2022-06-30T11:48:41,099 Created temporary directory: /tmp/pip-ephem-wheel-cache-l4thuz8z
2022-06-30T11:48:41,104 Created temporary directory: /tmp/pip-build-tracker-96toa0ay
2022-06-30T11:48:41,105 Initialized build tracking at /tmp/pip-build-tracker-96toa0ay
2022-06-30T11:48:41,106 Created build tracker: /tmp/pip-build-tracker-96toa0ay
2022-06-30T11:48:41,106 Entered build tracker: /tmp/pip-build-tracker-96toa0ay
2022-06-30T11:48:41,107 Created temporary directory: /tmp/pip-wheel-08d9ltvz
2022-06-30T11:48:41,176 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-06-30T11:48:41,185 2 location(s) to search for versions of stereopy:
2022-06-30T11:48:41,185 * https://pypi.org/simple/stereopy/
2022-06-30T11:48:41,185 * https://www.piwheels.org/simple/stereopy/
2022-06-30T11:48:41,186 Fetching project page and analyzing links: https://pypi.org/simple/stereopy/
2022-06-30T11:48:41,187 Getting page https://pypi.org/simple/stereopy/
2022-06-30T11:48:41,190 Found index url https://pypi.org/simple
2022-06-30T11:48:41,307   Found link https://files.pythonhosted.org/packages/ba/e8/211af80a80404175bc1fd16031e19187a8f9f30bbbf83ef798b805bcbfa8/stereopy-0.1.tar.gz#sha256=618b0c895b568f307841c4b6e95448eb73cc56ad5df3b5aff48261dc8a4eb24b (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1
2022-06-30T11:48:41,308   Found link https://files.pythonhosted.org/packages/8f/b9/c6937d46ebf500f64995f52f08cedcb7da142757c370a71646baf6aff8d4/stereopy-0.1.9.tar.gz#sha256=bbc2f792b3615175ceb42333f8d781a4b15ec9d090980da088bbbc757d4cb154 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.1.9
2022-06-30T11:48:41,310   Found link https://files.pythonhosted.org/packages/54/d5/44997684dbd629b1d1b6456fd36c6c8a469ef33fd42840b3610b3cc130ea/stereopy-0.2.0.tar.gz#sha256=17d9332696faf468d354a87d2ba78027fc3ebd023dcba9f1ebd0c9cff418e99e (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.2.0
2022-06-30T11:48:41,311   Found link https://files.pythonhosted.org/packages/16/63/f1b3f6cc029841596d2ab044092e8f272e68fb17590c72a6acb49fd9522f/stereopy-0.2.1.tar.gz#sha256=0a085a665f59cb2580b0f89333ca29a4d8cd27e26b9f945b683e5c52bb3a04d3 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.6), version: 0.2.1
2022-06-30T11:48:41,313   Found link https://files.pythonhosted.org/packages/e4/e7/1941f9a5646ce28f1a3ca8112eb6b1c243a296e215de176a94a2e626c608/stereopy-0.2.1.1.tar.gz#sha256=c5a2e2d8cd98e0ebbd928642c4c85c8dfe223b6e26ccb85bd6675bf206353a32 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.1.1
2022-06-30T11:48:41,314   Found link https://files.pythonhosted.org/packages/6c/76/6e35ca9b3c9d09da60e3891d6c7bcfe973d1ad9630e8ab44098440f27f2c/stereopy-0.2.2.tar.gz#sha256=607bb675a3babd9a292e25ebc8025e8e8d376d59ab935e9daed404fbff36f801 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.2
2022-06-30T11:48:41,316   Found link https://files.pythonhosted.org/packages/fa/b5/2c2344ba53f0de81fc4a386fd8c507967fd63d3e44021535488467182c1c/stereopy-0.2.3.tar.gz#sha256=0cf8fc82e9e41f1d0257126f08145200b4111720baad700b0c16a2f07e3880c6 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.3
2022-06-30T11:48:41,317   Found link https://files.pythonhosted.org/packages/a9/5e/02cc76bd28abf7219cc546cda064f4ec21c92b90bb519e618d16c1b2197f/stereopy-0.2.4.tar.gz#sha256=29962ff71a199b99c3516562dbb798c0ed30ff2e077d5010cbdf8b6928bd17b0 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.2.4
2022-06-30T11:48:41,318   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/56/fc/7f20b2c01dc17f6d9b850d6a8c02ce9095bbad5365142bf7ff8ec88792d4/stereopy-0.3.0-py3.7.egg#sha256=2953ed5dd968e64eba0ab15d496c2a9015252ba029d8c8444ffbafb0d499071b (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-30T11:48:41,319   Found link https://files.pythonhosted.org/packages/35/8d/9cb2ea6c8b59d7714148028ff88e8cfe91ea9e3a10d4a8e7292f3aae309d/stereopy-0.3.0.tar.gz#sha256=3bdd839de4886ff5f7b8251a00b1a763a66a5473e2fe6ec34cc4d2a604132abb (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.3.0
2022-06-30T11:48:41,320   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/cc/10/58d292a4ac53009f0d962ed34516a21f9736f6c96a68ae183412a3160b9b/stereopy-0.3.1-py3.7.egg#sha256=c0241685863ab325fa51f816372adb16d0da7a88582e44f9f006ce565a89f673 (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-30T11:48:41,321   Found link https://files.pythonhosted.org/packages/8b/d2/5decdd8b69540c81d8a0e488bc44404a04bc3a32399d5b072a50f6237af6/stereopy-0.3.1.tar.gz#sha256=9704e0b1b6e75f63a1456298f76ae4ba36793497b5eb84d6db2f2ae5390a000f (from https://pypi.org/simple/stereopy/) (requires-python:>=3.7), version: 0.3.1
2022-06-30T11:48:41,322 Fetching project page and analyzing links: https://www.piwheels.org/simple/stereopy/
2022-06-30T11:48:41,322 Getting page https://www.piwheels.org/simple/stereopy/
2022-06-30T11:48:41,325 Found index url https://www.piwheels.org/simple
2022-06-30T11:48:41,540   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.3.0-py3-none-any.whl#sha256=0656dab52c5d0c4807a5506ab388950e6bbb87788f5799902aa19249f4b2053c (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-30T11:48:41,541   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.4-py3-none-any.whl#sha256=b78386b89c5ad578686208cee978abbc50c63408f79a3e13825cbb216c1f85e2 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-30T11:48:41,542   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.2-py3-none-any.whl#sha256=cf30abb8d0be555dc5a8b89f25c6cb1d9751b4020397a3eb52f8378549ae6fd9 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-30T11:48:41,542   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.1.1-py3-none-any.whl#sha256=10f5984a2c3aa0f26dd16a87369bebc8274256dd4a44a641f50fa40e72e64d64 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.7)
2022-06-30T11:48:41,543   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.1-py3-none-any.whl#sha256=cf71efeac7cafa9bff7c3a22c48c80c49cdd789556030cddb0f42576b578642b (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-06-30T11:48:41,543   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.2.0-py3-none-any.whl#sha256=ae14c63aea986a54218b9fed56b879d0a97082db8a4f6fadc91a319e0ce90c8f (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-06-30T11:48:41,543   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1.9-py3-none-any.whl#sha256=9786a21d45274a8ed729134a2a5fa7379701020aa314d693fc95f4cca2a91e75 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-06-30T11:48:41,544   Skipping link: No binaries permitted for stereopy: https://www.piwheels.org/simple/stereopy/stereopy-0.1-py3-none-any.whl#sha256=1436faf8dcf176e53adce94e2bc87792de7d4cdaaed317c408128bc9daa5e231 (from https://www.piwheels.org/simple/stereopy/) (requires-python:>=3.6)
2022-06-30T11:48:41,545 Skipping link: not a file: https://www.piwheels.org/simple/stereopy/
2022-06-30T11:48:41,545 Skipping link: not a file: https://pypi.org/simple/stereopy/
2022-06-30T11:48:41,585 Given no hashes to check 1 links for project 'stereopy': discarding no candidates
2022-06-30T11:48:41,616 Collecting stereopy==0.3.1
2022-06-30T11:48:41,620   Created temporary directory: /tmp/pip-unpack-epoh_y6u
2022-06-30T11:48:41,729   Downloading stereopy-0.3.1.tar.gz (41.8 MB)
2022-06-30T11:48:57,673   Added stereopy==0.3.1 from https://files.pythonhosted.org/packages/8b/d2/5decdd8b69540c81d8a0e488bc44404a04bc3a32399d5b072a50f6237af6/stereopy-0.3.1.tar.gz#sha256=9704e0b1b6e75f63a1456298f76ae4ba36793497b5eb84d6db2f2ae5390a000f to build tracker '/tmp/pip-build-tracker-96toa0ay'
2022-06-30T11:48:57,677   Running setup.py (path:/tmp/pip-wheel-08d9ltvz/stereopy_57c8e195f10747e3838b509064916c13/setup.py) egg_info for package stereopy
2022-06-30T11:48:57,678   Created temporary directory: /tmp/pip-pip-egg-info-3j5ee602
2022-06-30T11:48:57,679   Preparing metadata (setup.py): started
2022-06-30T11:48:57,681   Running command python setup.py egg_info
2022-06-30T11:54:07,138   running egg_info
2022-06-30T11:54:07,146   creating /tmp/pip-pip-egg-info-3j5ee602/stereopy.egg-info
2022-06-30T11:54:07,947   writing /tmp/pip-pip-egg-info-3j5ee602/stereopy.egg-info/PKG-INFO
2022-06-30T11:54:08,540   writing dependency_links to /tmp/pip-pip-egg-info-3j5ee602/stereopy.egg-info/dependency_links.txt
2022-06-30T11:54:11,495   writing requirements to /tmp/pip-pip-egg-info-3j5ee602/stereopy.egg-info/requires.txt
2022-06-30T11:54:12,088   writing top-level names to /tmp/pip-pip-egg-info-3j5ee602/stereopy.egg-info/top_level.txt
2022-06-30T11:54:12,091   writing manifest file '/tmp/pip-pip-egg-info-3j5ee602/stereopy.egg-info/SOURCES.txt'
2022-06-30T11:54:13,667   /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
2022-06-30T11:54:13,668     SetuptoolsDeprecationWarning,
2022-06-30T11:54:13,668   listing git files failed - pretending there aren't any
2022-06-30T11:54:13,692   reading manifest file '/tmp/pip-pip-egg-info-3j5ee602/stereopy.egg-info/SOURCES.txt'
2022-06-30T11:54:13,696   adding license file 'LICENSE'
2022-06-30T11:54:13,711   writing manifest file '/tmp/pip-pip-egg-info-3j5ee602/stereopy.egg-info/SOURCES.txt'
2022-06-30T11:54:13,976   Preparing metadata (setup.py): finished with status 'done'
2022-06-30T11:54:13,987   Source in /tmp/pip-wheel-08d9ltvz/stereopy_57c8e195f10747e3838b509064916c13 has version 0.3.1, which satisfies requirement stereopy==0.3.1 from https://files.pythonhosted.org/packages/8b/d2/5decdd8b69540c81d8a0e488bc44404a04bc3a32399d5b072a50f6237af6/stereopy-0.3.1.tar.gz#sha256=9704e0b1b6e75f63a1456298f76ae4ba36793497b5eb84d6db2f2ae5390a000f
2022-06-30T11:54:13,989   Removed stereopy==0.3.1 from https://files.pythonhosted.org/packages/8b/d2/5decdd8b69540c81d8a0e488bc44404a04bc3a32399d5b072a50f6237af6/stereopy-0.3.1.tar.gz#sha256=9704e0b1b6e75f63a1456298f76ae4ba36793497b5eb84d6db2f2ae5390a000f from build tracker '/tmp/pip-build-tracker-96toa0ay'
2022-06-30T11:54:14,003 Created temporary directory: /tmp/pip-unpack-2bsem7sp
2022-06-30T11:54:14,004 Building wheels for collected packages: stereopy
2022-06-30T11:54:14,014   Created temporary directory: /tmp/pip-wheel-njvab6z8
2022-06-30T11:54:14,015   Building wheel for stereopy (setup.py): started
2022-06-30T11:54:14,017   Destination directory: /tmp/pip-wheel-njvab6z8
2022-06-30T11:54:14,017   Running command python setup.py bdist_wheel
2022-06-30T11:54:16,780   /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
2022-06-30T11:54:16,781     SetuptoolsDeprecationWarning,
2022-06-30T11:54:35,424   running bdist_wheel
2022-06-30T11:54:36,051   running build
2022-06-30T11:54:36,051   running build_py
2022-06-30T11:54:36,856   creating build
2022-06-30T11:54:36,857   creating build/lib
2022-06-30T11:54:36,859   creating build/lib/stereo
2022-06-30T11:54:36,862   copying stereo/__init__.py -> build/lib/stereo
2022-06-30T11:54:36,866   copying stereo/config.py -> build/lib/stereo
2022-06-30T11:54:36,871   copying stereo/log_manager.py -> build/lib/stereo
2022-06-30T11:54:36,878   creating build/lib/stereo/tools
2022-06-30T11:54:36,880   copying stereo/tools/find_markers.py -> build/lib/stereo/tools
2022-06-30T11:54:36,885   copying stereo/tools/__init__.py -> build/lib/stereo/tools
2022-06-30T11:54:36,890   copying stereo/tools/dim_reduce.py -> build/lib/stereo/tools
2022-06-30T11:54:36,895   copying stereo/tools/highly_variable_genes.py -> build/lib/stereo/tools
2022-06-30T11:54:36,900   copying stereo/tools/cell_correct.py -> build/lib/stereo/tools
2022-06-30T11:54:36,905   copying stereo/tools/spatial_lag.py -> build/lib/stereo/tools
2022-06-30T11:54:36,910   copying stereo/tools/clustering.py -> build/lib/stereo/tools
2022-06-30T11:54:36,915   copying stereo/tools/cell_segment.py -> build/lib/stereo/tools
2022-06-30T11:54:36,919   copying stereo/tools/spatial_pattern_score.py -> build/lib/stereo/tools
2022-06-30T11:54:36,923   copying stereo/tools/cell_type_anno.py -> build/lib/stereo/tools
2022-06-30T11:54:36,929   copying stereo/tools/cell_cut.py -> build/lib/stereo/tools
2022-06-30T11:54:36,933   copying stereo/tools/cluster.py -> build/lib/stereo/tools
2022-06-30T11:54:36,941   creating build/lib/stereo/algorithm
2022-06-30T11:54:36,943   copying stereo/algorithm/__init__.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,947   copying stereo/algorithm/dim_reduce.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,951   copying stereo/algorithm/gaussian_smooth.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,955   copying stereo/algorithm/mannwhitneyu.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,961   copying stereo/algorithm/_louvain.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,965   copying stereo/algorithm/highly_variable_genes.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,969   copying stereo/algorithm/spatial_hotspot.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,973   copying stereo/algorithm/statistics.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,976   copying stereo/algorithm/phenograph.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,980   copying stereo/algorithm/normalization.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,984   copying stereo/algorithm/spatial_pattern_score.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,987   copying stereo/algorithm/scale.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,991   copying stereo/algorithm/neighbors.py -> build/lib/stereo/algorithm
2022-06-30T11:54:36,995   copying stereo/algorithm/cell_correction.py -> build/lib/stereo/algorithm
2022-06-30T11:54:37,000   copying stereo/algorithm/leiden.py -> build/lib/stereo/algorithm
2022-06-30T11:54:37,003   copying stereo/algorithm/scenic.py -> build/lib/stereo/algorithm
2022-06-30T11:54:37,007   copying stereo/algorithm/umap.py -> build/lib/stereo/algorithm
2022-06-30T11:54:37,013   creating build/lib/stereo/plots
2022-06-30T11:54:37,015   copying stereo/plots/__init__.py -> build/lib/stereo/plots
2022-06-30T11:54:37,018   copying stereo/plots/marker_genes.py -> build/lib/stereo/plots
2022-06-30T11:54:37,023   copying stereo/plots/plot_collection.py -> build/lib/stereo/plots
2022-06-30T11:54:37,028   copying stereo/plots/scatter.py -> build/lib/stereo/plots
2022-06-30T11:54:37,033   copying stereo/plots/violin.py -> build/lib/stereo/plots
2022-06-30T11:54:37,037   creating build/lib/stereo/image
2022-06-30T11:54:37,039   copying stereo/image/__init__.py -> build/lib/stereo/image
2022-06-30T11:54:37,043   copying stereo/image/pyramid.py -> build/lib/stereo/image
2022-06-30T11:54:37,053   creating build/lib/stereo/utils
2022-06-30T11:54:37,055   copying stereo/utils/hvg_utils.py -> build/lib/stereo/utils
2022-06-30T11:54:37,059   copying stereo/utils/__init__.py -> build/lib/stereo/utils
2022-06-30T11:54:37,063   copying stereo/utils/time_consume.py -> build/lib/stereo/utils
2022-06-30T11:54:37,066   copying stereo/utils/correlation.py -> build/lib/stereo/utils
2022-06-30T11:54:37,070   copying stereo/utils/spmatrix_helper.py -> build/lib/stereo/utils
2022-06-30T11:54:37,074   copying stereo/utils/data_helper.py -> build/lib/stereo/utils
2022-06-30T11:54:37,079   creating build/lib/stereo/core
2022-06-30T11:54:37,081   copying stereo/core/__init__.py -> build/lib/stereo/core
2022-06-30T11:54:37,085   copying stereo/core/gene.py -> build/lib/stereo/core
2022-06-30T11:54:37,088   copying stereo/core/stereo_exp_data.py -> build/lib/stereo/core
2022-06-30T11:54:37,093   copying stereo/core/stereo_result.py -> build/lib/stereo/core
2022-06-30T11:54:37,097   copying stereo/core/st_pipeline.py -> build/lib/stereo/core
2022-06-30T11:54:37,103   copying stereo/core/tool_base.py -> build/lib/stereo/core
2022-06-30T11:54:37,107   copying stereo/core/data.py -> build/lib/stereo/core
2022-06-30T11:54:37,111   copying stereo/core/cell.py -> build/lib/stereo/core
2022-06-30T11:54:37,116   creating build/lib/stereo/io
2022-06-30T11:54:37,119   copying stereo/io/__init__.py -> build/lib/stereo/io
2022-06-30T11:54:37,123   copying stereo/io/h5ad.py -> build/lib/stereo/io
2022-06-30T11:54:37,129   copying stereo/io/writer.py -> build/lib/stereo/io
2022-06-30T11:54:37,134   copying stereo/io/reader.py -> build/lib/stereo/io
2022-06-30T11:54:37,140   copying stereo/io/gef.py -> build/lib/stereo/io
2022-06-30T11:54:37,146   creating build/lib/stereo/preprocess
2022-06-30T11:54:37,148   copying stereo/preprocess/__init__.py -> build/lib/stereo/preprocess
2022-06-30T11:54:37,153   copying stereo/preprocess/normalize.py -> build/lib/stereo/preprocess
2022-06-30T11:54:37,157   copying stereo/preprocess/sc_transform.py -> build/lib/stereo/preprocess
2022-06-30T11:54:37,161   copying stereo/preprocess/filter.py -> build/lib/stereo/preprocess
2022-06-30T11:54:37,166   copying stereo/preprocess/qc.py -> build/lib/stereo/preprocess
2022-06-30T11:54:37,172   creating build/lib/stereo/algorithm/pysctransform
2022-06-30T11:54:37,173   copying stereo/algorithm/pysctransform/__init__.py -> build/lib/stereo/algorithm/pysctransform
2022-06-30T11:54:37,177   copying stereo/algorithm/pysctransform/fit.py -> build/lib/stereo/algorithm/pysctransform
2022-06-30T11:54:37,182   copying stereo/algorithm/pysctransform/pysctransform.py -> build/lib/stereo/algorithm/pysctransform
2022-06-30T11:54:37,188   copying stereo/algorithm/pysctransform/plotting.py -> build/lib/stereo/algorithm/pysctransform
2022-06-30T11:54:37,192   copying stereo/algorithm/pysctransform/jax_bfgs.py -> build/lib/stereo/algorithm/pysctransform
2022-06-30T11:54:37,195   copying stereo/algorithm/pysctransform/r_bw.py -> build/lib/stereo/algorithm/pysctransform
2022-06-30T11:54:37,199   copying stereo/algorithm/pysctransform/fit_glmgp.py -> build/lib/stereo/algorithm/pysctransform
2022-06-30T11:54:37,204   creating build/lib/stereo/plots/interact_plot
2022-06-30T11:54:37,205   copying stereo/plots/interact_plot/__init__.py -> build/lib/stereo/plots/interact_plot
2022-06-30T11:54:37,209   copying stereo/plots/interact_plot/poly_selection.py -> build/lib/stereo/plots/interact_plot
2022-06-30T11:54:37,213   copying stereo/plots/interact_plot/spatial_cluster.py -> build/lib/stereo/plots/interact_plot
2022-06-30T11:54:37,216   copying stereo/plots/interact_plot/interactive_scatter.py -> build/lib/stereo/plots/interact_plot
2022-06-30T11:54:37,222   creating build/lib/stereo/plots/_plot_basic
2022-06-30T11:54:37,223   copying stereo/plots/_plot_basic/__init__.py -> build/lib/stereo/plots/_plot_basic
2022-06-30T11:54:37,227   copying stereo/plots/_plot_basic/heatmap_plt.py -> build/lib/stereo/plots/_plot_basic
2022-06-30T11:54:37,232   copying stereo/plots/_plot_basic/get_stereo_data.py -> build/lib/stereo/plots/_plot_basic
2022-06-30T11:54:37,237   creating build/lib/stereo/image/segmentation_deepcell
2022-06-30T11:54:37,239   copying stereo/image/segmentation_deepcell/__init__.py -> build/lib/stereo/image/segmentation_deepcell
2022-06-30T11:54:37,243   copying stereo/image/segmentation_deepcell/segment.py -> build/lib/stereo/image/segmentation_deepcell
2022-06-30T11:54:37,249   creating build/lib/stereo/image/segmentation
2022-06-30T11:54:37,251   copying stereo/image/segmentation/__init__.py -> build/lib/stereo/image/segmentation
2022-06-30T11:54:37,255   copying stereo/image/segmentation/segment.py -> build/lib/stereo/image/segmentation
2022-06-30T11:54:37,260   creating build/lib/stereo/image/tissue_cut
2022-06-30T11:54:37,263   copying stereo/image/tissue_cut/tissue_seg.py -> build/lib/stereo/image/tissue_cut
2022-06-30T11:54:37,267   copying stereo/image/tissue_cut/__init__.py -> build/lib/stereo/image/tissue_cut
2022-06-30T11:54:37,273   creating build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,275   copying stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,279   copying stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,284   copying stereo/image/segmentation_deepcell/seg_utils/__init__.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,288   copying stereo/image/segmentation_deepcell/seg_utils/utils.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,293   copying stereo/image/segmentation_deepcell/seg_utils/grade.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,298   copying stereo/image/segmentation_deepcell/seg_utils/cell_infer.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,303   copying stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,308   copying stereo/image/segmentation_deepcell/seg_utils/image.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,312   copying stereo/image/segmentation_deepcell/seg_utils/find_maxima.py -> build/lib/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:37,319   creating build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,321   copying stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,326   copying stereo/image/segmentation/seg_utils/__init__.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,329   copying stereo/image/segmentation/seg_utils/utils.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,335   copying stereo/image/segmentation/seg_utils/grade.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,340   copying stereo/image/segmentation/seg_utils/cell_infer.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,345   copying stereo/image/segmentation/seg_utils/resnet_unet.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,350   copying stereo/image/segmentation/seg_utils/image.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,354   copying stereo/image/segmentation/seg_utils/find_maxima.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,358   copying stereo/image/segmentation/seg_utils/dataset.py -> build/lib/stereo/image/segmentation/seg_utils
2022-06-30T11:54:37,364   creating build/lib/stereo/image/segmentation/seg_utils/models
2022-06-30T11:54:37,366   copying stereo/image/segmentation/seg_utils/models/epsanet.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-06-30T11:54:37,372   copying stereo/image/segmentation/seg_utils/models/__init__.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-06-30T11:54:37,376   copying stereo/image/segmentation/seg_utils/models/SE_weight_module.py -> build/lib/stereo/image/segmentation/seg_utils/models
2022-06-30T11:54:37,382   creating build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:37,384   copying stereo/image/tissue_cut/tissueCut_utils/__init__.py -> build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:37,387   copying stereo/image/tissue_cut/tissueCut_utils/tissue_seg_utils.py -> build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:37,392   copying stereo/image/tissue_cut/tissueCut_utils/tissue_seg_pipeline.py -> build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:37,396   copying stereo/image/tissue_cut/tissueCut_utils/tissue_seg_net.py -> build/lib/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:37,400   running egg_info
2022-06-30T11:54:38,992   writing stereopy.egg-info/PKG-INFO
2022-06-30T11:54:39,574   writing dependency_links to stereopy.egg-info/dependency_links.txt
2022-06-30T11:54:42,550   writing requirements to stereopy.egg-info/requires.txt
2022-06-30T11:54:43,134   writing top-level names to stereopy.egg-info/top_level.txt
2022-06-30T11:54:43,615   listing git files failed - pretending there aren't any
2022-06-30T11:54:43,633   reading manifest file 'stereopy.egg-info/SOURCES.txt'
2022-06-30T11:54:43,667   adding license file 'LICENSE'
2022-06-30T11:54:43,691   writing manifest file 'stereopy.egg-info/SOURCES.txt'
2022-06-30T11:54:44,542   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-06-30T11:54:44,543     setuptools.SetuptoolsDeprecationWarning,
2022-06-30T11:54:45,340   installing to build/bdist.linux-armv7l/wheel
2022-06-30T11:54:45,341   running install
2022-06-30T11:54:45,402   running install_lib
2022-06-30T11:54:46,202   creating build/bdist.linux-armv7l
2022-06-30T11:54:46,203   creating build/bdist.linux-armv7l/wheel
2022-06-30T11:54:46,205   creating build/bdist.linux-armv7l/wheel/stereo
2022-06-30T11:54:46,209   creating build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,210   copying build/lib/stereo/tools/find_markers.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,215   copying build/lib/stereo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,218   copying build/lib/stereo/tools/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,222   copying build/lib/stereo/tools/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,226   copying build/lib/stereo/tools/cell_correct.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,230   copying build/lib/stereo/tools/spatial_lag.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,234   copying build/lib/stereo/tools/clustering.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,238   copying build/lib/stereo/tools/cell_segment.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,242   copying build/lib/stereo/tools/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,245   copying build/lib/stereo/tools/cell_type_anno.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,250   copying build/lib/stereo/tools/cell_cut.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,253   copying build/lib/stereo/tools/cluster.py -> build/bdist.linux-armv7l/wheel/stereo/tools
2022-06-30T11:54:46,257   copying build/lib/stereo/__init__.py -> build/bdist.linux-armv7l/wheel/stereo
2022-06-30T11:54:46,261   copying build/lib/stereo/config.py -> build/bdist.linux-armv7l/wheel/stereo
2022-06-30T11:54:46,266   creating build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,267   copying build/lib/stereo/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,270   copying build/lib/stereo/algorithm/dim_reduce.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,274   copying build/lib/stereo/algorithm/gaussian_smooth.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,277   copying build/lib/stereo/algorithm/mannwhitneyu.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,281   copying build/lib/stereo/algorithm/_louvain.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,285   copying build/lib/stereo/algorithm/highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,289   copying build/lib/stereo/algorithm/spatial_hotspot.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,293   copying build/lib/stereo/algorithm/statistics.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,297   creating build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-30T11:54:46,299   copying build/lib/stereo/algorithm/pysctransform/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-30T11:54:46,302   copying build/lib/stereo/algorithm/pysctransform/fit.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-30T11:54:46,306   copying build/lib/stereo/algorithm/pysctransform/pysctransform.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-30T11:54:46,312   copying build/lib/stereo/algorithm/pysctransform/plotting.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-30T11:54:46,316   copying build/lib/stereo/algorithm/pysctransform/jax_bfgs.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-30T11:54:46,319   copying build/lib/stereo/algorithm/pysctransform/r_bw.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-30T11:54:46,322   copying build/lib/stereo/algorithm/pysctransform/fit_glmgp.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm/pysctransform
2022-06-30T11:54:46,325   copying build/lib/stereo/algorithm/phenograph.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,329   copying build/lib/stereo/algorithm/normalization.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,332   copying build/lib/stereo/algorithm/spatial_pattern_score.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,335   copying build/lib/stereo/algorithm/scale.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,339   copying build/lib/stereo/algorithm/neighbors.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,343   copying build/lib/stereo/algorithm/cell_correction.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,347   copying build/lib/stereo/algorithm/leiden.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,351   copying build/lib/stereo/algorithm/scenic.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,354   copying build/lib/stereo/algorithm/umap.py -> build/bdist.linux-armv7l/wheel/stereo/algorithm
2022-06-30T11:54:46,359   creating build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-30T11:54:46,360   copying build/lib/stereo/plots/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-30T11:54:46,364   copying build/lib/stereo/plots/marker_genes.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-30T11:54:46,368   copying build/lib/stereo/plots/plot_collection.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-30T11:54:46,374   creating build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-30T11:54:46,375   copying build/lib/stereo/plots/interact_plot/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-30T11:54:46,379   copying build/lib/stereo/plots/interact_plot/poly_selection.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-30T11:54:46,383   copying build/lib/stereo/plots/interact_plot/spatial_cluster.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-30T11:54:46,386   copying build/lib/stereo/plots/interact_plot/interactive_scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots/interact_plot
2022-06-30T11:54:46,390   copying build/lib/stereo/plots/scatter.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-30T11:54:46,395   creating build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-06-30T11:54:46,396   copying build/lib/stereo/plots/_plot_basic/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-06-30T11:54:46,400   copying build/lib/stereo/plots/_plot_basic/heatmap_plt.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-06-30T11:54:46,404   copying build/lib/stereo/plots/_plot_basic/get_stereo_data.py -> build/bdist.linux-armv7l/wheel/stereo/plots/_plot_basic
2022-06-30T11:54:46,407   copying build/lib/stereo/plots/violin.py -> build/bdist.linux-armv7l/wheel/stereo/plots
2022-06-30T11:54:46,411   copying build/lib/stereo/log_manager.py -> build/bdist.linux-armv7l/wheel/stereo
2022-06-30T11:54:46,415   creating build/bdist.linux-armv7l/wheel/stereo/image
2022-06-30T11:54:46,416   copying build/lib/stereo/image/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image
2022-06-30T11:54:46,420   copying build/lib/stereo/image/pyramid.py -> build/bdist.linux-armv7l/wheel/stereo/image
2022-06-30T11:54:46,425   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-06-30T11:54:46,426   copying build/lib/stereo/image/segmentation_deepcell/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-06-30T11:54:46,430   copying build/lib/stereo/image/segmentation_deepcell/segment.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell
2022-06-30T11:54:46,435   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,436   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,440   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,444   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,447   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,452   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/grade.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,456   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/cell_infer.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,460   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,463   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/image.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,467   copying build/lib/stereo/image/segmentation_deepcell/seg_utils/find_maxima.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation_deepcell/seg_utils
2022-06-30T11:54:46,472   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-06-30T11:54:46,473   copying build/lib/stereo/image/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-06-30T11:54:46,477   copying build/lib/stereo/image/segmentation/segment.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation
2022-06-30T11:54:46,481   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,483   copying build/lib/stereo/image/segmentation/seg_utils/cell_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,487   copying build/lib/stereo/image/segmentation/seg_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,490   copying build/lib/stereo/image/segmentation/seg_utils/utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,495   copying build/lib/stereo/image/segmentation/seg_utils/grade.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,499   copying build/lib/stereo/image/segmentation/seg_utils/cell_infer.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,505   creating build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-06-30T11:54:46,506   copying build/lib/stereo/image/segmentation/seg_utils/models/epsanet.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-06-30T11:54:46,511   copying build/lib/stereo/image/segmentation/seg_utils/models/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-06-30T11:54:46,515   copying build/lib/stereo/image/segmentation/seg_utils/models/SE_weight_module.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils/models
2022-06-30T11:54:46,518   copying build/lib/stereo/image/segmentation/seg_utils/resnet_unet.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,522   copying build/lib/stereo/image/segmentation/seg_utils/image.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,525   copying build/lib/stereo/image/segmentation/seg_utils/find_maxima.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,530   copying build/lib/stereo/image/segmentation/seg_utils/dataset.py -> build/bdist.linux-armv7l/wheel/stereo/image/segmentation/seg_utils
2022-06-30T11:54:46,534   creating build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-06-30T11:54:46,535   copying build/lib/stereo/image/tissue_cut/tissue_seg.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-06-30T11:54:46,539   copying build/lib/stereo/image/tissue_cut/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut
2022-06-30T11:54:46,543   creating build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:46,545   copying build/lib/stereo/image/tissue_cut/tissueCut_utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:46,547   copying build/lib/stereo/image/tissue_cut/tissueCut_utils/tissue_seg_utils.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:46,551   copying build/lib/stereo/image/tissue_cut/tissueCut_utils/tissue_seg_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:46,555   copying build/lib/stereo/image/tissue_cut/tissueCut_utils/tissue_seg_net.py -> build/bdist.linux-armv7l/wheel/stereo/image/tissue_cut/tissueCut_utils
2022-06-30T11:54:46,561   creating build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-30T11:54:46,562   copying build/lib/stereo/utils/hvg_utils.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-30T11:54:46,566   copying build/lib/stereo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-30T11:54:46,569   copying build/lib/stereo/utils/time_consume.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-30T11:54:46,572   copying build/lib/stereo/utils/correlation.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-30T11:54:46,576   copying build/lib/stereo/utils/spmatrix_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-30T11:54:46,579   copying build/lib/stereo/utils/data_helper.py -> build/bdist.linux-armv7l/wheel/stereo/utils
2022-06-30T11:54:46,583   creating build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,585   copying build/lib/stereo/core/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,588   copying build/lib/stereo/core/gene.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,591   copying build/lib/stereo/core/stereo_exp_data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,595   copying build/lib/stereo/core/stereo_result.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,599   copying build/lib/stereo/core/st_pipeline.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,604   copying build/lib/stereo/core/tool_base.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,608   copying build/lib/stereo/core/data.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,612   copying build/lib/stereo/core/cell.py -> build/bdist.linux-armv7l/wheel/stereo/core
2022-06-30T11:54:46,616   creating build/bdist.linux-armv7l/wheel/stereo/io
2022-06-30T11:54:46,617   copying build/lib/stereo/io/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-30T11:54:46,621   copying build/lib/stereo/io/h5ad.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-30T11:54:46,625   copying build/lib/stereo/io/writer.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-30T11:54:46,629   copying build/lib/stereo/io/reader.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-30T11:54:46,634   copying build/lib/stereo/io/gef.py -> build/bdist.linux-armv7l/wheel/stereo/io
2022-06-30T11:54:46,639   creating build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-30T11:54:46,641   copying build/lib/stereo/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-30T11:54:46,644   copying build/lib/stereo/preprocess/normalize.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-30T11:54:46,647   copying build/lib/stereo/preprocess/sc_transform.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-30T11:54:46,651   copying build/lib/stereo/preprocess/filter.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-30T11:54:46,655   copying build/lib/stereo/preprocess/qc.py -> build/bdist.linux-armv7l/wheel/stereo/preprocess
2022-06-30T11:54:46,657   running install_egg_info
2022-06-30T11:54:47,462   Copying stereopy.egg-info to build/bdist.linux-armv7l/wheel/stereopy-0.3.1-py3.7.egg-info
2022-06-30T11:54:47,482   running install_scripts
2022-06-30T11:54:47,846   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-06-30T11:54:47,854   creating build/bdist.linux-armv7l/wheel/stereopy-0.3.1.dist-info/WHEEL
2022-06-30T11:54:47,860   creating '/tmp/pip-wheel-njvab6z8/stereopy-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-06-30T11:54:47,865   adding 'stereo/__init__.py'
2022-06-30T11:54:47,870   adding 'stereo/config.py'
2022-06-30T11:54:47,873   adding 'stereo/log_manager.py'
2022-06-30T11:54:47,877   adding 'stereo/algorithm/__init__.py'
2022-06-30T11:54:47,881   adding 'stereo/algorithm/_louvain.py'
2022-06-30T11:54:47,885   adding 'stereo/algorithm/cell_correction.py'
2022-06-30T11:54:47,889   adding 'stereo/algorithm/dim_reduce.py'
2022-06-30T11:54:47,892   adding 'stereo/algorithm/gaussian_smooth.py'
2022-06-30T11:54:47,896   adding 'stereo/algorithm/highly_variable_genes.py'
2022-06-30T11:54:47,900   adding 'stereo/algorithm/leiden.py'
2022-06-30T11:54:47,905   adding 'stereo/algorithm/mannwhitneyu.py'
2022-06-30T11:54:47,911   adding 'stereo/algorithm/neighbors.py'
2022-06-30T11:54:47,914   adding 'stereo/algorithm/normalization.py'
2022-06-30T11:54:47,917   adding 'stereo/algorithm/phenograph.py'
2022-06-30T11:54:47,921   adding 'stereo/algorithm/scale.py'
2022-06-30T11:54:47,924   adding 'stereo/algorithm/scenic.py'
2022-06-30T11:54:47,927   adding 'stereo/algorithm/spatial_hotspot.py'
2022-06-30T11:54:47,931   adding 'stereo/algorithm/spatial_pattern_score.py'
2022-06-30T11:54:47,934   adding 'stereo/algorithm/statistics.py'
2022-06-30T11:54:47,937   adding 'stereo/algorithm/umap.py'
2022-06-30T11:54:47,942   adding 'stereo/algorithm/pysctransform/__init__.py'
2022-06-30T11:54:47,945   adding 'stereo/algorithm/pysctransform/fit.py'
2022-06-30T11:54:47,948   adding 'stereo/algorithm/pysctransform/fit_glmgp.py'
2022-06-30T11:54:47,950   adding 'stereo/algorithm/pysctransform/jax_bfgs.py'
2022-06-30T11:54:47,953   adding 'stereo/algorithm/pysctransform/plotting.py'
2022-06-30T11:54:47,962   adding 'stereo/algorithm/pysctransform/pysctransform.py'
2022-06-30T11:54:47,966   adding 'stereo/algorithm/pysctransform/r_bw.py'
2022-06-30T11:54:47,970   adding 'stereo/core/__init__.py'
2022-06-30T11:54:47,973   adding 'stereo/core/cell.py'
2022-06-30T11:54:47,977   adding 'stereo/core/data.py'
2022-06-30T11:54:47,980   adding 'stereo/core/gene.py'
2022-06-30T11:54:47,990   adding 'stereo/core/st_pipeline.py'
2022-06-30T11:54:47,995   adding 'stereo/core/stereo_exp_data.py'
2022-06-30T11:54:47,998   adding 'stereo/core/stereo_result.py'
2022-06-30T11:54:48,001   adding 'stereo/core/tool_base.py'
2022-06-30T11:54:48,005   adding 'stereo/image/__init__.py'
2022-06-30T11:54:48,007   adding 'stereo/image/pyramid.py'
2022-06-30T11:54:48,011   adding 'stereo/image/segmentation/__init__.py'
2022-06-30T11:54:48,013   adding 'stereo/image/segmentation/segment.py'
2022-06-30T11:54:48,017   adding 'stereo/image/segmentation/seg_utils/__init__.py'
2022-06-30T11:54:48,024   adding 'stereo/image/segmentation/seg_utils/cell_infer.py'
2022-06-30T11:54:48,028   adding 'stereo/image/segmentation/seg_utils/cell_seg_pipeline.py'
2022-06-30T11:54:48,031   adding 'stereo/image/segmentation/seg_utils/dataset.py'
2022-06-30T11:54:48,035   adding 'stereo/image/segmentation/seg_utils/find_maxima.py'
2022-06-30T11:54:48,038   adding 'stereo/image/segmentation/seg_utils/grade.py'
2022-06-30T11:54:48,040   adding 'stereo/image/segmentation/seg_utils/image.py'
2022-06-30T11:54:48,043   adding 'stereo/image/segmentation/seg_utils/resnet_unet.py'
2022-06-30T11:54:48,050   adding 'stereo/image/segmentation/seg_utils/utils.py'
2022-06-30T11:54:48,054   adding 'stereo/image/segmentation/seg_utils/models/SE_weight_module.py'
2022-06-30T11:54:48,056   adding 'stereo/image/segmentation/seg_utils/models/__init__.py'
2022-06-30T11:54:48,062   adding 'stereo/image/segmentation/seg_utils/models/epsanet.py'
2022-06-30T11:54:48,066   adding 'stereo/image/segmentation_deepcell/__init__.py'
2022-06-30T11:54:48,069   adding 'stereo/image/segmentation_deepcell/segment.py'
2022-06-30T11:54:48,072   adding 'stereo/image/segmentation_deepcell/seg_utils/__init__.py'
2022-06-30T11:54:48,077   adding 'stereo/image/segmentation_deepcell/seg_utils/cell_infer.py'
2022-06-30T11:54:48,081   adding 'stereo/image/segmentation_deepcell/seg_utils/cell_seg_pipeline.py'
2022-06-30T11:54:48,085   adding 'stereo/image/segmentation_deepcell/seg_utils/find_maxima.py'
2022-06-30T11:54:48,088   adding 'stereo/image/segmentation_deepcell/seg_utils/grade.py'
2022-06-30T11:54:48,090   adding 'stereo/image/segmentation_deepcell/seg_utils/image.py'
2022-06-30T11:54:48,093   adding 'stereo/image/segmentation_deepcell/seg_utils/tissue_seg.py'
2022-06-30T11:54:48,096   adding 'stereo/image/segmentation_deepcell/seg_utils/tissue_seg_pipeline.py'
2022-06-30T11:54:48,102   adding 'stereo/image/segmentation_deepcell/seg_utils/utils.py'
2022-06-30T11:54:48,106   adding 'stereo/image/tissue_cut/__init__.py'
2022-06-30T11:54:48,108   adding 'stereo/image/tissue_cut/tissue_seg.py'
2022-06-30T11:54:48,111   adding 'stereo/image/tissue_cut/tissueCut_utils/__init__.py'
2022-06-30T11:54:48,115   adding 'stereo/image/tissue_cut/tissueCut_utils/tissue_seg_net.py'
2022-06-30T11:54:48,120   adding 'stereo/image/tissue_cut/tissueCut_utils/tissue_seg_pipeline.py'
2022-06-30T11:54:48,123   adding 'stereo/image/tissue_cut/tissueCut_utils/tissue_seg_utils.py'
2022-06-30T11:54:48,126   adding 'stereo/io/__init__.py'
2022-06-30T11:54:48,129   adding 'stereo/io/gef.py'
2022-06-30T11:54:48,133   adding 'stereo/io/h5ad.py'
2022-06-30T11:54:48,141   adding 'stereo/io/reader.py'
2022-06-30T11:54:48,145   adding 'stereo/io/writer.py'
2022-06-30T11:54:48,149   adding 'stereo/plots/__init__.py'
2022-06-30T11:54:48,154   adding 'stereo/plots/marker_genes.py'
2022-06-30T11:54:48,159   adding 'stereo/plots/plot_collection.py'
2022-06-30T11:54:48,164   adding 'stereo/plots/scatter.py'
2022-06-30T11:54:48,166   adding 'stereo/plots/violin.py'
2022-06-30T11:54:48,170   adding 'stereo/plots/_plot_basic/__init__.py'
2022-06-30T11:54:48,172   adding 'stereo/plots/_plot_basic/get_stereo_data.py'
2022-06-30T11:54:48,176   adding 'stereo/plots/_plot_basic/heatmap_plt.py'
2022-06-30T11:54:48,179   adding 'stereo/plots/interact_plot/__init__.py'
2022-06-30T11:54:48,183   adding 'stereo/plots/interact_plot/interactive_scatter.py'
2022-06-30T11:54:48,186   adding 'stereo/plots/interact_plot/poly_selection.py'
2022-06-30T11:54:48,189   adding 'stereo/plots/interact_plot/spatial_cluster.py'
2022-06-30T11:54:48,192   adding 'stereo/preprocess/__init__.py'
2022-06-30T11:54:48,195   adding 'stereo/preprocess/filter.py'
2022-06-30T11:54:48,197   adding 'stereo/preprocess/normalize.py'
2022-06-30T11:54:48,199   adding 'stereo/preprocess/qc.py'
2022-06-30T11:54:48,202   adding 'stereo/preprocess/sc_transform.py'
2022-06-30T11:54:48,206   adding 'stereo/tools/__init__.py'
2022-06-30T11:54:48,209   adding 'stereo/tools/cell_correct.py'
2022-06-30T11:54:48,212   adding 'stereo/tools/cell_cut.py'
2022-06-30T11:54:48,214   adding 'stereo/tools/cell_segment.py'
2022-06-30T11:54:48,219   adding 'stereo/tools/cell_type_anno.py'
2022-06-30T11:54:48,222   adding 'stereo/tools/cluster.py'
2022-06-30T11:54:48,226   adding 'stereo/tools/clustering.py'
2022-06-30T11:54:48,229   adding 'stereo/tools/dim_reduce.py'
2022-06-30T11:54:48,232   adding 'stereo/tools/find_markers.py'
2022-06-30T11:54:48,236   adding 'stereo/tools/highly_variable_genes.py'
2022-06-30T11:54:48,239   adding 'stereo/tools/spatial_lag.py'
2022-06-30T11:54:48,241   adding 'stereo/tools/spatial_pattern_score.py'
2022-06-30T11:54:48,244   adding 'stereo/utils/__init__.py'
2022-06-30T11:54:48,247   adding 'stereo/utils/correlation.py'
2022-06-30T11:54:48,249   adding 'stereo/utils/data_helper.py'
2022-06-30T11:54:48,253   adding 'stereo/utils/hvg_utils.py'
2022-06-30T11:54:48,255   adding 'stereo/utils/spmatrix_helper.py'
2022-06-30T11:54:48,258   adding 'stereo/utils/time_consume.py'
2022-06-30T11:54:48,262   adding 'stereopy-0.3.1.dist-info/LICENSE'
2022-06-30T11:54:48,264   adding 'stereopy-0.3.1.dist-info/METADATA'
2022-06-30T11:54:48,266   adding 'stereopy-0.3.1.dist-info/WHEEL'
2022-06-30T11:54:48,268   adding 'stereopy-0.3.1.dist-info/top_level.txt'
2022-06-30T11:54:48,271   adding 'stereopy-0.3.1.dist-info/RECORD'
2022-06-30T11:54:48,284   removing build/bdist.linux-armv7l/wheel
2022-06-30T11:54:48,632   Building wheel for stereopy (setup.py): finished with status 'done'
2022-06-30T11:54:48,646   Created wheel for stereopy: filename=stereopy-0.3.1-py3-none-any.whl size=202290 sha256=f835bc3f59bc12ed7b96d5c50a54bbedca1f4eddee615a24269dddadcbdc0a2b
2022-06-30T11:54:48,648   Stored in directory: /tmp/pip-ephem-wheel-cache-l4thuz8z/wheels/f3/40/7b/d0bb5e52c0cfddfb32bfc0a48e5761a0a216ecf998bc79ff2f
2022-06-30T11:54:48,680 Successfully built stereopy
2022-06-30T11:54:48,705 Removed build tracker: '/tmp/pip-build-tracker-96toa0ay'