2022-07-01T04:24:31,785 Created temporary directory: /tmp/pip-ephem-wheel-cache-hikl2hgq 2022-07-01T04:24:31,791 Created temporary directory: /tmp/pip-build-tracker-3vk3iban 2022-07-01T04:24:31,791 Initialized build tracking at /tmp/pip-build-tracker-3vk3iban 2022-07-01T04:24:31,792 Created build tracker: /tmp/pip-build-tracker-3vk3iban 2022-07-01T04:24:31,792 Entered build tracker: /tmp/pip-build-tracker-3vk3iban 2022-07-01T04:24:31,793 Created temporary directory: /tmp/pip-wheel-pn4kpam2 2022-07-01T04:24:31,864 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-01T04:24:31,873 2 location(s) to search for versions of glycopeptidepy: 2022-07-01T04:24:31,873 * https://pypi.org/simple/glycopeptidepy/ 2022-07-01T04:24:31,873 * https://www.piwheels.org/simple/glycopeptidepy/ 2022-07-01T04:24:31,874 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2022-07-01T04:24:31,875 Getting page https://pypi.org/simple/glycopeptidepy/ 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0.0.17 2022-07-01T04:24:32,087 Fetching project page and analyzing links: https://www.piwheels.org/simple/glycopeptidepy/ 2022-07-01T04:24:32,088 Getting page https://www.piwheels.org/simple/glycopeptidepy/ 2022-07-01T04:24:32,090 Found index url https://www.piwheels.org/simple 2022-07-01T04:24:32,351 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.17-cp37-cp37m-linux_armv7l.whl#sha256=9f499b0ce7c1cefc0433851b8aa8743b63d87e15602490383c1da7d68547e13d (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T04:24:32,352 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.17-cp37-cp37m-linux_armv6l.whl#sha256=9f499b0ce7c1cefc0433851b8aa8743b63d87e15602490383c1da7d68547e13d (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T04:24:32,353 Skipping link: No binaries permitted for glycopeptidepy: 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https://pypi.org/simple/glycopeptidepy/ 2022-07-01T04:24:32,427 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2022-07-01T04:24:32,469 Collecting glycopeptidepy==0.0.17 2022-07-01T04:24:32,473 Created temporary directory: /tmp/pip-unpack-6kjidndv 2022-07-01T04:24:32,566 Downloading glycopeptidepy-0.0.17.tar.gz (1.3 MB) 2022-07-01T04:24:34,485 Added glycopeptidepy==0.0.17 from https://files.pythonhosted.org/packages/fd/67/4a94623ded52414037125c692fe8e0fe4ed4bb9b5e206fe8fdaccd609766/glycopeptidepy-0.0.17.tar.gz#sha256=b8e9b9b0db9357745c634f392edbcabc882f25b89c118a38befecee264f6e4c1 to build tracker '/tmp/pip-build-tracker-3vk3iban' 2022-07-01T04:24:34,500 Created temporary directory: /tmp/pip-build-env-y870x4_g 2022-07-01T04:24:34,521 Created temporary directory: /tmp/pip-standalone-pip-n11gt3db 2022-07-01T04:24:36,823 Installing build dependencies: started 2022-07-01T04:24:36,825 Running command pip subprocess to install build dependencies 2022-07-01T04:24:48,025 Using pip 22.1 from /tmp/pip-standalone-pip-n11gt3db/__env_pip__.zip/pip (python 3.9) 2022-07-01T04:24:49,500 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-01T04:24:53,712 Collecting setuptools 2022-07-01T04:24:53,989 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.6.0-py3-none-any.whl (1.2 MB) 2022-07-01T04:24:54,683 Collecting wheel 2022-07-01T04:24:54,716 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-07-01T04:24:58,281 Collecting Cython 2022-07-01T04:24:59,341 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.30-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-07-01T04:25:00,211 Collecting glypy 2022-07-01T04:25:00,577 Using cached https://www.piwheels.org/simple/glypy/glypy-1.0.6-cp39-cp39-linux_armv7l.whl (1.5 MB) 2022-07-01T04:25:01,109 Collecting hjson 2022-07-01T04:25:01,542 Using cached https://www.piwheels.org/simple/hjson/hjson-3.0.2-py3-none-any.whl (54 kB) 2022-07-01T04:25:01,828 Collecting six 2022-07-01T04:25:01,874 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2022-07-01T04:25:06,009 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2022-07-01T04:25:06,808 changing mode of /tmp/pip-build-env-y870x4_g/overlay/bin/wheel to 755 2022-07-01T04:25:18,512 changing mode of /tmp/pip-build-env-y870x4_g/overlay/bin/cygdb to 755 2022-07-01T04:25:18,517 changing mode of /tmp/pip-build-env-y870x4_g/overlay/bin/cython to 755 2022-07-01T04:25:18,521 changing mode of /tmp/pip-build-env-y870x4_g/overlay/bin/cythonize to 755 2022-07-01T04:25:21,359 Successfully installed Cython-0.29.30 glypy-1.0.6 hjson-3.0.2 setuptools-62.6.0 six-1.16.0 wheel-0.37.1 2022-07-01T04:25:21,550 WARNING: There was an error checking the latest version of pip. 2022-07-01T04:25:22,133 Installing build dependencies: finished with status 'done' 2022-07-01T04:25:22,181 Getting requirements to build wheel: started 2022-07-01T04:25:22,183 Running command Getting requirements to build wheel 2022-07-01T04:25:27,964 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/base.pxd 2022-07-01T04:25:27,965 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:30,610 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/fragment.pxd 2022-07-01T04:25:30,610 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:36,578 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2022-07-01T04:25:36,579 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:39,129 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2022-07-01T04:25:39,130 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:45,043 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/modification/rule.pxd 2022-07-01T04:25:45,043 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:46,555 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2022-07-01T04:25:46,556 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:51,636 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/glycan.pxd 2022-07-01T04:25:51,636 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:54,313 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/modification/modification.pxd 2022-07-01T04:25:54,313 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:55,249 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/modification/source.pxd 2022-07-01T04:25:55,249 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:25:56,356 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b/glycopeptidepy/_c/structure/sequence_methods.pxd 2022-07-01T04:25:56,357 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T04:26:00,401 Compiling glycopeptidepy/_c/structure/base.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-07-01T04:26:00,402 Compiling glycopeptidepy/_c/structure/fragment.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-07-01T04:26:00,403 Compiling glycopeptidepy/_c/structure/glycan.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T04:26:00,403 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T04:26:00,404 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T04:26:00,404 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T04:26:00,404 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T04:26:00,405 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-07-01T04:26:00,405 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T04:26:00,405 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it depends on /tmp/pip-build-env-y870x4_g/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-07-01T04:26:00,406 [ 1/10] Cythonizing glycopeptidepy/_c/structure/base.pyx 2022-07-01T04:26:00,406 [ 2/10] Cythonizing glycopeptidepy/_c/structure/fragment.pyx 2022-07-01T04:26:00,406 [ 3/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2022-07-01T04:26:00,407 [ 4/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2022-07-01T04:26:00,407 [ 5/10] Cythonizing glycopeptidepy/_c/structure/modification/rule.pyx 2022-07-01T04:26:00,407 [ 6/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2022-07-01T04:26:00,408 [ 7/10] Cythonizing glycopeptidepy/_c/structure/glycan.pyx 2022-07-01T04:26:00,408 [ 8/10] Cythonizing glycopeptidepy/_c/structure/modification/modification.pyx 2022-07-01T04:26:00,408 [ 9/10] Cythonizing glycopeptidepy/_c/structure/modification/source.pyx 2022-07-01T04:26:00,408 [10/10] Cythonizing glycopeptidepy/_c/structure/sequence_methods.pyx 2022-07-01T04:26:05,412 running egg_info 2022-07-01T04:26:06,021 writing glycopeptidepy.egg-info/PKG-INFO 2022-07-01T04:26:06,593 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2022-07-01T04:26:09,444 writing requirements to glycopeptidepy.egg-info/requires.txt 2022-07-01T04:26:10,021 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2022-07-01T04:26:10,756 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T04:26:10,771 reading manifest template 'MANIFEST.in' 2022-07-01T04:26:10,773 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-07-01T04:26:10,773 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-07-01T04:26:11,202 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T04:26:11,672 Getting requirements to build wheel: finished with status 'done' 2022-07-01T04:26:11,697 Created temporary directory: /tmp/pip-modern-metadata-yq41hwxp 2022-07-01T04:26:11,703 Preparing metadata (pyproject.toml): started 2022-07-01T04:26:11,705 Running command Preparing metadata (pyproject.toml) 2022-07-01T04:26:20,745 running dist_info 2022-07-01T04:26:21,366 creating /tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy.egg-info 2022-07-01T04:26:21,969 writing /tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy.egg-info/PKG-INFO 2022-07-01T04:26:22,535 writing dependency_links to /tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy.egg-info/dependency_links.txt 2022-07-01T04:26:25,375 writing requirements to /tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy.egg-info/requires.txt 2022-07-01T04:26:25,936 writing top-level names to /tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy.egg-info/top_level.txt 2022-07-01T04:26:25,939 writing manifest file '/tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T04:26:26,680 reading manifest file '/tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T04:26:26,683 reading manifest template 'MANIFEST.in' 2022-07-01T04:26:26,684 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-07-01T04:26:26,684 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-07-01T04:26:27,102 writing manifest file '/tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T04:26:27,105 creating '/tmp/pip-modern-metadata-yq41hwxp/glycopeptidepy-0.0.17.dist-info' 2022-07-01T04:26:27,615 Preparing metadata (pyproject.toml): finished with status 'done' 2022-07-01T04:26:27,629 Source in /tmp/pip-wheel-pn4kpam2/glycopeptidepy_fbdb4a45bf824f3fab5a79eb3a08424b has version 0.0.17, which satisfies requirement glycopeptidepy==0.0.17 from https://files.pythonhosted.org/packages/fd/67/4a94623ded52414037125c692fe8e0fe4ed4bb9b5e206fe8fdaccd609766/glycopeptidepy-0.0.17.tar.gz#sha256=b8e9b9b0db9357745c634f392edbcabc882f25b89c118a38befecee264f6e4c1 2022-07-01T04:26:27,631 Removed glycopeptidepy==0.0.17 from https://files.pythonhosted.org/packages/fd/67/4a94623ded52414037125c692fe8e0fe4ed4bb9b5e206fe8fdaccd609766/glycopeptidepy-0.0.17.tar.gz#sha256=b8e9b9b0db9357745c634f392edbcabc882f25b89c118a38befecee264f6e4c1 from build tracker '/tmp/pip-build-tracker-3vk3iban' 2022-07-01T04:26:27,639 Created temporary directory: /tmp/pip-unpack-c0clmu99 2022-07-01T04:26:27,640 Building wheels for collected packages: glycopeptidepy 2022-07-01T04:26:27,651 Created temporary directory: /tmp/pip-wheel-_a7osb3a 2022-07-01T04:26:27,652 Destination directory: /tmp/pip-wheel-_a7osb3a 2022-07-01T04:26:27,657 Building wheel for glycopeptidepy (pyproject.toml): started 2022-07-01T04:26:27,659 Running command Building wheel for glycopeptidepy (pyproject.toml) 2022-07-01T04:26:36,157 running bdist_wheel 2022-07-01T04:26:36,262 running build 2022-07-01T04:26:36,263 running build_py 2022-07-01T04:26:36,857 creating build 2022-07-01T04:26:36,858 creating build/lib.linux-armv7l-cpython-39 2022-07-01T04:26:36,859 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T04:26:36,861 copying glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T04:26:36,866 copying glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T04:26:36,869 copying glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T04:26:36,878 copying glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T04:26:36,883 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,884 copying glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,889 copying glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,892 copying glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,897 copying glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,901 copying glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,905 copying glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,909 copying glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,912 copying glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,916 copying glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,920 copying glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T04:26:36,926 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T04:26:36,927 copying glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T04:26:36,931 copying glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T04:26:36,935 copying glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T04:26:36,939 copying glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T04:26:36,941 copying glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T04:26:36,947 copying glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T04:26:36,952 copying glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T04:26:36,957 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T04:26:36,958 copying glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T04:26:36,962 copying glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T04:26:36,965 copying glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T04:26:36,969 copying glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T04:26:36,973 copying glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T04:26:36,977 copying glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T04:26:36,982 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:36,984 copying glycopeptidepy/test/test_modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:36,988 copying glycopeptidepy/test/test_fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:36,991 copying glycopeptidepy/test/common.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:36,994 copying glycopeptidepy/test/test_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:36,999 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,002 copying glycopeptidepy/test/test_intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,005 copying glycopeptidepy/test/test_enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,008 copying glycopeptidepy/test/test_uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,011 copying glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,014 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,017 copying glycopeptidepy/test/test_utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,020 copying glycopeptidepy/test/test_fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,024 copying glycopeptidepy/test/test_residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,027 copying glycopeptidepy/test/test_algorithms.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T04:26:37,031 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:37,033 copying glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:37,036 copying glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:37,040 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:26:37,041 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:26:37,048 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:26:37,051 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:26:37,054 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:26:37,061 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T04:26:37,062 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T04:26:37,067 copying glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T04:26:37,071 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T04:26:37,074 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T04:26:37,078 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T04:26:37,084 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,085 copying glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,090 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,095 copying glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,098 copying glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,103 copying glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,106 copying glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,109 copying glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,115 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T04:26:37,119 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T04:26:37,120 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T04:26:37,124 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T04:26:37,126 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T04:26:37,133 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T04:26:37,135 copying glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T04:26:37,139 copying glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T04:26:37,142 copying glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T04:26:37,146 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T04:26:37,150 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:37,151 copying glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:37,155 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:37,157 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:37,161 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:37,162 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:37,165 running egg_info 2022-07-01T04:26:38,374 writing glycopeptidepy.egg-info/PKG-INFO 2022-07-01T04:26:38,938 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2022-07-01T04:26:41,735 writing requirements to glycopeptidepy.egg-info/requires.txt 2022-07-01T04:26:42,302 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2022-07-01T04:26:42,372 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T04:26:42,382 reading manifest template 'MANIFEST.in' 2022-07-01T04:26:42,383 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-07-01T04:26:42,383 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-07-01T04:26:42,806 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T04:26:42,826 copying glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,856 copying glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,860 copying glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,878 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,882 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,885 copying glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,889 copying glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,892 copying glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,944 copying glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,948 copying glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,954 copying glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,978 copying glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,981 copying glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:42,986 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T04:26:42,990 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T04:26:43,087 copying glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,136 copying glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,139 copying glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,144 copying glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,161 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,165 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,169 copying glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,246 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,250 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,256 copying glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,305 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,309 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,314 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,362 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,367 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:26:43,373 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,404 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,408 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,411 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,486 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,490 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,497 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,567 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,571 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:26:43,576 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,597 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,601 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,605 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,639 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,643 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,648 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,670 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,674 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,678 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:26:43,701 running build_ext 2022-07-01T04:26:43,715 building 'glycopeptidepy._c.collectiontools' extension 2022-07-01T04:26:43,716 creating build/temp.linux-armv7l-cpython-39 2022-07-01T04:26:43,717 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T04:26:43,718 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T04:26:43,720 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.o 2022-07-01T04:26:52,913 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:26:53,178 building 'glycopeptidepy._c.count_table' extension 2022-07-01T04:26:53,180 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.o 2022-07-01T04:26:55,322 glycopeptidepy/_c/count_table.c:2393:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2022-07-01T04:26:55,323 2393 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2022-07-01T04:26:55,323 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-07-01T04:26:55,325 glycopeptidepy/_c/count_table.c:2135:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2022-07-01T04:26:55,325 2135 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2022-07-01T04:26:55,325 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-07-01T04:26:55,327 glycopeptidepy/_c/count_table.c:1905:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2022-07-01T04:26:55,327 1905 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2022-07-01T04:26:55,328 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-07-01T04:27:13,489 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:27:13,792 building 'glycopeptidepy._c.parser' extension 2022-07-01T04:27:13,794 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./glycopeptidepy/_c -I/usr/include/python3.9 -c glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.o 2022-07-01T04:27:14,513 In file included from glycopeptidepy/_c/parser.c:717: 2022-07-01T04:27:14,513 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2022-07-01T04:27:14,514 38 | #define PyInt_Check PyLong_Check 2022-07-01T04:27:14,514 | 2022-07-01T04:27:14,518 glycopeptidepy/_c/parser.c:624: note: this is the location of the previous definition 2022-07-01T04:27:14,518 624 | #define PyInt_Check(op) PyLong_Check(op) 2022-07-01T04:27:14,519 | 2022-07-01T04:27:14,519 In file included from glycopeptidepy/_c/parser.c:717: 2022-07-01T04:27:14,520 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2022-07-01T04:27:14,520 39 | #define PyInt_CheckExact PyLong_CheckExact 2022-07-01T04:27:14,520 | 2022-07-01T04:27:14,521 glycopeptidepy/_c/parser.c:625: note: this is the location of the previous definition 2022-07-01T04:27:14,521 625 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2022-07-01T04:27:14,521 | 2022-07-01T04:27:14,542 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2022-07-01T04:27:14,544 glycopeptidepy/_c/parser.c:1958:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T04:27:14,544 1958 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2022-07-01T04:27:14,544 | ^ 2022-07-01T04:27:14,611 glycopeptidepy/_c/parser.c: In function ‘__pyx_fuse_1__pyx_f_14glycopeptidepy_2_c_6parser__sequence_tokenizer’: 2022-07-01T04:27:14,617 glycopeptidepy/_c/parser.c:4448:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-07-01T04:27:14,617 4448 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 295, __pyx_L1_error) 2022-07-01T04:27:14,617 | ^~ 2022-07-01T04:27:14,633 glycopeptidepy/_c/parser.c:4875:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-07-01T04:27:14,633 4875 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 328, __pyx_L1_error) 2022-07-01T04:27:14,634 | ^~ 2022-07-01T04:27:14,644 glycopeptidepy/_c/parser.c:5081:64: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-07-01T04:27:14,645 5081 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 344, __pyx_L1_error) 2022-07-01T04:27:14,645 | ^~ 2022-07-01T04:27:14,671 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2022-07-01T04:27:14,678 glycopeptidepy/_c/parser.c:5944:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T04:27:14,678 5944 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2022-07-01T04:27:14,678 | ^ 2022-07-01T04:27:27,117 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:27:27,376 building 'glycopeptidepy._c.structure.base' extension 2022-07-01T04:27:27,377 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T04:27:27,379 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.o 2022-07-01T04:27:55,929 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:27:56,277 building 'glycopeptidepy._c.structure.fragment' extension 2022-07-01T04:27:56,279 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./glycopeptidepy/_c -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.o 2022-07-01T04:27:57,011 In file included from glycopeptidepy/_c/structure/fragment.c:718: 2022-07-01T04:27:57,011 ./glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2022-07-01T04:27:57,011 38 | #define PyInt_Check PyLong_Check 2022-07-01T04:27:57,012 | 2022-07-01T04:27:57,027 glycopeptidepy/_c/structure/fragment.c:624: note: this is the location of the previous definition 2022-07-01T04:27:57,028 624 | #define PyInt_Check(op) PyLong_Check(op) 2022-07-01T04:27:57,028 | 2022-07-01T04:27:57,029 In file included from glycopeptidepy/_c/structure/fragment.c:718: 2022-07-01T04:27:57,029 ./glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2022-07-01T04:27:57,029 39 | #define PyInt_CheckExact PyLong_CheckExact 2022-07-01T04:27:57,030 | 2022-07-01T04:27:57,030 glycopeptidepy/_c/structure/fragment.c:625: note: this is the location of the previous definition 2022-07-01T04:27:57,030 625 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2022-07-01T04:27:57,031 | 2022-07-01T04:27:57,085 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2022-07-01T04:27:57,089 glycopeptidepy/_c/structure/fragment.c:3197:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T04:27:57,090 3197 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2022-07-01T04:27:57,090 | ^ 2022-07-01T04:27:57,094 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2022-07-01T04:27:57,097 glycopeptidepy/_c/structure/fragment.c:3426:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T04:27:57,098 3426 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2022-07-01T04:27:57,098 | ^ 2022-07-01T04:27:57,348 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2022-07-01T04:27:57,361 glycopeptidepy/_c/structure/fragment.c:10329:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T04:27:57,362 10329 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-07-01T04:27:57,362 | ^ 2022-07-01T04:27:57,384 glycopeptidepy/_c/structure/fragment.c:10644:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T04:27:57,385 10644 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-07-01T04:27:57,385 | ^ 2022-07-01T04:27:57,400 glycopeptidepy/_c/structure/fragment.c:10818:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T04:27:57,400 10818 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-07-01T04:27:57,401 | ^ 2022-07-01T04:27:57,416 glycopeptidepy/_c/structure/fragment.c:10997:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T04:27:57,416 10997 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-07-01T04:27:57,416 | ^ 2022-07-01T04:28:44,087 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:28:44,505 building 'glycopeptidepy._c.structure.constants' extension 2022-07-01T04:28:44,506 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.o 2022-07-01T04:28:51,797 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:28:52,049 building 'glycopeptidepy._c.structure.glycan' extension 2022-07-01T04:28:52,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.o 2022-07-01T04:28:52,825 glycopeptidepy/_c/structure/glycan.c: In function ‘__pyx_fuse_0__pyx_f_14glycopeptidepy_2_c_9structure_6glycan_22GlycanCompositionProxy__create’: 2022-07-01T04:28:52,829 glycopeptidepy/_c/structure/glycan.c:2557:58: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-07-01T04:28:52,829 2557 | if (!(likely(PyString_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "str", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 28, __pyx_L1_error) 2022-07-01T04:28:52,830 | ^~ 2022-07-01T04:29:20,719 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:29:21,066 building 'glycopeptidepy._c.structure.sequence_methods' extension 2022-07-01T04:29:21,067 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.o 2022-07-01T04:29:22,227 glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2022-07-01T04:29:22,246 glycopeptidepy/_c/structure/sequence_methods.c:11748:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-07-01T04:29:22,247 11748 | __pyx_t_2 = ((__pyx_v_position_ >= ((struct __pyx_vtabstruct_14glycopeptidepy_2_c_9structure_16sequence_methods__PeptideSequenceCore *)__pyx_v_self->__pyx_base.__pyx_vtab)->get_size(__pyx_v_self)) != 0); 2022-07-01T04:29:22,247 | ^~ 2022-07-01T04:29:50,456 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:29:50,794 building 'glycopeptidepy._c.structure.modification.rule' extension 2022-07-01T04:29:50,795 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T04:29:50,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.o 2022-07-01T04:30:08,967 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:30:09,263 building 'glycopeptidepy._c.structure.modification.modification' extension 2022-07-01T04:30:09,265 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.o 2022-07-01T04:30:18,694 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:30:18,957 building 'glycopeptidepy._c.structure.modification.source' extension 2022-07-01T04:30:18,958 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.o 2022-07-01T04:30:28,794 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:30:29,065 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2022-07-01T04:30:29,067 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:30:29,068 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2022-07-01T04:30:38,695 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:30:38,960 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2022-07-01T04:30:38,961 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2022-07-01T04:31:20,780 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:31:21,162 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2022-07-01T04:31:21,164 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2022-07-01T04:31:22,229 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2022-07-01T04:31:22,241 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9485:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2022-07-01T04:31:22,241 9485 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2022-07-01T04:31:22,242 | ^ 2022-07-01T04:31:22,254 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9501:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2022-07-01T04:31:22,254 9501 | for (__pyx_t_10 = 1; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2022-07-01T04:31:22,255 | ^ 2022-07-01T04:31:22,454 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2022-07-01T04:31:22,472 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13593:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-07-01T04:31:22,473 13593 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-07-01T04:31:22,473 | ^ 2022-07-01T04:31:22,500 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2022-07-01T04:31:22,519 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14217:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-07-01T04:31:22,520 14217 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2022-07-01T04:31:22,520 | ^ 2022-07-01T04:31:22,549 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13975:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2022-07-01T04:31:22,549 13975 | int __pyx_t_15; 2022-07-01T04:31:22,549 | ^~~~~~~~~~ 2022-07-01T04:31:22,624 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2022-07-01T04:31:22,645 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:16024:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-07-01T04:31:22,645 16024 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2022-07-01T04:31:22,646 | ^ 2022-07-01T04:31:22,677 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:15782:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2022-07-01T04:31:22,678 15782 | int __pyx_t_15; 2022-07-01T04:31:22,678 | ^~~~~~~~~~ 2022-07-01T04:32:07,174 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:32:07,579 building 'glycopeptidepy._c.algorithm' extension 2022-07-01T04:32:07,580 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.o 2022-07-01T04:32:27,128 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so 2022-07-01T04:32:28,668 installing to build/bdist.linux-armv7l/wheel 2022-07-01T04:32:28,669 running install 2022-07-01T04:32:28,731 running install_lib 2022-07-01T04:32:29,336 creating build/bdist.linux-armv7l 2022-07-01T04:32:29,336 creating build/bdist.linux-armv7l/wheel 2022-07-01T04:32:29,340 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T04:32:29,341 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T04:32:29,348 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,349 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,354 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,358 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,363 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,367 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,371 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,375 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,379 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,384 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:32:29,386 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:32:29,392 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:32:29,396 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:32:29,400 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T04:32:29,407 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T04:32:29,409 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T04:32:29,415 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T04:32:29,420 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T04:32:29,424 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T04:32:29,428 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T04:32:29,433 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,438 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T04:32:29,444 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,447 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T04:32:29,449 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T04:32:29,556 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T04:32:29,559 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T04:32:29,562 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T04:32:29,565 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T04:32:29,570 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,575 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,579 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,583 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,588 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,593 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,597 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,603 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T04:32:29,608 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T04:32:29,610 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T04:32:29,615 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T04:32:29,618 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T04:32:29,623 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T04:32:29,626 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T04:32:29,634 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T04:32:29,636 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T04:32:29,642 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T04:32:29,645 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T04:32:29,650 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T04:32:29,654 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T04:32:29,659 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T04:32:29,663 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T04:32:29,667 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T04:32:29,674 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T04:32:29,676 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T04:32:29,680 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T04:32:29,684 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T04:32:29,689 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T04:32:29,694 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T04:32:29,698 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T04:32:29,701 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T04:32:29,706 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,708 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,712 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,715 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,718 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,722 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,725 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,728 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,732 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,735 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,737 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,740 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,743 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,747 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,750 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T04:32:29,755 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:29,756 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:29,776 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:29,779 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:29,801 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:29,808 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:29,809 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:29,861 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:29,864 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:29,867 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:29,872 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:29,926 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:29,973 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:29,988 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,031 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,035 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,039 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,043 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,045 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,064 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,068 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,088 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,153 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,236 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,239 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,308 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,313 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,320 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,323 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,407 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,411 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T04:32:30,414 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,419 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,488 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,565 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,570 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,573 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,576 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,616 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,631 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,637 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,639 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,642 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,676 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,697 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,701 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,704 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,725 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,729 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,751 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,755 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,793 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,811 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,815 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,818 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T04:32:30,822 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T04:32:30,866 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:30,908 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:30,911 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:30,915 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:30,954 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:30,971 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:30,974 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:30,978 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:30,982 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:31,024 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:31,054 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:31,058 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:31,061 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:31,065 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:31,088 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T04:32:31,091 running install_egg_info 2022-07-01T04:32:31,704 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.17-py3.9.egg-info 2022-07-01T04:32:31,732 running install_scripts 2022-07-01T04:32:31,924 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.17.dist-info/WHEEL 2022-07-01T04:32:31,930 creating '/tmp/pip-wheel-_a7osb3a/tmp88muu5hs/glycopeptidepy-0.0.17-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-07-01T04:32:31,935 adding 'glycopeptidepy/__init__.py' 2022-07-01T04:32:31,940 adding 'glycopeptidepy/algorithm.py' 2022-07-01T04:32:31,944 adding 'glycopeptidepy/enzyme.py' 2022-07-01T04:32:31,947 adding 'glycopeptidepy/version.py' 2022-07-01T04:32:31,950 adding 'glycopeptidepy/_c/__init__.py' 2022-07-01T04:32:32,050 adding 'glycopeptidepy/_c/algorithm.c' 2022-07-01T04:32:32,378 adding 'glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:32,394 adding 'glycopeptidepy/_c/algorithm.pyx' 2022-07-01T04:32:32,456 adding 'glycopeptidepy/_c/collectiontools.c' 2022-07-01T04:32:32,603 adding 'glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:32,611 adding 'glycopeptidepy/_c/collectiontools.pxd' 2022-07-01T04:32:32,613 adding 'glycopeptidepy/_c/collectiontools.pyx' 2022-07-01T04:32:32,616 adding 'glycopeptidepy/_c/compat.h' 2022-07-01T04:32:32,618 adding 'glycopeptidepy/_c/compat.pxd' 2022-07-01T04:32:32,736 adding 'glycopeptidepy/_c/count_table.c' 2022-07-01T04:32:33,067 adding 'glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:33,083 adding 'glycopeptidepy/_c/count_table.pxd' 2022-07-01T04:32:33,090 adding 'glycopeptidepy/_c/count_table.pyx' 2022-07-01T04:32:33,093 adding 'glycopeptidepy/_c/cythonize.py' 2022-07-01T04:32:33,169 adding 'glycopeptidepy/_c/parser.c' 2022-07-01T04:32:33,350 adding 'glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:33,358 adding 'glycopeptidepy/_c/parser.pxd' 2022-07-01T04:32:33,362 adding 'glycopeptidepy/_c/parser.pyx' 2022-07-01T04:32:33,367 adding 'glycopeptidepy/_c/structure/__init__.py' 2022-07-01T04:32:33,507 adding 'glycopeptidepy/_c/structure/base.c' 2022-07-01T04:32:33,983 adding 'glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:34,004 adding 'glycopeptidepy/_c/structure/base.pxd' 2022-07-01T04:32:34,008 adding 'glycopeptidepy/_c/structure/base.pyx' 2022-07-01T04:32:34,057 adding 'glycopeptidepy/_c/structure/constants.c' 2022-07-01T04:32:34,175 adding 'glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:34,182 adding 'glycopeptidepy/_c/structure/constants.pxd' 2022-07-01T04:32:34,184 adding 'glycopeptidepy/_c/structure/constants.pyx' 2022-07-01T04:32:34,404 adding 'glycopeptidepy/_c/structure/fragment.c' 2022-07-01T04:32:35,140 adding 'glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:35,173 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2022-07-01T04:32:35,180 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2022-07-01T04:32:35,315 adding 'glycopeptidepy/_c/structure/glycan.c' 2022-07-01T04:32:35,782 adding 'glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:35,802 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2022-07-01T04:32:35,807 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2022-07-01T04:32:35,948 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2022-07-01T04:32:36,407 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:36,426 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2022-07-01T04:32:36,433 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2022-07-01T04:32:36,437 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2022-07-01T04:32:36,503 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2022-07-01T04:32:36,661 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:36,670 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2022-07-01T04:32:36,672 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2022-07-01T04:32:36,879 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2022-07-01T04:32:37,561 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:37,592 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2022-07-01T04:32:37,603 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2022-07-01T04:32:37,826 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2022-07-01T04:32:38,466 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:38,494 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2022-07-01T04:32:38,500 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2022-07-01T04:32:38,504 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2022-07-01T04:32:38,566 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2022-07-01T04:32:38,724 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:38,733 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2022-07-01T04:32:38,735 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2022-07-01T04:32:38,830 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2022-07-01T04:32:39,131 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:39,146 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2022-07-01T04:32:39,149 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2022-07-01T04:32:39,214 adding 'glycopeptidepy/_c/structure/modification/source.c' 2022-07-01T04:32:39,381 adding 'glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T04:32:39,389 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2022-07-01T04:32:39,392 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2022-07-01T04:32:39,394 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2022-07-01T04:32:39,398 adding 'glycopeptidepy/io/__init__.py' 2022-07-01T04:32:39,401 adding 'glycopeptidepy/io/annotation.py' 2022-07-01T04:32:39,411 adding 'glycopeptidepy/io/fasta.py' 2022-07-01T04:32:39,414 adding 'glycopeptidepy/io/mzid.py' 2022-07-01T04:32:39,417 adding 'glycopeptidepy/io/nextprot.py' 2022-07-01T04:32:39,423 adding 'glycopeptidepy/io/uniprot.py' 2022-07-01T04:32:39,426 adding 'glycopeptidepy/io/utils.py' 2022-07-01T04:32:39,429 adding 'glycopeptidepy/io/cv/__init__.py' 2022-07-01T04:32:39,433 adding 'glycopeptidepy/io/cv/peff.py' 2022-07-01T04:32:39,436 adding 'glycopeptidepy/io/cv/term.py' 2022-07-01T04:32:39,439 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2022-07-01T04:32:39,443 adding 'glycopeptidepy/structure/__init__.py' 2022-07-01T04:32:39,446 adding 'glycopeptidepy/structure/base.py' 2022-07-01T04:32:39,448 adding 'glycopeptidepy/structure/composition.py' 2022-07-01T04:32:39,450 adding 'glycopeptidepy/structure/constants.py' 2022-07-01T04:32:39,456 adding 'glycopeptidepy/structure/fragment.py' 2022-07-01T04:32:39,461 adding 'glycopeptidepy/structure/glycan.py' 2022-07-01T04:32:39,465 adding 'glycopeptidepy/structure/parser.py' 2022-07-01T04:32:39,469 adding 'glycopeptidepy/structure/residue.py' 2022-07-01T04:32:39,473 adding 'glycopeptidepy/structure/sequence_composition.py' 2022-07-01T04:32:39,476 adding 'glycopeptidepy/structure/terminal_group.py' 2022-07-01T04:32:39,479 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2022-07-01T04:32:39,482 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2022-07-01T04:32:39,491 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2022-07-01T04:32:39,498 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2022-07-01T04:32:39,502 adding 'glycopeptidepy/structure/modification/__init__.py' 2022-07-01T04:32:39,505 adding 'glycopeptidepy/structure/modification/descriptors.py' 2022-07-01T04:32:39,509 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2022-07-01T04:32:39,513 adding 'glycopeptidepy/structure/modification/modification.py' 2022-07-01T04:32:39,520 adding 'glycopeptidepy/structure/modification/rule.py' 2022-07-01T04:32:39,525 adding 'glycopeptidepy/structure/modification/source.py' 2022-07-01T04:32:39,529 adding 'glycopeptidepy/structure/modification/target.py' 2022-07-01T04:32:39,532 adding 'glycopeptidepy/structure/modification/utils.py' 2022-07-01T04:32:39,536 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2022-07-01T04:32:39,538 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2022-07-01T04:32:39,541 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2022-07-01T04:32:39,706 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2022-07-01T04:32:39,748 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2022-07-01T04:32:39,752 adding 'glycopeptidepy/structure/sequence/__init__.py' 2022-07-01T04:32:39,756 adding 'glycopeptidepy/structure/sequence/base.py' 2022-07-01T04:32:39,760 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2022-07-01T04:32:39,763 adding 'glycopeptidepy/structure/sequence/implementation.py' 2022-07-01T04:32:39,766 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2022-07-01T04:32:39,770 adding 'glycopeptidepy/test/__init__.py' 2022-07-01T04:32:39,772 adding 'glycopeptidepy/test/common.py' 2022-07-01T04:32:39,775 adding 'glycopeptidepy/test/test_algorithms.py' 2022-07-01T04:32:39,778 adding 'glycopeptidepy/test/test_enzyme.py' 2022-07-01T04:32:39,781 adding 'glycopeptidepy/test/test_fasta.py' 2022-07-01T04:32:39,784 adding 'glycopeptidepy/test/test_fragment.py' 2022-07-01T04:32:39,786 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2022-07-01T04:32:39,789 adding 'glycopeptidepy/test/test_intervals.py' 2022-07-01T04:32:39,792 adding 'glycopeptidepy/test/test_modification.py' 2022-07-01T04:32:39,794 adding 'glycopeptidepy/test/test_residue.py' 2022-07-01T04:32:39,798 adding 'glycopeptidepy/test/test_sequence.py' 2022-07-01T04:32:39,801 adding 'glycopeptidepy/test/test_sequence_composition.py' 2022-07-01T04:32:39,803 adding 'glycopeptidepy/test/test_uniprot.py' 2022-07-01T04:32:39,805 adding 'glycopeptidepy/test/test_utils.py' 2022-07-01T04:32:39,809 adding 'glycopeptidepy/utils/__init__.py' 2022-07-01T04:32:39,811 adding 'glycopeptidepy/utils/collectiontools.py' 2022-07-01T04:32:39,817 adding 'glycopeptidepy/utils/intervals.py' 2022-07-01T04:32:39,819 adding 'glycopeptidepy/utils/iterators.py' 2022-07-01T04:32:39,822 adding 'glycopeptidepy/utils/memoize.py' 2022-07-01T04:32:39,825 adding 'glycopeptidepy/utils/sequence_tree.py' 2022-07-01T04:32:39,829 adding 'glycopeptidepy-0.0.17.dist-info/METADATA' 2022-07-01T04:32:39,830 adding 'glycopeptidepy-0.0.17.dist-info/WHEEL' 2022-07-01T04:32:39,832 adding 'glycopeptidepy-0.0.17.dist-info/top_level.txt' 2022-07-01T04:32:39,838 adding 'glycopeptidepy-0.0.17.dist-info/RECORD' 2022-07-01T04:32:40,012 removing build/bdist.linux-armv7l/wheel 2022-07-01T04:32:40,453 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2022-07-01T04:32:40,729 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.17-cp39-cp39-linux_armv7l.whl size=5080765 sha256=5c5ccea20c0777976036cc182cae83083ca149dcdee1db7c47c903b6a84ff431 2022-07-01T04:32:40,731 Stored in directory: /tmp/pip-ephem-wheel-cache-hikl2hgq/wheels/c6/b6/ed/523eb3ddd5a8670bbe682995d26b337b9bcb5a6da7f67789f7 2022-07-01T04:32:40,767 Successfully built glycopeptidepy 2022-07-01T04:32:41,110 Removed build tracker: '/tmp/pip-build-tracker-3vk3iban'