2022-06-29T22:53:28,910 Created temporary directory: /tmp/pip-ephem-wheel-cache-95wln7pw 2022-06-29T22:53:28,915 Created temporary directory: /tmp/pip-build-tracker-mbocy1_5 2022-06-29T22:53:28,916 Initialized build tracking at /tmp/pip-build-tracker-mbocy1_5 2022-06-29T22:53:28,916 Created build tracker: /tmp/pip-build-tracker-mbocy1_5 2022-06-29T22:53:28,917 Entered build tracker: /tmp/pip-build-tracker-mbocy1_5 2022-06-29T22:53:28,918 Created temporary directory: /tmp/pip-wheel-9aamrnr1 2022-06-29T22:53:28,997 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-29T22:53:29,006 2 location(s) to search for versions of celltk2: 2022-06-29T22:53:29,006 * https://pypi.org/simple/celltk2/ 2022-06-29T22:53:29,006 * https://www.piwheels.org/simple/celltk2/ 2022-06-29T22:53:29,007 Fetching project page and analyzing links: https://pypi.org/simple/celltk2/ 2022-06-29T22:53:29,008 Getting page https://pypi.org/simple/celltk2/ 2022-06-29T22:53:29,011 Found index url https://pypi.org/simple 2022-06-29T22:53:29,156 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/ed/83/9f4882e169f9e3a0e94cb3b113f9d45d7b2c22ae3448fa5906093366a3a1/celltk2-0.4.0a0-py3-none-any.whl#sha256=14f4c7b1341a365e9feab2850c96e13d2b1ea5d8d17a0f17e52077baa126b9fd (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-06-29T22:53:29,158 Found link https://files.pythonhosted.org/packages/81/99/f32cd7145396be309d76b0159c57e5bf42424efa7c7309920823ce9d07fa/celltk2-0.4.0a0.tar.gz#sha256=74dc00488a8d8fc455b36f8fd84bdfe44600b9909dde8f6f3da0b21e82716222 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0a0 2022-06-29T22:53:29,159 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/96/ef/2fa5812a59f2c7c6f4acb9f3ed5c532dc6b323a51ac15c9365f0fbf5ff5f/celltk2-0.4.0-py3-none-any.whl#sha256=389b63524bfb3902401aef3812e02a8598ebf60b565adc714808642299e002a6 (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-06-29T22:53:29,160 Found link https://files.pythonhosted.org/packages/22/f4/c83a2ae22ab7676b54df22729ffb2f87896ad3350cceb6c21fcee1393af1/celltk2-0.4.0.tar.gz#sha256=1d18823e382d6c0cfb793feb2ed2275ac0dcf7ba793a105d5af907792dae6aed (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.0 2022-06-29T22:53:29,160 Skipping link: No binaries permitted for celltk2: https://files.pythonhosted.org/packages/e2/30/0b53d24c5b9ad695b0b7b0725be4de60dd67419bfddd5f6ce3a708b20f02/celltk2-0.4.1-py3-none-any.whl#sha256=15c64413b8007cfa60a531ebe2667db893f578676fd7ebfc51696089a4008b0e (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8) 2022-06-29T22:53:29,162 Found link https://files.pythonhosted.org/packages/78/c7/350c706f5ba707f2b59a1325ee39c108bc3811b971fdab623255ccaa052a/celltk2-0.4.1.tar.gz#sha256=c53797329df322c75af3dbdaf3d34dd6e879ee27a485fd4e45390f2790ed312c (from https://pypi.org/simple/celltk2/) (requires-python:>=3.8), version: 0.4.1 2022-06-29T22:53:29,162 Fetching project page and analyzing links: https://www.piwheels.org/simple/celltk2/ 2022-06-29T22:53:29,163 Getting page https://www.piwheels.org/simple/celltk2/ 2022-06-29T22:53:29,165 Found index url https://www.piwheels.org/simple 2022-06-29T22:53:29,426 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0-py3-none-any.whl#sha256=91b6c76a817162ea6e7f1a80f8a0079d51ac517258120c8e819a35ff3646dc4c (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-06-29T22:53:29,427 Skipping link: No binaries permitted for celltk2: https://www.piwheels.org/simple/celltk2/celltk2-0.4.0a0-py3-none-any.whl#sha256=103ddfed3505ea4150aded5a67adb295d476eba6c0f924fcc85f91dd98bd53bf (from https://www.piwheels.org/simple/celltk2/) (requires-python:>=3.8) 2022-06-29T22:53:29,427 Skipping link: not a file: https://www.piwheels.org/simple/celltk2/ 2022-06-29T22:53:29,428 Skipping link: not a file: https://pypi.org/simple/celltk2/ 2022-06-29T22:53:29,473 Given no hashes to check 1 links for project 'celltk2': discarding no candidates 2022-06-29T22:53:29,514 Collecting celltk2==0.4.1 2022-06-29T22:53:29,519 Created temporary directory: /tmp/pip-unpack-rlkbdhcd 2022-06-29T22:53:30,839 Downloading celltk2-0.4.1.tar.gz (6.9 MB) 2022-06-29T22:53:33,372 Added celltk2==0.4.1 from https://files.pythonhosted.org/packages/78/c7/350c706f5ba707f2b59a1325ee39c108bc3811b971fdab623255ccaa052a/celltk2-0.4.1.tar.gz#sha256=c53797329df322c75af3dbdaf3d34dd6e879ee27a485fd4e45390f2790ed312c to build tracker '/tmp/pip-build-tracker-mbocy1_5' 2022-06-29T22:53:33,380 Created temporary directory: /tmp/pip-build-env-si48m8fw 2022-06-29T22:53:33,401 Created temporary directory: /tmp/pip-standalone-pip-4a8ctsio 2022-06-29T22:53:35,798 Installing build dependencies: started 2022-06-29T22:53:35,801 Running command pip subprocess to install build dependencies 2022-06-29T22:53:47,011 Using pip 22.1.2 from /tmp/pip-standalone-pip-4a8ctsio/__env_pip__.zip/pip (python 3.9) 2022-06-29T22:53:48,796 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-29T22:53:52,807 Collecting setuptools>=42 2022-06-29T22:53:53,078 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.6.0-py3-none-any.whl (1.2 MB) 2022-06-29T22:54:01,122 Installing collected packages: setuptools 2022-06-29T22:54:06,652 Successfully installed setuptools-62.6.0 2022-06-29T22:54:07,357 Installing build dependencies: finished with status 'done' 2022-06-29T22:54:07,386 Getting requirements to build wheel: started 2022-06-29T22:54:07,388 Running command Getting requirements to build wheel 2022-06-29T22:54:13,439 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-06-29T22:54:13,441 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-06-29T22:54:13,764 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-06-29T22:54:13,765 ########################################################################## 2022-06-29T22:54:13,766 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-06-29T22:54:13,766 ########################################################################## 2022-06-29T22:54:13,767 The following seems to be defined outside of `pyproject.toml`: 2022-06-29T22:54:13,767 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-06-29T22:54:13,768 According to the spec (see the link bellow), however, setuptools CANNOT 2022-06-29T22:54:13,768 consider this value unless 'dependencies' is listed as `dynamic`. 2022-06-29T22:54:13,769 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-06-29T22:54:13,769 For the time being, `setuptools` will still consider the given value (as a 2022-06-29T22:54:13,770 **transitional** measure), but please note that future releases of setuptools will 2022-06-29T22:54:13,770 follow strictly the standard. 2022-06-29T22:54:13,771 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-06-29T22:54:13,771 remove the `[project]` table from your file and rely entirely on other means of 2022-06-29T22:54:13,771 configuration. 2022-06-29T22:54:13,772 !! 2022-06-29T22:54:13,773 warnings.warn(msg, _WouldIgnoreField) 2022-06-29T22:54:15,413 running egg_info 2022-06-29T22:54:16,003 writing celltk2.egg-info/PKG-INFO 2022-06-29T22:54:16,618 writing dependency_links to celltk2.egg-info/dependency_links.txt 2022-06-29T22:54:19,402 writing requirements to celltk2.egg-info/requires.txt 2022-06-29T22:54:19,961 writing top-level names to celltk2.egg-info/top_level.txt 2022-06-29T22:54:20,605 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-06-29T22:54:20,642 reading manifest file 'celltk2.egg-info/SOURCES.txt' 2022-06-29T22:54:20,648 adding license file 'LICENSE' 2022-06-29T22:54:20,658 writing manifest file 'celltk2.egg-info/SOURCES.txt' 2022-06-29T22:54:20,960 Getting requirements to build wheel: finished with status 'done' 2022-06-29T22:54:20,987 Created temporary directory: /tmp/pip-standalone-pip-ptw13isp 2022-06-29T22:54:23,225 Installing backend dependencies: started 2022-06-29T22:54:23,227 Running command pip subprocess to install backend dependencies 2022-06-29T22:54:34,545 Using pip 22.1.2 from /tmp/pip-standalone-pip-ptw13isp/__env_pip__.zip/pip (python 3.9) 2022-06-29T22:54:36,367 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-06-29T22:54:37,260 Collecting wheel 2022-06-29T22:54:37,305 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-06-29T22:54:44,638 Installing collected packages: wheel 2022-06-29T22:54:44,935 Creating /tmp/pip-build-env-si48m8fw/normal/bin 2022-06-29T22:54:44,940 changing mode of /tmp/pip-build-env-si48m8fw/normal/bin/wheel to 755 2022-06-29T22:54:44,967 Successfully installed wheel-0.37.1 2022-06-29T22:54:45,613 Installing backend dependencies: finished with status 'done' 2022-06-29T22:54:45,636 Created temporary directory: /tmp/pip-modern-metadata-atmsk9tk 2022-06-29T22:54:45,642 Preparing metadata (pyproject.toml): started 2022-06-29T22:54:45,644 Running command Preparing metadata (pyproject.toml) 2022-06-29T22:54:51,645 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-06-29T22:54:51,646 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-06-29T22:54:51,959 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-06-29T22:54:51,961 ########################################################################## 2022-06-29T22:54:51,961 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-06-29T22:54:51,961 ########################################################################## 2022-06-29T22:54:51,962 The following seems to be defined outside of `pyproject.toml`: 2022-06-29T22:54:51,963 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-06-29T22:54:51,963 According to the spec (see the link bellow), however, setuptools CANNOT 2022-06-29T22:54:51,963 consider this value unless 'dependencies' is listed as `dynamic`. 2022-06-29T22:54:51,964 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-06-29T22:54:51,965 For the time being, `setuptools` will still consider the given value (as a 2022-06-29T22:54:51,965 **transitional** measure), but please note that future releases of setuptools will 2022-06-29T22:54:51,965 follow strictly the standard. 2022-06-29T22:54:51,966 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-06-29T22:54:51,966 remove the `[project]` table from your file and rely entirely on other means of 2022-06-29T22:54:51,967 configuration. 2022-06-29T22:54:51,967 !! 2022-06-29T22:54:51,968 warnings.warn(msg, _WouldIgnoreField) 2022-06-29T22:54:53,669 running dist_info 2022-06-29T22:54:54,267 creating /tmp/pip-modern-metadata-atmsk9tk/celltk2.egg-info 2022-06-29T22:54:54,924 writing /tmp/pip-modern-metadata-atmsk9tk/celltk2.egg-info/PKG-INFO 2022-06-29T22:54:55,486 writing dependency_links to /tmp/pip-modern-metadata-atmsk9tk/celltk2.egg-info/dependency_links.txt 2022-06-29T22:54:58,305 writing requirements to /tmp/pip-modern-metadata-atmsk9tk/celltk2.egg-info/requires.txt 2022-06-29T22:54:58,871 writing top-level names to /tmp/pip-modern-metadata-atmsk9tk/celltk2.egg-info/top_level.txt 2022-06-29T22:54:58,874 writing manifest file '/tmp/pip-modern-metadata-atmsk9tk/celltk2.egg-info/SOURCES.txt' 2022-06-29T22:54:59,510 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-06-29T22:54:59,570 reading manifest file '/tmp/pip-modern-metadata-atmsk9tk/celltk2.egg-info/SOURCES.txt' 2022-06-29T22:54:59,573 adding license file 'LICENSE' 2022-06-29T22:54:59,581 writing manifest file '/tmp/pip-modern-metadata-atmsk9tk/celltk2.egg-info/SOURCES.txt' 2022-06-29T22:54:59,584 creating '/tmp/pip-modern-metadata-atmsk9tk/celltk2-0.4.1.dist-info' 2022-06-29T22:54:59,781 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-06-29T22:55:00,100 Preparing metadata (pyproject.toml): finished with status 'done' 2022-06-29T22:55:00,115 Source in /tmp/pip-wheel-9aamrnr1/celltk2_e59e953013654b6ca90c7e5422ab0acc has version 0.4.1, which satisfies requirement celltk2==0.4.1 from https://files.pythonhosted.org/packages/78/c7/350c706f5ba707f2b59a1325ee39c108bc3811b971fdab623255ccaa052a/celltk2-0.4.1.tar.gz#sha256=c53797329df322c75af3dbdaf3d34dd6e879ee27a485fd4e45390f2790ed312c 2022-06-29T22:55:00,117 Removed celltk2==0.4.1 from https://files.pythonhosted.org/packages/78/c7/350c706f5ba707f2b59a1325ee39c108bc3811b971fdab623255ccaa052a/celltk2-0.4.1.tar.gz#sha256=c53797329df322c75af3dbdaf3d34dd6e879ee27a485fd4e45390f2790ed312c from build tracker '/tmp/pip-build-tracker-mbocy1_5' 2022-06-29T22:55:00,131 Created temporary directory: /tmp/pip-unpack-udc_zou5 2022-06-29T22:55:00,132 Building wheels for collected packages: celltk2 2022-06-29T22:55:00,142 Created temporary directory: /tmp/pip-wheel-q20_qnjw 2022-06-29T22:55:00,142 Destination directory: /tmp/pip-wheel-q20_qnjw 2022-06-29T22:55:00,148 Building wheel for celltk2 (pyproject.toml): started 2022-06-29T22:55:00,150 Running command Building wheel for celltk2 (pyproject.toml) 2022-06-29T22:55:06,120 /usr/local/lib/python3.9/dist-packages/setuptools/config/pyprojecttoml.py:102: _ExperimentalProjectMetadata: Support for project metadata in `pyproject.toml` is still experimental and may be removed (or change) in future releases. 2022-06-29T22:55:06,122 warnings.warn(msg, _ExperimentalProjectMetadata) 2022-06-29T22:55:06,436 /usr/local/lib/python3.9/dist-packages/setuptools/config/_apply_pyprojecttoml.py:101: _WouldIgnoreField: !! 2022-06-29T22:55:06,437 ########################################################################## 2022-06-29T22:55:06,438 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-06-29T22:55:06,438 ########################################################################## 2022-06-29T22:55:06,439 The following seems to be defined outside of `pyproject.toml`: 2022-06-29T22:55:06,439 `dependencies = ['setuptools>=41.2.0', 'tensorflow>=2.7.0,<2.9.0', 'numpy>=1.20,<1.23', 'scipy>=1.6.3', 'scikit_learn>=1.0.1', 'scikit_image>=0.19.1', 'matplotlib>=3.4.1', 'plotly>=5.6.0', 'pandas>=1.3.1', 'cvxopt~=1.2.7', 'gurobipy>=9.5.0', 'h5py>=3.6.0', 'imageio>=2.13.0', 'mahotas>=1.4.5,<1.4.13', 'napari>=0.4.12', 'PyYAML>=6.0', 'SimpleITK>=2.1.1', 'tifffile>=2021.11.2', 'btrack>=0.4.2', 'colorcet~=3.0.0', 'seaborn~=0.11.2']` 2022-06-29T22:55:06,440 According to the spec (see the link bellow), however, setuptools CANNOT 2022-06-29T22:55:06,440 consider this value unless 'dependencies' is listed as `dynamic`. 2022-06-29T22:55:06,441 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-06-29T22:55:06,442 For the time being, `setuptools` will still consider the given value (as a 2022-06-29T22:55:06,442 **transitional** measure), but please note that future releases of setuptools will 2022-06-29T22:55:06,442 follow strictly the standard. 2022-06-29T22:55:06,443 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-06-29T22:55:06,443 remove the `[project]` table from your file and rely entirely on other means of 2022-06-29T22:55:06,444 configuration. 2022-06-29T22:55:06,444 !! 2022-06-29T22:55:06,445 warnings.warn(msg, _WouldIgnoreField) 2022-06-29T22:55:07,593 running bdist_wheel 2022-06-29T22:55:08,284 running build 2022-06-29T22:55:08,284 running build_py 2022-06-29T22:55:08,880 creating build 2022-06-29T22:55:08,881 creating build/lib 2022-06-29T22:55:08,882 creating build/lib/celltk 2022-06-29T22:55:08,883 creating build/lib/celltk/external 2022-06-29T22:55:08,884 creating build/lib/celltk/external/kit_sch_ge 2022-06-29T22:55:08,886 copying celltk/external/kit_sch_ge/run_tracking.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T22:55:08,890 copying celltk/external/kit_sch_ge/config.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T22:55:08,893 copying celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T22:55:08,898 copying celltk/external/kit_sch_ge/__init__.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T22:55:08,902 copying celltk/external/kit_sch_ge/setup.py -> build/lib/celltk/external/kit_sch_ge 2022-06-29T22:55:08,906 creating build/lib/celltk/external/misic 2022-06-29T22:55:08,908 copying celltk/external/misic/__init__.py -> build/lib/celltk/external/misic 2022-06-29T22:55:08,911 copying celltk/external/misic/misic.py -> build/lib/celltk/external/misic 2022-06-29T22:55:08,914 copying celltk/external/misic/extras.py -> build/lib/celltk/external/misic 2022-06-29T22:55:08,917 copying celltk/external/misic/utils.py -> build/lib/celltk/external/misic 2022-06-29T22:55:08,924 creating build/lib/celltk/utils 2022-06-29T22:55:08,925 copying celltk/utils/operation_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,931 copying celltk/utils/process_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,935 copying celltk/utils/_types.py -> build/lib/celltk/utils 2022-06-29T22:55:08,938 copying celltk/utils/filter_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,941 copying celltk/utils/peak_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,946 copying celltk/utils/bayes_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,949 copying celltk/utils/plot_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,957 copying celltk/utils/kit_sch_ge_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,961 copying celltk/utils/slurm_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,965 copying celltk/utils/estimator_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,972 copying celltk/utils/__init__.py -> build/lib/celltk/utils 2022-06-29T22:55:08,975 copying celltk/utils/_fastkde.py -> build/lib/celltk/utils 2022-06-29T22:55:08,978 copying celltk/utils/cli_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,983 copying celltk/utils/unet_model.py -> build/lib/celltk/utils 2022-06-29T22:55:08,988 copying celltk/utils/log_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,992 copying celltk/utils/metric_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,995 copying celltk/utils/file_utils.py -> build/lib/celltk/utils 2022-06-29T22:55:08,999 copying celltk/utils/utils.py -> build/lib/celltk/utils 2022-06-29T22:55:09,006 copying celltk/track.py -> build/lib/celltk 2022-06-29T22:55:09,011 copying celltk/extract.py -> build/lib/celltk 2022-06-29T22:55:09,017 copying celltk/segment.py -> build/lib/celltk 2022-06-29T22:55:09,024 copying celltk/evaluate.py -> build/lib/celltk 2022-06-29T22:55:09,027 copying celltk/__init__.py -> build/lib/celltk 2022-06-29T22:55:09,031 copying celltk/process.py -> build/lib/celltk 2022-06-29T22:55:09,039 creating build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,041 copying celltk/external/kit_sch_ge/tracker/export.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,046 copying celltk/external/kit_sch_ge/tracker/graph.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,053 copying celltk/external/kit_sch_ge/tracker/tracking.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,059 copying celltk/external/kit_sch_ge/tracker/__init__.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,062 copying celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,068 copying celltk/external/kit_sch_ge/tracker/extract_data.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,071 copying celltk/external/kit_sch_ge/tracker/flow.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,075 copying celltk/external/kit_sch_ge/tracker/split_objects.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,080 copying celltk/external/kit_sch_ge/tracker/utils.py -> build/lib/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:09,083 package init file 'celltk/core/__init__.py' not found (or not a regular file) 2022-06-29T22:55:09,086 creating build/lib/celltk/core 2022-06-29T22:55:09,088 copying celltk/core/operation.py -> build/lib/celltk/core 2022-06-29T22:55:09,095 copying celltk/core/pipeline.py -> build/lib/celltk/core 2022-06-29T22:55:09,101 copying celltk/core/orchestrator.py -> build/lib/celltk/core 2022-06-29T22:55:09,107 copying celltk/core/arrays.py -> build/lib/celltk/core 2022-06-29T22:55:09,114 running egg_info 2022-06-29T22:55:10,358 writing celltk2.egg-info/PKG-INFO 2022-06-29T22:55:10,924 writing dependency_links to celltk2.egg-info/dependency_links.txt 2022-06-29T22:55:13,735 writing requirements to celltk2.egg-info/requires.txt 2022-06-29T22:55:14,297 writing top-level names to celltk2.egg-info/top_level.txt 2022-06-29T22:55:14,352 reading manifest file 'celltk2.egg-info/SOURCES.txt' 2022-06-29T22:55:14,359 adding license file 'LICENSE' 2022-06-29T22:55:14,369 writing manifest file 'celltk2.egg-info/SOURCES.txt' 2022-06-29T22:55:14,376 copying celltk/external/misic/MiSiCv2.h5 -> build/lib/celltk/external/misic 2022-06-29T22:55:15,953 installing to build/bdist.linux-armv7l/wheel 2022-06-29T22:55:15,953 running install 2022-06-29T22:55:16,015 running install_lib 2022-06-29T22:55:16,620 creating build/bdist.linux-armv7l 2022-06-29T22:55:16,621 creating build/bdist.linux-armv7l/wheel 2022-06-29T22:55:16,625 creating build/bdist.linux-armv7l/wheel/celltk 2022-06-29T22:55:16,627 copying build/lib/celltk/track.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T22:55:16,634 creating build/bdist.linux-armv7l/wheel/celltk/external 2022-06-29T22:55:16,637 creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T22:55:16,640 copying build/lib/celltk/external/kit_sch_ge/run_tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T22:55:16,644 copying build/lib/celltk/external/kit_sch_ge/config.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T22:55:16,648 copying build/lib/celltk/external/kit_sch_ge/create_synth_segm_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T22:55:16,654 copying build/lib/celltk/external/kit_sch_ge/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T22:55:16,660 creating build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,661 copying build/lib/celltk/external/kit_sch_ge/tracker/export.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,667 copying build/lib/celltk/external/kit_sch_ge/tracker/graph.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,674 copying build/lib/celltk/external/kit_sch_ge/tracker/tracking.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,679 copying build/lib/celltk/external/kit_sch_ge/tracker/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,682 copying build/lib/celltk/external/kit_sch_ge/tracker/postprocessing.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,689 copying build/lib/celltk/external/kit_sch_ge/tracker/extract_data.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,692 copying build/lib/celltk/external/kit_sch_ge/tracker/flow.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,696 copying build/lib/celltk/external/kit_sch_ge/tracker/split_objects.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,701 copying build/lib/celltk/external/kit_sch_ge/tracker/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge/tracker 2022-06-29T22:55:16,704 copying build/lib/celltk/external/kit_sch_ge/setup.py -> build/bdist.linux-armv7l/wheel/celltk/external/kit_sch_ge 2022-06-29T22:55:16,709 creating build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T22:55:16,711 copying build/lib/celltk/external/misic/MiSiCv2.h5 -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T22:55:17,072 copying build/lib/celltk/external/misic/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T22:55:17,074 copying build/lib/celltk/external/misic/misic.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T22:55:17,078 copying build/lib/celltk/external/misic/extras.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T22:55:17,081 copying build/lib/celltk/external/misic/utils.py -> build/bdist.linux-armv7l/wheel/celltk/external/misic 2022-06-29T22:55:17,085 copying build/lib/celltk/extract.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T22:55:17,089 copying build/lib/celltk/segment.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T22:55:17,095 copying build/lib/celltk/evaluate.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T22:55:17,099 copying build/lib/celltk/__init__.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T22:55:17,103 creating build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T22:55:17,104 copying build/lib/celltk/core/operation.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T22:55:17,111 copying build/lib/celltk/core/pipeline.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T22:55:17,116 copying build/lib/celltk/core/orchestrator.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T22:55:17,121 copying build/lib/celltk/core/arrays.py -> build/bdist.linux-armv7l/wheel/celltk/core 2022-06-29T22:55:17,128 copying build/lib/celltk/process.py -> build/bdist.linux-armv7l/wheel/celltk 2022-06-29T22:55:17,135 creating build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,136 copying build/lib/celltk/utils/operation_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,142 copying build/lib/celltk/utils/process_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,146 copying build/lib/celltk/utils/_types.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,149 copying build/lib/celltk/utils/filter_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,153 copying build/lib/celltk/utils/peak_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,157 copying build/lib/celltk/utils/bayes_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,160 copying build/lib/celltk/utils/plot_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,171 copying build/lib/celltk/utils/kit_sch_ge_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,175 copying build/lib/celltk/utils/slurm_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,180 copying build/lib/celltk/utils/estimator_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,183 copying build/lib/celltk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,186 copying build/lib/celltk/utils/_fastkde.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,190 copying build/lib/celltk/utils/cli_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,194 copying build/lib/celltk/utils/unet_model.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,200 copying build/lib/celltk/utils/log_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,203 copying build/lib/celltk/utils/metric_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,206 copying build/lib/celltk/utils/file_utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,210 copying build/lib/celltk/utils/utils.py -> build/bdist.linux-armv7l/wheel/celltk/utils 2022-06-29T22:55:17,214 running install_egg_info 2022-06-29T22:55:17,824 Copying celltk2.egg-info to build/bdist.linux-armv7l/wheel/celltk2-0.4.1-py3.9.egg-info 2022-06-29T22:55:17,844 running install_scripts 2022-06-29T22:55:17,945 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-06-29T22:55:17,955 creating build/bdist.linux-armv7l/wheel/celltk2-0.4.1.dist-info/WHEEL 2022-06-29T22:55:17,959 creating '/tmp/pip-wheel-q20_qnjw/tmpxbcjsw1t/celltk2-0.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-06-29T22:55:17,964 adding 'celltk/__init__.py' 2022-06-29T22:55:17,967 adding 'celltk/evaluate.py' 2022-06-29T22:55:17,972 adding 'celltk/extract.py' 2022-06-29T22:55:17,980 adding 'celltk/process.py' 2022-06-29T22:55:17,992 adding 'celltk/segment.py' 2022-06-29T22:55:18,000 adding 'celltk/track.py' 2022-06-29T22:55:18,021 adding 'celltk/core/arrays.py' 2022-06-29T22:55:18,034 adding 'celltk/core/operation.py' 2022-06-29T22:55:18,042 adding 'celltk/core/orchestrator.py' 2022-06-29T22:55:18,054 adding 'celltk/core/pipeline.py' 2022-06-29T22:55:18,059 adding 'celltk/external/kit_sch_ge/__init__.py' 2022-06-29T22:55:18,061 adding 'celltk/external/kit_sch_ge/config.py' 2022-06-29T22:55:18,068 adding 'celltk/external/kit_sch_ge/create_synth_segm_data.py' 2022-06-29T22:55:18,071 adding 'celltk/external/kit_sch_ge/run_tracking.py' 2022-06-29T22:55:18,073 adding 'celltk/external/kit_sch_ge/setup.py' 2022-06-29T22:55:18,077 adding 'celltk/external/kit_sch_ge/tracker/__init__.py' 2022-06-29T22:55:18,081 adding 'celltk/external/kit_sch_ge/tracker/export.py' 2022-06-29T22:55:18,084 adding 'celltk/external/kit_sch_ge/tracker/extract_data.py' 2022-06-29T22:55:18,087 adding 'celltk/external/kit_sch_ge/tracker/flow.py' 2022-06-29T22:55:18,099 adding 'celltk/external/kit_sch_ge/tracker/graph.py' 2022-06-29T22:55:18,109 adding 'celltk/external/kit_sch_ge/tracker/postprocessing.py' 2022-06-29T22:55:18,114 adding 'celltk/external/kit_sch_ge/tracker/split_objects.py' 2022-06-29T22:55:18,119 adding 'celltk/external/kit_sch_ge/tracker/tracking.py' 2022-06-29T22:55:18,123 adding 'celltk/external/kit_sch_ge/tracker/utils.py' 2022-06-29T22:55:20,834 adding 'celltk/external/misic/MiSiCv2.h5' 2022-06-29T22:55:20,984 adding 'celltk/external/misic/__init__.py' 2022-06-29T22:55:20,986 adding 'celltk/external/misic/extras.py' 2022-06-29T22:55:20,989 adding 'celltk/external/misic/misic.py' 2022-06-29T22:55:20,992 adding 'celltk/external/misic/utils.py' 2022-06-29T22:55:20,996 adding 'celltk/utils/__init__.py' 2022-06-29T22:55:20,999 adding 'celltk/utils/_fastkde.py' 2022-06-29T22:55:21,001 adding 'celltk/utils/_types.py' 2022-06-29T22:55:21,004 adding 'celltk/utils/bayes_utils.py' 2022-06-29T22:55:21,007 adding 'celltk/utils/cli_utils.py' 2022-06-29T22:55:21,010 adding 'celltk/utils/estimator_utils.py' 2022-06-29T22:55:21,012 adding 'celltk/utils/file_utils.py' 2022-06-29T22:55:21,015 adding 'celltk/utils/filter_utils.py' 2022-06-29T22:55:21,018 adding 'celltk/utils/kit_sch_ge_utils.py' 2022-06-29T22:55:21,021 adding 'celltk/utils/log_utils.py' 2022-06-29T22:55:21,024 adding 'celltk/utils/metric_utils.py' 2022-06-29T22:55:21,034 adding 'celltk/utils/operation_utils.py' 2022-06-29T22:55:21,040 adding 'celltk/utils/peak_utils.py' 2022-06-29T22:55:21,056 adding 'celltk/utils/plot_utils.py' 2022-06-29T22:55:21,061 adding 'celltk/utils/process_utils.py' 2022-06-29T22:55:21,068 adding 'celltk/utils/slurm_utils.py' 2022-06-29T22:55:21,077 adding 'celltk/utils/unet_model.py' 2022-06-29T22:55:21,082 adding 'celltk/utils/utils.py' 2022-06-29T22:55:21,087 adding 'celltk2-0.4.1.dist-info/LICENSE' 2022-06-29T22:55:21,089 adding 'celltk2-0.4.1.dist-info/METADATA' 2022-06-29T22:55:21,091 adding 'celltk2-0.4.1.dist-info/WHEEL' 2022-06-29T22:55:21,092 adding 'celltk2-0.4.1.dist-info/top_level.txt' 2022-06-29T22:55:21,094 adding 'celltk2-0.4.1.dist-info/RECORD' 2022-06-29T22:55:21,270 removing build/bdist.linux-armv7l/wheel 2022-06-29T22:55:21,622 Building wheel for celltk2 (pyproject.toml): finished with status 'done' 2022-06-29T22:55:21,967 Created wheel for celltk2: filename=celltk2-0.4.1-py3-none-any.whl size=6962681 sha256=fa6b7fd862d4d4b473c7808dd0d80d8ac5096586ad0acfbe989d38f6b0ad0e66 2022-06-29T22:55:21,969 Stored in directory: /tmp/pip-ephem-wheel-cache-95wln7pw/wheels/96/9f/1d/c42ba05a517be6235ca2e254c9c5e952fb5e710302bb3aaff4 2022-06-29T22:55:22,003 Successfully built celltk2 2022-06-29T22:55:22,508 Removed build tracker: '/tmp/pip-build-tracker-mbocy1_5'