e9feab2850c96e13d2b1ea5d8d17a0f17e52077baa126b9fd (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-06-29T19:22:25,283 Found link https://files.pythonhosted.org/packages/81/99/f32cd7145396be309d76b0159c57e5bf42424efa7c7309920823ce9d07fa/celltk2-0.4.0a0.tar.gz#sha256=74dc00488a8d8fc455b36f8fd84bdfe44600b9909dde8f6f3da0b21e82716222 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0a0 2022-06-29T19:22:25,284 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/96/ef/2fa5812a59f2c7c6f4acb9f3ed5c532dc6b323a51ac15c9365f0fbf5ff5f/celltk2-0.4.0-py3-none-any.whl#sha256=389b63524bfb3902401aef3812e02a8598ebf60b565adc714808642299e002a6 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-06-29T19:22:25,285 Found link https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0 2022-06-29T19:22:25,286 Fetching project page and analyzing links: https://www.piwheels.org/simple/celltk2/ 2022-06-29T19:22:25,287 Getting page https://www.piwheels.org/simple/celltk2/ 2022-06-29T19:22:25,289 Found index url https://www.piwheels.org/simple 2022-06-29T19:22:25,517 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0-py3-none-any.whl#sha256=91b6c76a817162ea6e7f1a80f8a0079d51ac517258120c8e819a35ff3646dc4c (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-06-29T19:22:25,518 Skipping link: not a file: https://www.piwheels.org/simple/celltk2/ 2022-06-29T19:22:25,519 Skipping link: not a file: https://pypi.org/simple/celltk2/ 2022-06-29T19:22:25,564 Given no hashes to check 1 links for project 'celltk2': discarding no candidates 2022-06-29T19:22:25,606 Collecting celltk2==0.4.0a0 2022-06-29T19:22:25,610 Created temporary directory: /tmp/pip-unpack-hawac5fn 2022-06-29T19:22:26,710 Downloading celltk2-0.4.0a0.tar.gz (6.9 MB) 2022-06-29T19:22:29,228 Added celltk2==0.4.0a0 from https://files.pythonhosted.org/packages/81/99/f32cd7145396be309d76b0159c57e5bf42424efa7c7309920823ce9d07fa/celltk2-0.4.0a0.tar.gz#sha256=74dc00488a8d8fc455b36f8fd84bdfe44600b9909dde8f6f3da0b21e82716222 to build tracker '/tmp/pip-build-tracker-9kxw71kj' 2022-06-29T19:22:29,237 Created temporary directory: /tmp/pip-build-env-f_mru21c 2022-06-29T19:22:29,258 Created temporary directory: /tmp/pip-standalone-pip-61c1f682 2022-06-29T19:22:31,684 Installing build dependencies: started 2022-06-29T19:22:31,686 Running command pip subprocess to install build dependencies 2022-06-29T19:22:42,910 Using pip 22.1.2 from /tmp/pip-standalone-pip-61c1f682/__env_pip__.zip/pip (python 3.9) 2022-06-29T19:22:44,514 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-29T19:22:48,588 Collecting setuptools>=42 2022-06-29T19:22:48,868 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.6.0-py3-none-any.whl (1.2 MB) 2022-06-29T19:22:55,911 Installing collected packages: setuptools 2022-06-29T19:23:01,342 Successfully installed setuptools-62.6.0 2022-06-29T19:23:02,040 Installing build dependencies: finished with status 'done' 2022-06-29T19:23:02,070 Getting requirements to build wheel: started 2022-06-29T19:23:02,072 Running command Getting requirements to build wheel 2022-06-29T19:23:08,019 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing '0.4.0a' to '0.4.0a0' 2022-06-29T19:23:08,021 warnings.warn(tmpl.format(**locals())) 2022-06-29T19:23:08,126 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-06-29T19:23:08,127 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-06-29T19:23:08,451 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-06-29T19:23:08,452 ########################################################################## 2022-06-29T19:23:08,453 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-06-29T19:23:08,453 ########################################################################## 2022-06-29T19:23:08,454 The following seems to be defined outside of `pyproject.toml`: 2022-06-29T19:23:08,454 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-06-29T19:23:08,455 According to the spec (see the link bellow), however, setuptools CANNOT 2022-06-29T19:23:08,455 consider this value unless 'dependencies' is listed as `dynamic`. 2022-06-29T19:23:08,456 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-06-29T19:23:08,456 For the time being, `setuptools` will still consider the given value (as a 2022-06-29T19:23:08,457 **transitional** measure), but please note that future releases of setuptools will 2022-06-29T19:23:08,457 follow strictly the standard. 2022-06-29T19:23:08,458 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-06-29T19:23:08,458 remove the `[project]` table from your file and rely entirely on other means of 2022-06-29T19:23:08,459 configuration. 2022-06-29T19:23:08,460 !! 2022-06-29T19:23:08,460 warnings.warn(msg, _WouldIgnoreField) 2022-06-29T19:23:10,094 running egg_info 2022-06-29T19:23:10,692 writing celltk2.egg-info/PKG-INFO 2022-06-29T19:23:11,313 writing dependency_links to celltk2.egg-info/dependency_links.txt 2022-06-29T19:23:14,140 writing requirements to celltk2.egg-info/requires.txt 2022-06-29T19:23:14,705 writing top-level names to celltk2.egg-info/top_level.txt 2022-06-29T19:23:15,346 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-06-29T19:23:15,398 reading manifest file 'celltk2.egg-info/SOURCES.txt' 2022-06-29T19:23:15,405 adding license file 'LICENSE' 2022-06-29T19:23:15,415 writing manifest file 'celltk2.egg-info/SOURCES.txt' 2022-06-29T19:23:15,716 Getting requirements to build wheel: finished with status 'done' 2022-06-29T19:23:15,743 Created temporary directory: /tmp/pip-standalone-pip-msppzwnu 2022-06-29T19:23:18,015 Installing backend dependencies: started 2022-06-29T19:23:18,017 Running command pip subprocess to install backend dependencies 2022-06-29T19:23:29,319 Using pip 22.1.2 from /tmp/pip-standalone-pip-msppzwnu/__env_pip__.zip/pip (python 3.9) 2022-06-29T19:23:30,970 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-29T19:23:31,850 Collecting wheel 2022-06-29T19:23:31,883 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-06-29T19:23:38,225 Installing collected packages: wheel 2022-06-29T19:23:38,518 Creating /tmp/pip-build-env-f_mru21c/normal/bin 2022-06-29T19:23:38,523 changing mode of /tmp/pip-build-env-f_mru21c/normal/bin/wheel to 755 2022-06-29T19:23:38,550 Successfully installed wheel-0.37.1 2022-06-29T19:23:39,186 Installing backend dependencies: finished with status 'done' 2022-06-29T19:23:39,209 Created temporary directory: /tmp/pip-modern-metadata-o6qm8qa5 2022-06-29T19:23:39,215 Preparing metadata (pyproject.toml): started 2022-06-29T19:23:39,217 Running command Preparing metadata (pyproject.toml) 2022-06-29T19:23:45,047 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing '0.4.0a' to '0.4.0a0' 2022-06-29T19:23:45,049 warnings.warn(tmpl.format(**locals())) 2022-06-29T19:23:45,160 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-06-29T19:23:45,160 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-06-29T19:23:45,478 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-06-29T19:23:45,479 ########################################################################## 2022-06-29T19:23:45,479 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-06-29T19:23:45,479 ########################################################################## 2022-06-29T19:23:45,480 The following seems to be defined outside of `pyproject.toml`: 2022-06-29T19:23:45,481 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-06-29T19:23:45,481 According to the spec (see the link bellow), however, setuptools CANNOT 2022-06-29T19:23:45,481 consider this value unless 'dependencies' is listed as `dynamic`. 2022-06-29T19:23:45,482 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-06-29T19:23:45,483 For the time being, `setuptools` will still consider the given value (as a 2022-06-29T19:23:45,483 **transitional** measure), but please note that future releases of setuptools will 2022-06-29T19:23:45,483 follow strictly the standard. 2022-06-29T19:23:45,484 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-06-29T19:23:45,484 remove the `[project]` table from your file and rely entirely on other means of 2022-06-29T19:23:45,484 configuration. 2022-06-29T19:23:45,485 !! 2022-06-29T19:23:45,486 warnings.warn(msg, _WouldIgnoreField) 2022-06-29T19:23:47,289 running dist_info 2022-06-29T19:23:47,882 creating /tmp/pip-modern-metadata-o6qm8qa5/celltk2.egg-info 2022-06-29T19:23:48,525 writing /tmp/pip-modern-metadata-o6qm8qa5/celltk2.egg-info/PKG-INFO 2022-06-29T19:23:49,082 writing dependency_links to /tmp/pip-modern-metadata-o6qm8qa5/celltk2.egg-info/dependency_links.txt 2022-06-29T19:23:51,854 writing requirements to /tmp/pip-modern-metadata-o6qm8qa5/celltk2.egg-info/requires.txt 2022-06-29T19:23:52,411 writing top-level names to /tmp/pip-modern-metadata-o6qm8qa5/celltk2.egg-info/top_level.txt 2022-06-29T19:23:52,415 writing manifest file '/tmp/pip-modern-metadata-o6qm8qa5/celltk2.egg-info/SOURCES.txt' 2022-06-29T19:23:53,039 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-06-29T19:23:53,102 reading manifest file '/tmp/pip-modern-metadata-o6qm8qa5/celltk2.egg-info/SOURCES.txt' 2022-06-29T19:23:53,106 adding license file 'LICENSE' 2022-06-29T19:23:53,114 writing manifest file '/tmp/pip-modern-metadata-o6qm8qa5/celltk2.egg-info/SOURCES.txt' 2022-06-29T19:23:53,118 creating '/tmp/pip-modern-metadata-o6qm8qa5/celltk2-0.4.0a0.dist-info' 2022-06-29T19:23:53,313 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-06-29T19:23:53,633 Preparing metadata (pyproject.toml): finished with status 'done' 2022-06-29T19:23:53,648 Source in /tmp/pip-wheel-_iucm2ky/celltk2_eedbfffb3b634fb081d7eb9578afe0bc has version 0.4.0a0, which satisfies requirement celltk2==0.4.0a0 from https://files.pythonhosted.org/packages/81/99/f32cd7145396be309d76b0159c57e5bf42424efa7c7309920823ce9d07fa/celltk2-0.4.0a0.tar.gz#sha256=74dc00488a8d8fc455b36f8fd84bdfe44600b9909dde8f6f3da0b21e82716222 2022-06-29T19:23:53,650 Removed celltk2==0.4.0a0 from https://files.pythonhosted.org/packages/81/99/f32cd7145396be309d76b0159c57e5bf42424efa7c7309920823ce9d07fa/celltk2-0.4.0a0.tar.gz#sha256=74dc00488a8d8fc455b36f8fd84bdfe44600b9909dde8f6f3da0b21e82716222 from build tracker '/tmp/pip-build-tracker-9kxw71kj' 2022-06-29T19:23:53,664 Created temporary directory: /tmp/pip-unpack-efmjq9np 2022-06-29T19:23:53,665 Building wheels for collected packages: celltk2 2022-06-29T19:23:53,676 Created temporary directory: /tmp/pip-wheel-i5qfryoh 2022-06-29T19:23:53,676 Destination directory: /tmp/pip-wheel-i5qfryoh 2022-06-29T19:23:53,682 Building wheel for celltk2 (pyproject.toml): started 2022-06-29T19:23:53,684 Running command Building wheel for celltk2 (pyproject.toml) 2022-06-29T19:23:59,484 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:531: UserWarning: Normalizing '0.4.0a' to '0.4.0a0' 2022-06-29T19:23:59,485 warnings.warn(tmpl.format(**locals())) 2022-06-29T19:23:59,589 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-06-29T19:23:59,589 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-06-29T19:23:59,905 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-06-29T19:23:59,906 ########################################################################## 2022-06-29T19:23:59,907 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-06-29T19:23:59,907 ########################################################################## 2022-06-29T19:23:59,908 The following seems to be defined outside of `pyproject.toml`: 2022-06-29T19:23:59,908 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-06-29T19:23:59,909 According to the spec (see the link bellow), however, setuptools CANNOT 2022-06-29T19:23:59,909 consider this value unless 'dependencies' is listed as `dynamic`. 2022-06-29T19:23:59,910 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-06-29T19:23:59,911 For the time being, `setuptools` will still consider the given value (as a 2022-06-29T19:23:59,911 **transitional** measure), but please note that future releases of setuptools will 2022-06-29T19:23:59,911 follow strictly the standard. 2022-06-29T19:23:59,912 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-06-29T19:23:59,912 remove the `[project]` table from your file and rely entirely on other means of 2022-06-29T19:23:59,913 configuration. 2022-06-29T19:23:59,913 !! 2022-06-29T19:23:59,914 warnings.warn(msg, _WouldIgnoreField) 2022-06-29T19:24:01,047 running bdist_wheel 2022-06-29T19:24:01,729 running build 2022-06-29T19:24:01,730 running build_py 2022-06-29T19:24:02,318 creating build 2022-06-29T19:24:02,319 creating build/lib 2022-06-29T19:24:02,320 creating build/lib/celltk 2022-06-29T19:24:02,322 copying celltk/segment.py -> build/lib/celltk 2022-06-29T19:24:02,328 copying celltk/process.py -> build/lib/celltk 2022-06-29T19:24:02,333 copying celltk/extract.py -> build/lib/celltk 2022-06-29T19:24:02,338 copying celltk/__init__.py -> build/lib/celltk 2022-06-29T19:24:02,341 copying celltk/evaluate.py -> build/lib/celltk 2022-06-29T19:24:02,344 copying celltk/track.py -> build/lib/celltk 2022-06-29T19:24:02,353 creating build/lib/celltk/utils 2022-06-29T19:24:02,355 copying celltk/utils/plot_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,366 copying celltk/utils/estimator_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,370 copying celltk/utils/_types.py -> build/lib/celltk/utils 2022-06-29T19:24:02,374 copying celltk/utils/_fastkde.py -> build/lib/celltk/utils 2022-06-29T19:24:02,379 copying celltk/utils/slurm_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,384 copying celltk/utils/bayes_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,388 copying celltk/utils/metric_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,392 copying celltk/utils/file_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,395 copying celltk/utils/operation_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,401 copying celltk/utils/filter_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,405 copying celltk/utils/__init__.py -> build/lib/celltk/utils 2022-06-29T19:24:02,408 copying celltk/utils/cli_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,412 copying celltk/utils/peak_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,417 copying celltk/utils/log_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,420 copying celltk/utils/kit_sch_ge_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,424 copying celltk/utils/unet_model.py -> build/lib/celltk/utils 2022-06-29T19:24:02,430 copying celltk/utils/utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,434 copying celltk/utils/process_utils.py -> build/lib/celltk/utils 2022-06-29T19:24:02,439 creating build/lib/celltk/external 2022-06-29T19:24:02,440 creating build/lib/celltk/external/misic 2022-06-29T19:24:02,442 copying celltk/external/misic/misic.py -> build/lib/celltk/external/misic 2022-06-29T19:24:02,445 copying celltk/external/misic/extras.py -> build/lib/celltk/external/misic 2022-06-29T19:24:02,448 copying celltk/external/misic/__init__.py -> build/lib/celltk/external/misic 2022-06-29T19:24:02,451 copying celltk/external/misic/utils.py -> build/lib/celltk/external/misic 2022-06-29T19:24:02,456 creating build/lib/celltk/external/kit_sch_ge 2022-06-29T19:24:02,458 copying celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T19:24:02,464 copying celltk/external/kit_sch_ge/setup.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T19:24:02,467 copying celltk/external/kit_sch_ge/__init__.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T19:24:02,470 copying celltk/external/kit_sch_ge/config.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T19:24:02,474 copying celltk/external/kit_sch_ge/run_tracking.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T19:24:02,479 creating build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,481 copying celltk/external/kit_sch_ge/tracker/graph.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,488 copying celltk/external/kit_sch_ge/tracker/export.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,492 copying celltk/external/kit_sch_ge/tracker/__init__.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,495 copying celltk/external/kit_sch_ge/tracker/extract_data.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,498 copying celltk/external/kit_sch_ge/tracker/flow.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,502 copying celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,507 copying celltk/external/kit_sch_ge/tracker/utils.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,511 copying celltk/external/kit_sch_ge/tracker/tracking.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,515 copying celltk/external/kit_sch_ge/tracker/split_objects.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:02,519 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-06-29T19:24:02,521 creating build/lib/celltk/core 2022-06-29T19:24:02,522 copying celltk/core/pipeline.py -> build/lib/celltk/core 2022-06-29T19:24:02,528 copying celltk/core/operation.py -> build/lib/celltk/core 2022-06-29T19:24:02,534 copying celltk/core/arrays.py -> build/lib/celltk/core 2022-06-29T19:24:02,542 copying celltk/core/orchestrator.py -> build/lib/celltk/core 2022-06-29T19:24:02,547 running egg_info 2022-06-29T19:24:03,776 writing celltk2.egg-info/PKG-INFO 2022-06-29T19:24:04,342 writing dependency_links to celltk2.egg-info/dependency_links.txt 2022-06-29T19:24:07,116 writing requirements to celltk2.egg-info/requires.txt 2022-06-29T19:24:07,671 writing top-level names to celltk2.egg-info/top_level.txt 2022-06-29T19:24:07,725 reading manifest file 'celltk2.egg-info/SOURCES.txt' 2022-06-29T19:24:07,731 adding license file 'LICENSE' 2022-06-29T19:24:07,741 writing manifest file 'celltk2.egg-info/SOURCES.txt' 2022-06-29T19:24:07,744 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-06-29T19:24:07,745 ############################ 2022-06-29T19:24:07,746 # Package would be ignored # 2022-06-29T19:24:07,746 ############################ 2022-06-29T19:24:07,746 Python recognizes 'celltk.external' as an importable package, however it is 2022-06-29T19:24:07,747 included in the distribution as "data". 2022-06-29T19:24:07,747 This behavior is likely to change in future versions of setuptools (and 2022-06-29T19:24:07,748 therefore is considered deprecated). 2022-06-29T19:24:07,748 Please make sure that 'celltk.external' is included as a package by using 2022-06-29T19:24:07,749 setuptools' `packages` configuration field or the proper discovery methods. 2022-06-29T19:24:07,750 You can read more about "package discovery" and "data files" on setuptools 2022-06-29T19:24:07,750 documentation page. 2022-06-29T19:24:07,751 !! 2022-06-29T19:24:07,752 check.warn(importable) 2022-06-29T19:24:07,753 copying celltk/external/__init__.py -> build/lib/celltk/external 2022-06-29T19:24:07,753 copying celltk/external/misic/MiSiCv2.h5 -> build/lib/celltk/external/misic 2022-06-29T19:24:09,263 installing to build/bdist.linux-armv7l/wheel 2022-06-29T19:24:09,264 running install 2022-06-29T19:24:09,325 running install_lib 2022-06-29T19:24:09,914 creating build/bdist.linux-armv7l 2022-06-29T19:24:09,914 creating build/bdist.linux-armv7l/wheel 2022-06-29T19:24:09,918 creating build/bdist.linux-armv7l/wheel/celltk 2022-06-29T19:24:09,920 creating build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T19:24:09,922 copying build/lib/celltk/core/pipeline.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T19:24:09,929 copying build/lib/celltk/core/operation.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T19:24:09,936 copying build/lib/celltk/core/arrays.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T19:24:09,943 copying build/lib/celltk/core/orchestrator.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T19:24:09,950 copying build/lib/celltk/segment.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T19:24:09,956 copying build/lib/celltk/process.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T19:24:09,962 copying build/lib/celltk/extract.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T19:24:09,967 copying build/lib/celltk/__init__.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T19:24:09,971 creating build/bdist.linux-armv7l/wheel/celltk/external 2022-06-29T19:24:09,973 creating build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T19:24:09,975 copying build/lib/celltk/external/misic/misic.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T19:24:09,979 copying build/lib/celltk/external/misic/MiSiCv2.h5 -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T19:24:10,352 copying build/lib/celltk/external/misic/extras.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T19:24:10,356 copying build/lib/celltk/external/misic/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T19:24:10,359 copying build/lib/celltk/external/misic/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T19:24:10,365 creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T19:24:10,366 copying build/lib/celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T19:24:10,372 copying build/lib/celltk/external/kit_sch_ge/setup.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T19:24:10,376 creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,378 copying build/lib/celltk/external/kit_sch_ge/tracker/graph.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,384 copying build/lib/celltk/external/kit_sch_ge/tracker/export.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,389 copying build/lib/celltk/external/kit_sch_ge/tracker/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,392 copying build/lib/celltk/external/kit_sch_ge/tracker/extract_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,395 copying build/lib/celltk/external/kit_sch_ge/tracker/flow.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,398 copying build/lib/celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,404 copying build/lib/celltk/external/kit_sch_ge/tracker/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,408 copying build/lib/celltk/external/kit_sch_ge/tracker/tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,413 copying build/lib/celltk/external/kit_sch_ge/tracker/split_objects.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T19:24:10,417 copying build/lib/celltk/external/kit_sch_ge/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T19:24:10,420 copying build/lib/celltk/external/kit_sch_ge/config.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T19:24:10,424 copying build/lib/celltk/external/kit_sch_ge/run_tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T19:24:10,427 copying build/lib/celltk/external/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external 2022-06-29T19:24:10,430 copying build/lib/celltk/evaluate.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T19:24:10,434 copying build/lib/celltk/track.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T19:24:10,440 creating build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,442 copying build/lib/celltk/utils/plot_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,451 copying build/lib/celltk/utils/estimator_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,454 copying build/lib/celltk/utils/_types.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,458 copying build/lib/celltk/utils/_fastkde.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,462 copying build/lib/celltk/utils/slurm_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,467 copying build/lib/celltk/utils/bayes_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,471 copying build/lib/celltk/utils/metric_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,474 copying build/lib/celltk/utils/file_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,478 copying build/lib/celltk/utils/operation_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,483 copying build/lib/celltk/utils/filter_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,487 copying build/lib/celltk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,490 copying build/lib/celltk/utils/cli_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,494 copying build/lib/celltk/utils/peak_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,499 copying build/lib/celltk/utils/log_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,502 copying build/lib/celltk/utils/kit_sch_ge_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,506 copying build/lib/celltk/utils/unet_model.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,512 copying build/lib/celltk/utils/utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,516 copying build/lib/celltk/utils/process_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T19:24:10,519 running install_egg_info 2022-06-29T19:24:11,107 Copying celltk2.egg-info to build/bdist.linux-armv7l/wheel/celltk2-0.4.0a0-py3.9.egg-info 2022-06-29T19:24:11,127 running install_scripts 2022-06-29T19:24:11,227 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-06-29T19:24:11,236 creating build/bdist.linux-armv7l/wheel/celltk2-0.4.0a0.dist-info/WHEEL 2022-06-29T19:24:11,241 creating '/tmp/pip-wheel-i5qfryoh/tmpk_tv1_ae/celltk2-0.4.0a0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-06-29T19:24:11,246 adding 'celltk/__init__.py' 2022-06-29T19:24:11,249 adding 'celltk/evaluate.py' 2022-06-29T19:24:11,254 adding 'celltk/extract.py' 2022-06-29T19:24:11,262 adding 'celltk/process.py' 2022-06-29T19:24:11,273 adding 'celltk/segment.py' 2022-06-29T19:24:11,282 adding 'celltk/track.py' 2022-06-29T19:24:11,299 adding 'celltk/core/arrays.py' 2022-06-29T19:24:11,313 adding 'celltk/core/operation.py' 2022-06-29T19:24:11,321 adding 'celltk/core/orchestrator.py' 2022-06-29T19:24:11,331 adding 'celltk/core/pipeline.py' 2022-06-29T19:24:11,334 adding 'celltk/external/__init__.py' 2022-06-29T19:24:11,338 adding 'celltk/external/kit_sch_ge/__init__.py' 2022-06-29T19:24:11,340 adding 'celltk/external/kit_sch_ge/config.py' 2022-06-29T19:24:11,347 adding 'celltk/external/kit_sch_ge/create_synth_segm_data.py' 2022-06-29T19:24:11,350 adding 'celltk/external/kit_sch_ge/run_tracking.py' 2022-06-29T19:24:11,352 adding 'celltk/external/kit_sch_ge/setup.py' 2022-06-29T19:24:11,356 adding 'celltk/external/kit_sch_ge/tracker/__init__.py' 2022-06-29T19:24:11,360 adding 'celltk/external/kit_sch_ge/tracker/export.py' 2022-06-29T19:24:11,363 adding 'celltk/external/kit_sch_ge/tracker/extract_data.py' 2022-06-29T19:24:11,365 adding 'celltk/external/kit_sch_ge/tracker/flow.py' 2022-06-29T19:24:11,378 adding 'celltk/external/kit_sch_ge/tracker/graph.py' 2022-06-29T19:24:11,388 adding 'celltk/external/kit_sch_ge/tracker/postprocessing.py' 2022-06-29T19:24:11,393 adding 'celltk/external/kit_sch_ge/tracker/split_objects.py' 2022-06-29T19:24:11,399 adding 'celltk/external/kit_sch_ge/tracker/tracking.py' 2022-06-29T19:24:11,402 adding 'celltk/external/kit_sch_ge/tracker/utils.py' 2022-06-29T19:24:14,098 adding 'celltk/external/misic/MiSiCv2.h5' 2022-06-29T19:24:14,248 adding 'celltk/external/misic/__init__.py' 2022-06-29T19:24:14,250 adding 'celltk/external/misic/extras.py' 2022-06-29T19:24:14,253 adding 'celltk/external/misic/misic.py' 2022-06-29T19:24:14,256 adding 'celltk/external/misic/utils.py' 2022-06-29T19:24:14,260 adding 'celltk/utils/__init__.py' 2022-06-29T19:24:14,263 adding 'celltk/utils/_fastkde.py' 2022-06-29T19:24:14,266 adding 'celltk/utils/_types.py' 2022-06-29T19:24:14,268 adding 'celltk/utils/bayes_utils.py' 2022-06-29T19:24:14,271 adding 'celltk/utils/cli_utils.py' 2022-06-29T19:24:14,274 adding 'celltk/utils/estimator_utils.py' 2022-06-29T19:24:14,277 adding 'celltk/utils/file_utils.py' 2022-06-29T19:24:14,280 adding 'celltk/utils/filter_utils.py' 2022-06-29T19:24:14,283 adding 'celltk/utils/kit_sch_ge_utils.py' 2022-06-29T19:24:14,286 adding 'celltk/utils/log_utils.py' 2022-06-29T19:24:14,289 adding 'celltk/utils/metric_utils.py' 2022-06-29T19:24:14,299 adding 'celltk/utils/operation_utils.py' 2022-06-29T19:24:14,305 adding 'celltk/utils/peak_utils.py' 2022-06-29T19:24:14,322 adding 'celltk/utils/plot_utils.py' 2022-06-29T19:24:14,326 adding 'celltk/utils/process_utils.py' 2022-06-29T19:24:14,334 adding 'celltk/utils/slurm_utils.py' 2022-06-29T19:24:14,342 adding 'celltk/utils/unet_model.py' 2022-06-29T19:24:14,348 adding 'celltk/utils/utils.py' 2022-06-29T19:24:14,353 adding 'celltk2-0.4.0a0.dist-info/LICENSE' 2022-06-29T19:24:14,355 adding 'celltk2-0.4.0a0.dist-info/METADATA' 2022-06-29T19:24:14,357 adding 'celltk2-0.4.0a0.dist-info/WHEEL' 2022-06-29T19:24:14,359 adding 'celltk2-0.4.0a0.dist-info/top_level.txt' 2022-06-29T19:24:14,361 adding 'celltk2-0.4.0a0.dist-info/RECORD' 2022-06-29T19:24:14,608 removing build/bdist.linux-armv7l/wheel 2022-06-29T19:24:14,961 Building wheel for celltk2 (pyproject.toml): finished with status 'done' 2022-06-29T19:24:15,330 Created wheel for celltk2: filename=celltk2-0.4.0a0-py3-none-any.whl size=6962801 sha256=103ddfed3505ea4150aded5a67adb295d476eba6c0f924fcc85f91dd98bd53bf 2022-06-29T19:24:15,332 Stored in directory: /tmp/pip-ephem-wheel-cache-uljw3hsp/wheels/14/3d/26/90312cd63c1e234c9e65d24491e70a25b621c9e4eb93b2fe9a 2022-06-29T19:24:15,366 Successfully built celltk2 2022-06-29T19:24:15,831 Removed build tracker: '/tmp/pip-build-tracker-9kxw71kj'