2022-07-05T10:21:35,097 Created temporary directory: /tmp/pip-ephem-wheel-cache-ya4wvwyx 2022-07-05T10:21:35,102 Created temporary directory: /tmp/pip-build-tracker-5wvieh0a 2022-07-05T10:21:35,103 Initialized build tracking at /tmp/pip-build-tracker-5wvieh0a 2022-07-05T10:21:35,104 Created build tracker: /tmp/pip-build-tracker-5wvieh0a 2022-07-05T10:21:35,104 Entered build tracker: /tmp/pip-build-tracker-5wvieh0a 2022-07-05T10:21:35,105 Created temporary directory: /tmp/pip-wheel-8j658m_7 2022-07-05T10:21:35,179 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-05T10:21:35,188 2 location(s) to search for versions of scirpy: 2022-07-05T10:21:35,188 * https://pypi.org/simple/scirpy/ 2022-07-05T10:21:35,188 * https://www.piwheels.org/simple/scirpy/ 2022-07-05T10:21:35,189 Fetching project page and analyzing links: https://pypi.org/simple/scirpy/ 2022-07-05T10:21:35,190 Getting page https://pypi.org/simple/scirpy/ 2022-07-05T10:21:35,193 Found index url https://pypi.org/simple 2022-07-05T10:21:35,336 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/2b/87/294b2db5a86fc0420d8472a732e49c53edfea03eea6f7244c0d8178c2eef/scirpy-0.0.1-py3-none-any.whl#sha256=38b6f7859fd1594845479c3beaf08c3bf492db9232c2ef7919887ceaac56980f (from https://pypi.org/simple/scirpy/) 2022-07-05T10:21:35,337 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/c1/0d/55deb716b55bf3fdba97a13b414a6435504b58c2783541e3a648b4ce524b/scirpy-0.1-py3-none-any.whl#sha256=e6dcea649c4445ca4da678562bacdf2a747a684ace877dc68d9d64710e70e137 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,338 Found link https://files.pythonhosted.org/packages/e4/e7/968694b1e6bef7fabd4f3d51ba8107e8c2531b3269659cd9efb330485006/scirpy-0.1.tar.gz#sha256=9d63691bff720df2a663049856d1c51faad1ac199bcaea1a24db9b06f201b3ab (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.1 2022-07-05T10:21:35,339 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/5d/14/f453797774d231cf8d873cc4017b57202ef6b9e63d88336baadd2cfbef2a/scirpy-0.1.1-py3-none-any.whl#sha256=ffb0ff81dc70197eb475e6b10036b2138a63947eb27a654a2669506c75667d27 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,340 Found link https://files.pythonhosted.org/packages/6f/98/93df2761c6f2f9db818972b716671e18fb53a54229d2bd4f9ee0093cb1a2/scirpy-0.1.1.tar.gz#sha256=fe34a1782046be275531810620e19aef2f0aed4df7958a7f8cf89265384e5950 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.1.1 2022-07-05T10:21:35,341 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/4e/d3/154dc4b761af9cb84c2847f6845ec5804cdd560fc46ac9dba7d3062fbc70/scirpy-0.1.2-py3-none-any.whl#sha256=178a9a8d5541e5c985f13182b1efe798a6a23a13698564085b98adc23a44b48b (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,342 Found link https://files.pythonhosted.org/packages/b5/66/35b338b503b03f4402cef50d194df7a2f5dfbf9a6b594f1d64b1382ba1f3/scirpy-0.1.2.tar.gz#sha256=7ed4038b634abce0b035ecd6dc47b695c68a8234d3635d4a234ac54ca5af6f32 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.1.2 2022-07-05T10:21:35,343 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/e4/35/e475df47b99a610357483f8d375dab86ef81b91ae94f5d822360cf843a81/scirpy-0.2-py3-none-any.whl#sha256=2e8f0e0c05a18e8de13fe274c1ed0cae0cbdeb36c750990292fc7df6a84d99b2 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,344 Found link https://files.pythonhosted.org/packages/18/75/627553f60af1b1b636e6cbf038cf6ee60575ece206a5e737bcf829f78682/scirpy-0.2.tar.gz#sha256=a1ac7e823a0f9eea8a8977035a6c4e4a393448da706c29055ac18cccdea6acee (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.2 2022-07-05T10:21:35,345 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/8e/af/49fd3d1bcc40ba97c5dc3be27e88899101a1f7e368fdcb3c6170a2e0b45e/scirpy-0.3-py3-none-any.whl#sha256=0dd0b007ff097c3c5dda11f41ed6d6ec5ce58c888e6087660af54baac30da09a (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,346 Found link https://files.pythonhosted.org/packages/db/07/9027996c75a175c8db97bfc5353eead9d44f50d6f9af62520cb513ba7076/scirpy-0.3.tar.gz#sha256=a00ebe8c42c52178450c3079922996f70c3bcc8cdfad7d1bdcb3433eaf56bbdb (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.3 2022-07-05T10:21:35,347 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/9f/99/2b8a921ef3b793407d56b60651d164a2c1a3560e46cc31362552680c87de/scirpy-0.4-py3-none-any.whl#sha256=5f29f02aeffe7e2b896f510b5d10b3acba723fe6737ee8848e4b2437d7299a74 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,348 Found link https://files.pythonhosted.org/packages/b7/5b/94a919bbc3ee1e8a62beb95c79f8c6183113f5946b9e1baa6d5ef5ecb772/scirpy-0.4.tar.gz#sha256=f1bbf5b37deb80ad2211a51367490ec45f4d7a5ac191cc65dcb48fecfeda48b0 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.4 2022-07-05T10:21:35,349 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/de/19/df4d8de48fbab8a927bbcff075c4ce209cf59e985b314acb2e0c91c9a76a/scirpy-0.4.1-py3-none-any.whl#sha256=94277a3c51aaaa08bfab88b21fd94cf17e90dd64b7dfbbf9aba75797086281b1 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,350 Found link https://files.pythonhosted.org/packages/76/3c/413d60aaf3b1b7e0b6d27c2f9a7edab73bcde8d411848998b4670c7557d8/scirpy-0.4.1.tar.gz#sha256=4a014730fdade13d1490a7fe06fec1c6a470ec7b5a0060c3d6d1a9c7bd9ddaf4 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.4.1 2022-07-05T10:21:35,351 Skipping link: No binaries 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https://files.pythonhosted.org/packages/9d/73/a8cf8bc4105958641eed539a6c81fe51723c339955ec9fc5ec2242afe4c6/scirpy-0.5.0.tar.gz#sha256=bc6d8b733e4dd38179b1d96f1b7dd9ff1a355585ce2f1465e24eb0d1f8586066 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.5.0 2022-07-05T10:21:35,355 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/84/bb/03425371ced2bb07b125e8d69a86ff92a822d188b37844cec822d290fa5e/scirpy-0.6.0-py3-none-any.whl#sha256=4159c1d1d2276b4117f1480988e0ed6c0274423f2eb90025b3b57f00a9ba52cb (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,356 Found link https://files.pythonhosted.org/packages/6b/02/4c9e1ce0b94c678c76913102a3cfd58e238104fd574b4585be8e6c00ba0e/scirpy-0.6.0.tar.gz#sha256=1a9214d3cac7f7e5d604620dc355594c3474c677ddfa9780e48a8c0e5c3d06f1 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.6.0 2022-07-05T10:21:35,357 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/83/6c/ca2da9be5c2466530f27f02c6303f679f34acab2231c630c3f040d840ef5/scirpy-0.6.1-py3-none-any.whl#sha256=cbbcc5359458e7356a028fd1df93b29a2ad70b144aaa1e60d0b8c987b838d09a (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,358 Found link https://files.pythonhosted.org/packages/84/9e/8b43cdf19c65935c68cc88dda9e16b25dd4876791f179918097f1d24a6e4/scirpy-0.6.1.tar.gz#sha256=406039af67875572826d3e2c79e12e702e153d63ee53c631670502653d803364 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.6), version: 0.6.1 2022-07-05T10:21:35,359 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/49/58/f738f345da5ba61baaaeee50030c1a7e054c49d83a348d440e770ba8765f/scirpy-0.7.0-py3-none-any.whl#sha256=02472c885a3b34de4c2b9efc2c5245c89f0797c5bd1e290e4a13d248b6e48c48 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2022-07-05T10:21:35,360 Found link https://files.pythonhosted.org/packages/7d/9c/696fa2e8b375102c01438f48bfba391e781b5deac62cafedfed662d974ca/scirpy-0.7.0.tar.gz#sha256=5faf6145bfc24f76e91b8a4838649fc4a4cd05933134898c09dfcb8340c89254 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.7.0 2022-07-05T10:21:35,361 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/bd/6f/cd4ce286c928a4febe63532c2ca1b0ed570f018f9545eb0274dd2a588504/scirpy-0.7.1-py3-none-any.whl#sha256=69e8dc9dae84cc51d9cb9477f01204b2b1a4c59c77603b5d61c6783377c1ef04 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2022-07-05T10:21:35,362 Found link https://files.pythonhosted.org/packages/23/a7/8d747c84137a1e531297ec6214a266a8e4fcc612fdc733941bed32d817a0/scirpy-0.7.1.tar.gz#sha256=864ec961736175b99a05354b546aad5c15a600970af4a0d35ef35cfd4c93a8dc (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.7.1 2022-07-05T10:21:35,363 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/22/4b/100ce2a068b154236e9680826ccf88bb044f3ab88abab2d679e6a7d891ca/scirpy-0.8.0-py3-none-any.whl#sha256=9194392637021cc7fb692fb48963a329d07f4a8ada8491f366364f559ee82696 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2022-07-05T10:21:35,364 Found link https://files.pythonhosted.org/packages/23/0c/a6fea62e0108d0d6da6a95fc66d6294c442adab16e826cfc86c098a94516/scirpy-0.8.0.tar.gz#sha256=6d98ea98a85b5f615e1e3dd12da41984cf15b64c3ffb5036a00586ec8f12d6d1 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.8.0 2022-07-05T10:21:35,365 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/1b/5f/74307d956743fb0a8b2df31e097c566b41e51e2f5a199d497e59cdc68b1d/scirpy-0.9.0-py3-none-any.whl#sha256=0e58c1c5a3a8b65cdbcb66322a292197f2291dc01e0b7e62b8e2673670eb2c07 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2022-07-05T10:21:35,366 Found link https://files.pythonhosted.org/packages/d9/6e/fe4eb190bc89f54014dd60ff6ea0154bce51a6b57417fd6fe6229a1fefc9/scirpy-0.9.0.tar.gz#sha256=84691ec59a93ce814c6dab672cae4813b74b4ec7e7a3a2060502c8f3d1b8ffcd (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.9.0 2022-07-05T10:21:35,367 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/05/95/feeb11b123bf186801911ad7a9c6ee4004f6e21c288bf8c032a332ac85c1/scirpy-0.9.1-py3-none-any.whl#sha256=3b4d051817a3300e4a5cfa2e1772c9fcf47a621d255c7b24f3ea9b3e2219588a (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2022-07-05T10:21:35,368 Found link https://files.pythonhosted.org/packages/e2/b8/d088a38f5f3db0901415ede0c2a202e885eaceea78eff8ee68701fa0c1dc/scirpy-0.9.1.tar.gz#sha256=585f7c4da32e50e8fd24db7d20cb12ec459077b0958104dc2b721a3ae387cb90 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.9.1 2022-07-05T10:21:35,369 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/80/cb/393c2849475c3a1b49ff533130f18e1d8382ba74591abf0bc27806519c81/scirpy-0.10.0-py3-none-any.whl#sha256=81f6c899feccfe94a94ea01223984711e5a33fa38a6901a9c7488c0c68aa5542 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2022-07-05T10:21:35,370 Found link https://files.pythonhosted.org/packages/c9/7f/5df1ca820d517fcf8cce6ec3ca1a569e57ce17e225446b606cab9cb38b8c/scirpy-0.10.0.tar.gz#sha256=9c3ea52c5fd68140add5b551fbde5899b4278d4bd8d99e66760a7c3a7cbc6edf (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.10.0 2022-07-05T10:21:35,370 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/e0/09/eae7acbff3a8e82722378549ea5fddd07c2711d0aa8b2bf9056bae31c176/scirpy-0.10.1-py3-none-any.whl#sha256=bfded22116696fc8d22d71a07afa78a2cceac4d49b4001b225977b87a612b47e (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2022-07-05T10:21:35,372 Found link https://files.pythonhosted.org/packages/12/9b/171147b32e198a14c5842216ed08b8eaea20472057366abab2cfe83c3ff1/scirpy-0.10.1.tar.gz#sha256=8680e89eaf13ba6a7d4bca3e9b4cd48c52d0435cbae02562eb5d4c46892e309a (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.10.1 2022-07-05T10:21:35,372 Skipping link: No binaries permitted for scirpy: https://files.pythonhosted.org/packages/df/99/f9d8a66d824151d3ee0e7bcba9ac87fb40c411506e8e5f5391762e90b8ab/scirpy-0.11.0-py3-none-any.whl#sha256=ff1d6e2c46194c69c51ee76f87ff6aaca4a377a9a679209986b720f00271d0c4 (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7) 2022-07-05T10:21:35,374 Found link https://files.pythonhosted.org/packages/c8/57/775aab2598fdce44dc61b229caebaa27c947248e7ba8e94a0efa23864915/scirpy-0.11.0.tar.gz#sha256=48f3bfb22709c171b6fc3280b4106a3749542f2b4501fd16046f5ce20b99c4ee (from https://pypi.org/simple/scirpy/) (requires-python:>= 3.7), version: 0.11.0 2022-07-05T10:21:35,375 Fetching project page and 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https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,620 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.1.2-py3-none-any.whl#sha256=178a9a8d5541e5c985f13182b1efe798a6a23a13698564085b98adc23a44b48b (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,620 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.1.1-py3-none-any.whl#sha256=ffb0ff81dc70197eb475e6b10036b2138a63947eb27a654a2669506c75667d27 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,621 Skipping link: No binaries permitted for scirpy: https://www.piwheels.org/simple/scirpy/scirpy-0.1-py3-none-any.whl#sha256=e6dcea649c4445ca4da678562bacdf2a747a684ace877dc68d9d64710e70e137 (from https://www.piwheels.org/simple/scirpy/) (requires-python:>= 3.6) 2022-07-05T10:21:35,621 Skipping link: not a file: https://www.piwheels.org/simple/scirpy/ 2022-07-05T10:21:35,622 Skipping link: not a file: https://pypi.org/simple/scirpy/ 2022-07-05T10:21:35,673 Given no hashes to check 1 links for project 'scirpy': discarding no candidates 2022-07-05T10:21:35,715 Collecting scirpy==0.11.0 2022-07-05T10:21:35,719 Created temporary directory: /tmp/pip-unpack-59o8f198 2022-07-05T10:21:35,812 Downloading scirpy-0.11.0.tar.gz (25.6 MB) 2022-07-05T10:21:44,717 Added scirpy==0.11.0 from https://files.pythonhosted.org/packages/c8/57/775aab2598fdce44dc61b229caebaa27c947248e7ba8e94a0efa23864915/scirpy-0.11.0.tar.gz#sha256=48f3bfb22709c171b6fc3280b4106a3749542f2b4501fd16046f5ce20b99c4ee to build tracker '/tmp/pip-build-tracker-5wvieh0a' 2022-07-05T10:21:44,744 Created temporary directory: /tmp/pip-build-env-g4qes8v7 2022-07-05T10:21:44,766 Created temporary directory: /tmp/pip-standalone-pip-ff0822wy 2022-07-05T10:21:47,151 Installing build dependencies: started 2022-07-05T10:21:47,153 Running command pip subprocess to install build dependencies 2022-07-05T10:21:58,586 Using pip 22.1.2 from /tmp/pip-standalone-pip-ff0822wy/__env_pip__.zip/pip (python 3.9) 2022-07-05T10:22:00,384 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-05T10:22:00,387 Ignoring importlib_metadata: markers 'python_version < "3.8"' don't match your environment 2022-07-05T10:22:01,105 Collecting flit_core<4,>=2 2022-07-05T10:22:01,146 Using cached https://www.piwheels.org/simple/flit-core/flit_core-3.7.1-py3-none-any.whl (60 kB) 2022-07-05T10:22:02,340 Collecting setuptools_scm 2022-07-05T10:22:02,394 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.4-py3-none-any.whl (42 kB) 2022-07-05T10:22:02,670 Collecting pytoml 2022-07-05T10:22:02,702 Using cached https://www.piwheels.org/simple/pytoml/pytoml-0.1.21-py2.py3-none-any.whl (8.5 kB) 2022-07-05T10:22:03,251 Collecting wheel 2022-07-05T10:22:03,285 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-07-05T10:22:07,190 Collecting setuptools 2022-07-05T10:22:07,457 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.1.0-py3-none-any.whl (1.2 MB) 2022-07-05T10:22:07,874 Collecting tomli>=1.0.0 2022-07-05T10:22:07,905 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2022-07-05T10:22:08,326 Collecting packaging>=20.0 2022-07-05T10:22:08,360 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2022-07-05T10:22:08,617 Collecting typing-extensions 2022-07-05T10:22:08,671 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB) 2022-07-05T10:22:09,382 Collecting pyparsing!=3.0.5,>=2.0.2 2022-07-05T10:22:09,424 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB) 2022-07-05T10:22:17,744 Installing collected packages: pytoml, wheel, typing-extensions, tomli, setuptools, pyparsing, flit_core, packaging, setuptools_scm 2022-07-05T10:22:18,162 Creating /tmp/pip-build-env-g4qes8v7/overlay/bin 2022-07-05T10:22:18,166 changing mode of /tmp/pip-build-env-g4qes8v7/overlay/bin/wheel to 755 2022-07-05T10:22:25,730 Successfully installed flit_core-3.7.1 packaging-21.3 pyparsing-3.0.9 pytoml-0.1.21 setuptools-63.1.0 setuptools_scm-7.0.4 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1 2022-07-05T10:22:26,506 Installing build dependencies: finished with status 'done' 2022-07-05T10:22:26,535 Getting requirements to build wheel: started 2022-07-05T10:22:26,537 Running command Getting requirements to build wheel 2022-07-05T10:22:27,231 Getting requirements to build wheel: finished with status 'done' 2022-07-05T10:22:27,693 Created temporary directory: /tmp/pip-standalone-pip-1x_82ikg 2022-07-05T10:22:29,977 Installing backend dependencies: started 2022-07-05T10:22:29,980 Running command pip subprocess to install backend dependencies 2022-07-05T10:22:41,295 Using pip 22.1.2 from /tmp/pip-standalone-pip-1x_82ikg/__env_pip__.zip/pip (python 3.9) 2022-07-05T10:22:43,382 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-05T10:22:45,107 Collecting tqdm>=4.44.1 2022-07-05T10:22:45,172 Using cached https://www.piwheels.org/simple/tqdm/tqdm-4.64.0-py2.py3-none-any.whl (78 kB) 2022-07-05T10:22:48,858 Collecting numpy>=1.17.0 2022-07-05T10:22:51,276 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.0-cp39-cp39-linux_armv7l.whl (12.3 MB) 2022-07-05T10:22:52,659 Collecting anndata>=0.7.6 2022-07-05T10:22:52,694 Downloading https://www.piwheels.org/simple/anndata/anndata-0.8.0-py3-none-any.whl (96 kB) 2022-07-05T10:22:52,756 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 96.1/96.1 kB 2.3 MB/s eta 0:00:00 2022-07-05T10:22:52,932 Collecting squarify 2022-07-05T10:22:52,957 Downloading https://www.piwheels.org/simple/squarify/squarify-0.4.3-py3-none-any.whl (4.3 kB) 2022-07-05T10:22:53,479 Collecting networkx>=2.5 2022-07-05T10:22:53,942 Using cached https://www.piwheels.org/simple/networkx/networkx-2.8.4-py3-none-any.whl (2.0 MB) 2022-07-05T10:22:54,653 Collecting scanpy>=1.6.0 2022-07-05T10:22:54,824 Using cached scanpy-1.9.1-py3-none-any.whl (2.0 MB) 2022-07-05T10:22:55,343 Collecting parasail!=1.2.1 2022-07-05T10:22:55,368 Downloading https://www.piwheels.org/simple/parasail/parasail-1.2.4-py2.py3-none-linux_armv7l.whl (4.6 MB) 2022-07-05T10:22:56,432 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 4.4 MB/s eta 0:00:00 2022-07-05T10:22:57,348 Collecting python-igraph 2022-07-05T10:22:57,367 Downloading https://www.piwheels.org/simple/python-igraph/python_igraph-0.9.11-py3-none-any.whl (9.1 kB) 2022-07-05T10:22:59,523 Collecting pandas>=1.0 2022-07-05T10:23:06,626 Using cached https://www.piwheels.org/simple/pandas/pandas-1.4.3-cp39-cp39-linux_armv7l.whl (36.1 MB) 2022-07-05T10:23:11,538 Collecting scikit-learn 2022-07-05T10:23:16,824 Using cached https://www.piwheels.org/simple/scikit-learn/scikit_learn-1.1.1-cp39-cp39-linux_armv7l.whl (26.0 MB) 2022-07-05T10:23:18,983 Collecting python-levenshtein 2022-07-05T10:23:19,039 Downloading https://www.piwheels.org/simple/python-levenshtein/python_Levenshtein-0.12.2-cp39-cp39-linux_armv7l.whl (155 kB) 2022-07-05T10:23:19,108 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 155.2/155.2 kB 3.1 MB/s eta 0:00:00 2022-07-05T10:23:19,433 Collecting airr>=1.2 2022-07-05T10:23:19,474 Downloading https://www.piwheels.org/simple/airr/airr-1.3.1-py3-none-any.whl (36 kB) 2022-07-05T10:23:19,892 Collecting adjustText>=0.7 2022-07-05T10:23:19,915 Downloading https://www.piwheels.org/simple/adjusttext/adjustText-0.7.3-py3-none-any.whl (7.8 kB) 2022-07-05T10:23:22,122 Collecting scipy 2022-07-05T10:23:36,398 Using cached https://www.piwheels.org/simple/scipy/SciPy-1.8.1-cp39-cp39-linux_armv7l.whl (72.2 MB) 2022-07-05T10:23:42,989 Link requires a different Python (3.9.2 not in: '>=3.6,<3.9'): https://files.pythonhosted.org/packages/d1/68/d872f91bcb57c00c54835beb950a9d9ceb99e497f167fa333e8eba968ecc/numba-0.52.0rc3.tar.gz#sha256=b197163771f1df168dbbf1a6f3eaba4fa1b0b6c4fd920c3454c0011a6aa06a0f (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.9) 2022-07-05T10:23:43,002 Link requires a different Python (3.9.2 not in: '>=3.6,<3.9'): https://files.pythonhosted.org/packages/46/e1/cbbc7c7967d9b10e54c852bf5bece0222a63bfb809d3354014c957ef1bda/numba-0.52.0.tar.gz#sha256=44661c5bd85e3d3619be0a40eedee34e397e9ccb3d4c458b70e10bf95d1ce933 (from https://pypi.org/simple/numba/) (requires-python:>=3.6,<3.9) 2022-07-05T10:23:44,100 Collecting numba>=0.41.0 2022-07-05T10:23:44,775 Using cached https://www.piwheels.org/simple/numba/numba-0.55.2-cp39-cp39-linux_armv7l.whl (3.0 MB) 2022-07-05T10:23:46,452 Collecting h5py>=3 2022-07-05T10:23:47,600 Using cached https://www.piwheels.org/simple/h5py/h5py-3.7.0-cp39-cp39-linux_armv7l.whl (5.7 MB) 2022-07-05T10:23:48,654 Collecting natsort 2022-07-05T10:23:48,679 Downloading https://www.piwheels.org/simple/natsort/natsort-8.1.0-py3-none-any.whl (37 kB) 2022-07-05T10:23:49,113 Collecting packaging>=20 2022-07-05T10:23:49,149 Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB) 2022-07-05T10:23:50,053 Collecting umap-learn>=0.3.10 2022-07-05T10:23:50,156 Using cached https://www.piwheels.org/simple/umap-learn/umap_learn-0.5.3-py3-none-any.whl (90 kB) 2022-07-05T10:23:50,766 Collecting joblib 2022-07-05T10:23:50,853 Using cached https://www.piwheels.org/simple/joblib/joblib-1.1.0-py2.py3-none-any.whl (306 kB) 2022-07-05T10:23:52,946 Collecting matplotlib>=3.4 2022-07-05T10:23:55,111 Using cached https://www.piwheels.org/simple/matplotlib/matplotlib-3.5.2-cp39-cp39-linux_armv7l.whl (10.7 MB) 2022-07-05T10:23:56,839 Collecting statsmodels>=0.10.0rc2 2022-07-05T10:24:00,816 Using cached https://www.piwheels.org/simple/statsmodels/statsmodels-0.13.2-cp39-cp39-linux_armv7l.whl (19.9 MB) 2022-07-05T10:24:02,821 Collecting patsy 2022-07-05T10:24:02,900 Using cached https://www.piwheels.org/simple/patsy/patsy-0.5.2-py2.py3-none-any.whl (233 kB) 2022-07-05T10:24:03,056 Collecting session-info 2022-07-05T10:24:03,075 Downloading https://www.piwheels.org/simple/session-info/session_info-1.0.0-py3-none-any.whl (8.0 kB) 2022-07-05T10:24:03,379 Collecting seaborn 2022-07-05T10:24:03,491 Using cached https://www.piwheels.org/simple/seaborn/seaborn-0.11.2-py3-none-any.whl (279 kB) 2022-07-05T10:24:04,066 Collecting igraph==0.9.11 2022-07-05T10:24:04,099 Downloading https://www.piwheels.org/simple/igraph/igraph-0.9.11-cp39-cp39-linux_armv7l.whl (2.0 MB) 2022-07-05T10:24:04,610 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 4.1 MB/s eta 0:00:00 2022-07-05T10:24:05,067 Collecting texttable>=1.6.2 2022-07-05T10:24:05,094 Downloading https://www.piwheels.org/simple/texttable/texttable-1.6.4-py2.py3-none-any.whl (10 kB) 2022-07-05T10:24:05,502 Collecting python-dateutil>=2.8.1 2022-07-05T10:24:05,584 Using cached https://www.piwheels.org/simple/python-dateutil/python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) 2022-07-05T10:24:06,563 Collecting pytz>=2020.1 2022-07-05T10:24:06,671 Using cached https://www.piwheels.org/simple/pytz/pytz-2022.1-py3-none-any.whl (511 kB) 2022-07-05T10:24:07,334 Collecting threadpoolctl>=2.0.0 2022-07-05T10:24:07,370 Using cached https://www.piwheels.org/simple/threadpoolctl/threadpoolctl-3.1.0-py3-none-any.whl (14 kB) 2022-07-05T10:24:11,504 Collecting setuptools 2022-07-05T10:24:11,790 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.1.0-py3-none-any.whl (1.2 MB) 2022-07-05T10:24:14,223 Collecting pyyaml>=3.12 2022-07-05T10:24:14,272 Using cached https://www.piwheels.org/simple/pyyaml/PyYAML-6.0-cp39-cp39-linux_armv7l.whl (45 kB) 2022-07-05T10:24:14,419 Collecting yamlordereddictloader>=0.4.0 2022-07-05T10:24:14,440 Downloading https://www.piwheels.org/simple/yamlordereddictloader/yamlordereddictloader-0.4.0-py3-none-any.whl (5.1 kB) 2022-07-05T10:24:15,665 Collecting llvmlite<0.39,>=0.38.0rc1 2022-07-05T10:24:15,708 Using cached llvmlite-0.38.1.tar.gz (129 kB) 2022-07-05T10:24:16,118 Preparing metadata (setup.py): started 2022-07-05T10:24:16,121 Running command python setup.py egg_info 2022-07-05T10:24:22,600 running egg_info 2022-07-05T10:24:22,603 creating /tmp/pip-pip-egg-info-opld8gb7/llvmlite.egg-info 2022-07-05T10:24:23,253 writing /tmp/pip-pip-egg-info-opld8gb7/llvmlite.egg-info/PKG-INFO 2022-07-05T10:24:23,818 writing dependency_links to /tmp/pip-pip-egg-info-opld8gb7/llvmlite.egg-info/dependency_links.txt 2022-07-05T10:24:27,177 writing top-level names to /tmp/pip-pip-egg-info-opld8gb7/llvmlite.egg-info/top_level.txt 2022-07-05T10:24:27,181 writing manifest file '/tmp/pip-pip-egg-info-opld8gb7/llvmlite.egg-info/SOURCES.txt' 2022-07-05T10:24:27,934 reading manifest file '/tmp/pip-pip-egg-info-opld8gb7/llvmlite.egg-info/SOURCES.txt' 2022-07-05T10:24:27,936 adding license file 'LICENSE' 2022-07-05T10:24:27,944 writing manifest file '/tmp/pip-pip-egg-info-opld8gb7/llvmlite.egg-info/SOURCES.txt' 2022-07-05T10:24:28,162 Preparing metadata (setup.py): finished with status 'done' 2022-07-05T10:24:28,406 Collecting numpy>=1.17.0 2022-07-05T10:24:31,262 Using cached https://www.piwheels.org/simple/numpy/numpy-1.22.4-cp39-cp39-linux_armv7l.whl (13.0 MB) 2022-07-05T10:24:36,397 Collecting pillow>=6.2.0 2022-07-05T10:24:36,652 Using cached https://www.piwheels.org/simple/pillow/Pillow-9.2.0-cp39-cp39-linux_armv7l.whl (1.1 MB) 2022-07-05T10:24:36,960 Collecting cycler>=0.10 2022-07-05T10:24:36,993 Using cached https://www.piwheels.org/simple/cycler/cycler-0.11.0-py3-none-any.whl (6.4 kB) 2022-07-05T10:24:37,583 Collecting pyparsing>=2.2.1 2022-07-05T10:24:37,625 Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB) 2022-07-05T10:24:38,837 Collecting fonttools>=4.22.0 2022-07-05T10:24:39,153 Using cached https://www.piwheels.org/simple/fonttools/fonttools-4.33.3-cp39-cp39-linux_armv7l.whl (1.3 MB) 2022-07-05T10:24:40,000 Collecting kiwisolver>=1.0.1 2022-07-05T10:24:40,274 Using cached https://www.piwheels.org/simple/kiwisolver/kiwisolver-1.4.3-cp39-cp39-linux_armv7l.whl (1.1 MB) 2022-07-05T10:24:40,876 Collecting six>=1.5 2022-07-05T10:24:40,906 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2022-07-05T10:24:42,096 Collecting pynndescent>=0.5 2022-07-05T10:24:42,134 Downloading https://www.piwheels.org/simple/pynndescent/pynndescent-0.5.7-py3-none-any.whl (56 kB) 2022-07-05T10:24:42,177 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.9/56.9 kB 2.2 MB/s eta 0:00:00 2022-07-05T10:24:43,083 Collecting stdlib-list 2022-07-05T10:24:43,107 Downloading https://www.piwheels.org/simple/stdlib-list/stdlib_list-0.8.0-py3-none-any.whl (63 kB) 2022-07-05T10:24:43,153 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 63.5/63.5 kB 2.0 MB/s eta 0:00:00 2022-07-05T10:24:44,896 Building wheels for collected packages: llvmlite 2022-07-05T10:24:44,901 Building wheel for llvmlite (setup.py): started 2022-07-05T10:24:44,903 Running command python setup.py bdist_wheel 2022-07-05T10:24:50,444 running bdist_wheel 2022-07-05T10:24:50,552 /usr/bin/python3 /tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ffi/build.py 2022-07-05T10:24:50,891 LLVM version... Traceback (most recent call last): 2022-07-05T10:24:50,892 File "/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ffi/build.py", line 220, in 2022-07-05T10:24:50,894 main() 2022-07-05T10:24:50,896 File "/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ffi/build.py", line 210, in main 2022-07-05T10:24:50,897 main_posix('linux', '.so') 2022-07-05T10:24:50,899 File "/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ffi/build.py", line 134, in main_posix 2022-07-05T10:24:50,901 raise RuntimeError(msg) from None 2022-07-05T10:24:50,903 RuntimeError: Could not find a `llvm-config` binary. There are a number of reasons this could occur, please see: https://llvmlite.readthedocs.io/en/latest/admin-guide/install.html#using-pip for help. 2022-07-05T10:24:50,939 error: command '/usr/bin/python3' failed with exit code 1 2022-07-05T10:24:51,221 error: subprocess-exited-with-error 2022-07-05T10:24:51,222 × python setup.py bdist_wheel did not run successfully. 2022-07-05T10:24:51,222 │ exit code: 1 2022-07-05T10:24:51,223 ╰─> See above for output. 2022-07-05T10:24:51,223 note: This error originates from a subprocess, and is likely not a problem with pip. 2022-07-05T10:24:51,233 full command: /usr/bin/python3 -u -c ' 2022-07-05T10:24:51,233 exec(compile('"'"''"'"''"'"' 2022-07-05T10:24:51,234 # This is -- a caller that pip uses to run setup.py 2022-07-05T10:24:51,234 # 2022-07-05T10:24:51,234 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-07-05T10:24:51,235 # import from `distutils.core` to work with newer packaging standards. 2022-07-05T10:24:51,235 # - It provides a clear error message when setuptools is not installed. 2022-07-05T10:24:51,235 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-07-05T10:24:51,236 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-07-05T10:24:51,236 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-07-05T10:24:51,236 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-07-05T10:24:51,237 import os, sys, tokenize 2022-07-05T10:24:51,237 try: 2022-07-05T10:24:51,237 import setuptools 2022-07-05T10:24:51,238 except ImportError as error: 2022-07-05T10:24:51,238 print( 2022-07-05T10:24:51,238 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-07-05T10:24:51,239 "the build environment.", 2022-07-05T10:24:51,239 file=sys.stderr, 2022-07-05T10:24:51,239 ) 2022-07-05T10:24:51,240 sys.exit(1) 2022-07-05T10:24:51,240 __file__ = %r 2022-07-05T10:24:51,240 sys.argv[0] = __file__ 2022-07-05T10:24:51,241 if os.path.exists(__file__): 2022-07-05T10:24:51,241 filename = __file__ 2022-07-05T10:24:51,242 with tokenize.open(__file__) as f: 2022-07-05T10:24:51,242 setup_py_code = f.read() 2022-07-05T10:24:51,242 else: 2022-07-05T10:24:51,242 filename = "" 2022-07-05T10:24:51,243 setup_py_code = "from setuptools import setup; setup()" 2022-07-05T10:24:51,243 exec(compile(setup_py_code, filename, "exec")) 2022-07-05T10:24:51,244 '"'"''"'"''"'"' % ('"'"'/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-8zp_x35h 2022-07-05T10:24:51,244 cwd: /tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ 2022-07-05T10:24:51,244 Building wheel for llvmlite (setup.py): finished with status 'error' 2022-07-05T10:24:51,245 ERROR: Failed building wheel for llvmlite 2022-07-05T10:24:51,245 Running setup.py clean for llvmlite 2022-07-05T10:24:51,245 Running command python setup.py clean 2022-07-05T10:24:56,781 running clean 2022-07-05T10:24:56,865 'build/lib.linux-armv7l-cpython-39' does not exist -- can't clean it 2022-07-05T10:24:56,868 'build/bdist.linux-armv7l' does not exist -- can't clean it 2022-07-05T10:24:56,870 'build/scripts-3.9' does not exist -- can't clean it 2022-07-05T10:24:56,873 removing '/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/__pycache__' (and everything under it) 2022-07-05T10:24:56,877 removing '/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/llvmlite/__pycache__' (and everything under it) 2022-07-05T10:24:57,090 Failed to build llvmlite 2022-07-05T10:25:07,758 Installing collected packages: texttable, stdlib-list, squarify, pytz, tqdm, threadpoolctl, six, setuptools, session-info, pyyaml, pyparsing, pillow, numpy, networkx, natsort, llvmlite, kiwisolver, joblib, igraph, fonttools, cycler, yamlordereddictloader, scipy, python-levenshtein, python-igraph, python-dateutil, patsy, parasail, packaging, numba, h5py, scikit-learn, pandas, matplotlib, statsmodels, seaborn, pynndescent, anndata, airr, adjustText, umap-learn, scanpy 2022-07-05T10:25:10,581 Creating /tmp/pip-build-env-g4qes8v7/normal/bin 2022-07-05T10:25:10,586 changing mode of /tmp/pip-build-env-g4qes8v7/normal/bin/tqdm to 755 2022-07-05T10:25:38,277 changing mode of /tmp/pip-build-env-g4qes8v7/normal/bin/f2py to 755 2022-07-05T10:25:38,282 changing mode of /tmp/pip-build-env-g4qes8v7/normal/bin/f2py3 to 755 2022-07-05T10:25:38,286 changing mode of /tmp/pip-build-env-g4qes8v7/normal/bin/f2py3.9 to 755 2022-07-05T10:25:50,367 changing mode of /tmp/pip-build-env-g4qes8v7/normal/bin/natsort to 755 2022-07-05T10:25:50,387 Running setup.py install for llvmlite: started 2022-07-05T10:25:50,388 Running command Running setup.py install for llvmlite 2022-07-05T10:25:56,158 running install 2022-07-05T10:25:56,160 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-07-05T10:25:56,161 warnings.warn( 2022-07-05T10:25:56,230 running build 2022-07-05T10:25:56,232 got version from file /tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/llvmlite/_version.py {'version': '0.38.1', 'full': '650c36d5a79e3825d26fb44f4abd853729a9b959'} 2022-07-05T10:25:56,234 running build_ext 2022-07-05T10:25:56,235 /usr/bin/python3 /tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ffi/build.py 2022-07-05T10:25:56,558 LLVM version... Traceback (most recent call last): 2022-07-05T10:25:56,560 File "/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ffi/build.py", line 220, in 2022-07-05T10:25:56,562 main() 2022-07-05T10:25:56,563 File "/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ffi/build.py", line 210, in main 2022-07-05T10:25:56,566 main_posix('linux', '.so') 2022-07-05T10:25:56,568 File "/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ffi/build.py", line 134, in main_posix 2022-07-05T10:25:56,570 raise RuntimeError(msg) from None 2022-07-05T10:25:56,572 RuntimeError: Could not find a `llvm-config` binary. There are a number of reasons this could occur, please see: https://llvmlite.readthedocs.io/en/latest/admin-guide/install.html#using-pip for help. 2022-07-05T10:25:56,605 error: command '/usr/bin/python3' failed with exit code 1 2022-07-05T10:25:56,858 error: subprocess-exited-with-error 2022-07-05T10:25:56,859 × Running setup.py install for llvmlite did not run successfully. 2022-07-05T10:25:56,859 │ exit code: 1 2022-07-05T10:25:56,859 ╰─> See above for output. 2022-07-05T10:25:56,860 note: This error originates from a subprocess, and is likely not a problem with pip. 2022-07-05T10:25:56,871 full command: /usr/bin/python3 -u -c ' 2022-07-05T10:25:56,871 exec(compile('"'"''"'"''"'"' 2022-07-05T10:25:56,872 # This is -- a caller that pip uses to run setup.py 2022-07-05T10:25:56,872 # 2022-07-05T10:25:56,872 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-07-05T10:25:56,873 # import from `distutils.core` to work with newer packaging standards. 2022-07-05T10:25:56,873 # - It provides a clear error message when setuptools is not installed. 2022-07-05T10:25:56,873 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-07-05T10:25:56,873 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-07-05T10:25:56,874 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-07-05T10:25:56,874 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-07-05T10:25:56,874 import os, sys, tokenize 2022-07-05T10:25:56,875 try: 2022-07-05T10:25:56,875 import setuptools 2022-07-05T10:25:56,875 except ImportError as error: 2022-07-05T10:25:56,876 print( 2022-07-05T10:25:56,876 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-07-05T10:25:56,876 "the build environment.", 2022-07-05T10:25:56,877 file=sys.stderr, 2022-07-05T10:25:56,877 ) 2022-07-05T10:25:56,878 sys.exit(1) 2022-07-05T10:25:56,878 __file__ = %r 2022-07-05T10:25:56,879 sys.argv[0] = __file__ 2022-07-05T10:25:56,879 if os.path.exists(__file__): 2022-07-05T10:25:56,880 filename = __file__ 2022-07-05T10:25:56,880 with tokenize.open(__file__) as f: 2022-07-05T10:25:56,880 setup_py_code = f.read() 2022-07-05T10:25:56,880 else: 2022-07-05T10:25:56,881 filename = "" 2022-07-05T10:25:56,881 setup_py_code = "from setuptools import setup; setup()" 2022-07-05T10:25:56,882 exec(compile(setup_py_code, filename, "exec")) 2022-07-05T10:25:56,882 '"'"''"'"''"'"' % ('"'"'/tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/setup.py'"'"',), "", "exec"))' install --record /tmp/pip-record-syyvu5ke/install-record.txt --single-version-externally-managed --prefix /tmp/pip-build-env-g4qes8v7/normal --compile --install-headers /tmp/pip-build-env-g4qes8v7/normal/include/python3.9/llvmlite 2022-07-05T10:25:56,882 cwd: /tmp/pip-install-xpmj_ucs/llvmlite_bca99bc00e9f4a91b5a7d6cf3437228b/ 2022-07-05T10:25:56,883 Running setup.py install for llvmlite: finished with status 'error' 2022-07-05T10:25:56,895 error: legacy-install-failure 2022-07-05T10:25:56,896 × Encountered error while trying to install package. 2022-07-05T10:25:56,896 ╰─> llvmlite 2022-07-05T10:25:56,896 note: This is an issue with the package mentioned above, not pip. 2022-07-05T10:25:56,897 hint: See above for output from the failure. 2022-07-05T10:25:58,629 ERROR: [present-rich] pip subprocess to install backend dependencies exited with 1 2022-07-05T10:25:58,670 [bold magenta]full command[/]: [blue]/usr/bin/python3 /tmp/pip-standalone-pip-1x_82ikg/__env_pip__.zip/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-g4qes8v7/normal --no-warn-script-location -v --no-binary scirpy --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'tqdm>=4.44.1' 'numpy>=1.17.0' 'anndata>=0.7.6' squarify 'networkx>=2.5' 'scanpy>=1.6.0' 'parasail != 1.2.1' python-igraph 'pandas>=1.0' scikit-learn python-levenshtein 'airr>=1.2' 'adjustText>=0.7' scipy 'numba>=0.41.0'[/] 2022-07-05T10:25:58,670 [bold magenta]cwd[/]: \[inherit] 2022-07-05T10:25:58,671 Installing backend dependencies: finished with status 'error' 2022-07-05T10:25:58,691 ERROR: [present-rich] pip subprocess to install backend dependencies exited with 1 2022-07-05T10:25:58,704 Exception information: 2022-07-05T10:25:58,704 Traceback (most recent call last): 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper 2022-07-05T10:25:58,704 status = run_func(*args) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2022-07-05T10:25:58,704 return func(self, options, args) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 145, in run 2022-07-05T10:25:58,704 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 94, in resolve 2022-07-05T10:25:58,704 result = self._result = resolver.resolve( 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2022-07-05T10:25:58,704 state = resolution.resolve(requirements, max_rounds=max_rounds) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2022-07-05T10:25:58,704 self._add_to_criteria(self.state.criteria, r, parent=None) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2022-07-05T10:25:58,704 if not criterion.candidates: 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2022-07-05T10:25:58,704 return bool(self._sequence) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2022-07-05T10:25:58,704 return any(self) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2022-07-05T10:25:58,704 return (c for c in iterator if id(c) not in self._incompatible_ids) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2022-07-05T10:25:58,704 candidate = func() 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 215, in _make_candidate_from_link 2022-07-05T10:25:58,704 self._link_candidate_cache[link] = LinkCandidate( 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 291, in __init__ 2022-07-05T10:25:58,704 super().__init__( 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 161, in __init__ 2022-07-05T10:25:58,704 self.dist = self._prepare() 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 230, in _prepare 2022-07-05T10:25:58,704 dist = self._prepare_distribution() 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 302, in _prepare_distribution 2022-07-05T10:25:58,704 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 428, in prepare_linked_requirement 2022-07-05T10:25:58,704 return self._prepare_linked_requirement(req, parallel_builds) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 497, in _prepare_linked_requirement 2022-07-05T10:25:58,704 dist = _get_prepared_distribution( 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 58, in _get_prepared_distribution 2022-07-05T10:25:58,704 abstract_dist.prepare_distribution_metadata( 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/distributions/sdist.py", line 48, in prepare_distribution_metadata 2022-07-05T10:25:58,704 self._install_build_reqs(finder) 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/distributions/sdist.py", line 122, in _install_build_reqs 2022-07-05T10:25:58,704 self.req.build_env.install_requirements( 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/build_env.py", line 210, in install_requirements 2022-07-05T10:25:58,704 self._install_requirements( 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/build_env.py", line 268, in _install_requirements 2022-07-05T10:25:58,704 call_subprocess( 2022-07-05T10:25:58,704 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2022-07-05T10:25:58,704 raise error 2022-07-05T10:25:58,704 pip._internal.exceptions.InstallationSubprocessError: pip subprocess to install backend dependencies exited with 1 2022-07-05T10:25:58,731 Removed scirpy==0.11.0 from https://files.pythonhosted.org/packages/c8/57/775aab2598fdce44dc61b229caebaa27c947248e7ba8e94a0efa23864915/scirpy-0.11.0.tar.gz#sha256=48f3bfb22709c171b6fc3280b4106a3749542f2b4501fd16046f5ce20b99c4ee from build tracker '/tmp/pip-build-tracker-5wvieh0a' 2022-07-05T10:25:58,732 Removed build tracker: '/tmp/pip-build-tracker-5wvieh0a'