2022-07-15T18:47:26,677 Created temporary directory: /tmp/pip-ephem-wheel-cache-d7jmjbj9 2022-07-15T18:47:26,682 Created temporary directory: /tmp/pip-build-tracker-yqsijo6i 2022-07-15T18:47:26,683 Initialized build tracking at /tmp/pip-build-tracker-yqsijo6i 2022-07-15T18:47:26,683 Created build tracker: /tmp/pip-build-tracker-yqsijo6i 2022-07-15T18:47:26,684 Entered build tracker: /tmp/pip-build-tracker-yqsijo6i 2022-07-15T18:47:26,685 Created temporary directory: /tmp/pip-wheel-9sruv598 2022-07-15T18:47:26,755 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-15T18:47:26,764 2 location(s) to search for versions of flair-brookslab: 2022-07-15T18:47:26,764 * https://pypi.org/simple/flair-brookslab/ 2022-07-15T18:47:26,764 * https://www.piwheels.org/simple/flair-brookslab/ 2022-07-15T18:47:26,765 Fetching project page and analyzing links: https://pypi.org/simple/flair-brookslab/ 2022-07-15T18:47:26,766 Getting page https://pypi.org/simple/flair-brookslab/ 2022-07-15T18:47:26,769 Found index url https://pypi.org/simple 2022-07-15T18:47:26,954 Found link https://files.pythonhosted.org/packages/7b/b0/81e9bccbec5b1eb63764e1629d4f6e4173d4e66a5a7f9380943d5721524d/flair-brookslab-1.6.0.tar.gz#sha256=eb2ea339bf85634f9c170dd9d5a622af4dc0efe5df7a8915458fac54bdc115df (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6), version: 1.6.0 2022-07-15T18:47:26,955 Skipping link: No binaries permitted for flair-brookslab: https://files.pythonhosted.org/packages/9e/2f/b358fc9d63fd1a681dfdf061864a5c7024d691ccd13de2ecf96c5771e90b/flair_brookslab-1.6.0-py3-none-any.whl#sha256=a11f8ecae405298721568a0b29d50a7eff6c64ce3c6be2268ac1c26b71f7ca53 (from https://pypi.org/simple/flair-brookslab/) (requires-python:>=3.6) 2022-07-15T18:47:26,955 Fetching project page and analyzing links: https://www.piwheels.org/simple/flair-brookslab/ 2022-07-15T18:47:26,956 Getting page https://www.piwheels.org/simple/flair-brookslab/ 2022-07-15T18:47:26,958 Found index url https://www.piwheels.org/simple 2022-07-15T18:47:27,212 Skipping link: not a file: https://www.piwheels.org/simple/flair-brookslab/ 2022-07-15T18:47:27,213 Skipping link: not a file: https://pypi.org/simple/flair-brookslab/ 2022-07-15T18:47:27,246 Given no hashes to check 1 links for project 'flair-brookslab': discarding no candidates 2022-07-15T18:47:27,277 Collecting flair-brookslab==1.6.0 2022-07-15T18:47:27,282 Created temporary directory: /tmp/pip-unpack-57ie23a3 2022-07-15T18:47:27,662 Downloading flair-brookslab-1.6.0.tar.gz (99 kB) 2022-07-15T18:47:27,974 Added flair-brookslab==1.6.0 from https://files.pythonhosted.org/packages/7b/b0/81e9bccbec5b1eb63764e1629d4f6e4173d4e66a5a7f9380943d5721524d/flair-brookslab-1.6.0.tar.gz#sha256=eb2ea339bf85634f9c170dd9d5a622af4dc0efe5df7a8915458fac54bdc115df to build tracker '/tmp/pip-build-tracker-yqsijo6i' 2022-07-15T18:47:27,981 Created temporary directory: /tmp/pip-build-env-1y3cqkpk 2022-07-15T18:47:27,996 Created temporary directory: /tmp/pip-standalone-pip-euwpk4fi 2022-07-15T18:47:30,362 Installing build dependencies: started 2022-07-15T18:47:30,364 Running command pip subprocess to install build dependencies 2022-07-15T18:47:39,897 Using pip 22.1.2 from /tmp/pip-standalone-pip-euwpk4fi/__env_pip__.zip/pip (python 3.7) 2022-07-15T18:47:41,249 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-15T18:47:45,244 Collecting setuptools>=42 2022-07-15T18:47:45,513 Using cached https://www.piwheels.org/simple/setuptools/setuptools-63.2.0-py3-none-any.whl (1.2 MB) 2022-07-15T18:47:50,394 Installing collected packages: setuptools 2022-07-15T18:47:55,208 Successfully installed setuptools-63.2.0 2022-07-15T18:47:55,821 Installing build dependencies: finished with status 'done' 2022-07-15T18:47:55,848 Getting requirements to build wheel: started 2022-07-15T18:47:55,851 Running command Getting requirements to build wheel 2022-07-15T18:48:00,574 running egg_info 2022-07-15T18:48:01,196 writing src/flair_brookslab.egg-info/PKG-INFO 2022-07-15T18:48:01,782 writing dependency_links to src/flair_brookslab.egg-info/dependency_links.txt 2022-07-15T18:48:03,535 writing entry points to src/flair_brookslab.egg-info/entry_points.txt 2022-07-15T18:48:04,701 writing requirements to src/flair_brookslab.egg-info/requires.txt 2022-07-15T18:48:05,287 writing top-level names to src/flair_brookslab.egg-info/top_level.txt 2022-07-15T18:48:06,051 reading manifest file 'src/flair_brookslab.egg-info/SOURCES.txt' 2022-07-15T18:48:06,059 adding license file 'LICENSE.txt' 2022-07-15T18:48:06,069 writing manifest file 'src/flair_brookslab.egg-info/SOURCES.txt' 2022-07-15T18:48:06,287 Getting requirements to build wheel: finished with status 'done' 2022-07-15T18:48:06,312 Created temporary directory: /tmp/pip-standalone-pip-7wf8oqif 2022-07-15T18:48:08,492 Installing backend dependencies: started 2022-07-15T18:48:08,494 Running command pip subprocess to install backend dependencies 2022-07-15T18:48:18,026 Using pip 22.1.2 from /tmp/pip-standalone-pip-7wf8oqif/__env_pip__.zip/pip (python 3.7) 2022-07-15T18:48:19,388 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-07-15T18:48:20,327 Collecting wheel 2022-07-15T18:48:20,362 Using cached https://www.piwheels.org/simple/wheel/wheel-0.37.1-py2.py3-none-any.whl (35 kB) 2022-07-15T18:48:24,478 Installing collected packages: wheel 2022-07-15T18:48:24,742 Creating /tmp/pip-build-env-1y3cqkpk/normal/bin 2022-07-15T18:48:24,747 changing mode of /tmp/pip-build-env-1y3cqkpk/normal/bin/wheel to 755 2022-07-15T18:48:24,774 Successfully installed wheel-0.37.1 2022-07-15T18:48:25,330 Installing backend dependencies: finished with status 'done' 2022-07-15T18:48:25,351 Created temporary directory: /tmp/pip-modern-metadata-blt6gj9k 2022-07-15T18:48:25,357 Preparing metadata (pyproject.toml): started 2022-07-15T18:48:25,360 Running command Preparing metadata (pyproject.toml) 2022-07-15T18:48:29,935 running dist_info 2022-07-15T18:48:30,583 creating /tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info 2022-07-15T18:48:31,212 writing /tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info/PKG-INFO 2022-07-15T18:48:31,802 writing dependency_links to /tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info/dependency_links.txt 2022-07-15T18:48:33,573 writing entry points to /tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info/entry_points.txt 2022-07-15T18:48:34,754 writing requirements to /tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info/requires.txt 2022-07-15T18:48:35,341 writing top-level names to /tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info/top_level.txt 2022-07-15T18:48:35,344 writing manifest file '/tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info/SOURCES.txt' 2022-07-15T18:48:36,120 reading manifest file '/tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info/SOURCES.txt' 2022-07-15T18:48:36,124 adding license file 'LICENSE.txt' 2022-07-15T18:48:36,132 writing manifest file '/tmp/pip-modern-metadata-blt6gj9k/flair_brookslab.egg-info/SOURCES.txt' 2022-07-15T18:48:36,136 creating '/tmp/pip-modern-metadata-blt6gj9k/flair_brookslab-1.6.0.dist-info' 2022-07-15T18:48:36,352 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-07-15T18:48:36,582 Preparing metadata (pyproject.toml): finished with status 'done' 2022-07-15T18:48:36,597 Source in /tmp/pip-wheel-9sruv598/flair-brookslab_8d2e5fac2c2c407da1e57546eab89e53 has version 1.6.0, which satisfies requirement flair-brookslab==1.6.0 from https://files.pythonhosted.org/packages/7b/b0/81e9bccbec5b1eb63764e1629d4f6e4173d4e66a5a7f9380943d5721524d/flair-brookslab-1.6.0.tar.gz#sha256=eb2ea339bf85634f9c170dd9d5a622af4dc0efe5df7a8915458fac54bdc115df 2022-07-15T18:48:36,599 Removed flair-brookslab==1.6.0 from https://files.pythonhosted.org/packages/7b/b0/81e9bccbec5b1eb63764e1629d4f6e4173d4e66a5a7f9380943d5721524d/flair-brookslab-1.6.0.tar.gz#sha256=eb2ea339bf85634f9c170dd9d5a622af4dc0efe5df7a8915458fac54bdc115df from build tracker '/tmp/pip-build-tracker-yqsijo6i' 2022-07-15T18:48:36,612 Created temporary directory: /tmp/pip-unpack-9hs9mtx3 2022-07-15T18:48:36,613 Building wheels for collected packages: flair-brookslab 2022-07-15T18:48:36,623 Created temporary directory: /tmp/pip-wheel-_9t36ge2 2022-07-15T18:48:36,624 Destination directory: /tmp/pip-wheel-_9t36ge2 2022-07-15T18:48:36,629 Building wheel for flair-brookslab (pyproject.toml): started 2022-07-15T18:48:36,631 Running command Building wheel for flair-brookslab (pyproject.toml) 2022-07-15T18:48:40,699 running bdist_wheel 2022-07-15T18:48:41,937 running build 2022-07-15T18:48:41,937 running build_py 2022-07-15T18:48:42,572 creating build 2022-07-15T18:48:42,573 creating build/lib 2022-07-15T18:48:42,574 creating build/lib/flair 2022-07-15T18:48:42,576 copying src/flair/filter_collapsed_isoforms_from_annotation.py -> build/lib/flair 2022-07-15T18:48:42,581 copying src/flair/gtf_to_psl.py -> build/lib/flair 2022-07-15T18:48:42,585 copying src/flair/match_counts.py -> build/lib/flair 2022-07-15T18:48:42,589 copying src/flair/get_phase_sets.py -> build/lib/flair 2022-07-15T18:48:42,593 copying src/flair/ssPrep.py -> build/lib/flair 2022-07-15T18:48:42,597 copying src/flair/psl_reads_from_bed.py -> build/lib/flair 2022-07-15T18:48:42,600 copying src/flair/runDU.py -> build/lib/flair 2022-07-15T18:48:42,604 copying src/flair/consolidate_isoforms.py -> build/lib/flair 2022-07-15T18:48:42,608 copying src/flair/es_as.py -> build/lib/flair 2022-07-15T18:48:42,612 copying src/flair/diff_iso_usage.py -> build/lib/flair 2022-07-15T18:48:42,615 copying src/flair/runDS.py -> build/lib/flair 2022-07-15T18:48:42,620 copying src/flair/runDE.py -> build/lib/flair 2022-07-15T18:48:42,624 copying src/flair/psl_to_sequence.py -> build/lib/flair 2022-07-15T18:48:42,628 copying src/flair/psl_to_gtf.py -> build/lib/flair 2022-07-15T18:48:42,632 copying src/flair/es_as_inc_excl_to_counts.py -> build/lib/flair 2022-07-15T18:48:42,635 copying src/flair/predictProductivity.py -> build/lib/flair 2022-07-15T18:48:42,639 copying src/flair/psl_to_bed.py -> build/lib/flair 2022-07-15T18:48:42,643 copying src/flair/flair.py -> build/lib/flair 2022-07-15T18:48:42,649 copying src/flair/bam2Bed12.py -> build/lib/flair 2022-07-15T18:48:42,653 copying src/flair/deFLAIR.py -> build/lib/flair 2022-07-15T18:48:42,657 copying src/flair/collapse_isoforms_precise.py -> build/lib/flair 2022-07-15T18:48:42,662 copying src/flair/samJuncs.py -> build/lib/flair 2022-07-15T18:48:42,666 copying src/flair/sam_to_psl.py -> build/lib/flair 2022-07-15T18:48:42,669 copying src/flair/combine_counts.py -> build/lib/flair 2022-07-15T18:48:42,672 copying src/flair/bed_to_psl.py -> build/lib/flair 2022-07-15T18:48:42,676 copying src/flair/fasta_seq_lengths.py -> build/lib/flair 2022-07-15T18:48:42,678 copying src/flair/subset_unassigned_reads.py -> build/lib/flair 2022-07-15T18:48:42,681 copying src/flair/pull_starts.py -> build/lib/flair 2022-07-15T18:48:42,685 copying src/flair/filter_collapsed_isoforms.py -> build/lib/flair 2022-07-15T18:48:42,688 copying src/flair/call_diffsplice_events.py -> build/lib/flair 2022-07-15T18:48:42,692 copying src/flair/counts_to_tpm.py -> build/lib/flair 2022-07-15T18:48:42,695 copying src/flair/filter_isoforms_by_proportion_of_gene_expr.py -> build/lib/flair 2022-07-15T18:48:42,698 copying src/flair/__init__.py -> build/lib/flair 2022-07-15T18:48:42,701 copying src/flair/runFish.py -> build/lib/flair 2022-07-15T18:48:42,705 copying src/flair/identify_annotated_gene.py -> build/lib/flair 2022-07-15T18:48:42,709 copying src/flair/identify_gene_isoform.py -> build/lib/flair 2022-07-15T18:48:42,713 copying src/flair/count_sam_transcripts.py -> build/lib/flair 2022-07-15T18:48:42,717 copying src/flair/ssCorrect.py -> build/lib/flair 2022-07-15T18:48:42,727 running build_scripts 2022-07-15T18:48:42,728 creating build/scripts-3.7 2022-07-15T18:48:42,729 copying and adjusting bin/junctions_from_sam -> build/scripts-3.7 2022-07-15T18:48:42,737 copying and adjusting bin/mark_intron_retention -> build/scripts-3.7 2022-07-15T18:48:42,740 copying and adjusting bin/mark_productivity -> build/scripts-3.7 2022-07-15T18:48:42,744 copying and adjusting bin/normalize_counts_matrix -> build/scripts-3.7 2022-07-15T18:48:42,747 copying and adjusting bin/bam2Bed12 -> build/scripts-3.7 2022-07-15T18:48:42,751 copying and adjusting bin/bed_to_psl -> build/scripts-3.7 2022-07-15T18:48:42,754 copying and adjusting bin/diff_iso_usage -> build/scripts-3.7 2022-07-15T18:48:42,758 copying and adjusting bin/diffsplice_fishers_exact -> build/scripts-3.7 2022-07-15T18:48:42,760 copying and adjusting bin/plot_isoform_usage -> build/scripts-3.7 2022-07-15T18:48:42,765 copying and adjusting bin/predictProductivity -> build/scripts-3.7 2022-07-15T18:48:42,770 copying and adjusting bin/psl_to_bed -> build/scripts-3.7 2022-07-15T18:48:42,772 copying and adjusting bin/sam_to_map -> build/scripts-3.7 2022-07-15T18:48:42,774 changing mode of build/scripts-3.7/junctions_from_sam from 644 to 755 2022-07-15T18:48:42,775 changing mode of build/scripts-3.7/mark_intron_retention from 644 to 755 2022-07-15T18:48:42,775 changing mode of build/scripts-3.7/mark_productivity from 644 to 755 2022-07-15T18:48:42,776 changing mode of build/scripts-3.7/normalize_counts_matrix from 644 to 755 2022-07-15T18:48:42,776 changing mode of build/scripts-3.7/bam2Bed12 from 644 to 755 2022-07-15T18:48:42,777 changing mode of build/scripts-3.7/bed_to_psl from 644 to 755 2022-07-15T18:48:42,777 changing mode of build/scripts-3.7/diff_iso_usage from 644 to 755 2022-07-15T18:48:42,778 changing mode of build/scripts-3.7/diffsplice_fishers_exact from 644 to 755 2022-07-15T18:48:42,778 changing mode of build/scripts-3.7/plot_isoform_usage from 644 to 755 2022-07-15T18:48:42,779 changing mode of build/scripts-3.7/predictProductivity from 644 to 755 2022-07-15T18:48:42,779 changing mode of build/scripts-3.7/psl_to_bed from 644 to 755 2022-07-15T18:48:42,780 changing mode of build/scripts-3.7/sam_to_map from 644 to 755 2022-07-15T18:48:44,058 installing to build/bdist.linux-armv7l/wheel 2022-07-15T18:48:44,058 running install 2022-07-15T18:48:44,120 running install_lib 2022-07-15T18:48:44,750 creating build/bdist.linux-armv7l 2022-07-15T18:48:44,751 creating build/bdist.linux-armv7l/wheel 2022-07-15T18:48:44,755 creating build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,757 copying build/lib/flair/filter_collapsed_isoforms_from_annotation.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,762 copying build/lib/flair/gtf_to_psl.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,766 copying build/lib/flair/match_counts.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,770 copying build/lib/flair/get_phase_sets.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,774 copying build/lib/flair/ssPrep.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,778 copying build/lib/flair/psl_reads_from_bed.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,781 copying build/lib/flair/runDU.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,786 copying build/lib/flair/consolidate_isoforms.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,789 copying build/lib/flair/es_as.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,794 copying build/lib/flair/diff_iso_usage.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,797 copying build/lib/flair/runDS.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,801 copying build/lib/flair/runDE.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,805 copying build/lib/flair/psl_to_sequence.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,809 copying build/lib/flair/psl_to_gtf.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,813 copying build/lib/flair/es_as_inc_excl_to_counts.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,817 copying build/lib/flair/predictProductivity.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,821 copying build/lib/flair/psl_to_bed.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,824 copying build/lib/flair/flair.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,830 copying build/lib/flair/bam2Bed12.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,835 copying build/lib/flair/deFLAIR.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,839 copying build/lib/flair/collapse_isoforms_precise.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,844 copying build/lib/flair/samJuncs.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,848 copying build/lib/flair/sam_to_psl.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,851 copying build/lib/flair/combine_counts.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,855 copying build/lib/flair/bed_to_psl.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,858 copying build/lib/flair/fasta_seq_lengths.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,861 copying build/lib/flair/subset_unassigned_reads.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,864 copying build/lib/flair/pull_starts.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,867 copying build/lib/flair/filter_collapsed_isoforms.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,871 copying build/lib/flair/call_diffsplice_events.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,875 copying build/lib/flair/counts_to_tpm.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,878 copying build/lib/flair/filter_isoforms_by_proportion_of_gene_expr.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,882 copying build/lib/flair/__init__.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,884 copying build/lib/flair/runFish.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,888 copying build/lib/flair/identify_annotated_gene.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,892 copying build/lib/flair/identify_gene_isoform.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,896 copying build/lib/flair/count_sam_transcripts.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,900 copying build/lib/flair/ssCorrect.py -> build/bdist.linux-armv7l/wheel/flair 2022-07-15T18:48:44,904 running install_egg_info 2022-07-15T18:48:46,247 running egg_info 2022-07-15T18:48:46,880 writing src/flair_brookslab.egg-info/PKG-INFO 2022-07-15T18:48:47,473 writing dependency_links to src/flair_brookslab.egg-info/dependency_links.txt 2022-07-15T18:48:49,269 writing entry points to src/flair_brookslab.egg-info/entry_points.txt 2022-07-15T18:48:50,463 writing requirements to src/flair_brookslab.egg-info/requires.txt 2022-07-15T18:48:51,058 writing top-level names to src/flair_brookslab.egg-info/top_level.txt 2022-07-15T18:48:51,106 reading manifest file 'src/flair_brookslab.egg-info/SOURCES.txt' 2022-07-15T18:48:51,114 adding license file 'LICENSE.txt' 2022-07-15T18:48:51,125 writing manifest file 'src/flair_brookslab.egg-info/SOURCES.txt' 2022-07-15T18:48:51,128 Copying src/flair_brookslab.egg-info to build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0-py3.7.egg-info 2022-07-15T18:48:51,153 running install_scripts 2022-07-15T18:48:51,271 creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data 2022-07-15T18:48:51,272 creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,275 copying build/scripts-3.7/normalize_counts_matrix -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,279 copying build/scripts-3.7/sam_to_map -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,283 copying build/scripts-3.7/junctions_from_sam -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,289 copying build/scripts-3.7/bed_to_psl -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,293 copying build/scripts-3.7/psl_to_bed -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,297 copying build/scripts-3.7/plot_isoform_usage -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,303 copying build/scripts-3.7/diff_iso_usage -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,307 copying build/scripts-3.7/mark_productivity -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,311 copying build/scripts-3.7/mark_intron_retention -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,316 copying build/scripts-3.7/predictProductivity -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,321 copying build/scripts-3.7/diffsplice_fishers_exact -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,325 copying build/scripts-3.7/bam2Bed12 -> build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts 2022-07-15T18:48:51,329 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/normalize_counts_matrix to 755 2022-07-15T18:48:51,330 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/sam_to_map to 755 2022-07-15T18:48:51,331 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/junctions_from_sam to 755 2022-07-15T18:48:51,332 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/bed_to_psl to 755 2022-07-15T18:48:51,333 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/psl_to_bed to 755 2022-07-15T18:48:51,335 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/plot_isoform_usage to 755 2022-07-15T18:48:51,336 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/diff_iso_usage to 755 2022-07-15T18:48:51,337 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/mark_productivity to 755 2022-07-15T18:48:51,338 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/mark_intron_retention to 755 2022-07-15T18:48:51,339 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/predictProductivity to 755 2022-07-15T18:48:51,340 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/diffsplice_fishers_exact to 755 2022-07-15T18:48:51,341 changing mode of build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.data/scripts/bam2Bed12 to 755 2022-07-15T18:48:51,395 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-07-15T18:48:51,404 creating build/bdist.linux-armv7l/wheel/flair_brookslab-1.6.0.dist-info/WHEEL 2022-07-15T18:48:51,408 creating '/tmp/pip-wheel-_9t36ge2/tmpug57fps1/flair_brookslab-1.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-07-15T18:48:51,414 adding 'flair/__init__.py' 2022-07-15T18:48:51,418 adding 'flair/bam2Bed12.py' 2022-07-15T18:48:51,421 adding 'flair/bed_to_psl.py' 2022-07-15T18:48:51,425 adding 'flair/call_diffsplice_events.py' 2022-07-15T18:48:51,434 adding 'flair/collapse_isoforms_precise.py' 2022-07-15T18:48:51,438 adding 'flair/combine_counts.py' 2022-07-15T18:48:51,441 adding 'flair/consolidate_isoforms.py' 2022-07-15T18:48:51,447 adding 'flair/count_sam_transcripts.py' 2022-07-15T18:48:51,450 adding 'flair/counts_to_tpm.py' 2022-07-15T18:48:51,455 adding 'flair/deFLAIR.py' 2022-07-15T18:48:51,458 adding 'flair/diff_iso_usage.py' 2022-07-15T18:48:51,462 adding 'flair/es_as.py' 2022-07-15T18:48:51,466 adding 'flair/es_as_inc_excl_to_counts.py' 2022-07-15T18:48:51,469 adding 'flair/fasta_seq_lengths.py' 2022-07-15T18:48:51,473 adding 'flair/filter_collapsed_isoforms.py' 2022-07-15T18:48:51,478 adding 'flair/filter_collapsed_isoforms_from_annotation.py' 2022-07-15T18:48:51,481 adding 'flair/filter_isoforms_by_proportion_of_gene_expr.py' 2022-07-15T18:48:51,497 adding 'flair/flair.py' 2022-07-15T18:48:51,501 adding 'flair/get_phase_sets.py' 2022-07-15T18:48:51,505 adding 'flair/gtf_to_psl.py' 2022-07-15T18:48:51,509 adding 'flair/identify_annotated_gene.py' 2022-07-15T18:48:51,513 adding 'flair/identify_gene_isoform.py' 2022-07-15T18:48:51,516 adding 'flair/match_counts.py' 2022-07-15T18:48:51,521 adding 'flair/predictProductivity.py' 2022-07-15T18:48:51,525 adding 'flair/psl_reads_from_bed.py' 2022-07-15T18:48:51,528 adding 'flair/psl_to_bed.py' 2022-07-15T18:48:51,531 adding 'flair/psl_to_gtf.py' 2022-07-15T18:48:51,535 adding 'flair/psl_to_sequence.py' 2022-07-15T18:48:51,538 adding 'flair/pull_starts.py' 2022-07-15T18:48:51,542 adding 'flair/runDE.py' 2022-07-15T18:48:51,546 adding 'flair/runDS.py' 2022-07-15T18:48:51,551 adding 'flair/runDU.py' 2022-07-15T18:48:51,555 adding 'flair/runFish.py' 2022-07-15T18:48:51,559 adding 'flair/samJuncs.py' 2022-07-15T18:48:51,562 adding 'flair/sam_to_psl.py' 2022-07-15T18:48:51,568 adding 'flair/ssCorrect.py' 2022-07-15T18:48:51,573 adding 'flair/ssPrep.py' 2022-07-15T18:48:51,576 adding 'flair/subset_unassigned_reads.py' 2022-07-15T18:48:51,581 adding 'flair_brookslab-1.6.0.data/scripts/bam2Bed12' 2022-07-15T18:48:51,583 adding 'flair_brookslab-1.6.0.data/scripts/bed_to_psl' 2022-07-15T18:48:51,586 adding 'flair_brookslab-1.6.0.data/scripts/diff_iso_usage' 2022-07-15T18:48:51,588 adding 'flair_brookslab-1.6.0.data/scripts/diffsplice_fishers_exact' 2022-07-15T18:48:51,596 adding 'flair_brookslab-1.6.0.data/scripts/junctions_from_sam' 2022-07-15T18:48:51,599 adding 'flair_brookslab-1.6.0.data/scripts/mark_intron_retention' 2022-07-15T18:48:51,603 adding 'flair_brookslab-1.6.0.data/scripts/mark_productivity' 2022-07-15T18:48:51,606 adding 'flair_brookslab-1.6.0.data/scripts/normalize_counts_matrix' 2022-07-15T18:48:51,610 adding 'flair_brookslab-1.6.0.data/scripts/plot_isoform_usage' 2022-07-15T18:48:51,615 adding 'flair_brookslab-1.6.0.data/scripts/predictProductivity' 2022-07-15T18:48:51,617 adding 'flair_brookslab-1.6.0.data/scripts/psl_to_bed' 2022-07-15T18:48:51,619 adding 'flair_brookslab-1.6.0.data/scripts/sam_to_map' 2022-07-15T18:48:51,624 adding 'flair_brookslab-1.6.0.dist-info/LICENSE.txt' 2022-07-15T18:48:51,626 adding 'flair_brookslab-1.6.0.dist-info/METADATA' 2022-07-15T18:48:51,628 adding 'flair_brookslab-1.6.0.dist-info/WHEEL' 2022-07-15T18:48:51,630 adding 'flair_brookslab-1.6.0.dist-info/entry_points.txt' 2022-07-15T18:48:51,631 adding 'flair_brookslab-1.6.0.dist-info/top_level.txt' 2022-07-15T18:48:51,634 adding 'flair_brookslab-1.6.0.dist-info/RECORD' 2022-07-15T18:48:51,642 removing build/bdist.linux-armv7l/wheel 2022-07-15T18:48:51,928 Building wheel for flair-brookslab (pyproject.toml): finished with status 'done' 2022-07-15T18:48:51,948 Created wheel for flair-brookslab: filename=flair_brookslab-1.6.0-py3-none-any.whl size=123374 sha256=42ffc8ce342e04c7e8a51c1ec41186e9142440e459349cd7fd4a9b7b42098b70 2022-07-15T18:48:51,951 Stored in directory: /tmp/pip-ephem-wheel-cache-d7jmjbj9/wheels/09/6d/95/140def8a7cff5f59174d7f1be625909c02f28deec0583f3d1b 2022-07-15T18:48:51,977 Successfully built flair-brookslab 2022-07-15T18:48:51,999 Removed build tracker: '/tmp/pip-build-tracker-yqsijo6i'