2022-07-15T03:47:30,982 Created temporary directory: /tmp/pip-ephem-wheel-cache-wzce1ql8
2022-07-15T03:47:30,987 Created temporary directory: /tmp/pip-build-tracker-gict0y_6
2022-07-15T03:47:30,988 Initialized build tracking at /tmp/pip-build-tracker-gict0y_6
2022-07-15T03:47:30,988 Created build tracker: /tmp/pip-build-tracker-gict0y_6
2022-07-15T03:47:30,989 Entered build tracker: /tmp/pip-build-tracker-gict0y_6
2022-07-15T03:47:30,990 Created temporary directory: /tmp/pip-wheel-zuvgkwtl
2022-07-15T03:47:31,065 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-15T03:47:31,073 2 location(s) to search for versions of pybiotk:
2022-07-15T03:47:31,073 * https://pypi.org/simple/pybiotk/
2022-07-15T03:47:31,073 * https://www.piwheels.org/simple/pybiotk/
2022-07-15T03:47:31,074 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/
2022-07-15T03:47:31,075 Getting page https://pypi.org/simple/pybiotk/
2022-07-15T03:47:31,079 Found index url https://pypi.org/simple
2022-07-15T03:47:31,191   Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz#sha256=d1084859e25ae3e660f8ebdc6b9e46343b087390472951edcdfe01ebc6893e2f (from https://pypi.org/simple/pybiotk/), version: 1.0.3
2022-07-15T03:47:31,192 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/
2022-07-15T03:47:31,192 Getting page https://www.piwheels.org/simple/pybiotk/
2022-07-15T03:47:31,194 Found index url https://www.piwheels.org/simple
2022-07-15T03:47:31,413   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-07-15T03:47:31,414   Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/)
2022-07-15T03:47:31,415 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/
2022-07-15T03:47:31,415 Skipping link: not a file: https://pypi.org/simple/pybiotk/
2022-07-15T03:47:31,460 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates
2022-07-15T03:47:31,502 Collecting pybiotk==1.0.3
2022-07-15T03:47:31,506   Created temporary directory: /tmp/pip-unpack-t60awzkx
2022-07-15T03:47:31,599   Downloading pybiotk-1.0.3.tar.gz (87 kB)
2022-07-15T03:47:32,140   Added pybiotk==1.0.3 from https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz#sha256=d1084859e25ae3e660f8ebdc6b9e46343b087390472951edcdfe01ebc6893e2f to build tracker '/tmp/pip-build-tracker-gict0y_6'
2022-07-15T03:47:32,156   Created temporary directory: /tmp/pip-build-env-vma90rgi
2022-07-15T03:47:32,177   Created temporary directory: /tmp/pip-standalone-pip-10ub87am
2022-07-15T03:47:34,519   Installing build dependencies: started
2022-07-15T03:47:34,521   Running command pip subprocess to install build dependencies
2022-07-15T03:47:45,769   Using pip 22.1.2 from /tmp/pip-standalone-pip-10ub87am/__env_pip__.zip/pip (python 3.9)
2022-07-15T03:47:47,425   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-07-15T03:47:51,460   Collecting setuptools>=46.1.0
2022-07-15T03:47:51,759     Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.2.0-py3-none-any.whl (1.2 MB)
2022-07-15T03:47:52,773   Collecting setuptools_scm[toml]>=5
2022-07-15T03:47:52,821     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB)
2022-07-15T03:47:53,369   Collecting wheel
2022-07-15T03:47:53,402     Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB)
2022-07-15T03:47:56,849   Collecting Cython>=0.29.30
2022-07-15T03:47:57,900     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.30-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-07-15T03:47:58,588   Collecting typing-extensions
2022-07-15T03:47:58,619     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.3.0-py3-none-any.whl (25 kB)
2022-07-15T03:47:58,909   Collecting tomli>=1.0.0
2022-07-15T03:47:58,941     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-07-15T03:47:59,367   Collecting packaging>=20.0
2022-07-15T03:47:59,401     Using cached https://www.piwheels.org/simple/packaging/packaging-21.3-py3-none-any.whl (40 kB)
2022-07-15T03:48:01,066   Collecting pyparsing!=3.0.5,>=2.0.2
2022-07-15T03:48:01,112     Using cached https://www.piwheels.org/simple/pyparsing/pyparsing-3.0.9-py3-none-any.whl (98 kB)
2022-07-15T03:48:08,593   Installing collected packages: wheel, typing-extensions, tomli, setuptools, pyparsing, Cython, packaging, setuptools_scm
2022-07-15T03:48:08,890     Creating /tmp/pip-build-env-vma90rgi/overlay/bin
2022-07-15T03:48:08,894     changing mode of /tmp/pip-build-env-vma90rgi/overlay/bin/wheel to 755
2022-07-15T03:48:21,588     changing mode of /tmp/pip-build-env-vma90rgi/overlay/bin/cygdb to 755
2022-07-15T03:48:21,592     changing mode of /tmp/pip-build-env-vma90rgi/overlay/bin/cython to 755
2022-07-15T03:48:21,597     changing mode of /tmp/pip-build-env-vma90rgi/overlay/bin/cythonize to 755
2022-07-15T03:48:22,283   Successfully installed Cython-0.29.30 packaging-21.3 pyparsing-3.0.9 setuptools-63.2.0 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.3.0 wheel-0.37.1
2022-07-15T03:48:23,113   Installing build dependencies: finished with status 'done'
2022-07-15T03:48:23,142   Getting requirements to build wheel: started
2022-07-15T03:48:23,144   Running command Getting requirements to build wheel
2022-07-15T03:48:27,003   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zuvgkwtl/pybiotk_d6b1b62cecb04f7885c62ff78fea4498/src/bx/bitset.pyx
2022-07-15T03:48:27,005     tree = Parsing.p_module(s, pxd, full_module_name)
2022-07-15T03:48:27,956   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zuvgkwtl/pybiotk_d6b1b62cecb04f7885c62ff78fea4498/src/bx/cluster.pyx
2022-07-15T03:48:27,956     tree = Parsing.p_module(s, pxd, full_module_name)
2022-07-15T03:48:28,219   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zuvgkwtl/pybiotk_d6b1b62cecb04f7885c62ff78fea4498/src/bx/intersection.pyx
2022-07-15T03:48:28,220     tree = Parsing.p_module(s, pxd, full_module_name)
2022-07-15T03:48:29,723   Compiling src/bx/bitset.pyx because it changed.
2022-07-15T03:48:29,723   Compiling src/bx/cluster.pyx because it changed.
2022-07-15T03:48:29,724   Compiling src/bx/intersection.pyx because it changed.
2022-07-15T03:48:29,724   [1/3] Cythonizing src/bx/bitset.pyx
2022-07-15T03:48:29,724   [2/3] Cythonizing src/bx/cluster.pyx
2022-07-15T03:48:29,725   [3/3] Cythonizing src/bx/intersection.pyx
2022-07-15T03:48:33,706   running egg_info
2022-07-15T03:48:34,304   writing src/pybiotk.egg-info/PKG-INFO
2022-07-15T03:48:34,862   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-07-15T03:48:36,535   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-07-15T03:48:37,654   writing requirements to src/pybiotk.egg-info/requires.txt
2022-07-15T03:48:38,214   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-07-15T03:48:38,860   package init file 'src/bx/__init__.py' not found (or not a regular file)
2022-07-15T03:48:39,642   listing git files failed - pretending there aren't any
2022-07-15T03:48:39,667   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-07-15T03:48:39,685   adding license file 'LICENSE.txt'
2022-07-15T03:48:39,701   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-07-15T03:48:40,068   Getting requirements to build wheel: finished with status 'done'
2022-07-15T03:48:40,097   Created temporary directory: /tmp/pip-modern-metadata-k52flpdk
2022-07-15T03:48:40,103   Preparing metadata (pyproject.toml): started
2022-07-15T03:48:40,105   Running command Preparing metadata (pyproject.toml)
2022-07-15T03:48:47,143   running dist_info
2022-07-15T03:48:47,763   creating /tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info
2022-07-15T03:48:48,355   writing /tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info/PKG-INFO
2022-07-15T03:48:48,917   writing dependency_links to /tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info/dependency_links.txt
2022-07-15T03:48:50,589   writing entry points to /tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info/entry_points.txt
2022-07-15T03:48:51,705   writing requirements to /tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info/requires.txt
2022-07-15T03:48:52,265   writing top-level names to /tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info/top_level.txt
2022-07-15T03:48:52,268   writing manifest file '/tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info/SOURCES.txt'
2022-07-15T03:48:52,903   package init file 'src/bx/__init__.py' not found (or not a regular file)
2022-07-15T03:48:53,680   listing git files failed - pretending there aren't any
2022-07-15T03:48:53,701   reading manifest file '/tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info/SOURCES.txt'
2022-07-15T03:48:53,705   adding license file 'LICENSE.txt'
2022-07-15T03:48:53,717   writing manifest file '/tmp/pip-modern-metadata-k52flpdk/pybiotk.egg-info/SOURCES.txt'
2022-07-15T03:48:53,720   creating '/tmp/pip-modern-metadata-k52flpdk/pybiotk-1.0.3.dist-info'
2022-07-15T03:48:53,951   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-07-15T03:48:54,289   Preparing metadata (pyproject.toml): finished with status 'done'
2022-07-15T03:48:54,304   Source in /tmp/pip-wheel-zuvgkwtl/pybiotk_d6b1b62cecb04f7885c62ff78fea4498 has version 1.0.3, which satisfies requirement pybiotk==1.0.3 from https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz#sha256=d1084859e25ae3e660f8ebdc6b9e46343b087390472951edcdfe01ebc6893e2f
2022-07-15T03:48:54,306   Removed pybiotk==1.0.3 from https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz#sha256=d1084859e25ae3e660f8ebdc6b9e46343b087390472951edcdfe01ebc6893e2f from build tracker '/tmp/pip-build-tracker-gict0y_6'
2022-07-15T03:48:54,315 Created temporary directory: /tmp/pip-unpack-vo6qvct2
2022-07-15T03:48:54,316 Building wheels for collected packages: pybiotk
2022-07-15T03:48:54,326   Created temporary directory: /tmp/pip-wheel-xr_b46zj
2022-07-15T03:48:54,326   Destination directory: /tmp/pip-wheel-xr_b46zj
2022-07-15T03:48:54,331   Building wheel for pybiotk (pyproject.toml): started
2022-07-15T03:48:54,333   Running command Building wheel for pybiotk (pyproject.toml)
2022-07-15T03:49:00,877   running bdist_wheel
2022-07-15T03:49:01,573   running build
2022-07-15T03:49:01,574   running build_py
2022-07-15T03:49:02,169   package init file 'src/bx/__init__.py' not found (or not a regular file)
2022-07-15T03:49:02,173   creating build/lib.linux-armv7l-cpython-39
2022-07-15T03:49:02,173   creating build/lib.linux-armv7l-cpython-39/pybiotk
2022-07-15T03:49:02,175   copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk
2022-07-15T03:49:02,180   creating build/lib.linux-armv7l-cpython-39/stream
2022-07-15T03:49:02,181   copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream
2022-07-15T03:49:02,186   copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream
2022-07-15T03:49:02,190   copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream
2022-07-15T03:49:02,194   creating build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-15T03:49:02,196   copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-15T03:49:02,201   copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-15T03:49:02,205   copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-15T03:49:02,208   copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-15T03:49:02,212   copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-15T03:49:02,215   copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-15T03:49:02,219   copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io
2022-07-15T03:49:02,224   creating build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-07-15T03:49:02,226   copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-07-15T03:49:02,230   creating build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-15T03:49:02,231   copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-15T03:49:02,235   copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-15T03:49:02,238   copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-15T03:49:02,242   copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-15T03:49:02,244   copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-15T03:49:02,247   copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert
2022-07-15T03:49:02,252   creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-15T03:49:02,253   copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-15T03:49:02,257   copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-15T03:49:02,261   copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-15T03:49:02,264   copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-15T03:49:02,268   copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb
2022-07-15T03:49:02,275   creating build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,276   copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,280   copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,283   copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,286   copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,289   copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,292   copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,296   copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,299   copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,303   copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,307   copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,310   copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,313   copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,317   copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,320   copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,324   copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,327   copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,330   copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils
2022-07-15T03:49:02,335   creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-15T03:49:02,336   copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-15T03:49:02,341   copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-15T03:49:02,344   copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-15T03:49:02,347   copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals
2022-07-15T03:49:02,350   running egg_info
2022-07-15T03:49:03,576   writing src/pybiotk.egg-info/PKG-INFO
2022-07-15T03:49:04,138   writing dependency_links to src/pybiotk.egg-info/dependency_links.txt
2022-07-15T03:49:05,842   writing entry points to src/pybiotk.egg-info/entry_points.txt
2022-07-15T03:49:06,974   writing requirements to src/pybiotk.egg-info/requires.txt
2022-07-15T03:49:07,533   writing top-level names to src/pybiotk.egg-info/top_level.txt
2022-07-15T03:49:07,664   listing git files failed - pretending there aren't any
2022-07-15T03:49:07,685   reading manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-07-15T03:49:07,703   adding license file 'LICENSE.txt'
2022-07-15T03:49:07,719   writing manifest file 'src/pybiotk.egg-info/SOURCES.txt'
2022-07-15T03:49:07,730   creating build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,732   copying src/bx/binBits.c -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,738   copying src/bx/binBits.h -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,742   copying src/bx/bits.c -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,746   copying src/bx/bits.h -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,750   copying src/bx/bitset.pyx -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,755   copying src/bx/cluster.c -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,760   copying src/bx/cluster.h -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,764   copying src/bx/cluster.pyx -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,768   copying src/bx/common.c -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,772   copying src/bx/common.h -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,775   copying src/bx/intersection.pyx -> build/lib.linux-armv7l-cpython-39/bx
2022-07-15T03:49:07,781   copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-07-15T03:49:07,786   copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data
2022-07-15T03:49:07,803   running build_ext
2022-07-15T03:49:07,815   building 'pybiotk.bx.bitset' extension
2022-07-15T03:49:07,816   creating build/temp.linux-armv7l-cpython-39
2022-07-15T03:49:07,817   creating build/temp.linux-armv7l-cpython-39/build
2022-07-15T03:49:07,818   creating build/temp.linux-armv7l-cpython-39/build/src
2022-07-15T03:49:07,819   creating build/temp.linux-armv7l-cpython-39/build/src/bx
2022-07-15T03:49:07,821   creating build/temp.linux-armv7l-cpython-39/src
2022-07-15T03:49:07,822   creating build/temp.linux-armv7l-cpython-39/src/bx
2022-07-15T03:49:07,824   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o
2022-07-15T03:49:20,060   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o
2022-07-15T03:49:20,991   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o
2022-07-15T03:49:21,294   src/bx/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
2022-07-15T03:49:21,294       9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $";
2022-07-15T03:49:21,295         |                   ^~~~~
2022-07-15T03:49:21,940   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o
2022-07-15T03:49:22,386   creating build/lib.linux-armv7l-cpython-39/pybiotk/bx
2022-07-15T03:49:22,387   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so
2022-07-15T03:49:22,693   building 'pybiotk.bx.cluster' extension
2022-07-15T03:49:22,695   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o
2022-07-15T03:49:27,558   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o
2022-07-15T03:49:28,730   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so
2022-07-15T03:49:28,978   building 'pybiotk.bx.intersection' extension
2022-07-15T03:49:28,980   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o
2022-07-15T03:49:49,963   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so
2022-07-15T03:49:50,275   running build_scripts
2022-07-15T03:49:50,277   creating build/scripts-3.9
2022-07-15T03:49:50,280   copying rscripts/plot_peak_width.R -> build/scripts-3.9
2022-07-15T03:49:50,285   copying rscripts/plot_hist.R -> build/scripts-3.9
2022-07-15T03:49:50,290   copying rscripts/plot_rep_cor.R -> build/scripts-3.9
2022-07-15T03:49:50,294   copying rscripts/plot_corr.R -> build/scripts-3.9
2022-07-15T03:49:50,298   copying rscripts/peak_anno.R -> build/scripts-3.9
2022-07-15T03:49:50,302   copying rscripts/plot_bar.R -> build/scripts-3.9
2022-07-15T03:49:50,307   copying rscripts/plot_summary.R -> build/scripts-3.9
2022-07-15T03:49:50,312   copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9
2022-07-15T03:49:50,317   copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9
2022-07-15T03:49:50,321   copying rscripts/plot_venn.R -> build/scripts-3.9
2022-07-15T03:49:50,325   copying rscripts/plot_FRiPs.R -> build/scripts-3.9
2022-07-15T03:49:50,329   copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9
2022-07-15T03:49:50,334   copying rscripts/diff_expr_plot.R -> build/scripts-3.9
2022-07-15T03:49:50,339   copying scripts/fasta_u2t.sh -> build/scripts-3.9
2022-07-15T03:49:50,343   copying scripts/merge_subseq.sh -> build/scripts-3.9
2022-07-15T03:49:50,347   copying scripts/gtfparser.sh -> build/scripts-3.9
2022-07-15T03:49:50,352   copying scripts/get_chrom_length.sh -> build/scripts-3.9
2022-07-15T03:49:50,356   copying scripts/fasta_len.sh -> build/scripts-3.9
2022-07-15T03:49:50,360   copying scripts/fastq_len.sh -> build/scripts-3.9
2022-07-15T03:49:50,364   copying scripts/remove_duplicates.sh -> build/scripts-3.9
2022-07-15T03:49:51,593   installing to build/bdist.linux-armv7l/wheel
2022-07-15T03:49:51,594   running install
2022-07-15T03:49:51,656   running install_lib
2022-07-15T03:49:52,258   creating build/bdist.linux-armv7l
2022-07-15T03:49:52,259   creating build/bdist.linux-armv7l/wheel
2022-07-15T03:49:52,264   creating build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,266   copying build/lib.linux-armv7l-cpython-39/bx/cluster.pyx -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,270   copying build/lib.linux-armv7l-cpython-39/bx/bits.h -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,274   copying build/lib.linux-armv7l-cpython-39/bx/bitset.pyx -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,279   copying build/lib.linux-armv7l-cpython-39/bx/common.c -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,282   copying build/lib.linux-armv7l-cpython-39/bx/bits.c -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,286   copying build/lib.linux-armv7l-cpython-39/bx/binBits.h -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,290   copying build/lib.linux-armv7l-cpython-39/bx/common.h -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,293   copying build/lib.linux-armv7l-cpython-39/bx/binBits.c -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,298   copying build/lib.linux-armv7l-cpython-39/bx/intersection.pyx -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,303   copying build/lib.linux-armv7l-cpython-39/bx/cluster.c -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,308   copying build/lib.linux-armv7l-cpython-39/bx/cluster.h -> build/bdist.linux-armv7l/wheel/bx
2022-07-15T03:49:52,312   creating build/bdist.linux-armv7l/wheel/pybiotk
2022-07-15T03:49:52,315   creating build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-07-15T03:49:52,317   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-07-15T03:49:52,330   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-07-15T03:49:52,369   copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx
2022-07-15T03:49:52,396   creating build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-15T03:49:52,397   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-15T03:49:52,402   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-15T03:49:52,407   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-15T03:49:52,410   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-15T03:49:52,414   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-15T03:49:52,418   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-15T03:49:52,422   copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io
2022-07-15T03:49:52,427   creating build/bdist.linux-armv7l/wheel/pybiotk/data
2022-07-15T03:49:52,429   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-07-15T03:49:52,433   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-07-15T03:49:52,436   copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data
2022-07-15T03:49:52,441   creating build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-15T03:49:52,442   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-15T03:49:52,446   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-15T03:49:52,450   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-15T03:49:52,454   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-15T03:49:52,457   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-15T03:49:52,460   copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert
2022-07-15T03:49:52,464   creating build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-15T03:49:52,466   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-15T03:49:52,471   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-15T03:49:52,476   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-15T03:49:52,480   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-15T03:49:52,484   copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb
2022-07-15T03:49:52,488   copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk
2022-07-15T03:49:52,493   creating build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,494   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,498   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,501   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,505   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,509   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,512   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,516   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,520   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,524   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,528   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,531   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,535   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,539   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,542   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,546   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,550   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,554   copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils
2022-07-15T03:49:52,559   creating build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-15T03:49:52,560   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-15T03:49:52,564   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-15T03:49:52,568   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-15T03:49:52,571   copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals
2022-07-15T03:49:52,575   creating build/bdist.linux-armv7l/wheel/stream
2022-07-15T03:49:52,577   copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream
2022-07-15T03:49:52,582   copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream
2022-07-15T03:49:52,586   copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream
2022-07-15T03:49:52,589   running install_egg_info
2022-07-15T03:49:53,187   Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.0.3-py3.9.egg-info
2022-07-15T03:49:53,217   running install_scripts
2022-07-15T03:49:53,273   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data
2022-07-15T03:49:53,274   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,276   copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,281   copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,285   copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,289   copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,292   copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,296   copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,300   copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,304   copying build/scripts-3.9/plot_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,308   copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,311   copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,316   copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,319   copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,322   copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,326   copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,330   copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,334   copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,337   copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,340   copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,343   copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,347   copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts
2022-07-15T03:49:53,351   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_peak_width.R to 755
2022-07-15T03:49:53,351   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_hist.R to 755
2022-07-15T03:49:53,351   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_rep_cor.R to 755
2022-07-15T03:49:53,352   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/fasta_u2t.sh to 755
2022-07-15T03:49:53,352   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_corr.R to 755
2022-07-15T03:49:53,353   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/peak_anno.R to 755
2022-07-15T03:49:53,353   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_bar.R to 755
2022-07-15T03:49:53,354   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_summary.R to 755
2022-07-15T03:49:53,354   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/merge_subseq.sh to 755
2022-07-15T03:49:53,355   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/diff_expr_edgeR.R to 755
2022-07-15T03:49:53,355   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_deeptools_fragmentsize.R to 755
2022-07-15T03:49:53,356   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_venn.R to 755
2022-07-15T03:49:53,356   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/plot_FRiPs.R to 755
2022-07-15T03:49:53,357   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/gtfparser.sh to 755
2022-07-15T03:49:53,358   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/diff_expr_DESeq2.R to 755
2022-07-15T03:49:53,358   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/get_chrom_length.sh to 755
2022-07-15T03:49:53,358   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/fasta_len.sh to 755
2022-07-15T03:49:53,359   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/fastq_len.sh to 755
2022-07-15T03:49:53,359   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/remove_duplicates.sh to 755
2022-07-15T03:49:53,360   changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.data/scripts/diff_expr_plot.R to 755
2022-07-15T03:49:53,462   adding license file "LICENSE.txt" (matched pattern "LICENSE.txt")
2022-07-15T03:49:53,512   creating build/bdist.linux-armv7l/wheel/pybiotk-1.0.3.dist-info/WHEEL
2022-07-15T03:49:53,517   creating '/tmp/pip-wheel-xr_b46zj/tmph1spqtcm/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-07-15T03:49:53,523   adding 'bx/binBits.c'
2022-07-15T03:49:53,526   adding 'bx/binBits.h'
2022-07-15T03:49:53,529   adding 'bx/bits.c'
2022-07-15T03:49:53,531   adding 'bx/bits.h'
2022-07-15T03:49:53,535   adding 'bx/bitset.pyx'
2022-07-15T03:49:53,539   adding 'bx/cluster.c'
2022-07-15T03:49:53,541   adding 'bx/cluster.h'
2022-07-15T03:49:53,544   adding 'bx/cluster.pyx'
2022-07-15T03:49:53,547   adding 'bx/common.c'
2022-07-15T03:49:53,549   adding 'bx/common.h'
2022-07-15T03:49:53,554   adding 'bx/intersection.pyx'
2022-07-15T03:49:53,558   adding 'pybiotk/__init__.py'
2022-07-15T03:49:53,562   adding 'pybiotk/annodb/__init__.py'
2022-07-15T03:49:53,565   adding 'pybiotk/annodb/anno.py'
2022-07-15T03:49:53,568   adding 'pybiotk/annodb/gene.py'
2022-07-15T03:49:53,572   adding 'pybiotk/annodb/merged_transcript.py'
2022-07-15T03:49:53,575   adding 'pybiotk/annodb/transcript.py'
2022-07-15T03:49:53,796   adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so'
2022-07-15T03:49:53,888   adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so'
2022-07-15T03:49:54,217   adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so'
2022-07-15T03:49:54,233   adding 'pybiotk/convert/__init__.py'
2022-07-15T03:49:54,236   adding 'pybiotk/convert/bam2fastx.py'
2022-07-15T03:49:54,238   adding 'pybiotk/convert/bampe_order_by_name.py'
2022-07-15T03:49:54,241   adding 'pybiotk/convert/bed2bedgraph.py'
2022-07-15T03:49:54,243   adding 'pybiotk/convert/fq2fasta.py'
2022-07-15T03:49:54,246   adding 'pybiotk/convert/gtf2bed.py'
2022-07-15T03:49:54,250   adding 'pybiotk/data/__init__.py'
2022-07-15T03:49:54,256   adding 'pybiotk/data/hg38.chrom.sizes'
2022-07-15T03:49:54,258   adding 'pybiotk/data/mm10.chrom.sizes'
2022-07-15T03:49:54,262   adding 'pybiotk/intervals/__init__.py'
2022-07-15T03:49:54,265   adding 'pybiotk/intervals/grange.py'
2022-07-15T03:49:54,267   adding 'pybiotk/intervals/merge_bed3.py'
2022-07-15T03:49:54,270   adding 'pybiotk/intervals/merge_intervals.py'
2022-07-15T03:49:54,273   adding 'pybiotk/io/__init__.py'
2022-07-15T03:49:54,277   adding 'pybiotk/io/bam.py'
2022-07-15T03:49:54,280   adding 'pybiotk/io/bed.py'
2022-07-15T03:49:54,283   adding 'pybiotk/io/bw.py'
2022-07-15T03:49:54,286   adding 'pybiotk/io/fasta.py'
2022-07-15T03:49:54,289   adding 'pybiotk/io/fastq.py'
2022-07-15T03:49:54,293   adding 'pybiotk/io/gtf.py'
2022-07-15T03:49:54,297   adding 'pybiotk/utils/__init__.py'
2022-07-15T03:49:54,299   adding 'pybiotk/utils/bam_random.py'
2022-07-15T03:49:54,302   adding 'pybiotk/utils/fasta_filter.py'
2022-07-15T03:49:54,305   adding 'pybiotk/utils/fastq_uniq.py'
2022-07-15T03:49:54,308   adding 'pybiotk/utils/fragment_size.py'
2022-07-15T03:49:54,310   adding 'pybiotk/utils/gtf_filter.py'
2022-07-15T03:49:54,313   adding 'pybiotk/utils/merge_row.py'
2022-07-15T03:49:54,316   adding 'pybiotk/utils/merge_subseq.py'
2022-07-15T03:49:54,319   adding 'pybiotk/utils/normalize.py'
2022-07-15T03:49:54,323   adding 'pybiotk/utils/pyanno.py'
2022-07-15T03:49:54,325   adding 'pybiotk/utils/read_tables.py'
2022-07-15T03:49:54,328   adding 'pybiotk/utils/reference_count.py'
2022-07-15T03:49:54,330   adding 'pybiotk/utils/rmats_filter.py'
2022-07-15T03:49:54,333   adding 'pybiotk/utils/seq_random.py'
2022-07-15T03:49:54,336   adding 'pybiotk/utils/subseq_analysis.py'
2022-07-15T03:49:54,340   adding 'pybiotk/utils/summary_log.py'
2022-07-15T03:49:54,343   adding 'pybiotk/utils/utils.py'
2022-07-15T03:49:54,349   adding 'pybiotk-1.0.3.data/scripts/diff_expr_DESeq2.R'
2022-07-15T03:49:54,352   adding 'pybiotk-1.0.3.data/scripts/diff_expr_edgeR.R'
2022-07-15T03:49:54,355   adding 'pybiotk-1.0.3.data/scripts/diff_expr_plot.R'
2022-07-15T03:49:54,358   adding 'pybiotk-1.0.3.data/scripts/fasta_len.sh'
2022-07-15T03:49:54,360   adding 'pybiotk-1.0.3.data/scripts/fasta_u2t.sh'
2022-07-15T03:49:54,362   adding 'pybiotk-1.0.3.data/scripts/fastq_len.sh'
2022-07-15T03:49:54,364   adding 'pybiotk-1.0.3.data/scripts/get_chrom_length.sh'
2022-07-15T03:49:54,367   adding 'pybiotk-1.0.3.data/scripts/gtfparser.sh'
2022-07-15T03:49:54,369   adding 'pybiotk-1.0.3.data/scripts/merge_subseq.sh'
2022-07-15T03:49:54,372   adding 'pybiotk-1.0.3.data/scripts/peak_anno.R'
2022-07-15T03:49:54,375   adding 'pybiotk-1.0.3.data/scripts/plot_FRiPs.R'
2022-07-15T03:49:54,378   adding 'pybiotk-1.0.3.data/scripts/plot_bar.R'
2022-07-15T03:49:54,380   adding 'pybiotk-1.0.3.data/scripts/plot_corr.R'
2022-07-15T03:49:54,383   adding 'pybiotk-1.0.3.data/scripts/plot_deeptools_fragmentsize.R'
2022-07-15T03:49:54,386   adding 'pybiotk-1.0.3.data/scripts/plot_hist.R'
2022-07-15T03:49:54,388   adding 'pybiotk-1.0.3.data/scripts/plot_peak_width.R'
2022-07-15T03:49:54,391   adding 'pybiotk-1.0.3.data/scripts/plot_rep_cor.R'
2022-07-15T03:49:54,394   adding 'pybiotk-1.0.3.data/scripts/plot_summary.R'
2022-07-15T03:49:54,397   adding 'pybiotk-1.0.3.data/scripts/plot_venn.R'
2022-07-15T03:49:54,400   adding 'pybiotk-1.0.3.data/scripts/remove_duplicates.sh'
2022-07-15T03:49:54,405   adding 'stream/__init__.py'
2022-07-15T03:49:54,409   adding 'stream/pipe.py'
2022-07-15T03:49:54,413   adding 'stream/stream.py'
2022-07-15T03:49:54,415   adding 'pybiotk-1.0.3.dist-info/LICENSE.txt'
2022-07-15T03:49:54,418   adding 'pybiotk-1.0.3.dist-info/METADATA'
2022-07-15T03:49:54,420   adding 'pybiotk-1.0.3.dist-info/WHEEL'
2022-07-15T03:49:54,422   adding 'pybiotk-1.0.3.dist-info/entry_points.txt'
2022-07-15T03:49:54,424   adding 'pybiotk-1.0.3.dist-info/top_level.txt'
2022-07-15T03:49:54,428   adding 'pybiotk-1.0.3.dist-info/RECORD'
2022-07-15T03:49:54,454   removing build/bdist.linux-armv7l/wheel
2022-07-15T03:49:54,852   Building wheel for pybiotk (pyproject.toml): finished with status 'done'
2022-07-15T03:49:54,903   Created wheel for pybiotk: filename=pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl size=556068 sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327
2022-07-15T03:49:54,905   Stored in directory: /tmp/pip-ephem-wheel-cache-wzce1ql8/wheels/33/38/8a/9e767ba7241a1144e09d73056af9bae098d8f3cd2fc766531e
2022-07-15T03:49:54,935 Successfully built pybiotk
2022-07-15T03:49:54,981 Removed build tracker: '/tmp/pip-build-tracker-gict0y_6'