2022-07-04T16:39:34,131 Created temporary directory: /tmp/pip-ephem-wheel-cache-2nl344qa
2022-07-04T16:39:34,137 Created temporary directory: /tmp/pip-build-tracker-omvxd91q
2022-07-04T16:39:34,137 Initialized build tracking at /tmp/pip-build-tracker-omvxd91q
2022-07-04T16:39:34,138 Created build tracker: /tmp/pip-build-tracker-omvxd91q
2022-07-04T16:39:34,138 Entered build tracker: /tmp/pip-build-tracker-omvxd91q
2022-07-04T16:39:34,139 Created temporary directory: /tmp/pip-wheel-ne9em4lb
2022-07-04T16:39:34,211 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-04T16:39:34,219 2 location(s) to search for versions of polyply:
2022-07-04T16:39:34,219 * https://pypi.org/simple/polyply/
2022-07-04T16:39:34,219 * https://www.piwheels.org/simple/polyply/
2022-07-04T16:39:34,220 Fetching project page and analyzing links: https://pypi.org/simple/polyply/
2022-07-04T16:39:34,221 Getting page https://pypi.org/simple/polyply/
2022-07-04T16:39:34,225 Found index url https://pypi.org/simple
2022-07-04T16:39:34,442   Found link https://files.pythonhosted.org/packages/27/d1/df68703f3e73c235e05823b59a5271657847bcccdd392075b1b1da4aa701/polyply-0.0.1.tar.gz#sha256=4aebefec4a57040bf1ce245c622c917ae7510e0b37a8fa9b2381d11c3ddbc2ad (from https://pypi.org/simple/polyply/), version: 0.0.1
2022-07-04T16:39:34,443   Found link https://files.pythonhosted.org/packages/3f/35/d6ad36f78a4d71aac92d47e2831c4b3b339c6801c6dac6c3334a73a164c2/polyply-1.0.0.tar.gz#sha256=feb5c19d58ea34cc9816515e82680bfe4fa4d3e4808de5ef4629ebf47e005654 (from https://pypi.org/simple/polyply/), version: 1.0.0
2022-07-04T16:39:34,444   Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/61/c4/9393a7f82554a6c494f4c09776d48e4b83650cb2065930bcf63f0a04b3f2/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://pypi.org/simple/polyply/)
2022-07-04T16:39:34,445   Found link https://files.pythonhosted.org/packages/07/50/e2bedb4e92e97d38a55c48bb46ccdb71c31980679e7c62a756daf8ac0556/polyply-1.1.0.tar.gz#sha256=49ca6b1d872ce691f1dfb4f02de4cb656db9eec9b736b7099f4d9e37bbee7297 (from https://pypi.org/simple/polyply/), version: 1.1.0
2022-07-04T16:39:34,445   Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/b6/73/dae457005e36caeed515e0ddd6575f97b7b7ef0fa10ea58080b214f28bcb/polyply-1.2.0-py2.py3-none-any.whl#sha256=7c842ede1d5a88a8c1aa25ae2a30c6a67c7b4a15bfb965e104f7c7cf8ccdce31 (from https://pypi.org/simple/polyply/)
2022-07-04T16:39:34,446   Found link https://files.pythonhosted.org/packages/18/8e/2f4345b5870703a292c4a6935f371b133bf4296fb0c27277fc2b0e82b84a/polyply-1.2.0.tar.gz#sha256=d067e533b27f2379b36a238539a3b774de9cf6876c5de2706794c1749f42baff (from https://pypi.org/simple/polyply/), version: 1.2.0
2022-07-04T16:39:34,447   Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/30/09/9a2dd9e4a932367c34dab96daa3358f525caf79281b782cc999c5d23e739/polyply-1.2.1-py2.py3-none-any.whl#sha256=e900810bd542c4db6034af2fcb70a1ea1aa172274d6d6e89ed4f26c8496eca8f (from https://pypi.org/simple/polyply/)
2022-07-04T16:39:34,447   Found link https://files.pythonhosted.org/packages/44/2e/5a1f0589f61f2adf682da196f365578969be49e70bb5c462b804378574b8/polyply-1.2.1.tar.gz#sha256=039ed6a6f92e2f5695976b43699c0e8506bda1541ddd1fedc94d49a250331369 (from https://pypi.org/simple/polyply/), version: 1.2.1
2022-07-04T16:39:34,448   Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/8b/5a/54052dbde396df09dd9d81aeb3c5e1b3873d7a81e387f4c45cc3e9a9aaf7/polyply-1.3.0-py2.py3-none-any.whl#sha256=f72e0c5ca2cad71a3d2f83477d53e36e839f2f794fbb8513bfd16ce1c14227bb (from https://pypi.org/simple/polyply/)
2022-07-04T16:39:34,448   Found link https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz#sha256=f7019281f082c2a247a5a9313dfca03525923c0c06ec03da4b798638cf2af846 (from https://pypi.org/simple/polyply/), version: 1.3.0
2022-07-04T16:39:34,449   Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/5b/42/27a59dec4af56f87c3f93920f6021fb31bb9885d2bc7b3e0f9efe883db01/polyply-1.3.1-py2.py3-none-any.whl#sha256=cc0bf907d98db2d652c04805faef45ff62af522cafc1728b8e795ffb463a1b9e (from https://pypi.org/simple/polyply/)
2022-07-04T16:39:34,450   Found link https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz#sha256=16d82e58e71aac88668220beafe430d0b627709e5a8734af9136132cf4595786 (from https://pypi.org/simple/polyply/), version: 1.3.1
2022-07-04T16:39:34,450 Fetching project page and analyzing links: https://www.piwheels.org/simple/polyply/
2022-07-04T16:39:34,451 Getting page https://www.piwheels.org/simple/polyply/
2022-07-04T16:39:34,453 Found index url https://www.piwheels.org/simple
2022-07-04T16:39:34,671   Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.0-py2.py3-none-any.whl#sha256=6ba24bf0e5816a4bbca620557f3da0c72223845d343dc2aef98b62c4d82dd3bb (from https://www.piwheels.org/simple/polyply/)
2022-07-04T16:39:34,671   Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.1-py2.py3-none-any.whl#sha256=477478cf7f4d673782ed4e85fc97d32eaf0f5c1d5aa5af96d33ef496c1325007 (from https://www.piwheels.org/simple/polyply/)
2022-07-04T16:39:34,672   Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.0-py2.py3-none-any.whl#sha256=672ceb8c03418bf79a0c31ab912adb5e0767df776a7d5d867a516ea0652e6362 (from https://www.piwheels.org/simple/polyply/)
2022-07-04T16:39:34,672   Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://www.piwheels.org/simple/polyply/)
2022-07-04T16:39:34,673   Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.0.0-py2.py3-none-any.whl#sha256=e44f0272c9e93e8e46bed997db28dd0205d709cebd40090747e2758358abdb8c (from https://www.piwheels.org/simple/polyply/)
2022-07-04T16:39:34,673   Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-0.0.1-py2.py3-none-any.whl#sha256=165e22dfd4680f03fe8b6a49a8d3f38918049d263c57c0e82b5fddb4bc8b294b (from https://www.piwheels.org/simple/polyply/)
2022-07-04T16:39:34,674 Skipping link: not a file: https://www.piwheels.org/simple/polyply/
2022-07-04T16:39:34,674 Skipping link: not a file: https://pypi.org/simple/polyply/
2022-07-04T16:39:34,710 Given no hashes to check 1 links for project 'polyply': discarding no candidates
2022-07-04T16:39:34,741 Collecting polyply==1.3.1
2022-07-04T16:39:34,745   Created temporary directory: /tmp/pip-unpack-p1a8krrz
2022-07-04T16:39:35,317   Downloading polyply-1.3.1.tar.gz (519 kB)
2022-07-04T16:39:36,673   Added polyply==1.3.1 from https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz#sha256=16d82e58e71aac88668220beafe430d0b627709e5a8734af9136132cf4595786 to build tracker '/tmp/pip-build-tracker-omvxd91q'
2022-07-04T16:39:36,683   Created temporary directory: /tmp/pip-build-env-kd0u0af2
2022-07-04T16:39:36,697   Created temporary directory: /tmp/pip-standalone-pip-h9p9xc_q
2022-07-04T16:39:39,126   Installing build dependencies: started
2022-07-04T16:39:39,129   Running command pip subprocess to install build dependencies
2022-07-04T16:39:48,626   Using pip 22.1.2 from /tmp/pip-standalone-pip-h9p9xc_q/__env_pip__.zip/pip (python 3.7)
2022-07-04T16:39:49,959   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-04T16:39:50,812   Collecting wheel
2022-07-04T16:39:50,849     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-07-04T16:39:54,719   Collecting setuptools>=30.3.0
2022-07-04T16:39:54,970     Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.1.0-py3-none-any.whl (1.2 MB)
2022-07-04T16:39:55,702   Collecting pbr
2022-07-04T16:39:55,747     Using cached https://www.piwheels.org/simple/pbr/pbr-5.9.0-py2.py3-none-any.whl (106 kB)
2022-07-04T16:40:00,275   Installing collected packages: wheel, setuptools, pbr
2022-07-04T16:40:00,550     Creating /tmp/pip-build-env-kd0u0af2/overlay/bin
2022-07-04T16:40:00,555     changing mode of /tmp/pip-build-env-kd0u0af2/overlay/bin/wheel to 755
2022-07-04T16:40:06,235     changing mode of /tmp/pip-build-env-kd0u0af2/overlay/bin/pbr to 755
2022-07-04T16:40:06,269   Successfully installed pbr-5.9.0 setuptools-63.1.0 wheel-0.37.1
2022-07-04T16:40:06,905   Installing build dependencies: finished with status 'done'
2022-07-04T16:40:06,946   Getting requirements to build wheel: started
2022-07-04T16:40:06,948   Running command Getting requirements to build wheel
2022-07-04T16:40:09,089   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead
2022-07-04T16:40:09,091     % (opt, underscore_opt)
2022-07-04T16:40:09,091   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead
2022-07-04T16:40:09,091     % (opt, underscore_opt)
2022-07-04T16:40:09,092   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead
2022-07-04T16:40:09,092     % (opt, underscore_opt)
2022-07-04T16:40:09,093   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead
2022-07-04T16:40:09,093     % (opt, underscore_opt)
2022-07-04T16:40:09,294   Getting requirements to build wheel: finished with status 'done'
2022-07-04T16:40:09,322   Created temporary directory: /tmp/pip-modern-metadata-a17j39yp
2022-07-04T16:40:09,328   Preparing metadata (pyproject.toml): started
2022-07-04T16:40:09,330   Running command Preparing metadata (pyproject.toml)
2022-07-04T16:40:16,075   running dist_info
2022-07-04T16:40:16,084   creating /tmp/pip-modern-metadata-a17j39yp/polyply.egg-info
2022-07-04T16:40:16,700   writing /tmp/pip-modern-metadata-a17j39yp/polyply.egg-info/PKG-INFO
2022-07-04T16:40:17,284   writing dependency_links to /tmp/pip-modern-metadata-a17j39yp/polyply.egg-info/dependency_links.txt
2022-07-04T16:40:20,244   writing requirements to /tmp/pip-modern-metadata-a17j39yp/polyply.egg-info/requires.txt
2022-07-04T16:40:20,829   writing top-level names to /tmp/pip-modern-metadata-a17j39yp/polyply.egg-info/top_level.txt
2022-07-04T16:40:20,889   [pbr] Processing SOURCES.txt
2022-07-04T16:40:20,890   writing manifest file '/tmp/pip-modern-metadata-a17j39yp/polyply.egg-info/SOURCES.txt'
2022-07-04T16:40:21,862   /usr/local/lib/python3.7/dist-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
2022-07-04T16:40:21,863     EasyInstallDeprecationWarning,
2022-07-04T16:40:21,863   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-07-04T16:40:21,863     setuptools.SetuptoolsDeprecationWarning,
2022-07-04T16:40:21,864   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead
2022-07-04T16:40:21,864     % (opt, underscore_opt)
2022-07-04T16:40:21,865   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead
2022-07-04T16:40:21,865     % (opt, underscore_opt)
2022-07-04T16:40:21,865   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead
2022-07-04T16:40:21,866     % (opt, underscore_opt)
2022-07-04T16:40:21,866   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead
2022-07-04T16:40:21,866     % (opt, underscore_opt)
2022-07-04T16:40:21,867   warning: no previously-included files found matching '.gitignore'
2022-07-04T16:40:21,867   warning: no previously-included files found matching '.gitreview'
2022-07-04T16:40:21,867   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2022-07-04T16:40:21,982   adding license file 'LICENSE'
2022-07-04T16:40:21,983   adding license file 'AUTHORS'
2022-07-04T16:40:22,006   writing manifest file '/tmp/pip-modern-metadata-a17j39yp/polyply.egg-info/SOURCES.txt'
2022-07-04T16:40:22,011   creating '/tmp/pip-modern-metadata-a17j39yp/polyply-1.3.1.dist-info'
2022-07-04T16:40:22,195   The [wheel] section is deprecated. Use [bdist_wheel] instead.
2022-07-04T16:40:22,248   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-07-04T16:40:22,250   adding license file "AUTHORS" (matched pattern "AUTHORS*")
2022-07-04T16:40:22,515   Preparing metadata (pyproject.toml): finished with status 'done'
2022-07-04T16:40:22,531   Source in /tmp/pip-wheel-ne9em4lb/polyply_95c418729c8d4d949666eca13eb312c0 has version 1.3.1, which satisfies requirement polyply==1.3.1 from https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz#sha256=16d82e58e71aac88668220beafe430d0b627709e5a8734af9136132cf4595786
2022-07-04T16:40:22,533   Removed polyply==1.3.1 from https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz#sha256=16d82e58e71aac88668220beafe430d0b627709e5a8734af9136132cf4595786 from build tracker '/tmp/pip-build-tracker-omvxd91q'
2022-07-04T16:40:22,543 Created temporary directory: /tmp/pip-unpack-tf6kr6lr
2022-07-04T16:40:22,544 Building wheels for collected packages: polyply
2022-07-04T16:40:22,554   Created temporary directory: /tmp/pip-wheel-jp3gumpn
2022-07-04T16:40:22,554   Destination directory: /tmp/pip-wheel-jp3gumpn
2022-07-04T16:40:22,559   Building wheel for polyply (pyproject.toml): started
2022-07-04T16:40:22,561   Running command Building wheel for polyply (pyproject.toml)
2022-07-04T16:40:28,740   running bdist_wheel
2022-07-04T16:40:28,812   /usr/local/lib/python3.7/dist-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
2022-07-04T16:40:28,813     EasyInstallDeprecationWarning,
2022-07-04T16:40:28,813   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead
2022-07-04T16:40:28,814     % (opt, underscore_opt)
2022-07-04T16:40:28,814   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead
2022-07-04T16:40:28,815     % (opt, underscore_opt)
2022-07-04T16:40:28,815   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead
2022-07-04T16:40:28,815     % (opt, underscore_opt)
2022-07-04T16:40:28,816   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead
2022-07-04T16:40:28,816     % (opt, underscore_opt)
2022-07-04T16:40:28,816   The [wheel] section is deprecated. Use [bdist_wheel] instead.
2022-07-04T16:40:30,057   running build
2022-07-04T16:40:30,057   running build_py
2022-07-04T16:40:30,688   creating build
2022-07-04T16:40:30,689   creating build/lib
2022-07-04T16:40:30,690   creating build/lib/polyply
2022-07-04T16:40:30,691   creating build/lib/polyply/src
2022-07-04T16:40:30,693   copying polyply/src/logging.py -> build/lib/polyply/src
2022-07-04T16:40:30,697   copying polyply/src/graph_utils.py -> build/lib/polyply/src
2022-07-04T16:40:30,701   copying polyply/src/build_file_parser.py -> build/lib/polyply/src
2022-07-04T16:40:30,705   copying polyply/src/__init__.py -> build/lib/polyply/src
2022-07-04T16:40:30,708   copying polyply/src/minimizer.py -> build/lib/polyply/src
2022-07-04T16:40:30,712   copying polyply/src/gen_itp.py -> build/lib/polyply/src
2022-07-04T16:40:30,716   copying polyply/src/meta_molecule.py -> build/lib/polyply/src
2022-07-04T16:40:30,721   copying polyply/src/load_library.py -> build/lib/polyply/src
2022-07-04T16:40:30,725   copying polyply/src/linalg_functions.py -> build/lib/polyply/src
2022-07-04T16:40:30,730   copying polyply/src/top_parser.py -> build/lib/polyply/src
2022-07-04T16:40:30,735   copying polyply/src/apply_modifications.py -> build/lib/polyply/src
2022-07-04T16:40:30,739   copying polyply/src/gen_coords.py -> build/lib/polyply/src
2022-07-04T16:40:30,744   copying polyply/src/polyply_parser.py -> build/lib/polyply/src
2022-07-04T16:40:30,748   copying polyply/src/check_residue_equivalence.py -> build/lib/polyply/src
2022-07-04T16:40:30,752   copying polyply/src/apply_links.py -> build/lib/polyply/src
2022-07-04T16:40:30,758   copying polyply/src/ff_parser_sub.py -> build/lib/polyply/src
2022-07-04T16:40:30,761   copying polyply/src/gen_seq.py -> build/lib/polyply/src
2022-07-04T16:40:30,765   copying polyply/src/random_walk.py -> build/lib/polyply/src
2022-07-04T16:40:30,769   copying polyply/src/map_to_molecule.py -> build/lib/polyply/src
2022-07-04T16:40:30,774   copying polyply/src/processor.py -> build/lib/polyply/src
2022-07-04T16:40:30,777   copying polyply/src/generate_templates.py -> build/lib/polyply/src
2022-07-04T16:40:30,781   copying polyply/src/build_system.py -> build/lib/polyply/src
2022-07-04T16:40:30,785   copying polyply/src/virtual_site_builder.py -> build/lib/polyply/src
2022-07-04T16:40:30,789   copying polyply/src/persistence.py -> build/lib/polyply/src
2022-07-04T16:40:30,793   copying polyply/src/backmap.py -> build/lib/polyply/src
2022-07-04T16:40:30,797   copying polyply/src/nonbond_engine.py -> build/lib/polyply/src
2022-07-04T16:40:30,801   copying polyply/src/annotate_ligands.py -> build/lib/polyply/src
2022-07-04T16:40:30,806   copying polyply/src/topology.py -> build/lib/polyply/src
2022-07-04T16:40:30,810   copying polyply/src/restraints.py -> build/lib/polyply/src
2022-07-04T16:40:30,815   copying polyply/src/simple_seq_parsers.py -> build/lib/polyply/src
2022-07-04T16:40:30,821   creating build/lib/polyply/data
2022-07-04T16:40:30,823   copying polyply/data/__init__.py -> build/lib/polyply/data
2022-07-04T16:40:30,832   creating build/lib/polyply/tests
2022-07-04T16:40:30,834   copying polyply/tests/test_gen_seq.py -> build/lib/polyply/tests
2022-07-04T16:40:30,839   copying polyply/tests/test_load_library.py -> build/lib/polyply/tests
2022-07-04T16:40:30,843   copying polyply/tests/test_polyply_input.py -> build/lib/polyply/tests
2022-07-04T16:40:30,848   copying polyply/tests/test_logging.py -> build/lib/polyply/tests
2022-07-04T16:40:30,852   copying polyply/tests/test_persistence.py -> build/lib/polyply/tests
2022-07-04T16:40:30,857   copying polyply/tests/__init__.py -> build/lib/polyply/tests
2022-07-04T16:40:30,861   copying polyply/tests/test_top_parser.py -> build/lib/polyply/tests
2022-07-04T16:40:30,866   copying polyply/tests/example_fixtures.py -> build/lib/polyply/tests
2022-07-04T16:40:30,870   copying polyply/tests/test_linalg.py -> build/lib/polyply/tests
2022-07-04T16:40:30,875   copying polyply/tests/test_map_to_molecule.py -> build/lib/polyply/tests
2022-07-04T16:40:30,879   copying polyply/tests/test_generate_templates.py -> build/lib/polyply/tests
2022-07-04T16:40:30,884   copying polyply/tests/test_random_walk.py -> build/lib/polyply/tests
2022-07-04T16:40:30,889   copying polyply/tests/test_topology.py -> build/lib/polyply/tests
2022-07-04T16:40:30,895   copying polyply/tests/test_vs_builder.py -> build/lib/polyply/tests
2022-07-04T16:40:30,899   copying polyply/tests/test_apply_links.py -> build/lib/polyply/tests
2022-07-04T16:40:30,905   copying polyply/tests/test_simple_seq_parsers.py -> build/lib/polyply/tests
2022-07-04T16:40:30,909   copying polyply/tests/test_restraints.py -> build/lib/polyply/tests
2022-07-04T16:40:30,912   copying polyply/tests/test_ff_parser.py -> build/lib/polyply/tests
2022-07-04T16:40:30,915   copying polyply/tests/test_lib_files.py -> build/lib/polyply/tests
2022-07-04T16:40:30,920   copying polyply/tests/test_annotate_lingads.py -> build/lib/polyply/tests
2022-07-04T16:40:30,924   copying polyply/tests/test_residue_check.py -> build/lib/polyply/tests
2022-07-04T16:40:30,928   copying polyply/tests/test_build_system.py -> build/lib/polyply/tests
2022-07-04T16:40:30,932   copying polyply/tests/test_build_file_parser.py -> build/lib/polyply/tests
2022-07-04T16:40:30,935   copying polyply/tests/test_gen_coords.py -> build/lib/polyply/tests
2022-07-04T16:40:30,938   copying polyply/tests/test_gen_params.py -> build/lib/polyply/tests
2022-07-04T16:40:30,942   copying polyply/tests/test_meta_molecule.py -> build/lib/polyply/tests
2022-07-04T16:40:30,946   copying polyply/tests/test_optimize_geometry.py -> build/lib/polyply/tests
2022-07-04T16:40:30,951   copying polyply/tests/test_backmap.py -> build/lib/polyply/tests
2022-07-04T16:40:30,955   copying polyply/tests/test_itp_files.py -> build/lib/polyply/tests
2022-07-04T16:40:30,959   copying polyply/tests/test_graph_utils.py -> build/lib/polyply/tests
2022-07-04T16:40:30,962   copying polyply/tests/test_nb_engine.py -> build/lib/polyply/tests
2022-07-04T16:40:30,967   copying polyply/__init__.py -> build/lib/polyply
2022-07-04T16:40:30,969   running egg_info
2022-07-04T16:40:31,605   writing polyply.egg-info/PKG-INFO
2022-07-04T16:40:32,197   writing dependency_links to polyply.egg-info/dependency_links.txt
2022-07-04T16:40:35,150   writing requirements to polyply.egg-info/requires.txt
2022-07-04T16:40:35,744   writing top-level names to polyply.egg-info/top_level.txt
2022-07-04T16:40:35,810   [pbr] Reusing existing SOURCES.txt
2022-07-04T16:40:35,895   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,896       ############################
2022-07-04T16:40:35,897       # Package would be ignored #
2022-07-04T16:40:35,897       ############################
2022-07-04T16:40:35,897       Python recognizes 'polyply.data.gromos53A6' as an importable package, however it is
2022-07-04T16:40:35,898       included in the distribution as "data".
2022-07-04T16:40:35,898       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,898       therefore is considered deprecated).

2022-07-04T16:40:35,899       Please make sure that 'polyply.data.gromos53A6' is included as a package by using
2022-07-04T16:40:35,899       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,900       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,900       documentation page.


2022-07-04T16:40:35,901   !!

2022-07-04T16:40:35,901     check.warn(importable)
2022-07-04T16:40:35,902   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,903       ############################
2022-07-04T16:40:35,903       # Package would be ignored #
2022-07-04T16:40:35,903       ############################
2022-07-04T16:40:35,904       Python recognizes 'polyply.data.martini2' as an importable package, however it is
2022-07-04T16:40:35,904       included in the distribution as "data".
2022-07-04T16:40:35,904       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,905       therefore is considered deprecated).

2022-07-04T16:40:35,905       Please make sure that 'polyply.data.martini2' is included as a package by using
2022-07-04T16:40:35,905       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,906       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,906       documentation page.


2022-07-04T16:40:35,907   !!

2022-07-04T16:40:35,908     check.warn(importable)
2022-07-04T16:40:35,908   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,909       ############################
2022-07-04T16:40:35,909       # Package would be ignored #
2022-07-04T16:40:35,910       ############################
2022-07-04T16:40:35,910       Python recognizes 'polyply.data.martini3' as an importable package, however it is
2022-07-04T16:40:35,910       included in the distribution as "data".
2022-07-04T16:40:35,910       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,911       therefore is considered deprecated).

2022-07-04T16:40:35,911       Please make sure that 'polyply.data.martini3' is included as a package by using
2022-07-04T16:40:35,912       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,912       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,912       documentation page.


2022-07-04T16:40:35,913   !!

2022-07-04T16:40:35,914     check.warn(importable)
2022-07-04T16:40:35,915   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,915       ############################
2022-07-04T16:40:35,916       # Package would be ignored #
2022-07-04T16:40:35,916       ############################
2022-07-04T16:40:35,916       Python recognizes 'polyply.data.martini3_beta' as an importable package, however it is
2022-07-04T16:40:35,917       included in the distribution as "data".
2022-07-04T16:40:35,917       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,917       therefore is considered deprecated).

2022-07-04T16:40:35,918       Please make sure that 'polyply.data.martini3_beta' is included as a package by using
2022-07-04T16:40:35,918       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,919       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,919       documentation page.


2022-07-04T16:40:35,920   !!

2022-07-04T16:40:35,920     check.warn(importable)
2022-07-04T16:40:35,921   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,922       ############################
2022-07-04T16:40:35,922       # Package would be ignored #
2022-07-04T16:40:35,922       ############################
2022-07-04T16:40:35,923       Python recognizes 'polyply.data.oplsaaLigParGen' as an importable package, however it is
2022-07-04T16:40:35,923       included in the distribution as "data".
2022-07-04T16:40:35,923       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,923       therefore is considered deprecated).

2022-07-04T16:40:35,924       Please make sure that 'polyply.data.oplsaaLigParGen' is included as a package by using
2022-07-04T16:40:35,924       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,925       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,925       documentation page.


2022-07-04T16:40:35,926   !!

2022-07-04T16:40:35,927     check.warn(importable)
2022-07-04T16:40:35,927   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,928       ############################
2022-07-04T16:40:35,928       # Package would be ignored #
2022-07-04T16:40:35,929       ############################
2022-07-04T16:40:35,929       Python recognizes 'polyply.data.parmbsc1' as an importable package, however it is
2022-07-04T16:40:35,929       included in the distribution as "data".
2022-07-04T16:40:35,929       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,930       therefore is considered deprecated).

2022-07-04T16:40:35,930       Please make sure that 'polyply.data.parmbsc1' is included as a package by using
2022-07-04T16:40:35,931       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,931       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,931       documentation page.


2022-07-04T16:40:35,932   !!

2022-07-04T16:40:35,933     check.warn(importable)
2022-07-04T16:40:35,933   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,934       ############################
2022-07-04T16:40:35,934       # Package would be ignored #
2022-07-04T16:40:35,935       ############################
2022-07-04T16:40:35,935       Python recognizes 'polyply.tests.test_data.ff' as an importable package, however it is
2022-07-04T16:40:35,935       included in the distribution as "data".
2022-07-04T16:40:35,936       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,936       therefore is considered deprecated).

2022-07-04T16:40:35,937       Please make sure that 'polyply.tests.test_data.ff' is included as a package by using
2022-07-04T16:40:35,937       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,937       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,938       documentation page.


2022-07-04T16:40:35,939   !!

2022-07-04T16:40:35,939     check.warn(importable)
2022-07-04T16:40:35,939   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,940       ############################
2022-07-04T16:40:35,941       # Package would be ignored #
2022-07-04T16:40:35,941       ############################
2022-07-04T16:40:35,941       Python recognizes 'polyply.tests.test_data.gen_params.input' as an importable package, however it is
2022-07-04T16:40:35,941       included in the distribution as "data".
2022-07-04T16:40:35,942       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,942       therefore is considered deprecated).

2022-07-04T16:40:35,943       Please make sure that 'polyply.tests.test_data.gen_params.input' is included as a package by using
2022-07-04T16:40:35,943       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,944       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,944       documentation page.


2022-07-04T16:40:35,945   !!

2022-07-04T16:40:35,945     check.warn(importable)
2022-07-04T16:40:35,946   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,947       ############################
2022-07-04T16:40:35,947       # Package would be ignored #
2022-07-04T16:40:35,947       ############################
2022-07-04T16:40:35,947       Python recognizes 'polyply.tests.test_data.gen_params.output' as an importable package, however it is
2022-07-04T16:40:35,948       included in the distribution as "data".
2022-07-04T16:40:35,948       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,948       therefore is considered deprecated).

2022-07-04T16:40:35,949       Please make sure that 'polyply.tests.test_data.gen_params.output' is included as a package by using
2022-07-04T16:40:35,949       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,950       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,950       documentation page.


2022-07-04T16:40:35,951   !!

2022-07-04T16:40:35,952     check.warn(importable)
2022-07-04T16:40:35,952   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,953       ############################
2022-07-04T16:40:35,953       # Package would be ignored #
2022-07-04T16:40:35,953       ############################
2022-07-04T16:40:35,954       Python recognizes 'polyply.tests.test_data.gen_params.ref' as an importable package, however it is
2022-07-04T16:40:35,954       included in the distribution as "data".
2022-07-04T16:40:35,954       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,955       therefore is considered deprecated).

2022-07-04T16:40:35,955       Please make sure that 'polyply.tests.test_data.gen_params.ref' is included as a package by using
2022-07-04T16:40:35,955       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,956       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,956       documentation page.


2022-07-04T16:40:35,957   !!

2022-07-04T16:40:35,958     check.warn(importable)
2022-07-04T16:40:35,958   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,959       ############################
2022-07-04T16:40:35,959       # Package would be ignored #
2022-07-04T16:40:35,959       ############################
2022-07-04T16:40:35,960       Python recognizes 'polyply.tests.test_data.gen_seq.input' as an importable package, however it is
2022-07-04T16:40:35,960       included in the distribution as "data".
2022-07-04T16:40:35,960       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,961       therefore is considered deprecated).

2022-07-04T16:40:35,961       Please make sure that 'polyply.tests.test_data.gen_seq.input' is included as a package by using
2022-07-04T16:40:35,962       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,962       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,963       documentation page.


2022-07-04T16:40:35,963   !!

2022-07-04T16:40:35,964     check.warn(importable)
2022-07-04T16:40:35,964   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,965       ############################
2022-07-04T16:40:35,966       # Package would be ignored #
2022-07-04T16:40:35,966       ############################
2022-07-04T16:40:35,966       Python recognizes 'polyply.tests.test_data.gen_seq.output' as an importable package, however it is
2022-07-04T16:40:35,966       included in the distribution as "data".
2022-07-04T16:40:35,967       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,967       therefore is considered deprecated).

2022-07-04T16:40:35,968       Please make sure that 'polyply.tests.test_data.gen_seq.output' is included as a package by using
2022-07-04T16:40:35,968       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,968       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,969       documentation page.


2022-07-04T16:40:35,970   !!

2022-07-04T16:40:35,970     check.warn(importable)
2022-07-04T16:40:35,971   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,971       ############################
2022-07-04T16:40:35,972       # Package would be ignored #
2022-07-04T16:40:35,972       ############################
2022-07-04T16:40:35,972       Python recognizes 'polyply.tests.test_data.gen_seq.ref' as an importable package, however it is
2022-07-04T16:40:35,973       included in the distribution as "data".
2022-07-04T16:40:35,973       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,973       therefore is considered deprecated).

2022-07-04T16:40:35,974       Please make sure that 'polyply.tests.test_data.gen_seq.ref' is included as a package by using
2022-07-04T16:40:35,974       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,975       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,975       documentation page.


2022-07-04T16:40:35,976   !!

2022-07-04T16:40:35,976     check.warn(importable)
2022-07-04T16:40:35,977   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,978       ############################
2022-07-04T16:40:35,978       # Package would be ignored #
2022-07-04T16:40:35,978       ############################
2022-07-04T16:40:35,978       Python recognizes 'polyply.tests.test_data.itp' as an importable package, however it is
2022-07-04T16:40:35,979       included in the distribution as "data".
2022-07-04T16:40:35,979       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,979       therefore is considered deprecated).

2022-07-04T16:40:35,980       Please make sure that 'polyply.tests.test_data.itp' is included as a package by using
2022-07-04T16:40:35,980       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,981       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,981       documentation page.


2022-07-04T16:40:35,982   !!

2022-07-04T16:40:35,982     check.warn(importable)
2022-07-04T16:40:35,983   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,984       ############################
2022-07-04T16:40:35,984       # Package would be ignored #
2022-07-04T16:40:35,984       ############################
2022-07-04T16:40:35,985       Python recognizes 'polyply.tests.test_data.json' as an importable package, however it is
2022-07-04T16:40:35,985       included in the distribution as "data".
2022-07-04T16:40:35,985       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,985       therefore is considered deprecated).

2022-07-04T16:40:35,986       Please make sure that 'polyply.tests.test_data.json' is included as a package by using
2022-07-04T16:40:35,986       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,987       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,987       documentation page.


2022-07-04T16:40:35,988   !!

2022-07-04T16:40:35,989     check.warn(importable)
2022-07-04T16:40:35,989   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,990       ############################
2022-07-04T16:40:35,990       # Package would be ignored #
2022-07-04T16:40:35,990       ############################
2022-07-04T16:40:35,991       Python recognizes 'polyply.tests.test_data.library_tests' as an importable package, however it is
2022-07-04T16:40:35,991       included in the distribution as "data".
2022-07-04T16:40:35,991       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,992       therefore is considered deprecated).

2022-07-04T16:40:35,992       Please make sure that 'polyply.tests.test_data.library_tests' is included as a package by using
2022-07-04T16:40:35,992       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,993       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,993       documentation page.


2022-07-04T16:40:35,994   !!

2022-07-04T16:40:35,995     check.warn(importable)
2022-07-04T16:40:35,995   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:35,996       ############################
2022-07-04T16:40:35,996       # Package would be ignored #
2022-07-04T16:40:35,996       ############################
2022-07-04T16:40:35,997       Python recognizes 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' as an importable package, however it is
2022-07-04T16:40:35,997       included in the distribution as "data".
2022-07-04T16:40:35,997       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:35,998       therefore is considered deprecated).

2022-07-04T16:40:35,998       Please make sure that 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' is included as a package by using
2022-07-04T16:40:35,999       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:35,999       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:35,999       documentation page.


2022-07-04T16:40:36,000   !!

2022-07-04T16:40:36,001     check.warn(importable)
2022-07-04T16:40:36,001   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,002       ############################
2022-07-04T16:40:36,002       # Package would be ignored #
2022-07-04T16:40:36,003       ############################
2022-07-04T16:40:36,003       Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL' as an importable package, however it is
2022-07-04T16:40:36,003       included in the distribution as "data".
2022-07-04T16:40:36,003       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,004       therefore is considered deprecated).

2022-07-04T16:40:36,004       Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL' is included as a package by using
2022-07-04T16:40:36,005       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,005       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,005       documentation page.


2022-07-04T16:40:36,006   !!

2022-07-04T16:40:36,007     check.warn(importable)
2022-07-04T16:40:36,007   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,008       ############################
2022-07-04T16:40:36,008       # Package would be ignored #
2022-07-04T16:40:36,009       ############################
2022-07-04T16:40:36,009       Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' as an importable package, however it is
2022-07-04T16:40:36,009       included in the distribution as "data".
2022-07-04T16:40:36,010       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,010       therefore is considered deprecated).

2022-07-04T16:40:36,010       Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' is included as a package by using
2022-07-04T16:40:36,011       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,011       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,012       documentation page.


2022-07-04T16:40:36,012   !!

2022-07-04T16:40:36,013     check.warn(importable)
2022-07-04T16:40:36,013   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,014       ############################
2022-07-04T16:40:36,015       # Package would be ignored #
2022-07-04T16:40:36,015       ############################
2022-07-04T16:40:36,015       Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' as an importable package, however it is
2022-07-04T16:40:36,015       included in the distribution as "data".
2022-07-04T16:40:36,016       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,016       therefore is considered deprecated).

2022-07-04T16:40:36,017       Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' is included as a package by using
2022-07-04T16:40:36,017       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,017       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,018       documentation page.


2022-07-04T16:40:36,019   !!

2022-07-04T16:40:36,019     check.warn(importable)
2022-07-04T16:40:36,019   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,020       ############################
2022-07-04T16:40:36,021       # Package would be ignored #
2022-07-04T16:40:36,021       ############################
2022-07-04T16:40:36,021       Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE' as an importable package, however it is
2022-07-04T16:40:36,021       included in the distribution as "data".
2022-07-04T16:40:36,022       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,022       therefore is considered deprecated).

2022-07-04T16:40:36,023       Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE' is included as a package by using
2022-07-04T16:40:36,023       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,024       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,024       documentation page.


2022-07-04T16:40:36,025   !!

2022-07-04T16:40:36,026     check.warn(importable)
2022-07-04T16:40:36,026   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,027       ############################
2022-07-04T16:40:36,027       # Package would be ignored #
2022-07-04T16:40:36,027       ############################
2022-07-04T16:40:36,028       Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' as an importable package, however it is
2022-07-04T16:40:36,028       included in the distribution as "data".
2022-07-04T16:40:36,028       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,028       therefore is considered deprecated).

2022-07-04T16:40:36,029       Please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' is included as a package by using
2022-07-04T16:40:36,029       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,030       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,030       documentation page.


2022-07-04T16:40:36,031   !!

2022-07-04T16:40:36,032     check.warn(importable)
2022-07-04T16:40:36,032   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,033       ############################
2022-07-04T16:40:36,033       # Package would be ignored #
2022-07-04T16:40:36,033       ############################
2022-07-04T16:40:36,034       Python recognizes 'polyply.tests.test_data.library_tests.martini2.PS.polyply' as an importable package, however it is
2022-07-04T16:40:36,034       included in the distribution as "data".
2022-07-04T16:40:36,034       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,035       therefore is considered deprecated).

2022-07-04T16:40:36,035       Please make sure that 'polyply.tests.test_data.library_tests.martini2.PS.polyply' is included as a package by using
2022-07-04T16:40:36,035       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,036       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,036       documentation page.


2022-07-04T16:40:36,037   !!

2022-07-04T16:40:36,038     check.warn(importable)
2022-07-04T16:40:36,038   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,039       ############################
2022-07-04T16:40:36,039       # Package would be ignored #
2022-07-04T16:40:36,040       ############################
2022-07-04T16:40:36,040       Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA' as an importable package, however it is
2022-07-04T16:40:36,040       included in the distribution as "data".
2022-07-04T16:40:36,040       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,041       therefore is considered deprecated).

2022-07-04T16:40:36,041       Please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA' is included as a package by using
2022-07-04T16:40:36,042       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,042       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,043       documentation page.


2022-07-04T16:40:36,043   !!

2022-07-04T16:40:36,044     check.warn(importable)
2022-07-04T16:40:36,044   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,045       ############################
2022-07-04T16:40:36,046       # Package would be ignored #
2022-07-04T16:40:36,046       ############################
2022-07-04T16:40:36,046       Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' as an importable package, however it is
2022-07-04T16:40:36,046       included in the distribution as "data".
2022-07-04T16:40:36,047       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,047       therefore is considered deprecated).

2022-07-04T16:40:36,048       Please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' is included as a package by using
2022-07-04T16:40:36,048       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,049       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,049       documentation page.


2022-07-04T16:40:36,050   !!

2022-07-04T16:40:36,050     check.warn(importable)
2022-07-04T16:40:36,051   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,051       ############################
2022-07-04T16:40:36,052       # Package would be ignored #
2022-07-04T16:40:36,052       ############################
2022-07-04T16:40:36,052       Python recognizes 'polyply.tests.test_data.library_tests.martini3.DEX' as an importable package, however it is
2022-07-04T16:40:36,053       included in the distribution as "data".
2022-07-04T16:40:36,053       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,053       therefore is considered deprecated).

2022-07-04T16:40:36,054       Please make sure that 'polyply.tests.test_data.library_tests.martini3.DEX' is included as a package by using
2022-07-04T16:40:36,054       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,055       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,055       documentation page.


2022-07-04T16:40:36,056   !!

2022-07-04T16:40:36,056     check.warn(importable)
2022-07-04T16:40:36,057   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,057       ############################
2022-07-04T16:40:36,058       # Package would be ignored #
2022-07-04T16:40:36,058       ############################
2022-07-04T16:40:36,058       Python recognizes 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' as an importable package, however it is
2022-07-04T16:40:36,059       included in the distribution as "data".
2022-07-04T16:40:36,059       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,059       therefore is considered deprecated).

2022-07-04T16:40:36,060       Please make sure that 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' is included as a package by using
2022-07-04T16:40:36,060       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,061       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,061       documentation page.


2022-07-04T16:40:36,062   !!

2022-07-04T16:40:36,062     check.warn(importable)
2022-07-04T16:40:36,063   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,063       ############################
2022-07-04T16:40:36,064       # Package would be ignored #
2022-07-04T16:40:36,064       ############################
2022-07-04T16:40:36,064       Python recognizes 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' as an importable package, however it is
2022-07-04T16:40:36,065       included in the distribution as "data".
2022-07-04T16:40:36,065       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,065       therefore is considered deprecated).

2022-07-04T16:40:36,066       Please make sure that 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' is included as a package by using
2022-07-04T16:40:36,066       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,067       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,067       documentation page.


2022-07-04T16:40:36,068   !!

2022-07-04T16:40:36,068     check.warn(importable)
2022-07-04T16:40:36,069   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,069       ############################
2022-07-04T16:40:36,070       # Package would be ignored #
2022-07-04T16:40:36,070       ############################
2022-07-04T16:40:36,070       Python recognizes 'polyply.tests.test_data.library_tests.martini3.PE.polyply' as an importable package, however it is
2022-07-04T16:40:36,071       included in the distribution as "data".
2022-07-04T16:40:36,071       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,071       therefore is considered deprecated).

2022-07-04T16:40:36,072       Please make sure that 'polyply.tests.test_data.library_tests.martini3.PE.polyply' is included as a package by using
2022-07-04T16:40:36,072       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,073       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,073       documentation page.


2022-07-04T16:40:36,074   !!

2022-07-04T16:40:36,074     check.warn(importable)
2022-07-04T16:40:36,075   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,076       ############################
2022-07-04T16:40:36,076       # Package would be ignored #
2022-07-04T16:40:36,076       ############################
2022-07-04T16:40:36,077       Python recognizes 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' as an importable package, however it is
2022-07-04T16:40:36,077       included in the distribution as "data".
2022-07-04T16:40:36,077       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,078       therefore is considered deprecated).

2022-07-04T16:40:36,078       Please make sure that 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' is included as a package by using
2022-07-04T16:40:36,078       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,079       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,079       documentation page.


2022-07-04T16:40:36,081   !!

2022-07-04T16:40:36,081     check.warn(importable)
2022-07-04T16:40:36,082   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,083       ############################
2022-07-04T16:40:36,083       # Package would be ignored #
2022-07-04T16:40:36,083       ############################
2022-07-04T16:40:36,084       Python recognizes 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' as an importable package, however it is
2022-07-04T16:40:36,084       included in the distribution as "data".
2022-07-04T16:40:36,085       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,085       therefore is considered deprecated).

2022-07-04T16:40:36,086       Please make sure that 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' is included as a package by using
2022-07-04T16:40:36,086       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,087       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,087       documentation page.


2022-07-04T16:40:36,088   !!

2022-07-04T16:40:36,089     check.warn(importable)
2022-07-04T16:40:36,089   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:36,091       ############################
2022-07-04T16:40:36,091       # Package would be ignored #
2022-07-04T16:40:36,091       ############################
2022-07-04T16:40:36,092       Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT' as an importable package, however it is
2022-07-04T16:40:36,092       included in the distribution as "data".
2022-07-04T16:40:36,092       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:36,093       therefore is considered deprecated).

2022-07-04T16:40:36,093       Please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT' is included as a package by using
2022-07-04T16:40:36,094       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:36,094       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:36,095       documentation page.


2022-07-04T16:40:36,095   !!

2022-07-04T16:40:36,096     check.warn(importable)
2022-07-04T16:40:36,096   creating build/lib/polyply/data/2016H66
2022-07-04T16:40:36,097   copying polyply/data/2016H66/chiral_links.ff -> build/lib/polyply/data/2016H66
2022-07-04T16:40:36,097   copying polyply/data/2016H66/citation.bib -> build/lib/polyply/data/2016H66
2022-07-04T16:40:36,097   copying polyply/data/2016H66/polyether_blocks.ff -> build/lib/polyply/data/2016H66
2022-07-04T16:40:36,097   copying polyply/data/2016H66/polyether_links.ff -> build/lib/polyply/data/2016H66
2022-07-04T16:40:36,110   copying polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/lib/polyply/data/2016H66
2022-07-04T16:40:36,115   copying polyply/data/2016H66/polyvinyl_blocks.ff -> build/lib/polyply/data/2016H66
2022-07-04T16:40:36,120   copying polyply/data/2016H66/polyvinyl_links.ff -> build/lib/polyply/data/2016H66
2022-07-04T16:40:36,125   copying polyply/data/2016H66/terminal_blocks.ff -> build/lib/polyply/data/2016H66
2022-07-04T16:40:36,129   creating build/lib/polyply/data/gromos53A6
2022-07-04T16:40:36,131   copying polyply/data/gromos53A6/Hter.ff -> build/lib/polyply/data/gromos53A6
2022-07-04T16:40:36,135   copying polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/lib/polyply/data/gromos53A6
2022-07-04T16:40:36,140   copying polyply/data/gromos53A6/citations.bib -> build/lib/polyply/data/gromos53A6
2022-07-04T16:40:36,144   copying polyply/data/gromos53A6/links.ff -> build/lib/polyply/data/gromos53A6
2022-07-04T16:40:36,148   creating build/lib/polyply/data/martini2
2022-07-04T16:40:36,150   copying polyply/data/martini2/DNA_M2.ff -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,155   copying polyply/data/martini2/P3HT.martini.2.itp -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,158   copying polyply/data/martini2/PDADMA.martini.2.itp -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,162   copying polyply/data/martini2/PE.martini.2.itp -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,166   copying polyply/data/martini2/PEO.martini.2.itp -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,170   copying polyply/data/martini2/PP.martini.2.itp -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,173   copying polyply/data/martini2/PS.martini.2.itp -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,177   copying polyply/data/martini2/PSS.martini.2.itp -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,181   copying polyply/data/martini2/citations.bib -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,185   copying polyply/data/martini2/links.ff -> build/lib/polyply/data/martini2
2022-07-04T16:40:36,188   creating build/lib/polyply/data/martini3
2022-07-04T16:40:36,190   copying polyply/data/martini3/P3HT.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,194   copying polyply/data/martini3/PE.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,198   copying polyply/data/martini3/PEL_link.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,201   copying polyply/data/martini3/PEO.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,205   copying polyply/data/martini3/PMA.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,209   copying polyply/data/martini3/PMMA.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,212   copying polyply/data/martini3/PPE.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,217   copying polyply/data/martini3/PS.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,221   copying polyply/data/martini3/PSS.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,225   copying polyply/data/martini3/PS_PEO_link.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,228   copying polyply/data/martini3/PVA.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,232   copying polyply/data/martini3/aminoacids.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,237   copying polyply/data/martini3/citations.bib -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,241   copying polyply/data/martini3/dextran.martini3.ff -> build/lib/polyply/data/martini3
2022-07-04T16:40:36,244   creating build/lib/polyply/data/martini3_beta
2022-07-04T16:40:36,246   copying polyply/data/martini3_beta/PEO.martini.3.itp -> build/lib/polyply/data/martini3_beta
2022-07-04T16:40:36,250   copying polyply/data/martini3_beta/citations.bib -> build/lib/polyply/data/martini3_beta
2022-07-04T16:40:36,253   creating build/lib/polyply/data/oplsaaLigParGen
2022-07-04T16:40:36,255   copying polyply/data/oplsaaLigParGen/OHter.ff -> build/lib/polyply/data/oplsaaLigParGen
2022-07-04T16:40:36,258   copying polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen
2022-07-04T16:40:36,262   copying polyply/data/oplsaaLigParGen/citations.bib -> build/lib/polyply/data/oplsaaLigParGen
2022-07-04T16:40:36,266   copying polyply/data/oplsaaLigParGen/links.ff -> build/lib/polyply/data/oplsaaLigParGen
2022-07-04T16:40:36,270   creating build/lib/polyply/data/parmbsc1
2022-07-04T16:40:36,272   copying polyply/data/parmbsc1/citations.bib -> build/lib/polyply/data/parmbsc1
2022-07-04T16:40:36,276   copying polyply/data/parmbsc1/dna_final.ff -> build/lib/polyply/data/parmbsc1
2022-07-04T16:40:36,283   copying polyply/tests/.coverage -> build/lib/polyply/tests
2022-07-04T16:40:36,290   creating build/lib/polyply/tests/test_data
2022-07-04T16:40:36,290   creating build/lib/polyply/tests/test_data/ff
2022-07-04T16:40:36,292   copying polyply/tests/test_data/ff/aminoacids.ff -> build/lib/polyply/tests/test_data/ff
2022-07-04T16:40:36,298   creating build/lib/polyply/tests/test_data/gen_params
2022-07-04T16:40:36,298   creating build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,300   copying polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,304   copying polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,308   copying polyply/tests/test_data/gen_params/input/PPI.ff -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,312   copying polyply/tests/test_data/gen_params/input/PPI.json -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,316   copying polyply/tests/test_data/gen_params/input/PS.json -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,320   copying polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,324   copying polyply/tests/test_data/gen_params/input/test.ff -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,328   copying polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,332   copying polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/lib/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:36,336   creating build/lib/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:36,338   copying polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/lib/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:36,342   copying polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/lib/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:36,347   copying polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/lib/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:36,350   copying polyply/tests/test_data/gen_params/output/PS_out.itp -> build/lib/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:36,357   copying polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/lib/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:36,361   copying polyply/tests/test_data/gen_params/output/test_out.itp -> build/lib/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:36,365   creating build/lib/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:36,366   copying polyply/tests/test_data/gen_params/ref/G3.itp -> build/lib/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:36,370   copying polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:36,375   copying polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:36,379   copying polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:36,383   copying polyply/tests/test_data/gen_params/ref/end.itp -> build/lib/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:36,387   copying polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/lib/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:36,391   copying polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/lib/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:36,395   creating build/lib/polyply/tests/test_data/gen_seq
2022-07-04T16:40:36,395   creating build/lib/polyply/tests/test_data/gen_seq/input
2022-07-04T16:40:36,397   copying polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/lib/polyply/tests/test_data/gen_seq/input
2022-07-04T16:40:36,404   creating build/lib/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:36,405   copying polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/lib/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:36,409   copying polyply/tests/test_data/gen_seq/output/PPI.json -> build/lib/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:36,413   copying polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/lib/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:36,422   copying polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:36,431   copying polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/lib/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:36,435   creating build/lib/polyply/tests/test_data/gen_seq/ref
2022-07-04T16:40:36,436   copying polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref
2022-07-04T16:40:36,441   copying polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref
2022-07-04T16:40:36,445   copying polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/ref
2022-07-04T16:40:36,452   creating build/lib/polyply/tests/test_data/itp
2022-07-04T16:40:36,454   copying polyply/tests/test_data/itp/PEO.itp -> build/lib/polyply/tests/test_data/itp
2022-07-04T16:40:36,458   creating build/lib/polyply/tests/test_data/json
2022-07-04T16:40:36,459   copying polyply/tests/test_data/json/double_branch.json -> build/lib/polyply/tests/test_data/json
2022-07-04T16:40:36,463   copying polyply/tests/test_data/json/fail.json -> build/lib/polyply/tests/test_data/json
2022-07-04T16:40:36,467   copying polyply/tests/test_data/json/hyperbranched.json -> build/lib/polyply/tests/test_data/json
2022-07-04T16:40:36,471   copying polyply/tests/test_data/json/linear.json -> build/lib/polyply/tests/test_data/json
2022-07-04T16:40:36,475   copying polyply/tests/test_data/json/linear_rev.json -> build/lib/polyply/tests/test_data/json
2022-07-04T16:40:36,479   copying polyply/tests/test_data/json/single_branch.json -> build/lib/polyply/tests/test_data/json
2022-07-04T16:40:36,482   creating build/lib/polyply/tests/test_data/library_tests
2022-07-04T16:40:36,483   creating build/lib/polyply/tests/test_data/library_tests/2016H66
2022-07-04T16:40:36,484   creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4
2022-07-04T16:40:36,485   creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply
2022-07-04T16:40:36,487   copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply
2022-07-04T16:40:36,492   copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply
2022-07-04T16:40:36,496   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE
2022-07-04T16:40:36,498   copying polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE
2022-07-04T16:40:36,502   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply
2022-07-04T16:40:36,503   copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply
2022-07-04T16:40:36,507   copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply
2022-07-04T16:40:36,511   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA
2022-07-04T16:40:36,512   copying polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA
2022-07-04T16:40:36,516   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply
2022-07-04T16:40:36,518   copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply
2022-07-04T16:40:36,523   copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply
2022-07-04T16:40:36,527   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP
2022-07-04T16:40:36,528   copying polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP
2022-07-04T16:40:36,532   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply
2022-07-04T16:40:36,533   copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply
2022-07-04T16:40:36,537   copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply
2022-07-04T16:40:36,541   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS
2022-07-04T16:40:36,542   copying polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS
2022-07-04T16:40:36,547   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply
2022-07-04T16:40:36,549   copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply
2022-07-04T16:40:36,554   copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply
2022-07-04T16:40:36,557   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA
2022-07-04T16:40:36,559   copying polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA
2022-07-04T16:40:36,563   creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply
2022-07-04T16:40:36,564   copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply
2022-07-04T16:40:36,568   copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply
2022-07-04T16:40:36,572   creating build/lib/polyply/tests/test_data/library_tests/gromos53A6
2022-07-04T16:40:36,573   creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT
2022-07-04T16:40:36,574   creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply
2022-07-04T16:40:36,576   copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply
2022-07-04T16:40:36,582   copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply
2022-07-04T16:40:36,586   creating build/lib/polyply/tests/test_data/library_tests/martini2
2022-07-04T16:40:36,586   creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL
2022-07-04T16:40:36,588   copying polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL
2022-07-04T16:40:36,592   creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply
2022-07-04T16:40:36,593   copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply
2022-07-04T16:40:36,599   copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply
2022-07-04T16:40:36,603   creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO
2022-07-04T16:40:36,603   creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply
2022-07-04T16:40:36,605   copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply
2022-07-04T16:40:36,610   copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply
2022-07-04T16:40:36,614   creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE
2022-07-04T16:40:36,615   copying polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE
2022-07-04T16:40:36,619   creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply
2022-07-04T16:40:36,621   copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply
2022-07-04T16:40:36,625   copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply
2022-07-04T16:40:36,629   creating build/lib/polyply/tests/test_data/library_tests/martini2/PS
2022-07-04T16:40:36,629   creating build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply
2022-07-04T16:40:36,631   copying polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply
2022-07-04T16:40:36,636   copying polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply
2022-07-04T16:40:36,639   creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA
2022-07-04T16:40:36,641   copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA
2022-07-04T16:40:36,656   copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA
2022-07-04T16:40:36,660   creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply
2022-07-04T16:40:36,662   copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply
2022-07-04T16:40:36,666   copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply
2022-07-04T16:40:36,690   creating build/lib/polyply/tests/test_data/library_tests/martini3
2022-07-04T16:40:36,691   creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX
2022-07-04T16:40:36,693   copying polyply/tests/test_data/library_tests/martini3/DEX/input.json -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX
2022-07-04T16:40:36,698   creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply
2022-07-04T16:40:36,699   copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply
2022-07-04T16:40:36,704   copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply
2022-07-04T16:40:36,708   creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT
2022-07-04T16:40:36,709   creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply
2022-07-04T16:40:36,711   copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply
2022-07-04T16:40:36,715   copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply
2022-07-04T16:40:36,719   creating build/lib/polyply/tests/test_data/library_tests/martini3/PE
2022-07-04T16:40:36,719   creating build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply
2022-07-04T16:40:36,721   copying polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply
2022-07-04T16:40:36,726   copying polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply
2022-07-04T16:40:36,729   creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO
2022-07-04T16:40:36,730   creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply
2022-07-04T16:40:36,732   copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply
2022-07-04T16:40:36,736   copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply
2022-07-04T16:40:36,740   creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE
2022-07-04T16:40:36,740   creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply
2022-07-04T16:40:36,742   copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply
2022-07-04T16:40:36,748   copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply
2022-07-04T16:40:36,751   creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT
2022-07-04T16:40:36,753   copying polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT
2022-07-04T16:40:36,758   copying polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT
2022-07-04T16:40:36,763   creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply
2022-07-04T16:40:36,764   copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply
2022-07-04T16:40:36,770   copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply
2022-07-04T16:40:36,774   creating build/lib/polyply/tests/test_data/library_tests/martini3/PS
2022-07-04T16:40:36,774   creating build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply
2022-07-04T16:40:36,776   copying polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply
2022-07-04T16:40:36,780   copying polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply
2022-07-04T16:40:36,784   creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen
2022-07-04T16:40:36,785   creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO
2022-07-04T16:40:36,786   creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply
2022-07-04T16:40:36,788   copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply
2022-07-04T16:40:36,793   copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply
2022-07-04T16:40:36,797   creating build/lib/polyply/tests/test_data/library_tests/parmbsc1
2022-07-04T16:40:36,798   creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA
2022-07-04T16:40:36,800   copying polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA
2022-07-04T16:40:36,810   copying polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA
2022-07-04T16:40:36,814   creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply
2022-07-04T16:40:36,815   copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply
2022-07-04T16:40:36,834   copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply
2022-07-04T16:40:36,838   creating build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,839   copying polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,843   copying polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,847   copying polyply/tests/test_data/polyply/PE.martini.2.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,850   copying polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,855   copying polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,858   copying polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,862   copying polyply/tests/test_data/polyply/PP.martini.2.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,866   copying polyply/tests/test_data/polyply/PS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,869   copying polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply
2022-07-04T16:40:36,873   creating build/lib/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:36,875   copying polyply/tests/test_data/simple_seq_files/test.fasta -> build/lib/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:36,879   copying polyply/tests/test_data/simple_seq_files/test.ig -> build/lib/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:36,882   copying polyply/tests/test_data/simple_seq_files/test.txt -> build/lib/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:36,886   copying polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/lib/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:36,890   copying polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/lib/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:36,894   copying polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/lib/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:36,897   copying polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/lib/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:36,901   creating build/lib/polyply/tests/test_data/struc_build
2022-07-04T16:40:36,902   copying polyply/tests/test_data/struc_build/PEO.itp -> build/lib/polyply/tests/test_data/struc_build
2022-07-04T16:40:36,907   copying polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/lib/polyply/tests/test_data/struc_build
2022-07-04T16:40:36,915   copying polyply/tests/test_data/struc_build/system.top -> build/lib/polyply/tests/test_data/struc_build
2022-07-04T16:40:36,919   creating build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:36,920   copying polyply/tests/test_data/topology_test/W.itp -> build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:36,924   copying polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:36,953   copying polyply/tests/test_data/topology_test/molecule_0.itp -> build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:36,964   copying polyply/tests/test_data/topology_test/pdb.top -> build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:36,967   copying polyply/tests/test_data/topology_test/system.top -> build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:36,971   copying polyply/tests/test_data/topology_test/test.gro -> build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:36,975   copying polyply/tests/test_data/topology_test/test.itp -> build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:36,979   copying polyply/tests/test_data/topology_test/test.pdb -> build/lib/polyply/tests/test_data/topology_test
2022-07-04T16:40:37,149   running build_scripts
2022-07-04T16:40:37,150   creating build/scripts-3.7
2022-07-04T16:40:37,152   copying and adjusting bin/polyply -> build/scripts-3.7
2022-07-04T16:40:37,156   changing mode of build/scripts-3.7/polyply from 644 to 755
2022-07-04T16:40:37,158   installing to build/bdist.linux-armv7l/wheel
2022-07-04T16:40:37,158   running install
2022-07-04T16:40:37,277   [pbr] Generating AUTHORS
2022-07-04T16:40:37,307   [pbr] AUTHORS complete (0.0s)
2022-07-04T16:40:37,308   running install_lib
2022-07-04T16:40:37,956   creating build/bdist.linux-armv7l
2022-07-04T16:40:37,957   creating build/bdist.linux-armv7l/wheel
2022-07-04T16:40:37,960   creating build/bdist.linux-armv7l/wheel/polyply
2022-07-04T16:40:37,963   creating build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,965   copying build/lib/polyply/src/logging.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,968   copying build/lib/polyply/src/graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,972   copying build/lib/polyply/src/build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,977   copying build/lib/polyply/src/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,980   copying build/lib/polyply/src/minimizer.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,984   copying build/lib/polyply/src/gen_itp.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,987   copying build/lib/polyply/src/meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,992   copying build/lib/polyply/src/load_library.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,995   copying build/lib/polyply/src/linalg_functions.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:37,999   copying build/lib/polyply/src/top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,003   copying build/lib/polyply/src/apply_modifications.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,006   copying build/lib/polyply/src/gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,010   copying build/lib/polyply/src/polyply_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,014   copying build/lib/polyply/src/check_residue_equivalence.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,018   copying build/lib/polyply/src/apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,022   copying build/lib/polyply/src/ff_parser_sub.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,026   copying build/lib/polyply/src/gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,030   copying build/lib/polyply/src/random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,034   copying build/lib/polyply/src/map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,039   copying build/lib/polyply/src/processor.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,042   copying build/lib/polyply/src/generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,046   copying build/lib/polyply/src/build_system.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,050   copying build/lib/polyply/src/virtual_site_builder.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,054   copying build/lib/polyply/src/persistence.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,058   copying build/lib/polyply/src/backmap.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,062   copying build/lib/polyply/src/nonbond_engine.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,066   copying build/lib/polyply/src/annotate_ligands.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,070   copying build/lib/polyply/src/topology.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,075   copying build/lib/polyply/src/restraints.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,079   copying build/lib/polyply/src/simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/src
2022-07-04T16:40:38,083   copying build/lib/polyply/__init__.py -> build/bdist.linux-armv7l/wheel/polyply
2022-07-04T16:40:38,088   creating build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,090   copying build/lib/polyply/tests/test_gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,094   copying build/lib/polyply/tests/test_load_library.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,097   copying build/lib/polyply/tests/test_polyply_input.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,101   copying build/lib/polyply/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,104   copying build/lib/polyply/tests/test_persistence.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,108   copying build/lib/polyply/tests/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,111   copying build/lib/polyply/tests/test_top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,116   copying build/lib/polyply/tests/example_fixtures.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,119   copying build/lib/polyply/tests/test_linalg.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,122   copying build/lib/polyply/tests/test_map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,126   copying build/lib/polyply/tests/test_generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,130   copying build/lib/polyply/tests/test_random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,134   copying build/lib/polyply/tests/test_topology.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,140   copying build/lib/polyply/tests/test_vs_builder.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,143   copying build/lib/polyply/tests/.coverage -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,149   copying build/lib/polyply/tests/test_apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,154   copying build/lib/polyply/tests/test_simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,158   copying build/lib/polyply/tests/test_restraints.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,161   copying build/lib/polyply/tests/test_ff_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,164   copying build/lib/polyply/tests/test_lib_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,168   copying build/lib/polyply/tests/test_annotate_lingads.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,172   copying build/lib/polyply/tests/test_residue_check.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,176   copying build/lib/polyply/tests/test_build_system.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,180   copying build/lib/polyply/tests/test_build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,184   copying build/lib/polyply/tests/test_gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,187   copying build/lib/polyply/tests/test_gen_params.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,192   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data
2022-07-04T16:40:38,195   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp
2022-07-04T16:40:38,197   copying build/lib/polyply/tests/test_data/itp/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp
2022-07-04T16:40:38,201   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,203   copying build/lib/polyply/tests/test_data/topology_test/W.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,206   copying build/lib/polyply/tests/test_data/topology_test/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,209   copying build/lib/polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,240   copying build/lib/polyply/tests/test_data/topology_test/test.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,243   copying build/lib/polyply/tests/test_data/topology_test/pdb.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,246   copying build/lib/polyply/tests/test_data/topology_test/test.pdb -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,255   copying build/lib/polyply/tests/test_data/topology_test/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,265   copying build/lib/polyply/tests/test_data/topology_test/test.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test
2022-07-04T16:40:38,269   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:38,271   copying build/lib/polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:38,275   copying build/lib/polyply/tests/test_data/simple_seq_files/test.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:38,279   copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:38,283   copying build/lib/polyply/tests/test_data/simple_seq_files/test.txt -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:38,287   copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:38,290   copying build/lib/polyply/tests/test_data/simple_seq_files/test.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:38,294   copying build/lib/polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files
2022-07-04T16:40:38,299   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff
2022-07-04T16:40:38,301   copying build/lib/polyply/tests/test_data/ff/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff
2022-07-04T16:40:38,308   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params
2022-07-04T16:40:38,311   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:38,313   copying build/lib/polyply/tests/test_data/gen_params/output/PS_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:38,318   copying build/lib/polyply/tests/test_data/gen_params/output/test_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:38,321   copying build/lib/polyply/tests/test_data/gen_params/output/P3HT_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:38,325   copying build/lib/polyply/tests/test_data/gen_params/output/PPI_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:38,328   copying build/lib/polyply/tests/test_data/gen_params/output/PEO_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:38,331   copying build/lib/polyply/tests/test_data/gen_params/output/test_edge_attr_out.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/output
2022-07-04T16:40:38,336   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:38,337   copying build/lib/polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:38,341   copying build/lib/polyply/tests/test_data/gen_params/ref/end.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:38,344   copying build/lib/polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:38,347   copying build/lib/polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:38,351   copying build/lib/polyply/tests/test_data/gen_params/ref/G3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:38,354   copying build/lib/polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:38,358   copying build/lib/polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref
2022-07-04T16:40:38,363   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,364   copying build/lib/polyply/tests/test_data/gen_params/input/test.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,368   copying build/lib/polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,371   copying build/lib/polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,374   copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,377   copying build/lib/polyply/tests/test_data/gen_params/input/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,380   copying build/lib/polyply/tests/test_data/gen_params/input/PPI.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,384   copying build/lib/polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,387   copying build/lib/polyply/tests/test_data/gen_params/input/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,390   copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input
2022-07-04T16:40:38,394   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,396   copying build/lib/polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,399   copying build/lib/polyply/tests/test_data/polyply/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,403   copying build/lib/polyply/tests/test_data/polyply/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,406   copying build/lib/polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,409   copying build/lib/polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,412   copying build/lib/polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,416   copying build/lib/polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,419   copying build/lib/polyply/tests/test_data/polyply/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,423   copying build/lib/polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply
2022-07-04T16:40:38,428   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build
2022-07-04T16:40:38,430   copying build/lib/polyply/tests/test_data/struc_build/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build
2022-07-04T16:40:38,434   copying build/lib/polyply/tests/test_data/struc_build/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build
2022-07-04T16:40:38,438   copying build/lib/polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build
2022-07-04T16:40:38,446   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json
2022-07-04T16:40:38,449   copying build/lib/polyply/tests/test_data/json/single_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json
2022-07-04T16:40:38,455   copying build/lib/polyply/tests/test_data/json/double_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json
2022-07-04T16:40:38,458   copying build/lib/polyply/tests/test_data/json/hyperbranched.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json
2022-07-04T16:40:38,461   copying build/lib/polyply/tests/test_data/json/fail.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json
2022-07-04T16:40:38,464   copying build/lib/polyply/tests/test_data/json/linear_rev.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json
2022-07-04T16:40:38,468   copying build/lib/polyply/tests/test_data/json/linear.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json
2022-07-04T16:40:38,472   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests
2022-07-04T16:40:38,474   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6
2022-07-04T16:40:38,477   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT
2022-07-04T16:40:38,480   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply
2022-07-04T16:40:38,481   copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply
2022-07-04T16:40:38,488   copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply
2022-07-04T16:40:38,493   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3
2022-07-04T16:40:38,497   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE
2022-07-04T16:40:38,500   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply
2022-07-04T16:40:38,502   copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply
2022-07-04T16:40:38,506   copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply
2022-07-04T16:40:38,510   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO
2022-07-04T16:40:38,512   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply
2022-07-04T16:40:38,514   copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply
2022-07-04T16:40:38,517   copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply
2022-07-04T16:40:38,522   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS
2022-07-04T16:40:38,524   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply
2022-07-04T16:40:38,526   copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply
2022-07-04T16:40:38,529   copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply
2022-07-04T16:40:38,534   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT
2022-07-04T16:40:38,537   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply
2022-07-04T16:40:38,539   copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply
2022-07-04T16:40:38,545   copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply
2022-07-04T16:40:38,549   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE
2022-07-04T16:40:38,552   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply
2022-07-04T16:40:38,553   copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply
2022-07-04T16:40:38,557   copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply
2022-07-04T16:40:38,563   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT
2022-07-04T16:40:38,564   copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT
2022-07-04T16:40:38,573   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply
2022-07-04T16:40:38,575   copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply
2022-07-04T16:40:38,580   copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply
2022-07-04T16:40:38,584   copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT
2022-07-04T16:40:38,590   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX
2022-07-04T16:40:38,593   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply
2022-07-04T16:40:38,595   copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply
2022-07-04T16:40:38,600   copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply
2022-07-04T16:40:38,603   copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/input.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX
2022-07-04T16:40:38,609   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66
2022-07-04T16:40:38,611   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4
2022-07-04T16:40:38,614   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply
2022-07-04T16:40:38,615   copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply
2022-07-04T16:40:38,620   copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply
2022-07-04T16:40:38,624   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE
2022-07-04T16:40:38,626   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply
2022-07-04T16:40:38,628   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply
2022-07-04T16:40:38,632   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply
2022-07-04T16:40:38,635   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE
2022-07-04T16:40:38,640   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP
2022-07-04T16:40:38,642   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply
2022-07-04T16:40:38,644   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply
2022-07-04T16:40:38,647   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply
2022-07-04T16:40:38,651   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP
2022-07-04T16:40:38,655   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS
2022-07-04T16:40:38,656   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS
2022-07-04T16:40:38,661   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply
2022-07-04T16:40:38,662   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply
2022-07-04T16:40:38,667   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply
2022-07-04T16:40:38,671   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA
2022-07-04T16:40:38,673   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA
2022-07-04T16:40:38,677   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply
2022-07-04T16:40:38,679   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply
2022-07-04T16:40:38,682   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply
2022-07-04T16:40:38,687   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA
2022-07-04T16:40:38,688   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA
2022-07-04T16:40:38,693   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply
2022-07-04T16:40:38,695   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply
2022-07-04T16:40:38,699   copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply
2022-07-04T16:40:38,703   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1
2022-07-04T16:40:38,706   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA
2022-07-04T16:40:38,707   copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA
2022-07-04T16:40:38,712   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply
2022-07-04T16:40:38,713   copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply
2022-07-04T16:40:38,730   copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply
2022-07-04T16:40:38,733   copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA
2022-07-04T16:40:38,743   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen
2022-07-04T16:40:38,746   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO
2022-07-04T16:40:38,748   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply
2022-07-04T16:40:38,750   copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply
2022-07-04T16:40:38,756   copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply
2022-07-04T16:40:38,760   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2
2022-07-04T16:40:38,763   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO
2022-07-04T16:40:38,767   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply
2022-07-04T16:40:38,769   copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply
2022-07-04T16:40:38,774   copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply
2022-07-04T16:40:38,779   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS
2022-07-04T16:40:38,782   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply
2022-07-04T16:40:38,784   copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply
2022-07-04T16:40:38,789   copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply
2022-07-04T16:40:38,794   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA
2022-07-04T16:40:38,797   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply
2022-07-04T16:40:38,799   copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply
2022-07-04T16:40:38,822   copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply
2022-07-04T16:40:38,826   copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA
2022-07-04T16:40:38,831   copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA
2022-07-04T16:40:38,846   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE
2022-07-04T16:40:38,849   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply
2022-07-04T16:40:38,850   copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply
2022-07-04T16:40:38,854   copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply
2022-07-04T16:40:38,857   copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE
2022-07-04T16:40:38,862   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL
2022-07-04T16:40:38,863   copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL
2022-07-04T16:40:38,868   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply
2022-07-04T16:40:38,869   copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply
2022-07-04T16:40:38,874   copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply
2022-07-04T16:40:38,879   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq
2022-07-04T16:40:38,881   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:38,883   copying build/lib/polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:38,887   copying build/lib/polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:38,890   copying build/lib/polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:38,899   copying build/lib/polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:38,908   copying build/lib/polyply/tests/test_data/gen_seq/output/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output
2022-07-04T16:40:38,912   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref
2022-07-04T16:40:38,913   copying build/lib/polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref
2022-07-04T16:40:38,919   copying build/lib/polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref
2022-07-04T16:40:38,923   copying build/lib/polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref
2022-07-04T16:40:38,928   creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input
2022-07-04T16:40:38,929   copying build/lib/polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input
2022-07-04T16:40:38,936   copying build/lib/polyply/tests/test_meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,940   copying build/lib/polyply/tests/test_optimize_geometry.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,945   copying build/lib/polyply/tests/test_backmap.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,949   copying build/lib/polyply/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,954   copying build/lib/polyply/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,958   copying build/lib/polyply/tests/test_nb_engine.py -> build/bdist.linux-armv7l/wheel/polyply/tests
2022-07-04T16:40:38,964   creating build/bdist.linux-armv7l/wheel/polyply/data
2022-07-04T16:40:38,967   creating build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6
2022-07-04T16:40:38,969   copying build/lib/polyply/data/gromos53A6/Hter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6
2022-07-04T16:40:38,973   copying build/lib/polyply/data/gromos53A6/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6
2022-07-04T16:40:38,977   copying build/lib/polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6
2022-07-04T16:40:38,982   copying build/lib/polyply/data/gromos53A6/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6
2022-07-04T16:40:38,986   copying build/lib/polyply/data/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/data
2022-07-04T16:40:38,991   creating build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:38,993   copying build/lib/polyply/data/martini3/PPE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:38,998   copying build/lib/polyply/data/martini3/PS_PEO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,002   copying build/lib/polyply/data/martini3/PSS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,006   copying build/lib/polyply/data/martini3/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,011   copying build/lib/polyply/data/martini3/PE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,015   copying build/lib/polyply/data/martini3/dextran.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,018   copying build/lib/polyply/data/martini3/PEL_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,022   copying build/lib/polyply/data/martini3/PS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,027   copying build/lib/polyply/data/martini3/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,031   copying build/lib/polyply/data/martini3/P3HT.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,035   copying build/lib/polyply/data/martini3/PVA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,039   copying build/lib/polyply/data/martini3/PMMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,043   copying build/lib/polyply/data/martini3/PMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,047   copying build/lib/polyply/data/martini3/PEO.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3
2022-07-04T16:40:39,052   creating build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,055   copying build/lib/polyply/data/2016H66/polyether_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,059   copying build/lib/polyply/data/2016H66/polyether_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,063   copying build/lib/polyply/data/2016H66/citation.bib -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,067   copying build/lib/polyply/data/2016H66/chiral_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,070   copying build/lib/polyply/data/2016H66/polyvinyl_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,075   copying build/lib/polyply/data/2016H66/polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,078   copying build/lib/polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,082   copying build/lib/polyply/data/2016H66/terminal_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66
2022-07-04T16:40:39,086   creating build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1
2022-07-04T16:40:39,088   copying build/lib/polyply/data/parmbsc1/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1
2022-07-04T16:40:39,091   copying build/lib/polyply/data/parmbsc1/dna_final.ff -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1
2022-07-04T16:40:39,099   creating build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen
2022-07-04T16:40:39,100   copying build/lib/polyply/data/oplsaaLigParGen/OHter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen
2022-07-04T16:40:39,103   copying build/lib/polyply/data/oplsaaLigParGen/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen
2022-07-04T16:40:39,107   copying build/lib/polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen
2022-07-04T16:40:39,111   copying build/lib/polyply/data/oplsaaLigParGen/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen
2022-07-04T16:40:39,115   creating build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta
2022-07-04T16:40:39,116   copying build/lib/polyply/data/martini3_beta/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta
2022-07-04T16:40:39,120   copying build/lib/polyply/data/martini3_beta/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta
2022-07-04T16:40:39,124   creating build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,126   copying build/lib/polyply/data/martini2/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,129   copying build/lib/polyply/data/martini2/DNA_M2.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,133   copying build/lib/polyply/data/martini2/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,136   copying build/lib/polyply/data/martini2/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,140   copying build/lib/polyply/data/martini2/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,143   copying build/lib/polyply/data/martini2/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,146   copying build/lib/polyply/data/martini2/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,149   copying build/lib/polyply/data/martini2/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,152   copying build/lib/polyply/data/martini2/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,156   copying build/lib/polyply/data/martini2/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2
2022-07-04T16:40:39,159   running install_egg_info
2022-07-04T16:40:39,806   Copying polyply.egg-info to build/bdist.linux-armv7l/wheel/polyply-1.3.1-py3.7.egg-info
2022-07-04T16:40:39,836   running install_scripts
2022-07-04T16:40:39,838   creating build/bdist.linux-armv7l/wheel/polyply-1.3.1.data
2022-07-04T16:40:39,838   creating build/bdist.linux-armv7l/wheel/polyply-1.3.1.data/scripts
2022-07-04T16:40:39,841   copying build/scripts-3.7/polyply -> build/bdist.linux-armv7l/wheel/polyply-1.3.1.data/scripts
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2022-07-04T16:40:39,926   creating '/tmp/pip-wheel-jp3gumpn/tmpz1w_3c91/polyply-1.3.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
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2022-07-04T16:40:40,138   adding 'polyply/src/map_to_molecule.py'
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2022-07-04T16:40:40,146   adding 'polyply/src/minimizer.py'
2022-07-04T16:40:40,151   adding 'polyply/src/nonbond_engine.py'
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2022-07-04T16:40:40,158   adding 'polyply/src/polyply_parser.py'
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2022-07-04T16:40:40,172   adding 'polyply/src/simple_seq_parsers.py'
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2022-07-04T16:40:40,988   adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command'
2022-07-04T16:40:40,992   adding 'polyply/tests/test_data/polyply/P3HT.martini.2.itp'
2022-07-04T16:40:40,994   adding 'polyply/tests/test_data/polyply/PDADMA.martini.2.itp'
2022-07-04T16:40:40,997   adding 'polyply/tests/test_data/polyply/PE.martini.2.itp'
2022-07-04T16:40:40,999   adding 'polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp'
2022-07-04T16:40:41,001   adding 'polyply/tests/test_data/polyply/PEO.martini.2.itp'
2022-07-04T16:40:41,004   adding 'polyply/tests/test_data/polyply/PEO.martini.3.itp'
2022-07-04T16:40:41,006   adding 'polyply/tests/test_data/polyply/PP.martini.2.itp'
2022-07-04T16:40:41,009   adding 'polyply/tests/test_data/polyply/PS.martini.2.itp'
2022-07-04T16:40:41,011   adding 'polyply/tests/test_data/polyply/PSS.martini.2.itp'
2022-07-04T16:40:41,015   adding 'polyply/tests/test_data/simple_seq_files/test.fasta'
2022-07-04T16:40:41,017   adding 'polyply/tests/test_data/simple_seq_files/test.ig'
2022-07-04T16:40:41,019   adding 'polyply/tests/test_data/simple_seq_files/test.txt'
2022-07-04T16:40:41,021   adding 'polyply/tests/test_data/simple_seq_files/test_RNA.fasta'
2022-07-04T16:40:41,023   adding 'polyply/tests/test_data/simple_seq_files/test_RNA.ig'
2022-07-04T16:40:41,025   adding 'polyply/tests/test_data/simple_seq_files/test_circle.ig'
2022-07-04T16:40:41,027   adding 'polyply/tests/test_data/simple_seq_files/test_fail.ig'
2022-07-04T16:40:41,031   adding 'polyply/tests/test_data/struc_build/PEO.itp'
2022-07-04T16:40:41,042   adding 'polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp'
2022-07-04T16:40:41,045   adding 'polyply/tests/test_data/struc_build/system.top'
2022-07-04T16:40:41,049   adding 'polyply/tests/test_data/topology_test/W.itp'
2022-07-04T16:40:41,134   adding 'polyply/tests/test_data/topology_test/ffnonbonded.itp'
2022-07-04T16:40:41,184   adding 'polyply/tests/test_data/topology_test/molecule_0.itp'
2022-07-04T16:40:41,189   adding 'polyply/tests/test_data/topology_test/pdb.top'
2022-07-04T16:40:41,191   adding 'polyply/tests/test_data/topology_test/system.top'
2022-07-04T16:40:41,193   adding 'polyply/tests/test_data/topology_test/test.gro'
2022-07-04T16:40:41,196   adding 'polyply/tests/test_data/topology_test/test.itp'
2022-07-04T16:40:41,227   adding 'polyply/tests/test_data/topology_test/test.pdb'
2022-07-04T16:40:41,235   adding 'polyply-1.3.1.data/scripts/polyply'
2022-07-04T16:40:41,240   adding 'polyply-1.3.1.dist-info/AUTHORS'
2022-07-04T16:40:41,244   adding 'polyply-1.3.1.dist-info/LICENSE'
2022-07-04T16:40:41,247   adding 'polyply-1.3.1.dist-info/METADATA'
2022-07-04T16:40:41,249   adding 'polyply-1.3.1.dist-info/WHEEL'
2022-07-04T16:40:41,250   adding 'polyply-1.3.1.dist-info/pbr.json'
2022-07-04T16:40:41,252   adding 'polyply-1.3.1.dist-info/top_level.txt'
2022-07-04T16:40:41,261   adding 'polyply-1.3.1.dist-info/RECORD'
2022-07-04T16:40:41,293   removing build/bdist.linux-armv7l/wheel
2022-07-04T16:40:41,452   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,453       ############################
2022-07-04T16:40:41,454       # Package would be ignored #
2022-07-04T16:40:41,454       ############################
2022-07-04T16:40:41,454       Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' as an importable package, however it is
2022-07-04T16:40:41,455       included in the distribution as "data".
2022-07-04T16:40:41,455       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,455       therefore is considered deprecated).

2022-07-04T16:40:41,456       Please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' is included as a package by using
2022-07-04T16:40:41,456       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,457       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,457       documentation page.


2022-07-04T16:40:41,458   !!

2022-07-04T16:40:41,459     check.warn(importable)
2022-07-04T16:40:41,459   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,460       ############################
2022-07-04T16:40:41,460       # Package would be ignored #
2022-07-04T16:40:41,461       ############################
2022-07-04T16:40:41,461       Python recognizes 'polyply.tests.test_data.library_tests.martini3.PS.polyply' as an importable package, however it is
2022-07-04T16:40:41,461       included in the distribution as "data".
2022-07-04T16:40:41,462       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,462       therefore is considered deprecated).

2022-07-04T16:40:41,463       Please make sure that 'polyply.tests.test_data.library_tests.martini3.PS.polyply' is included as a package by using
2022-07-04T16:40:41,463       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,464       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,464       documentation page.


2022-07-04T16:40:41,465   !!

2022-07-04T16:40:41,466     check.warn(importable)
2022-07-04T16:40:41,466   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,468       ############################
2022-07-04T16:40:41,468       # Package would be ignored #
2022-07-04T16:40:41,469       ############################
2022-07-04T16:40:41,469       Python recognizes 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' as an importable package, however it is
2022-07-04T16:40:41,470       included in the distribution as "data".
2022-07-04T16:40:41,470       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,470       therefore is considered deprecated).

2022-07-04T16:40:41,471       Please make sure that 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' is included as a package by using
2022-07-04T16:40:41,472       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,473       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,473       documentation page.


2022-07-04T16:40:41,474   !!

2022-07-04T16:40:41,475     check.warn(importable)
2022-07-04T16:40:41,475   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,476       ############################
2022-07-04T16:40:41,477       # Package would be ignored #
2022-07-04T16:40:41,477       ############################
2022-07-04T16:40:41,478       Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA' as an importable package, however it is
2022-07-04T16:40:41,478       included in the distribution as "data".
2022-07-04T16:40:41,479       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,479       therefore is considered deprecated).

2022-07-04T16:40:41,480       Please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA' is included as a package by using
2022-07-04T16:40:41,480       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,481       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,482       documentation page.


2022-07-04T16:40:41,483   !!

2022-07-04T16:40:41,484     check.warn(importable)
2022-07-04T16:40:41,484   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,486       ############################
2022-07-04T16:40:41,486       # Package would be ignored #
2022-07-04T16:40:41,486       ############################
2022-07-04T16:40:41,487       Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' as an importable package, however it is
2022-07-04T16:40:41,487       included in the distribution as "data".
2022-07-04T16:40:41,488       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,488       therefore is considered deprecated).

2022-07-04T16:40:41,489       Please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' is included as a package by using
2022-07-04T16:40:41,489       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,490       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,491       documentation page.


2022-07-04T16:40:41,492   !!

2022-07-04T16:40:41,492     check.warn(importable)
2022-07-04T16:40:41,493   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,494       ############################
2022-07-04T16:40:41,494       # Package would be ignored #
2022-07-04T16:40:41,495       ############################
2022-07-04T16:40:41,495       Python recognizes 'polyply.tests.test_data.polyply' as an importable package, however it is
2022-07-04T16:40:41,495       included in the distribution as "data".
2022-07-04T16:40:41,496       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,496       therefore is considered deprecated).

2022-07-04T16:40:41,497       Please make sure that 'polyply.tests.test_data.polyply' is included as a package by using
2022-07-04T16:40:41,497       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,498       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,498       documentation page.


2022-07-04T16:40:41,500   !!

2022-07-04T16:40:41,501     check.warn(importable)
2022-07-04T16:40:41,501   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,502       ############################
2022-07-04T16:40:41,503       # Package would be ignored #
2022-07-04T16:40:41,503       ############################
2022-07-04T16:40:41,503       Python recognizes 'polyply.tests.test_data.simple_seq_files' as an importable package, however it is
2022-07-04T16:40:41,504       included in the distribution as "data".
2022-07-04T16:40:41,504       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,505       therefore is considered deprecated).

2022-07-04T16:40:41,506       Please make sure that 'polyply.tests.test_data.simple_seq_files' is included as a package by using
2022-07-04T16:40:41,506       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,507       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,508       documentation page.


2022-07-04T16:40:41,509   !!

2022-07-04T16:40:41,510     check.warn(importable)
2022-07-04T16:40:41,510   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,511       ############################
2022-07-04T16:40:41,512       # Package would be ignored #
2022-07-04T16:40:41,512       ############################
2022-07-04T16:40:41,513       Python recognizes 'polyply.tests.test_data.struc_build' as an importable package, however it is
2022-07-04T16:40:41,513       included in the distribution as "data".
2022-07-04T16:40:41,513       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,514       therefore is considered deprecated).

2022-07-04T16:40:41,515       Please make sure that 'polyply.tests.test_data.struc_build' is included as a package by using
2022-07-04T16:40:41,515       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,516       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,516       documentation page.


2022-07-04T16:40:41,517   !!

2022-07-04T16:40:41,517     check.warn(importable)
2022-07-04T16:40:41,518   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning:     !!


2022-07-04T16:40:41,519       ############################
2022-07-04T16:40:41,519       # Package would be ignored #
2022-07-04T16:40:41,519       ############################
2022-07-04T16:40:41,520       Python recognizes 'polyply.tests.test_data.topology_test' as an importable package, however it is
2022-07-04T16:40:41,520       included in the distribution as "data".
2022-07-04T16:40:41,520       This behavior is likely to change in future versions of setuptools (and
2022-07-04T16:40:41,521       therefore is considered deprecated).

2022-07-04T16:40:41,521       Please make sure that 'polyply.tests.test_data.topology_test' is included as a package by using
2022-07-04T16:40:41,522       setuptools' `packages` configuration field or the proper discovery methods.

2022-07-04T16:40:41,522       You can read more about "package discovery" and "data files" on setuptools
2022-07-04T16:40:41,523       documentation page.


2022-07-04T16:40:41,524   !!

2022-07-04T16:40:41,525     check.warn(importable)
2022-07-04T16:40:41,736   Building wheel for polyply (pyproject.toml): finished with status 'done'
2022-07-04T16:40:41,784   Created wheel for polyply: filename=polyply-1.3.1-py2.py3-none-any.whl size=614575 sha256=b0b3e19fb070225282deb01f6a7ecb6ee818e5ea427d82671643c3cdfe77d223
2022-07-04T16:40:41,786   Stored in directory: /tmp/pip-ephem-wheel-cache-2nl344qa/wheels/fb/30/39/f2c40d7b0b9f03f0ab29f38cd37e4fb8c467ce89fa41fef480
2022-07-04T16:40:41,829 Successfully built polyply
2022-07-04T16:40:41,927 Removed build tracker: '/tmp/pip-build-tracker-omvxd91q'