2022-07-01T15:30:00,157 Created temporary directory: /tmp/pip-ephem-wheel-cache-ugh9ugh_ 2022-07-01T15:30:00,163 Created temporary directory: /tmp/pip-build-tracker-xivrp3je 2022-07-01T15:30:00,163 Initialized build tracking at /tmp/pip-build-tracker-xivrp3je 2022-07-01T15:30:00,164 Created build tracker: /tmp/pip-build-tracker-xivrp3je 2022-07-01T15:30:00,164 Entered build tracker: /tmp/pip-build-tracker-xivrp3je 2022-07-01T15:30:00,165 Created temporary directory: /tmp/pip-wheel-snq4sojp 2022-07-01T15:30:00,236 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-01T15:30:00,249 2 location(s) to search for versions of glycopeptidepy: 2022-07-01T15:30:00,249 * https://pypi.org/simple/glycopeptidepy/ 2022-07-01T15:30:00,249 * https://www.piwheels.org/simple/glycopeptidepy/ 2022-07-01T15:30:00,250 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2022-07-01T15:30:00,251 Getting page https://pypi.org/simple/glycopeptidepy/ 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0.0.18 2022-07-01T15:30:00,470 Fetching project page and analyzing links: https://www.piwheels.org/simple/glycopeptidepy/ 2022-07-01T15:30:00,471 Getting page https://www.piwheels.org/simple/glycopeptidepy/ 2022-07-01T15:30:00,473 Found index url https://www.piwheels.org/simple 2022-07-01T15:30:00,731 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.18-cp37-cp37m-linux_armv7l.whl#sha256=10f1995fdeb567f3b897f890b7d052373c45907060903125dfd9660778d16d81 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,732 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.18-cp37-cp37m-linux_armv6l.whl#sha256=10f1995fdeb567f3b897f890b7d052373c45907060903125dfd9660778d16d81 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,732 Skipping link: No binaries permitted for glycopeptidepy: 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https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp39-cp39-linux_armv7l.whl#sha256=c021e99b73c9666b181c9dd63ac9d39f19ef71c9697048d57ccb8286137282ff (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,754 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp39-cp39-linux_armv6l.whl#sha256=c021e99b73c9666b181c9dd63ac9d39f19ef71c9697048d57ccb8286137282ff (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,754 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp37-cp37m-linux_armv7l.whl#sha256=ace8cdcff8419d11f23c192e7c892a66cd296647c08dde058db25f341105fbc0 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,755 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp37-cp37m-linux_armv6l.whl#sha256=ace8cdcff8419d11f23c192e7c892a66cd296647c08dde058db25f341105fbc0 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,755 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp35-cp35m-linux_armv7l.whl#sha256=4945c8721ffb13f91738a4a21977110625ea7035f4dceecfc12ff163494351bd (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,756 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.10-cp35-cp35m-linux_armv6l.whl#sha256=4945c8721ffb13f91738a4a21977110625ea7035f4dceecfc12ff163494351bd (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,756 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp39-cp39-linux_armv7l.whl#sha256=0fe3f95737f2249e76bb8a5232177acd2755d76b4e90ee0cd51e81318a5248be (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,757 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp39-cp39-linux_armv6l.whl#sha256=0fe3f95737f2249e76bb8a5232177acd2755d76b4e90ee0cd51e81318a5248be (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,757 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv7l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,758 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv6l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2022-07-01T15:30:00,758 Skipping link: not a file: https://www.piwheels.org/simple/glycopeptidepy/ 2022-07-01T15:30:00,759 Skipping link: not a file: https://pypi.org/simple/glycopeptidepy/ 2022-07-01T15:30:00,806 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2022-07-01T15:30:00,848 Collecting glycopeptidepy==0.0.18 2022-07-01T15:30:00,853 Created temporary directory: /tmp/pip-unpack-pm0j10ei 2022-07-01T15:30:00,958 Downloading glycopeptidepy-0.0.18.tar.gz (1.3 MB) 2022-07-01T15:30:02,859 Added glycopeptidepy==0.0.18 from https://files.pythonhosted.org/packages/3a/0c/64c494095199ad19f57f205f7784b87e240a5ab6f18dd0376aac8697a89a/glycopeptidepy-0.0.18.tar.gz#sha256=6100be5f140929ded01d2df1c3bacbd52720606053377272ba075f3dce4478e7 to build tracker '/tmp/pip-build-tracker-xivrp3je' 2022-07-01T15:30:02,870 Created temporary directory: /tmp/pip-build-env-h3dxb3js 2022-07-01T15:30:02,891 Created temporary directory: /tmp/pip-standalone-pip-1eliy9sm 2022-07-01T15:30:05,205 Installing build dependencies: started 2022-07-01T15:30:05,207 Running command pip subprocess to install build dependencies 2022-07-01T15:30:16,504 Using pip 22.1.2 from /tmp/pip-standalone-pip-1eliy9sm/__env_pip__.zip/pip (python 3.9) 2022-07-01T15:30:18,130 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-01T15:30:22,301 Collecting setuptools 2022-07-01T15:30:22,584 Using cached https://www.piwheels.org/simple/setuptools/setuptools-62.6.0-py3-none-any.whl (1.2 MB) 2022-07-01T15:30:23,254 Collecting wheel 2022-07-01T15:30:23,289 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-07-01T15:30:26,789 Collecting Cython 2022-07-01T15:30:27,770 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.30-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-07-01T15:30:28,648 Collecting glypy 2022-07-01T15:30:28,689 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.6-cp39-cp39-linux_armv7l.whl (1.5 MB) 2022-07-01T15:30:29,119 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 3.6 MB/s eta 0:00:00 2022-07-01T15:30:29,601 Collecting hjson 2022-07-01T15:30:29,650 Downloading https://www.piwheels.org/simple/hjson/hjson-3.0.2-py3-none-any.whl (54 kB) 2022-07-01T15:30:29,692 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.2/54.2 kB 1.9 MB/s eta 0:00:00 2022-07-01T15:30:29,974 Collecting six 2022-07-01T15:30:30,005 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2022-07-01T15:30:37,086 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2022-07-01T15:30:37,882 changing mode of /tmp/pip-build-env-h3dxb3js/overlay/bin/wheel to 755 2022-07-01T15:30:49,620 changing mode of /tmp/pip-build-env-h3dxb3js/overlay/bin/cygdb to 755 2022-07-01T15:30:49,624 changing mode of /tmp/pip-build-env-h3dxb3js/overlay/bin/cython to 755 2022-07-01T15:30:49,629 changing mode of /tmp/pip-build-env-h3dxb3js/overlay/bin/cythonize to 755 2022-07-01T15:30:52,590 Successfully installed Cython-0.29.30 glypy-1.0.6 hjson-3.0.2 setuptools-62.6.0 six-1.16.0 wheel-0.37.1 2022-07-01T15:30:53,385 Installing build dependencies: finished with status 'done' 2022-07-01T15:30:53,433 Getting requirements to build wheel: started 2022-07-01T15:30:53,435 Running command Getting requirements to build wheel 2022-07-01T15:30:59,381 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/base.pxd 2022-07-01T15:30:59,382 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:02,050 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/fragment.pxd 2022-07-01T15:31:02,050 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:08,049 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2022-07-01T15:31:08,049 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:10,607 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2022-07-01T15:31:10,608 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:14,402 warning: glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx:1034:8: local variable 'total_core_count' referenced before assignment 2022-07-01T15:31:16,701 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/modification/rule.pxd 2022-07-01T15:31:16,702 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:18,251 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2022-07-01T15:31:18,252 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:23,361 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/glycan.pxd 2022-07-01T15:31:23,362 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:26,069 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/modification/modification.pxd 2022-07-01T15:31:26,069 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:27,026 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/modification/source.pxd 2022-07-01T15:31:27,026 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:28,154 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8/glycopeptidepy/_c/structure/sequence_methods.pxd 2022-07-01T15:31:28,155 tree = Parsing.p_module(s, pxd, full_module_name) 2022-07-01T15:31:32,257 Compiling glycopeptidepy/_c/structure/base.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-07-01T15:31:32,257 Compiling glycopeptidepy/_c/structure/fragment.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-07-01T15:31:32,258 Compiling glycopeptidepy/_c/structure/glycan.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T15:31:32,258 Compiling glycopeptidepy/_c/structure/sequence_methods.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T15:31:32,258 Compiling glycopeptidepy/_c/structure/modification/rule.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T15:31:32,259 Compiling glycopeptidepy/_c/structure/modification/modification.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T15:31:32,259 Compiling glycopeptidepy/_c/structure/modification/source.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T15:31:32,259 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-07-01T15:31:32,260 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2022-07-01T15:31:32,260 Compiling glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it depends on /tmp/pip-build-env-h3dxb3js/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2022-07-01T15:31:32,260 [ 1/10] Cythonizing glycopeptidepy/_c/structure/base.pyx 2022-07-01T15:31:32,261 [ 2/10] Cythonizing glycopeptidepy/_c/structure/fragment.pyx 2022-07-01T15:31:32,261 [ 3/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2022-07-01T15:31:32,261 [ 4/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2022-07-01T15:31:32,262 [ 5/10] Cythonizing glycopeptidepy/_c/structure/modification/rule.pyx 2022-07-01T15:31:32,262 [ 6/10] Cythonizing glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2022-07-01T15:31:32,262 [ 7/10] Cythonizing glycopeptidepy/_c/structure/glycan.pyx 2022-07-01T15:31:32,262 [ 8/10] Cythonizing glycopeptidepy/_c/structure/modification/modification.pyx 2022-07-01T15:31:32,263 [ 9/10] Cythonizing glycopeptidepy/_c/structure/modification/source.pyx 2022-07-01T15:31:32,263 [10/10] Cythonizing glycopeptidepy/_c/structure/sequence_methods.pyx 2022-07-01T15:31:37,272 running egg_info 2022-07-01T15:31:37,880 writing glycopeptidepy.egg-info/PKG-INFO 2022-07-01T15:31:38,453 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2022-07-01T15:31:41,309 writing requirements to glycopeptidepy.egg-info/requires.txt 2022-07-01T15:31:41,880 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2022-07-01T15:31:42,620 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T15:31:42,634 reading manifest template 'MANIFEST.in' 2022-07-01T15:31:42,636 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-07-01T15:31:42,636 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-07-01T15:31:43,072 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T15:31:43,543 Getting requirements to build wheel: finished with status 'done' 2022-07-01T15:31:43,568 Created temporary directory: /tmp/pip-modern-metadata-mnr54czj 2022-07-01T15:31:43,573 Preparing metadata (pyproject.toml): started 2022-07-01T15:31:43,579 Running command Preparing metadata (pyproject.toml) 2022-07-01T15:31:52,614 running dist_info 2022-07-01T15:31:53,239 creating /tmp/pip-modern-metadata-mnr54czj/glycopeptidepy.egg-info 2022-07-01T15:31:53,835 writing /tmp/pip-modern-metadata-mnr54czj/glycopeptidepy.egg-info/PKG-INFO 2022-07-01T15:31:54,402 writing dependency_links to /tmp/pip-modern-metadata-mnr54czj/glycopeptidepy.egg-info/dependency_links.txt 2022-07-01T15:31:57,218 writing requirements to /tmp/pip-modern-metadata-mnr54czj/glycopeptidepy.egg-info/requires.txt 2022-07-01T15:31:57,774 writing top-level names to /tmp/pip-modern-metadata-mnr54czj/glycopeptidepy.egg-info/top_level.txt 2022-07-01T15:31:57,777 writing manifest file '/tmp/pip-modern-metadata-mnr54czj/glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T15:31:58,528 reading manifest file '/tmp/pip-modern-metadata-mnr54czj/glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T15:31:58,531 reading manifest template 'MANIFEST.in' 2022-07-01T15:31:58,532 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-07-01T15:31:58,533 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-07-01T15:31:58,960 writing manifest file '/tmp/pip-modern-metadata-mnr54czj/glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T15:31:58,963 creating '/tmp/pip-modern-metadata-mnr54czj/glycopeptidepy-0.0.18.dist-info' 2022-07-01T15:31:59,486 Preparing metadata (pyproject.toml): finished with status 'done' 2022-07-01T15:31:59,500 Source in /tmp/pip-wheel-snq4sojp/glycopeptidepy_741e80f517904bfd9e9e82cfca2ffaa8 has version 0.0.18, which satisfies requirement glycopeptidepy==0.0.18 from https://files.pythonhosted.org/packages/3a/0c/64c494095199ad19f57f205f7784b87e240a5ab6f18dd0376aac8697a89a/glycopeptidepy-0.0.18.tar.gz#sha256=6100be5f140929ded01d2df1c3bacbd52720606053377272ba075f3dce4478e7 2022-07-01T15:31:59,502 Removed glycopeptidepy==0.0.18 from https://files.pythonhosted.org/packages/3a/0c/64c494095199ad19f57f205f7784b87e240a5ab6f18dd0376aac8697a89a/glycopeptidepy-0.0.18.tar.gz#sha256=6100be5f140929ded01d2df1c3bacbd52720606053377272ba075f3dce4478e7 from build tracker '/tmp/pip-build-tracker-xivrp3je' 2022-07-01T15:31:59,511 Created temporary directory: /tmp/pip-unpack-7ulwrwx0 2022-07-01T15:31:59,512 Building wheels for collected packages: glycopeptidepy 2022-07-01T15:31:59,521 Created temporary directory: /tmp/pip-wheel-ka9c29g6 2022-07-01T15:31:59,522 Destination directory: /tmp/pip-wheel-ka9c29g6 2022-07-01T15:31:59,527 Building wheel for glycopeptidepy (pyproject.toml): started 2022-07-01T15:31:59,529 Running command Building wheel for glycopeptidepy (pyproject.toml) 2022-07-01T15:32:08,109 running bdist_wheel 2022-07-01T15:32:08,217 running build 2022-07-01T15:32:08,217 running build_py 2022-07-01T15:32:08,829 creating build 2022-07-01T15:32:08,830 creating build/lib.linux-armv7l-cpython-39 2022-07-01T15:32:08,831 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T15:32:08,833 copying glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T15:32:08,837 copying glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T15:32:08,841 copying glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T15:32:08,849 copying glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T15:32:08,854 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T15:32:08,856 copying glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T15:32:08,861 copying glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T15:32:08,863 copying glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T15:32:08,868 copying glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T15:32:08,872 copying glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T15:32:08,875 copying glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T15:32:08,879 copying glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2022-07-01T15:32:08,885 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,886 copying glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,890 copying glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,893 copying glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,898 copying glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,902 copying glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,906 copying glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,909 copying glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,913 copying glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,917 copying glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,920 copying glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2022-07-01T15:32:08,925 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:08,926 copying glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:08,929 copying glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:08,933 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T15:32:08,934 copying glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T15:32:08,939 copying glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T15:32:08,943 copying glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T15:32:08,946 copying glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T15:32:08,949 copying glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T15:32:08,952 copying glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2022-07-01T15:32:08,957 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,959 copying glycopeptidepy/test/test_sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,962 copying glycopeptidepy/test/test_enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,965 copying glycopeptidepy/test/test_uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,968 copying glycopeptidepy/test/common.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,971 copying glycopeptidepy/test/test_utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,974 copying glycopeptidepy/test/test_intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,978 copying glycopeptidepy/test/test_fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,981 copying glycopeptidepy/test/test_fragmentation_strategy.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,985 copying glycopeptidepy/test/test_modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,989 copying glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,991 copying glycopeptidepy/test/test_fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,994 copying glycopeptidepy/test/test_residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:08,997 copying glycopeptidepy/test/test_algorithms.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:09,000 copying glycopeptidepy/test/test_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2022-07-01T15:32:09,006 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T15:32:09,007 copying glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T15:32:09,012 copying glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T15:32:09,015 copying glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T15:32:09,018 copying glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2022-07-01T15:32:09,023 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,024 copying glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,029 copying glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,032 copying glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,036 copying glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,039 copying glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,043 copying glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,048 copying glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,051 copying glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2022-07-01T15:32:09,058 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T15:32:09,059 copying glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T15:32:09,063 copying glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T15:32:09,067 copying glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T15:32:09,070 copying glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T15:32:09,074 copying glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2022-07-01T15:32:09,080 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:32:09,082 copying glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:32:09,085 copying glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:32:09,091 copying glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:32:09,097 copying glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:32:09,101 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T15:32:09,103 copying glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T15:32:09,106 copying glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T15:32:09,111 copying glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T15:32:09,115 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:09,117 copying glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:09,121 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:09,123 copying glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:09,127 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:09,128 copying glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:09,131 running egg_info 2022-07-01T15:32:10,346 writing glycopeptidepy.egg-info/PKG-INFO 2022-07-01T15:32:10,911 writing dependency_links to glycopeptidepy.egg-info/dependency_links.txt 2022-07-01T15:32:13,719 writing requirements to glycopeptidepy.egg-info/requires.txt 2022-07-01T15:32:14,282 writing top-level names to glycopeptidepy.egg-info/top_level.txt 2022-07-01T15:32:14,353 reading manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T15:32:14,364 reading manifest template 'MANIFEST.in' 2022-07-01T15:32:14,365 warning: no files found matching '*.csv' under directory 'glycopeptidepy/structure/data' 2022-07-01T15:32:14,365 warning: no files found matching '*.json' under directory 'glycopeptidepy/structure/data' 2022-07-01T15:32:14,806 writing manifest file 'glycopeptidepy.egg-info/SOURCES.txt' 2022-07-01T15:32:14,828 copying glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,859 copying glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,863 copying glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,883 copying glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,887 copying glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,890 copying glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,894 copying glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,898 copying glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,940 copying glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,944 copying glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,949 copying glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,975 copying glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,979 copying glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:14,983 copying glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T15:32:14,988 copying glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2022-07-01T15:32:15,058 copying glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,116 copying glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,120 copying glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,125 copying glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,141 copying glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,145 copying glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,148 copying glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,218 copying glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,222 copying glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,227 copying glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,280 copying glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,284 copying glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,288 copying glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,338 copying glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,342 copying glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:15,348 copying glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,369 copying glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,373 copying glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,378 copying glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,414 copying glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,418 copying glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,422 copying glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,443 copying glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,447 copying glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,451 copying glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:32:15,455 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,484 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,488 copying glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,492 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,566 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,570 copying glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,577 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,644 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,648 copying glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:32:15,673 running build_ext 2022-07-01T15:32:15,686 building 'glycopeptidepy._c.collectiontools' extension 2022-07-01T15:32:15,687 creating build/temp.linux-armv7l-cpython-39 2022-07-01T15:32:15,688 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy 2022-07-01T15:32:15,689 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c 2022-07-01T15:32:15,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.o 2022-07-01T15:32:24,891 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:32:25,160 building 'glycopeptidepy._c.count_table' extension 2022-07-01T15:32:25,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.o 2022-07-01T15:32:27,295 glycopeptidepy/_c/count_table.c:2393:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2022-07-01T15:32:27,296 2393 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2022-07-01T15:32:27,296 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-07-01T15:32:27,298 glycopeptidepy/_c/count_table.c:2135:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2022-07-01T15:32:27,298 2135 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2022-07-01T15:32:27,298 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-07-01T15:32:27,300 glycopeptidepy/_c/count_table.c:1905:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2022-07-01T15:32:27,300 1905 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2022-07-01T15:32:27,301 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-07-01T15:32:45,470 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:32:45,775 building 'glycopeptidepy._c.parser' extension 2022-07-01T15:32:45,778 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./glycopeptidepy/_c -I/usr/include/python3.9 -c glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.o 2022-07-01T15:32:46,509 In file included from glycopeptidepy/_c/parser.c:717: 2022-07-01T15:32:46,509 glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2022-07-01T15:32:46,510 38 | #define PyInt_Check PyLong_Check 2022-07-01T15:32:46,510 | 2022-07-01T15:32:46,516 glycopeptidepy/_c/parser.c:624: note: this is the location of the previous definition 2022-07-01T15:32:46,516 624 | #define PyInt_Check(op) PyLong_Check(op) 2022-07-01T15:32:46,516 | 2022-07-01T15:32:46,517 In file included from glycopeptidepy/_c/parser.c:717: 2022-07-01T15:32:46,517 glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2022-07-01T15:32:46,518 39 | #define PyInt_CheckExact PyLong_CheckExact 2022-07-01T15:32:46,518 | 2022-07-01T15:32:46,519 glycopeptidepy/_c/parser.c:625: note: this is the location of the previous definition 2022-07-01T15:32:46,519 625 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2022-07-01T15:32:46,519 | 2022-07-01T15:32:46,543 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2022-07-01T15:32:46,546 glycopeptidepy/_c/parser.c:1958:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T15:32:46,546 1958 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2022-07-01T15:32:46,546 | ^ 2022-07-01T15:32:46,615 glycopeptidepy/_c/parser.c: In function ‘__pyx_fuse_1__pyx_f_14glycopeptidepy_2_c_6parser__sequence_tokenizer’: 2022-07-01T15:32:46,621 glycopeptidepy/_c/parser.c:4448:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-07-01T15:32:46,621 4448 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 295, __pyx_L1_error) 2022-07-01T15:32:46,621 | ^~ 2022-07-01T15:32:46,638 glycopeptidepy/_c/parser.c:4875:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-07-01T15:32:46,639 4875 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 328, __pyx_L1_error) 2022-07-01T15:32:46,639 | ^~ 2022-07-01T15:32:46,651 glycopeptidepy/_c/parser.c:5081:64: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-07-01T15:32:46,652 5081 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 344, __pyx_L1_error) 2022-07-01T15:32:46,652 | ^~ 2022-07-01T15:32:46,679 glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2022-07-01T15:32:46,687 glycopeptidepy/_c/parser.c:5944:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T15:32:46,687 5944 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2022-07-01T15:32:46,688 | ^ 2022-07-01T15:32:59,180 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:32:59,452 building 'glycopeptidepy._c.structure.base' extension 2022-07-01T15:32:59,453 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2022-07-01T15:32:59,455 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.o 2022-07-01T15:33:28,158 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:33:28,502 building 'glycopeptidepy._c.structure.fragment' extension 2022-07-01T15:33:28,503 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I./glycopeptidepy/_c -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.o 2022-07-01T15:33:29,248 In file included from glycopeptidepy/_c/structure/fragment.c:718: 2022-07-01T15:33:29,249 ./glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2022-07-01T15:33:29,249 38 | #define PyInt_Check PyLong_Check 2022-07-01T15:33:29,249 | 2022-07-01T15:33:29,265 glycopeptidepy/_c/structure/fragment.c:624: note: this is the location of the previous definition 2022-07-01T15:33:29,265 624 | #define PyInt_Check(op) PyLong_Check(op) 2022-07-01T15:33:29,266 | 2022-07-01T15:33:29,266 In file included from glycopeptidepy/_c/structure/fragment.c:718: 2022-07-01T15:33:29,267 ./glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2022-07-01T15:33:29,267 39 | #define PyInt_CheckExact PyLong_CheckExact 2022-07-01T15:33:29,267 | 2022-07-01T15:33:29,268 glycopeptidepy/_c/structure/fragment.c:625: note: this is the location of the previous definition 2022-07-01T15:33:29,268 625 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2022-07-01T15:33:29,269 | 2022-07-01T15:33:29,325 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2022-07-01T15:33:29,330 glycopeptidepy/_c/structure/fragment.c:3197:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T15:33:29,330 3197 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2022-07-01T15:33:29,330 | ^ 2022-07-01T15:33:29,334 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2022-07-01T15:33:29,338 glycopeptidepy/_c/structure/fragment.c:3426:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T15:33:29,338 3426 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2022-07-01T15:33:29,339 | ^ 2022-07-01T15:33:29,593 glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2022-07-01T15:33:29,606 glycopeptidepy/_c/structure/fragment.c:10329:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T15:33:29,606 10329 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-07-01T15:33:29,607 | ^ 2022-07-01T15:33:29,629 glycopeptidepy/_c/structure/fragment.c:10644:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T15:33:29,629 10644 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-07-01T15:33:29,630 | ^ 2022-07-01T15:33:29,645 glycopeptidepy/_c/structure/fragment.c:10818:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T15:33:29,645 10818 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-07-01T15:33:29,645 | ^ 2022-07-01T15:33:29,661 glycopeptidepy/_c/structure/fragment.c:10997:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2022-07-01T15:33:29,661 10997 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2022-07-01T15:33:29,662 | ^ 2022-07-01T15:34:16,558 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:34:16,970 building 'glycopeptidepy._c.structure.constants' extension 2022-07-01T15:34:16,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.o 2022-07-01T15:34:24,186 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:34:24,450 building 'glycopeptidepy._c.structure.glycan' extension 2022-07-01T15:34:24,451 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.o 2022-07-01T15:34:25,227 glycopeptidepy/_c/structure/glycan.c: In function ‘__pyx_fuse_0__pyx_f_14glycopeptidepy_2_c_9structure_6glycan_22GlycanCompositionProxy__create’: 2022-07-01T15:34:25,230 glycopeptidepy/_c/structure/glycan.c:2557:58: warning: self-comparison always evaluates to true [-Wtautological-compare] 2022-07-01T15:34:25,231 2557 | if (!(likely(PyString_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "str", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 28, __pyx_L1_error) 2022-07-01T15:34:25,231 | ^~ 2022-07-01T15:34:53,116 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:34:53,464 building 'glycopeptidepy._c.structure.sequence_methods' extension 2022-07-01T15:34:53,466 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.o 2022-07-01T15:34:54,616 glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2022-07-01T15:34:54,633 glycopeptidepy/_c/structure/sequence_methods.c:11748:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-07-01T15:34:54,633 11748 | __pyx_t_2 = ((__pyx_v_position_ >= ((struct __pyx_vtabstruct_14glycopeptidepy_2_c_9structure_16sequence_methods__PeptideSequenceCore *)__pyx_v_self->__pyx_base.__pyx_vtab)->get_size(__pyx_v_self)) != 0); 2022-07-01T15:34:54,634 | ^~ 2022-07-01T15:35:22,518 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:35:22,851 building 'glycopeptidepy._c.structure.modification.rule' extension 2022-07-01T15:35:22,852 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2022-07-01T15:35:22,854 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.o 2022-07-01T15:35:41,122 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:35:41,422 building 'glycopeptidepy._c.structure.modification.modification' extension 2022-07-01T15:35:41,424 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.o 2022-07-01T15:35:50,969 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:35:51,236 building 'glycopeptidepy._c.structure.modification.source' extension 2022-07-01T15:35:51,238 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.o 2022-07-01T15:36:01,071 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:36:01,342 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2022-07-01T15:36:01,343 creating build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:36:01,345 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2022-07-01T15:36:11,020 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:36:11,285 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2022-07-01T15:36:11,287 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2022-07-01T15:36:52,909 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:36:53,299 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2022-07-01T15:36:53,300 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2022-07-01T15:36:54,365 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2022-07-01T15:36:54,377 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9487:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2022-07-01T15:36:54,378 9487 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2022-07-01T15:36:54,378 | ^ 2022-07-01T15:36:54,390 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9503:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2022-07-01T15:36:54,391 9503 | for (__pyx_t_10 = 1; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2022-07-01T15:36:54,391 | ^ 2022-07-01T15:36:54,590 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2022-07-01T15:36:54,608 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13595:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-07-01T15:36:54,609 13595 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-07-01T15:36:54,609 | ^ 2022-07-01T15:36:54,637 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2022-07-01T15:36:54,656 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14219:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-07-01T15:36:54,657 14219 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2022-07-01T15:36:54,657 | ^ 2022-07-01T15:36:54,686 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13977:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2022-07-01T15:36:54,686 13977 | int __pyx_t_15; 2022-07-01T15:36:54,686 | ^~~~~~~~~~ 2022-07-01T15:36:54,761 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2022-07-01T15:36:54,783 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:16026:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2022-07-01T15:36:54,783 16026 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2022-07-01T15:36:54,784 | ^ 2022-07-01T15:36:54,816 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:15784:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2022-07-01T15:36:54,816 15784 | int __pyx_t_15; 2022-07-01T15:36:54,816 | ^~~~~~~~~~ 2022-07-01T15:36:54,879 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2022-07-01T15:36:54,902 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17269:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-07-01T15:36:54,903 17269 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-07-01T15:36:54,903 | ^ 2022-07-01T15:36:54,928 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17327:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-07-01T15:36:54,928 17327 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-07-01T15:36:54,928 | ^ 2022-07-01T15:36:54,953 glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17385:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-07-01T15:36:54,953 17385 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2022-07-01T15:36:54,954 | ^ 2022-07-01T15:37:40,810 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:37:41,218 building 'glycopeptidepy._c.algorithm' extension 2022-07-01T15:37:41,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.o 2022-07-01T15:38:00,833 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so 2022-07-01T15:38:02,359 installing to build/bdist.linux-armv7l/wheel 2022-07-01T15:38:02,360 running install 2022-07-01T15:38:02,422 running install_lib 2022-07-01T15:38:03,018 creating build/bdist.linux-armv7l 2022-07-01T15:38:03,019 creating build/bdist.linux-armv7l/wheel 2022-07-01T15:38:03,022 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T15:38:03,026 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T15:38:03,029 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T15:38:03,031 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T15:38:03,036 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T15:38:03,041 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T15:38:03,045 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2022-07-01T15:38:03,048 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T15:38:03,052 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T15:38:03,055 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T15:38:03,061 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T15:38:03,065 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T15:38:03,069 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T15:38:03,074 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2022-07-01T15:38:03,078 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T15:38:03,083 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,085 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,090 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,094 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T15:38:03,096 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T15:38:03,100 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T15:38:03,103 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T15:38:03,109 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T15:38:03,199 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2022-07-01T15:38:03,202 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,206 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,210 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,214 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,217 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,221 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,226 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,229 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2022-07-01T15:38:03,234 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,238 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,244 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,249 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,255 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T15:38:03,257 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T15:38:03,262 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T15:38:03,267 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T15:38:03,271 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T15:38:03,275 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2022-07-01T15:38:03,279 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,282 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,287 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:38:03,288 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:38:03,292 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:38:03,297 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:38:03,303 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2022-07-01T15:38:03,306 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,310 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,313 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2022-07-01T15:38:03,316 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T15:38:03,321 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T15:38:03,325 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2022-07-01T15:38:03,329 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:03,331 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:03,349 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:03,353 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:03,357 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:03,376 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:03,417 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:03,421 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:03,463 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,464 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,470 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,517 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,523 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,525 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,529 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,550 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,553 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,575 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,578 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,581 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,584 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,604 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,624 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,627 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,630 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,664 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,667 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2022-07-01T15:38:03,705 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,776 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,826 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,877 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,880 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,923 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,940 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:03,943 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,031 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,034 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,037 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,040 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,045 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,049 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,053 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,069 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,117 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,118 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,193 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,196 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,201 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,223 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,299 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,318 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,320 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,390 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,456 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,459 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,466 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,470 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2022-07-01T15:38:04,474 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,552 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2022-07-01T15:38:04,555 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,578 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,583 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,586 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,605 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,608 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,650 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,653 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,657 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,692 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,696 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,700 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2022-07-01T15:38:04,705 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T15:38:04,706 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T15:38:04,711 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T15:38:04,715 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T15:38:04,719 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T15:38:04,722 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T15:38:04,725 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2022-07-01T15:38:04,730 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,731 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,735 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,738 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,741 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/common.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,745 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,748 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,751 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,756 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fragmentation_strategy.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,760 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,763 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,766 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,770 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,773 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_algorithms.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,776 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/test_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2022-07-01T15:38:04,780 running install_egg_info 2022-07-01T15:38:05,388 Copying glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.18-py3.9.egg-info 2022-07-01T15:38:05,417 running install_scripts 2022-07-01T15:38:05,610 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.18.dist-info/WHEEL 2022-07-01T15:38:05,615 creating '/tmp/pip-wheel-ka9c29g6/tmpsu81m1on/glycopeptidepy-0.0.18-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-07-01T15:38:05,620 adding 'glycopeptidepy/__init__.py' 2022-07-01T15:38:05,625 adding 'glycopeptidepy/algorithm.py' 2022-07-01T15:38:05,629 adding 'glycopeptidepy/enzyme.py' 2022-07-01T15:38:05,632 adding 'glycopeptidepy/version.py' 2022-07-01T15:38:05,635 adding 'glycopeptidepy/_c/__init__.py' 2022-07-01T15:38:05,734 adding 'glycopeptidepy/_c/algorithm.c' 2022-07-01T15:38:06,056 adding 'glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:06,072 adding 'glycopeptidepy/_c/algorithm.pyx' 2022-07-01T15:38:06,133 adding 'glycopeptidepy/_c/collectiontools.c' 2022-07-01T15:38:06,279 adding 'glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:06,287 adding 'glycopeptidepy/_c/collectiontools.pxd' 2022-07-01T15:38:06,289 adding 'glycopeptidepy/_c/collectiontools.pyx' 2022-07-01T15:38:06,292 adding 'glycopeptidepy/_c/compat.h' 2022-07-01T15:38:06,294 adding 'glycopeptidepy/_c/compat.pxd' 2022-07-01T15:38:06,411 adding 'glycopeptidepy/_c/count_table.c' 2022-07-01T15:38:06,737 adding 'glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:06,752 adding 'glycopeptidepy/_c/count_table.pxd' 2022-07-01T15:38:06,759 adding 'glycopeptidepy/_c/count_table.pyx' 2022-07-01T15:38:06,762 adding 'glycopeptidepy/_c/cythonize.py' 2022-07-01T15:38:06,837 adding 'glycopeptidepy/_c/parser.c' 2022-07-01T15:38:07,016 adding 'glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:07,025 adding 'glycopeptidepy/_c/parser.pxd' 2022-07-01T15:38:07,029 adding 'glycopeptidepy/_c/parser.pyx' 2022-07-01T15:38:07,033 adding 'glycopeptidepy/_c/structure/__init__.py' 2022-07-01T15:38:07,172 adding 'glycopeptidepy/_c/structure/base.c' 2022-07-01T15:38:07,634 adding 'glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:07,654 adding 'glycopeptidepy/_c/structure/base.pxd' 2022-07-01T15:38:07,658 adding 'glycopeptidepy/_c/structure/base.pyx' 2022-07-01T15:38:07,707 adding 'glycopeptidepy/_c/structure/constants.c' 2022-07-01T15:38:07,825 adding 'glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:07,831 adding 'glycopeptidepy/_c/structure/constants.pxd' 2022-07-01T15:38:07,834 adding 'glycopeptidepy/_c/structure/constants.pyx' 2022-07-01T15:38:08,051 adding 'glycopeptidepy/_c/structure/fragment.c' 2022-07-01T15:38:08,776 adding 'glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:08,808 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2022-07-01T15:38:08,815 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2022-07-01T15:38:08,948 adding 'glycopeptidepy/_c/structure/glycan.c' 2022-07-01T15:38:09,408 adding 'glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:09,429 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2022-07-01T15:38:09,433 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2022-07-01T15:38:09,574 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2022-07-01T15:38:10,025 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:10,045 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2022-07-01T15:38:10,052 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2022-07-01T15:38:10,056 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2022-07-01T15:38:10,122 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2022-07-01T15:38:10,278 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:10,286 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2022-07-01T15:38:10,288 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2022-07-01T15:38:10,499 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2022-07-01T15:38:11,187 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:11,218 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2022-07-01T15:38:11,227 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2022-07-01T15:38:11,419 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2022-07-01T15:38:12,048 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:12,076 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2022-07-01T15:38:12,082 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2022-07-01T15:38:12,086 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2022-07-01T15:38:12,148 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2022-07-01T15:38:12,305 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:12,313 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2022-07-01T15:38:12,316 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2022-07-01T15:38:12,410 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2022-07-01T15:38:12,704 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:12,719 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2022-07-01T15:38:12,722 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2022-07-01T15:38:12,786 adding 'glycopeptidepy/_c/structure/modification/source.c' 2022-07-01T15:38:12,949 adding 'glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so' 2022-07-01T15:38:12,958 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2022-07-01T15:38:12,960 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2022-07-01T15:38:12,963 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2022-07-01T15:38:12,966 adding 'glycopeptidepy/io/__init__.py' 2022-07-01T15:38:12,970 adding 'glycopeptidepy/io/annotation.py' 2022-07-01T15:38:12,979 adding 'glycopeptidepy/io/fasta.py' 2022-07-01T15:38:12,982 adding 'glycopeptidepy/io/mzid.py' 2022-07-01T15:38:12,985 adding 'glycopeptidepy/io/nextprot.py' 2022-07-01T15:38:12,991 adding 'glycopeptidepy/io/uniprot.py' 2022-07-01T15:38:12,994 adding 'glycopeptidepy/io/utils.py' 2022-07-01T15:38:12,997 adding 'glycopeptidepy/io/cv/__init__.py' 2022-07-01T15:38:13,001 adding 'glycopeptidepy/io/cv/peff.py' 2022-07-01T15:38:13,004 adding 'glycopeptidepy/io/cv/term.py' 2022-07-01T15:38:13,007 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2022-07-01T15:38:13,011 adding 'glycopeptidepy/structure/__init__.py' 2022-07-01T15:38:13,014 adding 'glycopeptidepy/structure/base.py' 2022-07-01T15:38:13,016 adding 'glycopeptidepy/structure/composition.py' 2022-07-01T15:38:13,018 adding 'glycopeptidepy/structure/constants.py' 2022-07-01T15:38:13,024 adding 'glycopeptidepy/structure/fragment.py' 2022-07-01T15:38:13,029 adding 'glycopeptidepy/structure/glycan.py' 2022-07-01T15:38:13,034 adding 'glycopeptidepy/structure/parser.py' 2022-07-01T15:38:13,038 adding 'glycopeptidepy/structure/residue.py' 2022-07-01T15:38:13,042 adding 'glycopeptidepy/structure/sequence_composition.py' 2022-07-01T15:38:13,045 adding 'glycopeptidepy/structure/terminal_group.py' 2022-07-01T15:38:13,048 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2022-07-01T15:38:13,051 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2022-07-01T15:38:13,061 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2022-07-01T15:38:13,067 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2022-07-01T15:38:13,072 adding 'glycopeptidepy/structure/modification/__init__.py' 2022-07-01T15:38:13,074 adding 'glycopeptidepy/structure/modification/descriptors.py' 2022-07-01T15:38:13,079 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2022-07-01T15:38:13,082 adding 'glycopeptidepy/structure/modification/modification.py' 2022-07-01T15:38:13,090 adding 'glycopeptidepy/structure/modification/rule.py' 2022-07-01T15:38:13,095 adding 'glycopeptidepy/structure/modification/source.py' 2022-07-01T15:38:13,099 adding 'glycopeptidepy/structure/modification/target.py' 2022-07-01T15:38:13,102 adding 'glycopeptidepy/structure/modification/utils.py' 2022-07-01T15:38:13,106 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2022-07-01T15:38:13,108 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2022-07-01T15:38:13,111 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2022-07-01T15:38:13,274 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2022-07-01T15:38:13,316 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2022-07-01T15:38:13,321 adding 'glycopeptidepy/structure/sequence/__init__.py' 2022-07-01T15:38:13,325 adding 'glycopeptidepy/structure/sequence/base.py' 2022-07-01T15:38:13,328 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2022-07-01T15:38:13,332 adding 'glycopeptidepy/structure/sequence/implementation.py' 2022-07-01T15:38:13,335 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2022-07-01T15:38:13,339 adding 'glycopeptidepy/test/__init__.py' 2022-07-01T15:38:13,341 adding 'glycopeptidepy/test/common.py' 2022-07-01T15:38:13,344 adding 'glycopeptidepy/test/test_algorithms.py' 2022-07-01T15:38:13,346 adding 'glycopeptidepy/test/test_enzyme.py' 2022-07-01T15:38:13,350 adding 'glycopeptidepy/test/test_fasta.py' 2022-07-01T15:38:13,352 adding 'glycopeptidepy/test/test_fragment.py' 2022-07-01T15:38:13,355 adding 'glycopeptidepy/test/test_fragmentation_strategy.py' 2022-07-01T15:38:13,358 adding 'glycopeptidepy/test/test_intervals.py' 2022-07-01T15:38:13,360 adding 'glycopeptidepy/test/test_modification.py' 2022-07-01T15:38:13,363 adding 'glycopeptidepy/test/test_residue.py' 2022-07-01T15:38:13,367 adding 'glycopeptidepy/test/test_sequence.py' 2022-07-01T15:38:13,370 adding 'glycopeptidepy/test/test_sequence_composition.py' 2022-07-01T15:38:13,372 adding 'glycopeptidepy/test/test_uniprot.py' 2022-07-01T15:38:13,374 adding 'glycopeptidepy/test/test_utils.py' 2022-07-01T15:38:13,378 adding 'glycopeptidepy/utils/__init__.py' 2022-07-01T15:38:13,380 adding 'glycopeptidepy/utils/collectiontools.py' 2022-07-01T15:38:13,385 adding 'glycopeptidepy/utils/intervals.py' 2022-07-01T15:38:13,388 adding 'glycopeptidepy/utils/iterators.py' 2022-07-01T15:38:13,391 adding 'glycopeptidepy/utils/memoize.py' 2022-07-01T15:38:13,393 adding 'glycopeptidepy/utils/sequence_tree.py' 2022-07-01T15:38:13,398 adding 'glycopeptidepy-0.0.18.dist-info/METADATA' 2022-07-01T15:38:13,399 adding 'glycopeptidepy-0.0.18.dist-info/WHEEL' 2022-07-01T15:38:13,401 adding 'glycopeptidepy-0.0.18.dist-info/top_level.txt' 2022-07-01T15:38:13,406 adding 'glycopeptidepy-0.0.18.dist-info/RECORD' 2022-07-01T15:38:13,562 removing build/bdist.linux-armv7l/wheel 2022-07-01T15:38:14,002 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2022-07-01T15:38:14,262 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.18-cp39-cp39-linux_armv7l.whl size=5096360 sha256=56ac9753f278dd63a28ee8efc8564d11bfe2e40c75fa5cc86443f20e988ab084 2022-07-01T15:38:14,264 Stored in directory: /tmp/pip-ephem-wheel-cache-ugh9ugh_/wheels/6b/73/8d/0c7e5bd54da307d4c46e56f758f5596dbcd08d8ea966933190 2022-07-01T15:38:14,300 Successfully built glycopeptidepy 2022-07-01T15:38:14,640 Removed build tracker: '/tmp/pip-build-tracker-xivrp3je'