2022-07-08T10:45:32,641 Created temporary directory: /tmp/pip-ephem-wheel-cache-kv1i0eo7 2022-07-08T10:45:32,647 Created temporary directory: /tmp/pip-build-tracker-x3rzc3f_ 2022-07-08T10:45:32,647 Initialized build tracking at /tmp/pip-build-tracker-x3rzc3f_ 2022-07-08T10:45:32,648 Created build tracker: /tmp/pip-build-tracker-x3rzc3f_ 2022-07-08T10:45:32,648 Entered build tracker: /tmp/pip-build-tracker-x3rzc3f_ 2022-07-08T10:45:32,649 Created temporary directory: /tmp/pip-wheel-dqlhbl5v 2022-07-08T10:45:32,718 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-08T10:45:32,727 2 location(s) to search for versions of clearcnv: 2022-07-08T10:45:32,727 * https://pypi.org/simple/clearcnv/ 2022-07-08T10:45:32,727 * https://www.piwheels.org/simple/clearcnv/ 2022-07-08T10:45:32,728 Fetching project page and analyzing links: https://pypi.org/simple/clearcnv/ 2022-07-08T10:45:32,729 Getting page https://pypi.org/simple/clearcnv/ 2022-07-08T10:45:32,732 Found index url https://pypi.org/simple 2022-07-08T10:45:32,922 Found link https://files.pythonhosted.org/packages/9e/56/2bd290685ae8b425115d75335e1d227330c4028ba6914a325e2963a4dc0f/clearCNV-0.303.tar.gz#sha256=df5bb11cec7f1609ac6c82710262c9201cc1f4c59de046f6340e6e00aa67e3ec (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.303 2022-07-08T10:45:32,923 Found link https://files.pythonhosted.org/packages/8d/5e/f012a8083dacf2c6a3f87fc83e17f838151d9c33ecaa83ab9df420f87123/clearCNV-0.304.tar.gz#sha256=4e9096332b940fec1478940b43e335ca100f27bc11535277742358c17b2f35ec (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.304 2022-07-08T10:45:32,925 Found link https://files.pythonhosted.org/packages/3f/ab/7fee647f1845616dff4d54d29623440dbbfc994b7fd4d6e220100bbae742/clearCNV-0.305.tar.gz#sha256=8c1605c5af30c5af59ba41029d8351341051fd9e8a63c3b2f3be8dd4a08bf57a (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.305 2022-07-08T10:45:32,925 Skipping link: No binaries permitted for clearcnv: https://files.pythonhosted.org/packages/c6/af/81c81156747739493088d2e4b7f83bb6638a1795814ebe6b22e06f248ed9/clearCNV-0.306-py2.py3-none-any.whl#sha256=456e98e699cefe2ffc847c08bf784d1a25ee1b46064cc976f77a05ea99388994 (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7) 2022-07-08T10:45:32,927 Found link https://files.pythonhosted.org/packages/8b/2e/1944b2d45404dba382047e6e1c5550bed01176559a463432607d46a4117f/clearCNV-0.306.tar.gz#sha256=ad9fa46b6b09f2286455d912820aef074929cc4f99cf93a510937f38d41e45a3 (from https://pypi.org/simple/clearcnv/) (requires-python:>=3.7), version: 0.306 2022-07-08T10:45:32,928 Fetching project page and analyzing links: https://www.piwheels.org/simple/clearcnv/ 2022-07-08T10:45:32,928 Getting page https://www.piwheels.org/simple/clearcnv/ 2022-07-08T10:45:32,930 Found index url https://www.piwheels.org/simple 2022-07-08T10:45:33,141 Skipping link: No binaries permitted for clearcnv: https://www.piwheels.org/simple/clearcnv/clearCNV-0.305-py2.py3-none-any.whl#sha256=40106d0345be35c62030317ed44d8eed5d1e5d4f520848c46e78b8ffc337da66 (from https://www.piwheels.org/simple/clearcnv/) (requires-python:>=3.7) 2022-07-08T10:45:33,142 Skipping link: No binaries permitted for clearcnv: https://www.piwheels.org/simple/clearcnv/clearCNV-0.304-py2.py3-none-any.whl#sha256=1238674b82c2d9b28ae7dc7bec816402bb8a3e33fd1c6217088c67caf7a0593f (from https://www.piwheels.org/simple/clearcnv/) (requires-python:>=3.7) 2022-07-08T10:45:33,142 Skipping link: No binaries permitted for clearcnv: https://www.piwheels.org/simple/clearcnv/clearCNV-0.303-py2.py3-none-any.whl#sha256=d7403657554d9d98e0cd60f6fdafe886551a3dfb6d04d99057bfb47166164b7f (from https://www.piwheels.org/simple/clearcnv/) (requires-python:>=3.7) 2022-07-08T10:45:33,143 Skipping link: not a file: https://www.piwheels.org/simple/clearcnv/ 2022-07-08T10:45:33,143 Skipping link: not a file: https://pypi.org/simple/clearcnv/ 2022-07-08T10:45:33,177 Given no hashes to check 1 links for project 'clearcnv': discarding no candidates 2022-07-08T10:45:33,209 Collecting clearcnv==0.306 2022-07-08T10:45:33,213 Created temporary directory: /tmp/pip-unpack-sf3pnjut 2022-07-08T10:45:33,308 Downloading clearCNV-0.306.tar.gz (1.8 MB) 2022-07-08T10:45:34,663 Added clearcnv==0.306 from https://files.pythonhosted.org/packages/8b/2e/1944b2d45404dba382047e6e1c5550bed01176559a463432607d46a4117f/clearCNV-0.306.tar.gz#sha256=ad9fa46b6b09f2286455d912820aef074929cc4f99cf93a510937f38d41e45a3 to build tracker '/tmp/pip-build-tracker-x3rzc3f_' 2022-07-08T10:45:34,667 Running setup.py (path:/tmp/pip-wheel-dqlhbl5v/clearcnv_889494a5a37e42aaaccad85414f72cce/setup.py) egg_info for package clearcnv 2022-07-08T10:45:34,668 Created temporary directory: /tmp/pip-pip-egg-info-8bo_4t7z 2022-07-08T10:45:34,669 Preparing metadata (setup.py): started 2022-07-08T10:45:34,671 Running command python setup.py egg_info 2022-07-08T10:45:43,823 running egg_info 2022-07-08T10:45:43,828 creating /tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info 2022-07-08T10:45:44,472 writing /tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info/PKG-INFO 2022-07-08T10:45:45,071 writing dependency_links to /tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info/dependency_links.txt 2022-07-08T10:45:46,859 writing entry points to /tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info/entry_points.txt 2022-07-08T10:45:48,049 writing requirements to /tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info/requires.txt 2022-07-08T10:45:48,649 writing top-level names to /tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info/top_level.txt 2022-07-08T10:45:48,651 writing manifest file '/tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info/SOURCES.txt' 2022-07-08T10:45:48,772 reading manifest file '/tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info/SOURCES.txt' 2022-07-08T10:45:48,775 reading manifest template 'MANIFEST.in' 2022-07-08T10:45:48,776 warning: no files found matching 'AUTHORS.rst' 2022-07-08T10:45:48,777 warning: no files found matching 'CONTRIBUTING.rst' 2022-07-08T10:45:48,830 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-07-08T10:45:48,832 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-07-08T10:45:48,833 warning: no previously-included files matching '*.sh' found under directory '*' 2022-07-08T10:45:48,834 warning: no files found matching '*.rst' under directory 'docs' 2022-07-08T10:45:48,835 warning: no files found matching 'conf.py' under directory 'docs' 2022-07-08T10:45:48,835 warning: no files found matching 'Makefile' under directory 'docs' 2022-07-08T10:45:48,836 warning: no files found matching 'make.bat' under directory 'docs' 2022-07-08T10:45:48,836 warning: no files found matching '*.jpg' under directory 'docs' 2022-07-08T10:45:48,836 warning: no files found matching '*.png' under directory 'docs' 2022-07-08T10:45:48,837 warning: no files found matching '*.gif' under directory 'docs' 2022-07-08T10:45:48,874 warning: no files found matching '*.js' under directory 'clearCNV/viz_reassignment/assets' 2022-07-08T10:45:48,891 warning: no files found matching '*.png' under directory 'clearCNV/viz_reassignment/assets' 2022-07-08T10:45:48,979 warning: no files found matching '*.md' under directory 'clearCNV/viz_reassignment/static' 2022-07-08T10:45:48,999 adding license file 'LICENSE' 2022-07-08T10:45:49,012 writing manifest file '/tmp/pip-pip-egg-info-8bo_4t7z/clearCNV.egg-info/SOURCES.txt' 2022-07-08T10:45:49,234 Preparing metadata (setup.py): finished with status 'done' 2022-07-08T10:45:49,246 Source in /tmp/pip-wheel-dqlhbl5v/clearcnv_889494a5a37e42aaaccad85414f72cce has version 0.306, which satisfies requirement clearcnv==0.306 from https://files.pythonhosted.org/packages/8b/2e/1944b2d45404dba382047e6e1c5550bed01176559a463432607d46a4117f/clearCNV-0.306.tar.gz#sha256=ad9fa46b6b09f2286455d912820aef074929cc4f99cf93a510937f38d41e45a3 2022-07-08T10:45:49,248 Removed clearcnv==0.306 from https://files.pythonhosted.org/packages/8b/2e/1944b2d45404dba382047e6e1c5550bed01176559a463432607d46a4117f/clearCNV-0.306.tar.gz#sha256=ad9fa46b6b09f2286455d912820aef074929cc4f99cf93a510937f38d41e45a3 from build tracker '/tmp/pip-build-tracker-x3rzc3f_' 2022-07-08T10:45:49,262 Created temporary directory: /tmp/pip-unpack-xcuu1z6q 2022-07-08T10:45:49,264 Building wheels for collected packages: clearcnv 2022-07-08T10:45:49,273 Created temporary directory: /tmp/pip-wheel-e_fwqm6o 2022-07-08T10:45:49,274 Building wheel for clearcnv (setup.py): started 2022-07-08T10:45:49,276 Destination directory: /tmp/pip-wheel-e_fwqm6o 2022-07-08T10:45:49,276 Running command python setup.py bdist_wheel 2022-07-08T10:45:57,436 running bdist_wheel 2022-07-08T10:45:57,602 running build 2022-07-08T10:45:57,603 running build_py 2022-07-08T10:45:57,618 creating build 2022-07-08T10:45:57,619 creating build/lib 2022-07-08T10:45:57,621 creating build/lib/clearCNV 2022-07-08T10:45:57,623 copying clearCNV/__init__.py -> build/lib/clearCNV 2022-07-08T10:45:57,627 copying clearCNV/cnv_arithmetics.py -> build/lib/clearCNV 2022-07-08T10:45:57,632 copying clearCNV/misc.py -> build/lib/clearCNV 2022-07-08T10:45:57,637 copying clearCNV/_version.py -> build/lib/clearCNV 2022-07-08T10:45:57,644 copying clearCNV/visualize_scores.py -> build/lib/clearCNV 2022-07-08T10:45:57,648 copying clearCNV/workflow_cnv_calling.py -> build/lib/clearCNV 2022-07-08T10:45:57,652 copying clearCNV/workflow_reassignment.py -> build/lib/clearCNV 2022-07-08T10:45:57,656 copying clearCNV/__main__.py -> build/lib/clearCNV 2022-07-08T10:45:57,662 copying clearCNV/matchscores.py -> build/lib/clearCNV 2022-07-08T10:45:57,666 copying clearCNV/cnv_calling.py -> build/lib/clearCNV 2022-07-08T10:45:57,671 copying clearCNV/util.py -> build/lib/clearCNV 2022-07-08T10:45:57,677 creating build/lib/tests 2022-07-08T10:45:57,679 copying tests/test_misc.py -> build/lib/tests 2022-07-08T10:45:57,683 copying tests/__init__.py -> build/lib/tests 2022-07-08T10:45:57,688 creating build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,690 copying clearCNV/viz_reassignment/settings.py -> build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,694 copying clearCNV/viz_reassignment/ui.py -> build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,699 copying clearCNV/viz_reassignment/__init__.py -> build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,702 copying clearCNV/viz_reassignment/store.py -> build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,707 copying clearCNV/viz_reassignment/ui_plots.py -> build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,711 copying clearCNV/viz_reassignment/callbacks.py -> build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,715 copying clearCNV/viz_reassignment/app.py -> build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,718 copying clearCNV/viz_reassignment/cache.py -> build/lib/clearCNV/viz_reassignment 2022-07-08T10:45:57,721 running egg_info 2022-07-08T10:45:59,027 writing clearCNV.egg-info/PKG-INFO 2022-07-08T10:45:59,637 writing dependency_links to clearCNV.egg-info/dependency_links.txt 2022-07-08T10:46:01,431 writing entry points to clearCNV.egg-info/entry_points.txt 2022-07-08T10:46:02,626 writing requirements to clearCNV.egg-info/requires.txt 2022-07-08T10:46:03,225 writing top-level names to clearCNV.egg-info/top_level.txt 2022-07-08T10:46:03,286 reading manifest file 'clearCNV.egg-info/SOURCES.txt' 2022-07-08T10:46:03,316 reading manifest template 'MANIFEST.in' 2022-07-08T10:46:03,317 warning: no files found matching 'AUTHORS.rst' 2022-07-08T10:46:03,318 warning: no files found matching 'CONTRIBUTING.rst' 2022-07-08T10:46:03,363 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-07-08T10:46:03,366 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-07-08T10:46:03,368 warning: no previously-included files matching '*.sh' found under directory '*' 2022-07-08T10:46:03,369 warning: no files found matching '*.rst' under directory 'docs' 2022-07-08T10:46:03,369 warning: no files found matching 'conf.py' under directory 'docs' 2022-07-08T10:46:03,369 warning: no files found matching 'Makefile' under directory 'docs' 2022-07-08T10:46:03,370 warning: no files found matching 'make.bat' under directory 'docs' 2022-07-08T10:46:03,370 warning: no files found matching '*.jpg' under directory 'docs' 2022-07-08T10:46:03,370 warning: no files found matching '*.png' under directory 'docs' 2022-07-08T10:46:03,371 warning: no files found matching '*.gif' under directory 'docs' 2022-07-08T10:46:03,404 warning: no files found matching '*.js' under directory 'clearCNV/viz_reassignment/assets' 2022-07-08T10:46:03,421 warning: no files found matching '*.png' under directory 'clearCNV/viz_reassignment/assets' 2022-07-08T10:46:03,508 warning: no files found matching '*.md' under directory 'clearCNV/viz_reassignment/static' 2022-07-08T10:46:03,527 adding license file 'LICENSE' 2022-07-08T10:46:03,544 writing manifest file 'clearCNV.egg-info/SOURCES.txt' 2022-07-08T10:46:03,549 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-08T10:46:03,550 ############################ 2022-07-08T10:46:03,550 # Package would be ignored # 2022-07-08T10:46:03,551 ############################ 2022-07-08T10:46:03,551 Python recognizes 'clearCNV.viz_reassignment.assets' as an importable package, however it is 2022-07-08T10:46:03,551 included in the distribution as "data". 2022-07-08T10:46:03,552 This behavior is likely to change in future versions of setuptools (and 2022-07-08T10:46:03,552 therefore is considered deprecated). 2022-07-08T10:46:03,553 Please make sure that 'clearCNV.viz_reassignment.assets' is included as a package by using 2022-07-08T10:46:03,553 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-08T10:46:03,553 You can read more about "package discovery" and "data files" on setuptools 2022-07-08T10:46:03,554 documentation page. 2022-07-08T10:46:03,555 !! 2022-07-08T10:46:03,555 check.warn(importable) 2022-07-08T10:46:03,556 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-08T10:46:03,557 ############################ 2022-07-08T10:46:03,557 # Package would be ignored # 2022-07-08T10:46:03,557 ############################ 2022-07-08T10:46:03,557 Python recognizes 'clearCNV.viz_reassignment.assets.fontawesome.css' as an importable package, however it is 2022-07-08T10:46:03,558 included in the distribution as "data". 2022-07-08T10:46:03,558 This behavior is likely to change in future versions of setuptools (and 2022-07-08T10:46:03,558 therefore is considered deprecated). 2022-07-08T10:46:03,559 Please make sure that 'clearCNV.viz_reassignment.assets.fontawesome.css' is included as a package by using 2022-07-08T10:46:03,559 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-08T10:46:03,560 You can read more about "package discovery" and "data files" on setuptools 2022-07-08T10:46:03,560 documentation page. 2022-07-08T10:46:03,561 !! 2022-07-08T10:46:03,561 check.warn(importable) 2022-07-08T10:46:03,562 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-08T10:46:03,563 ############################ 2022-07-08T10:46:03,563 # Package would be ignored # 2022-07-08T10:46:03,563 ############################ 2022-07-08T10:46:03,563 Python recognizes 'clearCNV.viz_reassignment.assets.fontawesome.webfonts' as an importable package, however it is 2022-07-08T10:46:03,564 included in the distribution as "data". 2022-07-08T10:46:03,564 This behavior is likely to change in future versions of setuptools (and 2022-07-08T10:46:03,564 therefore is considered deprecated). 2022-07-08T10:46:03,565 Please make sure that 'clearCNV.viz_reassignment.assets.fontawesome.webfonts' is included as a package by using 2022-07-08T10:46:03,565 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-08T10:46:03,566 You can read more about "package discovery" and "data files" on setuptools 2022-07-08T10:46:03,566 documentation page. 2022-07-08T10:46:03,567 !! 2022-07-08T10:46:03,568 check.warn(importable) 2022-07-08T10:46:03,568 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-08T10:46:03,569 ############################ 2022-07-08T10:46:03,569 # Package would be ignored # 2022-07-08T10:46:03,569 ############################ 2022-07-08T10:46:03,570 Python recognizes 'clearCNV.workflow' as an importable package, however it is 2022-07-08T10:46:03,570 included in the distribution as "data". 2022-07-08T10:46:03,570 This behavior is likely to change in future versions of setuptools (and 2022-07-08T10:46:03,570 therefore is considered deprecated). 2022-07-08T10:46:03,571 Please make sure that 'clearCNV.workflow' is included as a package by using 2022-07-08T10:46:03,571 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-08T10:46:03,572 You can read more about "package discovery" and "data files" on setuptools 2022-07-08T10:46:03,572 documentation page. 2022-07-08T10:46:03,573 !! 2022-07-08T10:46:03,573 check.warn(importable) 2022-07-08T10:46:03,574 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-08T10:46:03,575 ############################ 2022-07-08T10:46:03,575 # Package would be ignored # 2022-07-08T10:46:03,575 ############################ 2022-07-08T10:46:03,576 Python recognizes 'tests.testdata' as an importable package, however it is 2022-07-08T10:46:03,576 included in the distribution as "data". 2022-07-08T10:46:03,576 This behavior is likely to change in future versions of setuptools (and 2022-07-08T10:46:03,576 therefore is considered deprecated). 2022-07-08T10:46:03,577 Please make sure that 'tests.testdata' is included as a package by using 2022-07-08T10:46:03,577 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-08T10:46:03,578 You can read more about "package discovery" and "data files" on setuptools 2022-07-08T10:46:03,578 documentation page. 2022-07-08T10:46:03,579 !! 2022-07-08T10:46:03,580 check.warn(importable) 2022-07-08T10:46:03,580 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: !! 2022-07-08T10:46:03,581 ############################ 2022-07-08T10:46:03,581 # Package would be ignored # 2022-07-08T10:46:03,582 ############################ 2022-07-08T10:46:03,582 Python recognizes 'tests.testdata.covs' as an importable package, however it is 2022-07-08T10:46:03,583 included in the distribution as "data". 2022-07-08T10:46:03,583 This behavior is likely to change in future versions of setuptools (and 2022-07-08T10:46:03,584 therefore is considered deprecated). 2022-07-08T10:46:03,584 Please make sure that 'tests.testdata.covs' is included as a package by using 2022-07-08T10:46:03,585 setuptools' `packages` configuration field or the proper discovery methods. 2022-07-08T10:46:03,585 You can read more about "package discovery" and "data files" on setuptools 2022-07-08T10:46:03,586 documentation page. 2022-07-08T10:46:03,587 !! 2022-07-08T10:46:03,588 check.warn(importable) 2022-07-08T10:46:03,588 creating build/lib/clearCNV/workflow 2022-07-08T10:46:03,588 copying clearCNV/workflow/Snakefile_cnv_calling -> build/lib/clearCNV/workflow 2022-07-08T10:46:03,589 copying clearCNV/workflow/Snakefile_reassignment -> build/lib/clearCNV/workflow 2022-07-08T10:46:03,590 copying clearCNV/workflow/bih_cluster.json -> build/lib/clearCNV/workflow 2022-07-08T10:46:03,593 copying clearCNV/workflow/config_cnv_calling.yml -> build/lib/clearCNV/workflow 2022-07-08T10:46:03,597 copying clearCNV/workflow/config_reassignment.yml -> build/lib/clearCNV/workflow 2022-07-08T10:46:03,601 creating build/lib/tests/testdata 2022-07-08T10:46:03,602 copying tests/testdata/GC_annotations.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,607 copying tests/testdata/allbams.txt -> build/lib/tests/testdata 2022-07-08T10:46:03,610 copying tests/testdata/allmerged.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,614 copying tests/testdata/annotations.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,617 copying tests/testdata/annotations2.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,621 copying tests/testdata/bamfiles.txt -> build/lib/tests/testdata 2022-07-08T10:46:03,625 copying tests/testdata/bedfile.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,629 copying tests/testdata/bedfile_alt.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,633 copying tests/testdata/cov.tsv -> build/lib/tests/testdata 2022-07-08T10:46:03,637 copying tests/testdata/cov_reassignment.tsv -> build/lib/tests/testdata 2022-07-08T10:46:03,674 copying tests/testdata/coverages.tsv -> build/lib/tests/testdata 2022-07-08T10:46:03,678 copying tests/testdata/mappability.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,682 copying tests/testdata/mappability.eq.1.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,685 copying tests/testdata/matchscores.tsv -> build/lib/tests/testdata 2022-07-08T10:46:03,690 copying tests/testdata/merged.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,694 copying tests/testdata/meta.tsv -> build/lib/tests/testdata 2022-07-08T10:46:03,697 copying tests/testdata/panel1.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,702 copying tests/testdata/panel2.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,708 copying tests/testdata/reassignment_p1_bamfiles.txt -> build/lib/tests/testdata 2022-07-08T10:46:03,711 copying tests/testdata/reassignment_p2_bamfiles.txt -> build/lib/tests/testdata 2022-07-08T10:46:03,715 copying tests/testdata/reassignment_union.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,720 copying tests/testdata/reference.fa -> build/lib/tests/testdata 2022-07-08T10:46:03,725 copying tests/testdata/reference.fa.fai -> build/lib/tests/testdata 2022-07-08T10:46:03,728 copying tests/testdata/sample01.rtbed -> build/lib/tests/testdata 2022-07-08T10:46:03,732 copying tests/testdata/sample02.rtbed -> build/lib/tests/testdata 2022-07-08T10:46:03,736 copying tests/testdata/sample03.rtbed -> build/lib/tests/testdata 2022-07-08T10:46:03,739 copying tests/testdata/small.bam -> build/lib/tests/testdata 2022-07-08T10:46:03,747 copying tests/testdata/small.bam.bai -> build/lib/tests/testdata 2022-07-08T10:46:03,754 copying tests/testdata/small.rtbed -> build/lib/tests/testdata 2022-07-08T10:46:03,758 copying tests/testdata/targets.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,762 copying tests/testdata/test_merge_bed_input.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,765 copying tests/testdata/test_merge_bed_output.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,769 copying tests/testdata/test_merge_beds_input_0.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,772 copying tests/testdata/test_merge_beds_input_1.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,776 copying tests/testdata/test_merge_beds_output.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,779 copying tests/testdata/test_reassign_meta.tsv -> build/lib/tests/testdata 2022-07-08T10:46:03,783 copying tests/testdata/test_reassign_panel0.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,786 copying tests/testdata/test_reassign_panel1.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,790 copying tests/testdata/test_reassign_small_0.bam -> build/lib/tests/testdata 2022-07-08T10:46:03,797 copying tests/testdata/test_reassign_small_0.bam.bai -> build/lib/tests/testdata 2022-07-08T10:46:03,805 copying tests/testdata/test_reassign_small_1.bam -> build/lib/tests/testdata 2022-07-08T10:46:03,813 copying tests/testdata/test_reassign_small_1.bam.bai -> build/lib/tests/testdata 2022-07-08T10:46:03,821 copying tests/testdata/test_reassignment_coverages.tsv -> build/lib/tests/testdata 2022-07-08T10:46:03,825 copying tests/testdata/test_reassignment_p1_bamfiles.txt -> build/lib/tests/testdata 2022-07-08T10:46:03,828 copying tests/testdata/test_reassignment_p2_bamfiles.txt -> build/lib/tests/testdata 2022-07-08T10:46:03,832 copying tests/testdata/test_reassignment_ref.fa -> build/lib/tests/testdata 2022-07-08T10:46:03,837 copying tests/testdata/test_reassignment_ref.fa.fai -> build/lib/tests/testdata 2022-07-08T10:46:03,840 copying tests/testdata/test_reassignment_union.bed -> build/lib/tests/testdata 2022-07-08T10:46:03,843 creating build/lib/tests/testdata/covs 2022-07-08T10:46:03,845 copying tests/testdata/covs/test_reassign_small_0.rtbed -> build/lib/tests/testdata/covs 2022-07-08T10:46:03,849 copying tests/testdata/covs/test_reassign_small_1.rtbed -> build/lib/tests/testdata/covs 2022-07-08T10:46:03,852 creating build/lib/clearCNV/viz_reassignment/assets 2022-07-08T10:46:03,854 copying clearCNV/viz_reassignment/assets/bootstrap.min.css -> build/lib/clearCNV/viz_reassignment/assets 2022-07-08T10:46:03,866 copying clearCNV/viz_reassignment/assets/clear-cnv.css -> build/lib/clearCNV/viz_reassignment/assets 2022-07-08T10:46:03,870 creating build/lib/clearCNV/viz_reassignment/assets/fontawesome 2022-07-08T10:46:03,871 creating build/lib/clearCNV/viz_reassignment/assets/fontawesome/css 2022-07-08T10:46:03,872 copying clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/css 2022-07-08T10:46:03,880 creating build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,881 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,893 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,929 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,941 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,950 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,960 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,967 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,981 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,989 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,995 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:03,999 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:04,017 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:04,065 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:04,078 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:04,088 copying clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2 -> build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:04,102 UPDATING build/lib/clearCNV/_version.py 2022-07-08T10:46:04,105 set build/lib/clearCNV/_version.py to '0.306' 2022-07-08T10:46:04,762 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-07-08T10:46:04,762 setuptools.SetuptoolsDeprecationWarning, 2022-07-08T10:46:05,469 installing to build/bdist.linux-armv7l/wheel 2022-07-08T10:46:05,470 running install 2022-07-08T10:46:05,532 running install_lib 2022-07-08T10:46:06,178 creating build/bdist.linux-armv7l 2022-07-08T10:46:06,179 creating build/bdist.linux-armv7l/wheel 2022-07-08T10:46:06,183 creating build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,185 copying build/lib/clearCNV/__init__.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,191 creating build/bdist.linux-armv7l/wheel/clearCNV/workflow 2022-07-08T10:46:06,192 copying build/lib/clearCNV/workflow/config_cnv_calling.yml -> build/bdist.linux-armv7l/wheel/clearCNV/workflow 2022-07-08T10:46:06,197 copying build/lib/clearCNV/workflow/Snakefile_cnv_calling -> build/bdist.linux-armv7l/wheel/clearCNV/workflow 2022-07-08T10:46:06,202 copying build/lib/clearCNV/workflow/config_reassignment.yml -> build/bdist.linux-armv7l/wheel/clearCNV/workflow 2022-07-08T10:46:06,206 copying build/lib/clearCNV/workflow/Snakefile_reassignment -> build/bdist.linux-armv7l/wheel/clearCNV/workflow 2022-07-08T10:46:06,210 copying build/lib/clearCNV/workflow/bih_cluster.json -> build/bdist.linux-armv7l/wheel/clearCNV/workflow 2022-07-08T10:46:06,214 copying build/lib/clearCNV/cnv_arithmetics.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,219 copying build/lib/clearCNV/misc.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,223 copying build/lib/clearCNV/_version.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,227 copying build/lib/clearCNV/visualize_scores.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,233 creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,235 copying build/lib/clearCNV/viz_reassignment/settings.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,239 copying build/lib/clearCNV/viz_reassignment/ui.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,244 copying build/lib/clearCNV/viz_reassignment/__init__.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,247 copying build/lib/clearCNV/viz_reassignment/store.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,252 copying build/lib/clearCNV/viz_reassignment/ui_plots.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,256 copying build/lib/clearCNV/viz_reassignment/callbacks.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,260 copying build/lib/clearCNV/viz_reassignment/app.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,264 copying build/lib/clearCNV/viz_reassignment/cache.py -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment 2022-07-08T10:46:06,269 creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets 2022-07-08T10:46:06,271 copying build/lib/clearCNV/viz_reassignment/assets/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets 2022-07-08T10:46:06,284 creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome 2022-07-08T10:46:06,288 creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,290 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,300 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,310 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,316 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,322 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,330 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,375 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,385 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,390 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,400 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2 -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,409 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,425 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,439 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,445 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,486 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/webfonts 2022-07-08T10:46:06,497 creating build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/css 2022-07-08T10:46:06,499 copying build/lib/clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets/fontawesome/css 2022-07-08T10:46:06,506 copying build/lib/clearCNV/viz_reassignment/assets/clear-cnv.css -> build/bdist.linux-armv7l/wheel/clearCNV/viz_reassignment/assets 2022-07-08T10:46:06,509 copying build/lib/clearCNV/workflow_cnv_calling.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,512 copying build/lib/clearCNV/workflow_reassignment.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,516 copying build/lib/clearCNV/__main__.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,522 copying build/lib/clearCNV/matchscores.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,526 copying build/lib/clearCNV/cnv_calling.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,531 copying build/lib/clearCNV/util.py -> build/bdist.linux-armv7l/wheel/clearCNV 2022-07-08T10:46:06,537 creating build/bdist.linux-armv7l/wheel/tests 2022-07-08T10:46:06,538 copying build/lib/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/tests 2022-07-08T10:46:06,542 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2022-07-08T10:46:06,547 creating build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,548 copying build/lib/tests/testdata/mappability.eq.1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,551 copying build/lib/tests/testdata/allbams.txt -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,554 copying build/lib/tests/testdata/meta.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,558 copying build/lib/tests/testdata/GC_annotations.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,561 copying build/lib/tests/testdata/test_merge_beds_input_0.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,565 copying build/lib/tests/testdata/coverages.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,570 copying build/lib/tests/testdata/test_reassign_small_1.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,577 copying build/lib/tests/testdata/sample03.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,580 copying build/lib/tests/testdata/reference.fa -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,584 copying build/lib/tests/testdata/annotations2.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,587 copying build/lib/tests/testdata/reassignment_p1_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,590 copying build/lib/tests/testdata/test_reassign_panel1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,594 copying build/lib/tests/testdata/cov_reassignment.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,634 copying build/lib/tests/testdata/sample02.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,637 copying build/lib/tests/testdata/test_merge_bed_input.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,641 creating build/bdist.linux-armv7l/wheel/tests/testdata/covs 2022-07-08T10:46:06,642 copying build/lib/tests/testdata/covs/test_reassign_small_1.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata/covs 2022-07-08T10:46:06,646 copying build/lib/tests/testdata/covs/test_reassign_small_0.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata/covs 2022-07-08T10:46:06,649 copying build/lib/tests/testdata/test_reassignment_p2_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,652 copying build/lib/tests/testdata/test_reassign_small_1.bam -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,660 copying build/lib/tests/testdata/reassignment_union.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,664 copying build/lib/tests/testdata/annotations.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,668 copying build/lib/tests/testdata/test_reassign_meta.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,671 copying build/lib/tests/testdata/small.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,674 copying build/lib/tests/testdata/reassignment_p2_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,677 copying build/lib/tests/testdata/test_reassignment_p1_bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,680 copying build/lib/tests/testdata/test_merge_bed_output.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,683 copying build/lib/tests/testdata/panel2.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,688 copying build/lib/tests/testdata/test_reassign_small_0.bam -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,696 copying build/lib/tests/testdata/reference.fa.fai -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,699 copying build/lib/tests/testdata/cov.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,703 copying build/lib/tests/testdata/test_reassign_small_0.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,711 copying build/lib/tests/testdata/test_reassignment_ref.fa.fai -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,714 copying build/lib/tests/testdata/bedfile.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,717 copying build/lib/tests/testdata/bamfiles.txt -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,720 copying build/lib/tests/testdata/test_reassignment_ref.fa -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,724 copying build/lib/tests/testdata/panel1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,728 copying build/lib/tests/testdata/targets.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,731 copying build/lib/tests/testdata/small.bam.bai -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,739 copying build/lib/tests/testdata/test_reassign_panel0.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,742 copying build/lib/tests/testdata/test_merge_beds_input_1.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,745 copying build/lib/tests/testdata/bedfile_alt.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,748 copying build/lib/tests/testdata/sample01.rtbed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,751 copying build/lib/tests/testdata/mappability.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,754 copying build/lib/tests/testdata/merged.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,757 copying build/lib/tests/testdata/test_reassignment_union.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,760 copying build/lib/tests/testdata/small.bam -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,767 copying build/lib/tests/testdata/allmerged.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,770 copying build/lib/tests/testdata/test_merge_beds_output.bed -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,773 copying build/lib/tests/testdata/matchscores.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,777 copying build/lib/tests/testdata/test_reassignment_coverages.tsv -> build/bdist.linux-armv7l/wheel/tests/testdata 2022-07-08T10:46:06,779 running install_egg_info 2022-07-08T10:46:07,441 Copying clearCNV.egg-info to build/bdist.linux-armv7l/wheel/clearCNV-0.306-py3.7.egg-info 2022-07-08T10:46:07,468 running install_scripts 2022-07-08T10:46:07,671 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-07-08T10:46:07,680 creating build/bdist.linux-armv7l/wheel/clearCNV-0.306.dist-info/WHEEL 2022-07-08T10:46:07,685 creating '/tmp/pip-wheel-e_fwqm6o/clearCNV-0.306-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-07-08T10:46:07,689 adding 'clearCNV/__init__.py' 2022-07-08T10:46:07,695 adding 'clearCNV/__main__.py' 2022-07-08T10:46:07,698 adding 'clearCNV/_version.py' 2022-07-08T10:46:07,702 adding 'clearCNV/cnv_arithmetics.py' 2022-07-08T10:46:07,707 adding 'clearCNV/cnv_calling.py' 2022-07-08T10:46:07,709 adding 'clearCNV/matchscores.py' 2022-07-08T10:46:07,712 adding 'clearCNV/misc.py' 2022-07-08T10:46:07,717 adding 'clearCNV/util.py' 2022-07-08T10:46:07,720 adding 'clearCNV/visualize_scores.py' 2022-07-08T10:46:07,722 adding 'clearCNV/workflow_cnv_calling.py' 2022-07-08T10:46:07,725 adding 'clearCNV/workflow_reassignment.py' 2022-07-08T10:46:07,728 adding 'clearCNV/viz_reassignment/__init__.py' 2022-07-08T10:46:07,730 adding 'clearCNV/viz_reassignment/app.py' 2022-07-08T10:46:07,733 adding 'clearCNV/viz_reassignment/cache.py' 2022-07-08T10:46:07,735 adding 'clearCNV/viz_reassignment/callbacks.py' 2022-07-08T10:46:07,738 adding 'clearCNV/viz_reassignment/settings.py' 2022-07-08T10:46:07,742 adding 'clearCNV/viz_reassignment/store.py' 2022-07-08T10:46:07,745 adding 'clearCNV/viz_reassignment/ui.py' 2022-07-08T10:46:07,748 adding 'clearCNV/viz_reassignment/ui_plots.py' 2022-07-08T10:46:07,779 adding 'clearCNV/viz_reassignment/assets/bootstrap.min.css' 2022-07-08T10:46:07,785 adding 'clearCNV/viz_reassignment/assets/clear-cnv.css' 2022-07-08T10:46:07,799 adding 'clearCNV/viz_reassignment/assets/fontawesome/css/all.min.css' 2022-07-08T10:46:07,856 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.eot' 2022-07-08T10:46:08,311 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.svg' 2022-07-08T10:46:08,381 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.ttf' 2022-07-08T10:46:08,407 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff' 2022-07-08T10:46:08,429 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-brands-400.woff2' 2022-07-08T10:46:08,442 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.eot' 2022-07-08T10:46:08,498 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.svg' 2022-07-08T10:46:08,512 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.ttf' 2022-07-08T10:46:08,518 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff' 2022-07-08T10:46:08,522 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-regular-400.woff2' 2022-07-08T10:46:08,598 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.eot' 2022-07-08T10:46:08,960 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.svg' 2022-07-08T10:46:09,053 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.ttf' 2022-07-08T10:46:09,083 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff' 2022-07-08T10:46:09,105 adding 'clearCNV/viz_reassignment/assets/fontawesome/webfonts/fa-solid-900.woff2' 2022-07-08T10:46:09,111 adding 'clearCNV/workflow/Snakefile_cnv_calling' 2022-07-08T10:46:09,114 adding 'clearCNV/workflow/Snakefile_reassignment' 2022-07-08T10:46:09,116 adding 'clearCNV/workflow/bih_cluster.json' 2022-07-08T10:46:09,118 adding 'clearCNV/workflow/config_cnv_calling.yml' 2022-07-08T10:46:09,120 adding 'clearCNV/workflow/config_reassignment.yml' 2022-07-08T10:46:09,126 adding 'tests/__init__.py' 2022-07-08T10:46:09,128 adding 'tests/test_misc.py' 2022-07-08T10:46:09,133 adding 'tests/testdata/GC_annotations.bed' 2022-07-08T10:46:09,135 adding 'tests/testdata/allbams.txt' 2022-07-08T10:46:09,137 adding 'tests/testdata/allmerged.bed' 2022-07-08T10:46:09,139 adding 'tests/testdata/annotations.bed' 2022-07-08T10:46:09,141 adding 'tests/testdata/annotations2.bed' 2022-07-08T10:46:09,143 adding 'tests/testdata/bamfiles.txt' 2022-07-08T10:46:09,145 adding 'tests/testdata/bedfile.bed' 2022-07-08T10:46:09,147 adding 'tests/testdata/bedfile_alt.bed' 2022-07-08T10:46:09,150 adding 'tests/testdata/cov.tsv' 2022-07-08T10:46:09,700 adding 'tests/testdata/cov_reassignment.tsv' 2022-07-08T10:46:09,717 adding 'tests/testdata/coverages.tsv' 2022-07-08T10:46:09,719 adding 'tests/testdata/mappability.bed' 2022-07-08T10:46:09,721 adding 'tests/testdata/mappability.eq.1.bed' 2022-07-08T10:46:09,726 adding 'tests/testdata/matchscores.tsv' 2022-07-08T10:46:09,729 adding 'tests/testdata/merged.bed' 2022-07-08T10:46:09,731 adding 'tests/testdata/meta.tsv' 2022-07-08T10:46:09,737 adding 'tests/testdata/panel1.bed' 2022-07-08T10:46:09,744 adding 'tests/testdata/panel2.bed' 2022-07-08T10:46:09,746 adding 'tests/testdata/reassignment_p1_bamfiles.txt' 2022-07-08T10:46:09,748 adding 'tests/testdata/reassignment_p2_bamfiles.txt' 2022-07-08T10:46:09,755 adding 'tests/testdata/reassignment_union.bed' 2022-07-08T10:46:09,762 adding 'tests/testdata/reference.fa' 2022-07-08T10:46:09,764 adding 'tests/testdata/reference.fa.fai' 2022-07-08T10:46:09,766 adding 'tests/testdata/sample01.rtbed' 2022-07-08T10:46:09,769 adding 'tests/testdata/sample02.rtbed' 2022-07-08T10:46:09,771 adding 'tests/testdata/sample03.rtbed' 2022-07-08T10:46:09,789 adding 'tests/testdata/small.bam' 2022-07-08T10:46:09,797 adding 'tests/testdata/small.bam.bai' 2022-07-08T10:46:09,801 adding 'tests/testdata/small.rtbed' 2022-07-08T10:46:09,803 adding 'tests/testdata/targets.bed' 2022-07-08T10:46:09,805 adding 'tests/testdata/test_merge_bed_input.bed' 2022-07-08T10:46:09,807 adding 'tests/testdata/test_merge_bed_output.bed' 2022-07-08T10:46:09,809 adding 'tests/testdata/test_merge_beds_input_0.bed' 2022-07-08T10:46:09,811 adding 'tests/testdata/test_merge_beds_input_1.bed' 2022-07-08T10:46:09,813 adding 'tests/testdata/test_merge_beds_output.bed' 2022-07-08T10:46:09,815 adding 'tests/testdata/test_reassign_meta.tsv' 2022-07-08T10:46:09,817 adding 'tests/testdata/test_reassign_panel0.bed' 2022-07-08T10:46:09,818 adding 'tests/testdata/test_reassign_panel1.bed' 2022-07-08T10:46:09,837 adding 'tests/testdata/test_reassign_small_0.bam' 2022-07-08T10:46:09,845 adding 'tests/testdata/test_reassign_small_0.bam.bai' 2022-07-08T10:46:09,866 adding 'tests/testdata/test_reassign_small_1.bam' 2022-07-08T10:46:09,873 adding 'tests/testdata/test_reassign_small_1.bam.bai' 2022-07-08T10:46:09,877 adding 'tests/testdata/test_reassignment_coverages.tsv' 2022-07-08T10:46:09,879 adding 'tests/testdata/test_reassignment_p1_bamfiles.txt' 2022-07-08T10:46:09,881 adding 'tests/testdata/test_reassignment_p2_bamfiles.txt' 2022-07-08T10:46:09,888 adding 'tests/testdata/test_reassignment_ref.fa' 2022-07-08T10:46:09,890 adding 'tests/testdata/test_reassignment_ref.fa.fai' 2022-07-08T10:46:09,892 adding 'tests/testdata/test_reassignment_union.bed' 2022-07-08T10:46:09,895 adding 'tests/testdata/covs/test_reassign_small_0.rtbed' 2022-07-08T10:46:09,897 adding 'tests/testdata/covs/test_reassign_small_1.rtbed' 2022-07-08T10:46:09,899 adding 'clearCNV-0.306.dist-info/LICENSE' 2022-07-08T10:46:09,902 adding 'clearCNV-0.306.dist-info/METADATA' 2022-07-08T10:46:09,904 adding 'clearCNV-0.306.dist-info/WHEEL' 2022-07-08T10:46:09,906 adding 'clearCNV-0.306.dist-info/entry_points.txt' 2022-07-08T10:46:09,907 adding 'clearCNV-0.306.dist-info/top_level.txt' 2022-07-08T10:46:09,910 adding 'clearCNV-0.306.dist-info/RECORD' 2022-07-08T10:46:09,964 removing build/bdist.linux-armv7l/wheel 2022-07-08T10:46:10,251 Building wheel for clearcnv (setup.py): finished with status 'done' 2022-07-08T10:46:10,311 Created wheel for clearcnv: filename=clearCNV-0.306-py2.py3-none-any.whl size=1815553 sha256=aaa74e4ce55ed510623dd2b23c01dd311fc82aeae3f443b2bbc30b14b78502f1 2022-07-08T10:46:10,313 Stored in directory: /tmp/pip-ephem-wheel-cache-kv1i0eo7/wheels/05/43/17/6355d4b1498c8fc535ecfc54aea396aad7214176470cc5b946 2022-07-08T10:46:10,348 Successfully built clearcnv 2022-07-08T10:46:10,487 Removed build tracker: '/tmp/pip-build-tracker-x3rzc3f_'