2022-07-08T23:41:45,308 Created temporary directory: /tmp/pip-ephem-wheel-cache-8lw2acrw 2022-07-08T23:41:45,314 Created temporary directory: /tmp/pip-build-tracker-541u4pve 2022-07-08T23:41:45,314 Initialized build tracking at /tmp/pip-build-tracker-541u4pve 2022-07-08T23:41:45,315 Created build tracker: /tmp/pip-build-tracker-541u4pve 2022-07-08T23:41:45,315 Entered build tracker: /tmp/pip-build-tracker-541u4pve 2022-07-08T23:41:45,316 Created temporary directory: /tmp/pip-wheel-a7ya_01y 2022-07-08T23:41:45,387 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-08T23:41:45,396 2 location(s) to search for versions of biolink-model: 2022-07-08T23:41:45,396 * https://pypi.org/simple/biolink-model/ 2022-07-08T23:41:45,396 * https://www.piwheels.org/simple/biolink-model/ 2022-07-08T23:41:45,397 Fetching project page and analyzing links: https://pypi.org/simple/biolink-model/ 2022-07-08T23:41:45,398 Getting page https://pypi.org/simple/biolink-model/ 2022-07-08T23:41:45,401 Found index url https://pypi.org/simple 2022-07-08T23:41:45,539 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/80/c5/10448ca87ee7b01a84d58cc02baa88947efa6078ff0fab90b2b52cbb5390/biolink_model-1.2.1-py3-none-any.whl#sha256=a49926d94251015ef2e5444bf3a3c4dc5d32f174b1dd25078181266931e53c88 (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,540 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/7f/da/36fca531508faadf77efebd2d65e2f43963afd84b8a4aaf3bbda517645f6/biolink_model-1.2.2-py3-none-any.whl#sha256=460f615978ea5b78c1736ba23bc4c05f92a8125034eed571f83a57f1fc06f8fd (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,541 Found link 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2022-07-08T23:41:45,544 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/dc/78/683fc1002123840b16676d01be017b6ed7f54a6da35b746f23fd2dbe771b/biolink_model-1.2.4-py3-none-any.whl#sha256=903f752ed3430dbab76022e2c69176550e267eb9c55ac4cb39b98d9b270609d0 (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,546 Found link https://files.pythonhosted.org/packages/88/35/f259797a4b6b869cba83c791544bf6bb4a70c0e5f7f1bc31de053a2c68f5/biolink_model-1.2.4.tar.gz#sha256=3ae27c24eebb09ca1e885ab216fc537ab91ddbaea4eb21dd1d208e387df8ca9c (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 1.2.4 2022-07-08T23:41:45,546 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/e3/38/47b48e058279843b0aea82639190d99e0f4fa6d448f438d95372657c2ed4/biolink_model-1.2.5-py3-none-any.whl#sha256=d4fb26095d715bd9abea9e36b3a3c14299c2de72b3c2333e8dc4b91248af2fb7 (from 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2022-07-08T23:41:45,553 Found link https://files.pythonhosted.org/packages/88/18/b24a1ab3f95e380b7f8f06b303b27e008aa38e8ac01d7f96ce0fb9f11e0f/biolink-model-2.2.9.tar.gz#sha256=042a73f5792e656e12f9120e62a75b5ca189db786723e3dd4181cfd7239daf8c (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 2.2.9 2022-07-08T23:41:45,554 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/7d/fd/ec790a91b2a4cb4c04e5d747bcba51d72d5ca4096e9d9b0965c742583a31/biolink_model-2.2.9-py3-none-any.whl#sha256=b218a1edb189ce8278729b4c6f608ce8d16fcb49797af6c2cbc07c70b2324a5d (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,555 Found link https://files.pythonhosted.org/packages/b8/da/b2c5c667fdeaa5ade33b8dd017cb445f5b9ed53d12186bfeeac31a8a575d/biolink-model-2.2.10.tar.gz#sha256=136ad54e9537658daa7d25e6cb91f28f2eabd377c97ad237bfffcb141e78b881 (from https://pypi.org/simple/biolink-model/) 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2022-07-08T23:41:45,561 Found link https://files.pythonhosted.org/packages/de/20/f4334ed6db0c964e6223440f1ac9efec385a9d8278c78632872fc3c3e734/biolink-model-2.2.13.tar.gz#sha256=591423b85c394a57da6c35831ee24b8103b283cfe1352b4e08cbce9acf295ecb (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 2.2.13 2022-07-08T23:41:45,562 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/94/4f/8d989dc755caada26778edbf7e2e21847642c73f0c6c42ebdaac2ae7fda7/biolink_model-2.2.13-py3-none-any.whl#sha256=55ecc00297af4eba9466acc86d46c028122cdba1ecac19edfa02aebd8f082a1c (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,563 Found link https://files.pythonhosted.org/packages/0e/5e/955c3acd3542071549ab4d593422af267b7150e2ba6aab7702dbf588498b/biolink-model-2.2.14.tar.gz#sha256=fa83916b98e5aca3b1aef91f290bf5a98507ba703c254f3edd5e230991d4273b (from https://pypi.org/simple/biolink-model/) 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2022-07-08T23:41:45,569 Found link https://files.pythonhosted.org/packages/32/88/5a6e5476e7e53d15e0de3e55728d9c3cc4ec7d3429591a207f661cd7268a/biolink-model-2.4.0.tar.gz#sha256=e751d1dda715edfe60e6ddcafa629bee11b95c0f40e904438cb1c5a1a99a86eb (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 2.4.0 2022-07-08T23:41:45,570 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/1e/8b/b69892677f126e4fbe35288920729cf2e711fbfc703fa4ab49a8c3964270/biolink_model-2.4.0-py3-none-any.whl#sha256=35a1262ae876b14fa34d2fefd00afb876b14c16db55ba9c9c6d128b936c137b6 (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,571 Found link https://files.pythonhosted.org/packages/7f/cc/dbcf549cd32a6752592697a32feb1ef33e5720e4216abbd140999c6a85e1/biolink-model-2.4.1.tar.gz#sha256=c04e4590ef6a9cb527c0d0cad383159eab0d41d7ee80b1a07531855f6c10270e (from https://pypi.org/simple/biolink-model/) 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https://files.pythonhosted.org/packages/ed/10/db4f3b89126341ad84bd1d320973fe5f386d6e8ba6a5253ef458cb43c119/biolink_model-2.4.2-py3-none-any.whl#sha256=217c347ebf2704a22b567c742dc3cebf88eb0d7fe7e4224c733fb84db6952919 (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,575 Found link https://files.pythonhosted.org/packages/51/8a/58c196a1627a36ada347812679ce93eff307f8dd4eae27658d4dfa3eb298/biolink-model-2.4.4.tar.gz#sha256=ee9cd70ec251f76c666eb18e5ac8c061577ae738a6f4fd936ccd690a4b99bd76 (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 2.4.4 2022-07-08T23:41:45,576 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/f1/89/4f925fb5d434292c8944f66e7b5cba25d1aa1f4ab06d58e84afc4d4911f5/biolink_model-2.4.4-py3-none-any.whl#sha256=29a20fc00b469e5323d88537bedbea6af9d124b31efd417a94b749440a3e1e94 (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,577 Found link https://files.pythonhosted.org/packages/e9/21/9be3d2bc896c61d9330c64ae2adbc9dd9940c5246c22572536fb3cd8f849/biolink-model-2.4.5.tar.gz#sha256=b691c229d7f01aa6dd3c86f1e0ecf7e3a680a242d5913350471715a24535940a (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 2.4.5 2022-07-08T23:41:45,578 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/ec/cd/2dbc4b8499a9573b6cef02f384eb61e57f22b2f14004b4b070921ffa1e18/biolink_model-2.4.5-py3-none-any.whl#sha256=5dfbed9fae9823956faa93ca0c2a89ec970bd695ec2e2ee7c2cd1a879b4b0b58 (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,578 Fetching project page and analyzing links: https://www.piwheels.org/simple/biolink-model/ 2022-07-08T23:41:45,579 Getting page https://www.piwheels.org/simple/biolink-model/ 2022-07-08T23:41:45,581 Found index url https://www.piwheels.org/simple 2022-07-08T23:41:45,887 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.5-py3-none-any.whl#sha256=d4fb26095d715bd9abea9e36b3a3c14299c2de72b3c2333e8dc4b91248af2fb7 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,888 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.4-py3-none-any.whl#sha256=903f752ed3430dbab76022e2c69176550e267eb9c55ac4cb39b98d9b270609d0 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,889 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.3-py3-none-any.whl#sha256=882f1d08c2a5605c40c0ae3368dcc1acbf5349c9f9aff243c999f6fa575a1e52 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,889 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.2-py3-none-any.whl#sha256=460f615978ea5b78c1736ba23bc4c05f92a8125034eed571f83a57f1fc06f8fd (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2022-07-08T23:41:45,890 Skipping link: not a file: https://www.piwheels.org/simple/biolink-model/ 2022-07-08T23:41:45,890 Skipping link: not a file: https://pypi.org/simple/biolink-model/ 2022-07-08T23:41:45,942 Given no hashes to check 1 links for project 'biolink-model': discarding no candidates 2022-07-08T23:41:45,984 Collecting biolink-model==2.4.5 2022-07-08T23:41:45,988 Created temporary directory: /tmp/pip-unpack-07qfjxlm 2022-07-08T23:41:46,084 Downloading biolink-model-2.4.5.tar.gz (66 kB) 2022-07-08T23:41:46,253 Added biolink-model==2.4.5 from https://files.pythonhosted.org/packages/e9/21/9be3d2bc896c61d9330c64ae2adbc9dd9940c5246c22572536fb3cd8f849/biolink-model-2.4.5.tar.gz#sha256=b691c229d7f01aa6dd3c86f1e0ecf7e3a680a242d5913350471715a24535940a to build tracker '/tmp/pip-build-tracker-541u4pve' 2022-07-08T23:41:46,257 Running setup.py (path:/tmp/pip-wheel-a7ya_01y/biolink-model_fdc82c75fd2546e68596eb16c25f3354/setup.py) egg_info for package biolink-model 2022-07-08T23:41:46,258 Created temporary directory: /tmp/pip-pip-egg-info-xhnuo0gd 2022-07-08T23:41:46,258 Preparing metadata (setup.py): started 2022-07-08T23:41:46,260 Running command python setup.py egg_info 2022-07-08T23:41:48,473 Traceback (most recent call last): 2022-07-08T23:41:48,474 File "", line 2, in 2022-07-08T23:41:48,475 File "", line 34, in 2022-07-08T23:41:48,479 File "/tmp/pip-wheel-a7ya_01y/biolink-model_fdc82c75fd2546e68596eb16c25f3354/setup.py", line 5, in 2022-07-08T23:41:48,480 with open("requirements.txt", "r") as FH: 2022-07-08T23:41:48,481 FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt' 2022-07-08T23:41:48,621 ERROR: [present-rich] python setup.py egg_info exited with 1 2022-07-08T23:41:48,666 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2022-07-08T23:41:48,666 exec(compile('"'"''"'"''"'"' 2022-07-08T23:41:48,666 # This is -- a caller that pip uses to run setup.py 2022-07-08T23:41:48,666 # 2022-07-08T23:41:48,666 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-07-08T23:41:48,666 # import from `distutils.core` to work with newer packaging standards. 2022-07-08T23:41:48,666 # - It provides a clear error message when setuptools is not installed. 2022-07-08T23:41:48,666 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-07-08T23:41:48,666 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-07-08T23:41:48,666 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-07-08T23:41:48,666 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-07-08T23:41:48,666 import os, sys, tokenize 2022-07-08T23:41:48,666 2022-07-08T23:41:48,666 try: 2022-07-08T23:41:48,666 import setuptools 2022-07-08T23:41:48,666 except ImportError as error: 2022-07-08T23:41:48,666 print( 2022-07-08T23:41:48,666 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-07-08T23:41:48,666 "the build environment.", 2022-07-08T23:41:48,666 file=sys.stderr, 2022-07-08T23:41:48,666 ) 2022-07-08T23:41:48,666 sys.exit(1) 2022-07-08T23:41:48,666 2022-07-08T23:41:48,666 __file__ = %r 2022-07-08T23:41:48,666 sys.argv[0] = __file__ 2022-07-08T23:41:48,666 2022-07-08T23:41:48,666 if os.path.exists(__file__): 2022-07-08T23:41:48,666 filename = __file__ 2022-07-08T23:41:48,666 with tokenize.open(__file__) as f: 2022-07-08T23:41:48,666 setup_py_code = f.read() 2022-07-08T23:41:48,666 else: 2022-07-08T23:41:48,666 filename = "" 2022-07-08T23:41:48,666 setup_py_code = "from setuptools import setup; setup()" 2022-07-08T23:41:48,666 2022-07-08T23:41:48,666 exec(compile(setup_py_code, filename, "exec")) 2022-07-08T23:41:48,666 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-a7ya_01y/biolink-model_fdc82c75fd2546e68596eb16c25f3354/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-xhnuo0gd[/] 2022-07-08T23:41:48,667 [bold magenta]cwd[/]: /tmp/pip-wheel-a7ya_01y/biolink-model_fdc82c75fd2546e68596eb16c25f3354/ 2022-07-08T23:41:48,668 Preparing metadata (setup.py): finished with status 'error' 2022-07-08T23:41:48,670 ERROR: [present-rich] metadata generation failed 2022-07-08T23:41:48,684 Exception information: 2022-07-08T23:41:48,684 Traceback (most recent call last): 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2022-07-08T23:41:48,684 call_subprocess( 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2022-07-08T23:41:48,684 raise error 2022-07-08T23:41:48,684 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2022-07-08T23:41:48,684 2022-07-08T23:41:48,684 The above exception was the direct cause of the following exception: 2022-07-08T23:41:48,684 2022-07-08T23:41:48,684 Traceback (most recent call last): 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 167, in exc_logging_wrapper 2022-07-08T23:41:48,684 status = run_func(*args) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2022-07-08T23:41:48,684 return func(self, options, args) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 144, in run 2022-07-08T23:41:48,684 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 94, in resolve 2022-07-08T23:41:48,684 result = self._result = resolver.resolve( 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2022-07-08T23:41:48,684 state = resolution.resolve(requirements, max_rounds=max_rounds) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2022-07-08T23:41:48,684 self._add_to_criteria(self.state.criteria, r, parent=None) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2022-07-08T23:41:48,684 if not criterion.candidates: 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2022-07-08T23:41:48,684 return bool(self._sequence) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2022-07-08T23:41:48,684 return any(self) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2022-07-08T23:41:48,684 return (c for c in iterator if id(c) not in self._incompatible_ids) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2022-07-08T23:41:48,684 candidate = func() 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 215, in _make_candidate_from_link 2022-07-08T23:41:48,684 self._link_candidate_cache[link] = LinkCandidate( 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 291, in __init__ 2022-07-08T23:41:48,684 super().__init__( 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 161, in __init__ 2022-07-08T23:41:48,684 self.dist = self._prepare() 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 230, in _prepare 2022-07-08T23:41:48,684 dist = self._prepare_distribution() 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 302, in _prepare_distribution 2022-07-08T23:41:48,684 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 421, in prepare_linked_requirement 2022-07-08T23:41:48,684 return self._prepare_linked_requirement(req, parallel_builds) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 490, in _prepare_linked_requirement 2022-07-08T23:41:48,684 dist = _get_prepared_distribution( 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 57, in _get_prepared_distribution 2022-07-08T23:41:48,684 abstract_dist.prepare_distribution_metadata(finder, build_isolation) 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 56, in prepare_distribution_metadata 2022-07-08T23:41:48,684 self.req.prepare_metadata() 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 532, in prepare_metadata 2022-07-08T23:41:48,684 self.metadata_directory = generate_metadata_legacy( 2022-07-08T23:41:48,684 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2022-07-08T23:41:48,684 raise MetadataGenerationFailed(package_details=details) from error 2022-07-08T23:41:48,684 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2022-07-08T23:41:48,707 Removed biolink-model==2.4.5 from https://files.pythonhosted.org/packages/e9/21/9be3d2bc896c61d9330c64ae2adbc9dd9940c5246c22572536fb3cd8f849/biolink-model-2.4.5.tar.gz#sha256=b691c229d7f01aa6dd3c86f1e0ecf7e3a680a242d5913350471715a24535940a from build tracker '/tmp/pip-build-tracker-541u4pve' 2022-07-08T23:41:48,708 Removed build tracker: '/tmp/pip-build-tracker-541u4pve'